Citrus Sinensis ID: 028292

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCSS
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEcccccHHHHHHHccccccccccccccEEcEEEEEEEccEEEEEEEEEccccccccccHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHEEEEEEEccccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEccHHHcccccHHHHccccEEEEEEEcccHHHHHcHHHcHHHHHHHHcccccEEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MASSTSQQEFDYLFKLLLIgdsgvgksTLLLSFtsdtfeelsptigvdfkikhvalggKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVgnkvdkeservVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIldtpsllsegssgvkknifkesppqndasttgccss
Flexible Loop (DISEMBL)
MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLtssyyrgaqGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVgnkvdkeservvskkegiDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKknifkesppqndasttgccss
Low Complexity Region (SEG)
MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCSS
Disordered region (IsUnstruct)
*********FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP********************************
Disordered Region (DISOPRED)
***********YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK*******************************TGCCS*
Disordered Region (DISEMBL)
********EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIFKE***************
Disordered Region (DISPRO)
******QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS*******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
O23657	212	Ras-related protein RABC1	yes	no	0.947	0.943	0.87	1e-100
O49841	210	Ras-related protein RABC2	no	no	0.995	1.0	0.695	1e-87
Q9SF92	205	Ras-related protein RABC2	no	no	0.971	1.0	0.663	3e-73
P36862	203	GTP-binding protein yptV3	N/A	no	0.928	0.965	0.592	5e-60
Q6DHC1	205	Ras-related protein Rab-1	yes	no	0.909	0.936	0.575	1e-56
Q5ZLG1	206	Ras-related protein Rab-1	yes	no	0.829	0.849	0.616	2e-54
Q5EB77	206	Ras-related protein Rab-1	yes	no	0.890	0.912	0.572	1e-53
Q0IIG8	206	Ras-related protein Rab-1	yes	no	0.786	0.805	0.627	1e-53
P35293	206	Ras-related protein Rab-1	yes	no	0.914	0.936	0.58	1e-53
Q5R5H5	206	Ras-related protein Rab-1	yes	no	0.786	0.805	0.627	1e-53

>sp|O23657|RABC1_ARATH Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=2 SV=1

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/200 (87%), Positives = 191/200 (95%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+ Q EFDYLFK+LLIGDSGVGKS+LLLSFTS+TF++LSPTIGVDFK+K++ +G KK
Sbjct: 1   MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL+DIWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           IK+LVGNKVDKESER VSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPS 180

Query: 181 LLSEGSSGVKKNIFKESPPQ 200
           L +EGSSG KKNIFK++P Q
Sbjct: 181 LTAEGSSGGKKNIFKQNPAQ 200

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1

 Score =  322 bits (824), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 146/210 (69%), Positives = 178/210 (84%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+ Q  +D  FK+LLIGDSGVGKS+LL+SF S + E+L+PTIGVDFKIK + +GGK+
Sbjct: 1   MGSSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKR 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL D+W KEI+LYSTNQ+C
Sbjct: 61  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 120

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           +++LVGNKVD+ESER VS++EGI  A+E  C+FLECSA+TR NVEQCFEEL LKI++ PS
Sbjct: 121 VRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPS 180

Query: 181 LLSEGSSGVKKNIFKESPPQNDASTTGCCS 210
           LL EGSS VK+NI K+ P     + +GCCS
Sbjct: 181 LLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF92|RAC2B_ARATH Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1

 Score =  274 bits (700), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 140/211 (66%), Positives = 169/211 (80%), Gaps = 6/211 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+ Q  +D  FK+LLIGDSGVGKS+LLLSF S + E+L+PTIGVDFKIK + + GK+
Sbjct: 1   MGSSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKR 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NLADIWAKEI+LYSTN DC
Sbjct: 61  LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 120

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           IK+LVGNKVD+ESER VS++EG+  A++  CLF ECSA+TR NV  CFEEL LKI++ PS
Sbjct: 121 IKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPS 180

Query: 181 LLSEGSSGVKKNIFKESPPQNDASTTGCCSS 211
           LL EGSS VK+       P   A    CCSS
Sbjct: 181 LLEEGSSSVKRK------PDYRAHQGRCCSS 205

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36862|YPTV3_VOLCA GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1

 Score =  230 bits (587), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 141/199 (70%), Gaps = 3/199 (1%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           DY FK+LL+GDSGVGKS +L  FTS  FEE  + TIGVDFK+K++   GK+ KL IWDTA
Sbjct: 7   DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTA 66

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRTLTSSYYRGAQGII VYDVTRRDTF +L   W +E D+YST +  IK++V NKV
Sbjct: 67  GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGV 189
           D  ++R VS +EG DFAR +GCLF+E SA+  + V Q FEEL+LKILDTP LL   + G 
Sbjct: 127 DLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLETTAVGG 186

Query: 190 KKNIFKESPPQNDASTTGC 208
            K      P    A    C
Sbjct: 187 IK--LGAVPTGQQAGVCSC 203

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/200 (57%), Positives = 147/200 (73%), Gaps = 8/200 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +A+ G + KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK+
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKD 127

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL--SEGSSGVK 190
           + R V + EG+ FAR++  LF+E SAKTR  V+  FEELV KIL TP L   S  + GV+
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGVQ 186

Query: 191 KNIFKESPPQNDASTTGCCS 210
                ++ PQ   +  G CS
Sbjct: 187 ---LSDNEPQRQGACGGYCS 203

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Danio rerio (taxid: 7955)

>sp|Q5ZLG1|RAB18_CHICK Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/180 (61%), Positives = 136/180 (75%), Gaps = 5/180 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKE 127

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSS--GVK 190
           + R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L    S   GVK
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQNKGVK 186

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Gallus gallus (taxid: 9031)

>sp|Q5EB77|RAB18_RAT Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 144/199 (72%), Gaps = 11/199 (5%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL-SEGSS-GVK 190
           + R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L  SE  + GVK
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK 186

Query: 191 KNIFKESPPQNDASTTGCC 209
            +      P+ ++   G C
Sbjct: 187 LS------PREESHGGGAC 199

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q0IIG8|RAB18_BOVIN Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 131/169 (77%), Gaps = 3/169 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
           + R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 175

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Bos taurus (taxid: 9913)

>sp|P35293|RAB18_MOUSE Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 146/200 (73%), Gaps = 7/200 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL-SEGSS-GVK 190
           + R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L  SE  + GVK
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVK 186

Query: 191 KNIFKESPPQNDASTTGCCS 210
            +  +ES  +   +  G CS
Sbjct: 187 LSHREES--RGGGACGGYCS 204

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Mus musculus (taxid: 10090)

>sp|Q5R5H5|RAB18_PONAB Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 131/169 (77%), Gaps = 3/169 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 127

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
           + R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L
Sbjct: 128 N-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 175

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
302142732	307	unnamed protein product [Vitis vinifera]	0.981	0.674	0.898	1e-108
225457841	211	PREDICTED: ras-related protein RABC1 iso	0.981	0.981	0.898	1e-108
449458101	213	PREDICTED: ras-related protein RABC1-lik	0.990	0.981	0.880	1e-105
351725909	215	uncharacterized protein LOC100499773 [Gl	0.971	0.953	0.887	1e-105
388517279	209	unknown [Lotus japonicus]	0.990	1.0	0.866	1e-105
255558462	571	protein phosphatase 2c, putative [Ricinu	0.990	0.366	0.866	1e-105
224062966	211	predicted protein [Populus trichocarpa]	0.976	0.976	0.884	1e-105
1370174	207	RAB1Y [Lotus japonicus]	0.981	1.0	0.869	1e-104
363808158	209	uncharacterized protein LOC100787603 [Gl	0.990	1.0	0.856	1e-104
359806090	214	uncharacterized protein LOC100794330 [Gl	0.966	0.953	0.887	1e-104

>gi|302142732|emb|CBI19935.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/207 (89%), Positives = 204/207 (98%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           SS+SQ EFDYLFKLLLIGDSGVGKSTLLLSFTS+TFE+LSPTIGVDFK+KHV +GGKK+K
Sbjct: 101 SSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGKKLK 160

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           LAIWDTAGQERFRTLTSSYYRGAQG+IMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCIK
Sbjct: 161 LAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIK 220

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182
           +LVGNKVDKESERVV+KKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL+TPSLL
Sbjct: 221 MLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLL 280

Query: 183 SEGSSGVKKNIFKESPPQNDASTTGCC 209
           +EGSSGV+KNIFK+ PP++DAST+GCC
Sbjct: 281 AEGSSGVRKNIFKQKPPESDASTSGCC 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457841|ref|XP_002267387.1| PREDICTED: ras-related protein RABC1 isoform 1 [Vitis vinifera] gi|359492296|ref|XP_003634396.1| PREDICTED: ras-related protein RABC1 [Vitis vinifera]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/207 (89%), Positives = 204/207 (98%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           SS+SQ EFDYLFKLLLIGDSGVGKSTLLLSFTS+TFE+LSPTIGVDFK+KHV +GGKK+K
Sbjct: 5   SSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGKKLK 64

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           LAIWDTAGQERFRTLTSSYYRGAQG+IMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCIK
Sbjct: 65  LAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIK 124

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182
           +LVGNKVDKESERVV+KKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL+TPSLL
Sbjct: 125 MLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLL 184

Query: 183 SEGSSGVKKNIFKESPPQNDASTTGCC 209
           +EGSSGV+KNIFK+ PP++DAST+GCC
Sbjct: 185 AEGSSGVRKNIFKQKPPESDASTSGCC 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458101|ref|XP_004146786.1| PREDICTED: ras-related protein RABC1-like isoform 1 [Cucumis sativus] gi|449458103|ref|XP_004146787.1| PREDICTED: ras-related protein RABC1-like isoform 2 [Cucumis sativus] gi|449529576|ref|XP_004171774.1| PREDICTED: ras-related protein RABC1-like isoform 1 [Cucumis sativus] gi|449529578|ref|XP_004171775.1| PREDICTED: ras-related protein RABC1-like isoform 2 [Cucumis sativus]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/209 (88%), Positives = 198/209 (94%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKM 61
           A S+SQ EFDYLFKLLLIGDSGVGKSTLLL FTSD+FE+LSPTIGVDFKIKHV +GGKK+
Sbjct: 4   APSSSQPEFDYLFKLLLIGDSGVGKSTLLLRFTSDSFEDLSPTIGVDFKIKHVTVGGKKL 63

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           KLAIWDTAGQERFRTLT SYYRGAQGIIMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCI
Sbjct: 64  KLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCI 123

Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
           K+LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF+ELVLKILDTPSL
Sbjct: 124 KMLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFDELVLKILDTPSL 183

Query: 182 LSEGSSGVKKNIFKESPPQNDASTTGCCS 210
           L++GS+G+KKNIFKE PP+   S  GCCS
Sbjct: 184 LADGSTGLKKNIFKEKPPETTTSAGGCCS 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725909|ref|NP_001235829.1| uncharacterized protein LOC100499773 [Glycine max] gi|255626443|gb|ACU13566.1| unknown [Glycine max]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/205 (88%), Positives = 199/205 (97%)

Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAI 65
           +Q EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE+LSPTIGVDFK+K+V +GGKK KLAI
Sbjct: 10  TQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTMGGKKSKLAI 69

Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCIK+LV
Sbjct: 70  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLV 129

Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEG 185
           GNKVDKESERVVSKKEGIDFAREYGCL+ ECSAKTRVNV QCF+ELV+KIL+TPSLL+EG
Sbjct: 130 GNKVDKESERVVSKKEGIDFAREYGCLYTECSAKTRVNVAQCFDELVMKILETPSLLAEG 189

Query: 186 SSGVKKNIFKESPPQNDASTTGCCS 210
           SSGVKKNIFK+ PPQ+DAS++GCCS
Sbjct: 190 SSGVKKNIFKQKPPQSDASSSGCCS 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517279|gb|AFK46701.1| unknown [Lotus japonicus]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/209 (86%), Positives = 201/209 (96%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS++ QEFDYLFKLL+IGDSGVGKS+LLLSFTSD F+++SPTIGVDFK+K+VA+GGKK
Sbjct: 1   MDSSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL++IWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           IK+LVGNKVDKES+RVVSKKEGIDFAREYGCLF+ECSAKTRVNV+QCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSSGVKKNIFKESPPQNDASTTGCC 209
           LL+EGS GVKKNIFK+  PQ DAST+ CC
Sbjct: 181 LLAEGSKGVKKNIFKDKQPQADASTSSCC 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558462|ref|XP_002520256.1| protein phosphatase 2c, putative [Ricinus communis] gi|223540475|gb|EEF42042.1| protein phosphatase 2c, putative [Ricinus communis]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/210 (86%), Positives = 201/210 (95%), Gaps = 1/210 (0%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+SQ EFDYLFKLLLIGDSGVGKS+LLLSFTS+TF++LSPTIGVDFK+KHV +GGKK
Sbjct: 1   MESSSSQPEFDYLFKLLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKHVTIGGKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL+DIWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           IK+LVGNKVDKESE VV+KKEGI+FAR+YGCLFLECSAKTRVNVEQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESEIVVTKKEGIEFARQYGCLFLECSAKTRVNVEQCFEELVLKILETPS 180

Query: 181 LLSEGSSGVKKNIFKESPPQNDASTTGCCS 210
           LL+EGSSGVK+NIFK+ PPQ D  T+ CC+
Sbjct: 181 LLAEGSSGVKRNIFKQKPPQ-DVPTSSCCT 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062966|ref|XP_002300952.1| predicted protein [Populus trichocarpa] gi|222842678|gb|EEE80225.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/207 (88%), Positives = 200/207 (96%), Gaps = 1/207 (0%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKL 63
           STSQQEF+YLFKLLLIGDSGVGKSTLLLSFTS  FE+LSPTIGVDFK+KHV +GGKK+KL
Sbjct: 5   STSQQEFEYLFKLLLIGDSGVGKSTLLLSFTSKNFEDLSPTIGVDFKVKHVTIGGKKLKL 64

Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
           AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNL++IWAKEIDLYSTNQDCIK+
Sbjct: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQDCIKM 124

Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLS 183
           LVGNKVDKESERVV+KKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL+TPSLL+
Sbjct: 125 LVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLLA 184

Query: 184 EGSSGVKKNIFKESPPQNDASTTGCCS 210
           EGSSGVKKN+FK+ PP+ D +T+ CCS
Sbjct: 185 EGSSGVKKNVFKQKPPE-DVTTSSCCS 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370174|emb|CAA98164.1| RAB1Y [Lotus japonicus]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/207 (86%), Positives = 200/207 (96%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           SS++ QEFDYLFKLL+IGDSGVGKS+LLLSFTSD F+++SPTIGVDFK+K+VA+GGKK+K
Sbjct: 1   SSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKKLK 60

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL++IWAKEIDLYSTNQDCIK
Sbjct: 61  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIK 120

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182
           +LVGNKVDKES+RVVSKKEGIDFAREYGCLF+ECSAKTRVNV+QCFEELVLKILDTPSLL
Sbjct: 121 MLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 180

Query: 183 SEGSSGVKKNIFKESPPQNDASTTGCC 209
           +EGS GVKKNIFK+  PQ DAST+ CC
Sbjct: 181 AEGSKGVKKNIFKDKQPQADASTSSCC 207

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808158|ref|NP_001242481.1| uncharacterized protein LOC100787603 [Glycine max] gi|255639535|gb|ACU20062.1| unknown [Glycine max] gi|255639578|gb|ACU20083.1| unknown [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/209 (85%), Positives = 199/209 (95%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+  QEFDYLFKLL+IGDSGVGKS+LLLSFTSD FE+LSPTIGVDFK+K+V +GGKK
Sbjct: 1   MDSSSEHQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDFKVKYVTMGGKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLT+SYYRGAQGIIMVYDVTRR TFTNL++IWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTNSYYRGAQGIIMVYDVTRRGTFTNLSEIWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           IK+LVGNKVDKE +RVV+KKEGIDFAREYGCLF+ECSAKTRVNV+QCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSSGVKKNIFKESPPQNDASTTGCC 209
           L++EGS GVKKNIFKE PPQ+DAST+ CC
Sbjct: 181 LIAEGSKGVKKNIFKERPPQSDASTSSCC 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806090|ref|NP_001241441.1| uncharacterized protein LOC100794330 [Glycine max] gi|255645015|gb|ACU23007.1| unknown [Glycine max]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/204 (88%), Positives = 198/204 (97%)

Query: 7   QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIW 66
           Q EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE+LSPTIGVDFK+K+V +GGKK+KLAIW
Sbjct: 10  QPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTIGGKKLKLAIW 69

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCIK+LVG
Sbjct: 70  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVG 129

Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGS 186
           NKVDKESERVVSKKEGIDFAREYGCL+ ECSAKTRVNV QCF+ELV+KIL+TPSLL+EGS
Sbjct: 130 NKVDKESERVVSKKEGIDFAREYGCLYTECSAKTRVNVTQCFDELVMKILETPSLLAEGS 189

Query: 187 SGVKKNIFKESPPQNDASTTGCCS 210
           SGVKKNIFK+ PP +DAS++GCCS
Sbjct: 190 SGVKKNIFKQKPPLSDASSSGCCS 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2029167	212	RAB18 "RAB GTPASE HOMOLOG B18"	1.0	0.995	0.839	7.8e-94
TAIR|locus:2831859	210	RABC2A "RAB GTPase homolog C2A	0.995	1.0	0.695	4.2e-79
TAIR|locus:2085084	205	RABC2b "RAB GTPase homolog C2B	0.971	1.0	0.663	4.8e-71
ZFIN|ZDB-GENE-040801-185	205	rab18b "RAB18B, member RAS onc	0.905	0.931	0.572	1.6e-54
UNIPROTKB|Q5ZLG1	206	RAB18 "Ras-related protein Rab	0.909	0.932	0.582	4.9e-53
UNIPROTKB|Q9NP72	206	RAB18 "Ras-related protein Rab	0.909	0.932	0.582	4.9e-53
UNIPROTKB|Q5R5H5	206	RAB18 "Ras-related protein Rab	0.909	0.932	0.582	4.9e-53
MGI|MGI:102790	206	Rab18 "RAB18, member RAS oncog	0.909	0.932	0.582	4.9e-53
UNIPROTKB|Q0IIG8	206	RAB18 "Ras-related protein Rab	0.909	0.932	0.582	6.3e-53
UNIPROTKB|I3LC07	206	RAB18 "Uncharacterized protein	0.909	0.932	0.582	6.3e-53

TAIR|locus:2029167 RAB18 "RAB GTPASE HOMOLOG B18" [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 178/212 (83%), Positives = 199/212 (93%)

Query:     1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
             M SS+ Q EFDYLFK+LLIGDSGVGKS+LLLSFTS+TF++LSPTIGVDFK+K++ +G KK
Sbjct:     1 MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60

Query:    61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL+DIWAKEIDLYSTNQDC
Sbjct:    61 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query:   121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
             IK+LVGNKVDKESER VSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL+TPS
Sbjct:   121 IKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPS 180

Query:   181 LLSEGSSGVKKNIFKESPPQNDASTTG-CCSS 211
             L +EGSSG KKNIFK++P Q  ++++  CCSS
Sbjct:   181 LTAEGSSGGKKNIFKQNPAQTTSTSSSYCCSS 212

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2831859 RABC2A "RAB GTPase homolog C2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 146/210 (69%), Positives = 178/210 (84%)

Query:     1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
             M SS+ Q  +D  FK+LLIGDSGVGKS+LL+SF S + E+L+PTIGVDFKIK + +GGK+
Sbjct:     1 MGSSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKR 60

Query:    61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             +KL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL D+W KEI+LYSTNQ+C
Sbjct:    61 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 120

Query:   121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
             +++LVGNKVD+ESER VS++EGI  A+E  C+FLECSA+TR NVEQCFEEL LKI++ PS
Sbjct:   121 VRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPS 180

Query:   181 LLSEGSSGVKKNIFKESPPQNDASTTGCCS 210
             LL EGSS VK+NI K+ P     + +GCCS
Sbjct:   181 LLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0030742 "GTP-dependent protein binding" evidence=IPI

GO:0080115 "myosin XI tail binding" evidence=IPI

TAIR|locus:2085084 RABC2b "RAB GTPase homolog C2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 140/211 (66%), Positives = 169/211 (80%)

Query:     1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
             M SS+ Q  +D  FK+LLIGDSGVGKS+LLLSF S + E+L+PTIGVDFKIK + + GK+
Sbjct:     1 MGSSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKR 60

Query:    61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             +KL IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NLADIWAKEI+LYSTN DC
Sbjct:    61 LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 120

Query:   121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
             IK+LVGNKVD+ESER VS++EG+  A++  CLF ECSA+TR NV  CFEEL LKI++ PS
Sbjct:   121 IKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPS 180

Query:   181 LLSEGSSGVKKNIFKESPPQNDASTTGCCSS 211
             LL EGSS VK+       P   A    CCSS
Sbjct:   181 LLEEGSSSVKRK------PDYRAHQGRCCSS 205

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040801-185 rab18b "RAB18B, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 114/199 (57%), Positives = 146/199 (73%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +A+ G + KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
             FRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK++
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKDN 128

Query:   134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEG--SSGVKK 191
              R V + EG+ FAR++  LF+E SAKTR  V+  FEELV KIL TP L      + GV+ 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGVQ- 186

Query:   192 NIFKESPPQNDASTTGCCS 210
                 ++ PQ   +  G CS
Sbjct:   187 --LSDNEPQRQGACGGYCS 203

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0001654 "eye development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q5ZLG1 RAB18 "Ras-related protein Rab-18" [Gallus gallus (taxid:9031)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 116/199 (58%), Positives = 145/199 (72%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKEN 128

Query:   134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL-SEGSS-GVKK 191
              R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L  SE  + GVK 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQNKGVKL 187

Query:   192 NIFKESPPQNDASTTGCCS 210
             +  +E       +  G CS
Sbjct:   188 SNKEEG--HGGGACGGYCS 204

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|Q9NP72 RAB18 "Ras-related protein Rab-18" [Homo sapiens (taxid:9606)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 116/199 (58%), Positives = 145/199 (72%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL-SEGSS-GVKK 191
              R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L  SE  + GVK 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKL 187

Query:   192 NIFKESPPQNDASTTGCCS 210
             +  +E   Q   +  G CS
Sbjct:   188 SHREEG--QGGGACGGYCS 204

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=NAS

GO:0006897 "endocytosis" evidence=NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=NAS

UNIPROTKB|Q5R5H5 RAB18 "Ras-related protein Rab-18" [Pongo abelii (taxid:9601)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 116/199 (58%), Positives = 145/199 (72%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL-SEGSS-GVKK 191
              R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L  SE  + GVK 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKL 187

Query:   192 NIFKESPPQNDASTTGCCS 210
             +  +E   Q   +  G CS
Sbjct:   188 SHREEG--QGGGACGGYCS 204

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:102790 Rab18 "RAB18, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 116/199 (58%), Positives = 146/199 (73%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL-SEGSS-GVKK 191
              R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L  SE  + GVK 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKL 187

Query:   192 NIFKESPPQNDASTTGCCS 210
             +  +ES  +   +  G CS
Sbjct:   188 SHREES--RGGGACGGYCS 204

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

UNIPROTKB|Q0IIG8 RAB18 "Ras-related protein Rab-18" [Bos taurus (taxid:9913)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 116/199 (58%), Positives = 144/199 (72%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL-SEGSS-GVKK 191
              R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L  SE  + GVK 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKL 187

Query:   192 NIFKESPPQNDASTTGCCS 210
                +E   Q   +  G CS
Sbjct:   188 THREEG--QGGGACGGYCS 204

GO:0019003 "GDP binding" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0001654 "eye development" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|I3LC07 RAB18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 116/199 (58%), Positives = 144/199 (72%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN 128

Query:   134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL-SEGSS-GVKK 191
              R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L  SE  + GVK 
Sbjct:   129 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKL 187

Query:   192 NIFKESPPQNDASTTGCCS 210
                +E   Q   +  G CS
Sbjct:   188 THREEG--QGGGACGGYCS 204

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P11620	YPT1_SCHPO	No assigned EC number	0.5099	0.9431	0.9802	yes	no
Q05974	RAB1A_LYMST	No assigned EC number	0.5072	0.9620	0.9902	N/A	no
Q5ZLG1	RAB18_CHICK	No assigned EC number	0.6166	0.8293	0.8495	yes	no
Q9TVU5	RAB1_THEPA	No assigned EC number	0.5204	0.8009	0.7681	yes	no
Q5EB77	RAB18_RAT	No assigned EC number	0.5728	0.8909	0.9126	yes	no
Q05737	YPTM2_MAIZE	No assigned EC number	0.5049	0.9431	0.9802	N/A	no
Q0IIG8	RAB18_BOVIN	No assigned EC number	0.6272	0.7867	0.8058	yes	no
Q54GY8	RAB18_DICDI	No assigned EC number	0.4729	0.9383	0.9801	yes	no
Q01890	YPT1_PHYIN	No assigned EC number	0.5245	0.9241	0.9701	N/A	no
P36862	YPTV3_VOLCA	No assigned EC number	0.5929	0.9289	0.9655	N/A	no
P62822	RAB1A_CANFA	No assigned EC number	0.5169	0.9620	0.9902	yes	no
P33723	YPT1_NEUCR	No assigned EC number	0.5221	0.9383	0.9753	N/A	no
Q6DHC1	RB18B_DANRE	No assigned EC number	0.575	0.9099	0.9365	yes	no
Q4R8X3	RAB1B_MACFA	No assigned EC number	0.5294	0.9241	0.9701	N/A	no
P22125	RAB1_DIPOM	No assigned EC number	0.5392	0.9289	0.9702	N/A	no
Q39571	YPTC1_CHLRE	No assigned EC number	0.5339	0.9241	0.9605	N/A	no
Q9NP72	RAB18_HUMAN	No assigned EC number	0.6272	0.7867	0.8058	yes	no
O23657	RABC1_ARATH	No assigned EC number	0.87	0.9478	0.9433	yes	no
P35293	RAB18_MOUSE	No assigned EC number	0.58	0.9146	0.9368	yes	no
Q5R5H5	RAB18_PONAB	No assigned EC number	0.6272	0.7867	0.8058	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-115
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-102
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-89
pfam00071	162	pfam00071, Ras, Ras family	3e-80
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-79
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-78
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	7e-74
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	7e-66
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	8e-63
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-59
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-57
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	5e-56
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-55
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-55
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-54
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-51
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-51
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-50
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	7e-50
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-49
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-49
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-47
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-46
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	4e-46
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-45
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-45
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-44
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	8e-44
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-41
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-39
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-38
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-37
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-36
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-36
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	6e-36
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	6e-36
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-34
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-34
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-34
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	6e-34
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	8e-34
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-33
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-33
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-33
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	9e-33
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	7e-32
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-30
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-29
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-28
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-28
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-28
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-28
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-27
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-27
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-27
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	8e-27
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-26
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-26
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-26
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-25
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-25
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-24
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	5e-24
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	7e-24
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-22
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	5e-22
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-21
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	4e-21
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-20
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-19
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	9e-19
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-18
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-18
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	5e-18
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	4e-17
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-16
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	7e-15
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	9e-15
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	1e-14
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-14
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-13
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	5e-12
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	7e-12
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-11
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	3e-11
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	6e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-11
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-10
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-10
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-10
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-09
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-09
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	3e-08
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-08
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	4e-08
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-08
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	4e-07
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	9e-06
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-05
cd00880	161	cd00880, Era_like, E	2e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	4e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	9e-05
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	1e-04
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	2e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	3e-04
cd09915	175	cd09915, Rag, Rag GTPase subfamily of Ras-related	0.001
cd11384	286	cd11384, RagA_like, Rag GTPase, subfamily of Ras-r	0.001
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	0.002
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	0.003

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  327 bits (840), Expect = e-115
 Identities = 147/211 (69%), Positives = 178/211 (84%), Gaps = 1/211 (0%)

Query: 1   MASSTSQQE-FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK 59
           M SS+ Q   +D  FK+LLIGDSGVGKS+LL+SF S + E+L+PTIGVDFKIK + +GGK
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           ++KL IWDTAGQERFRTLTSSYYR AQGII+VYDVTRR+TFTNL+D+W KE++LYSTNQD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD 120

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
           C+K+LVGNKVD+ESER VS++EG+  A+E+GCLFLECSAKTR NVEQCFEEL LKI++ P
Sbjct: 121 CVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180

Query: 180 SLLSEGSSGVKKNIFKESPPQNDASTTGCCS 210
           SLL EGS+ VK+NI K+ P        GCCS
Sbjct: 181 SLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  291 bits (746), Expect = e-102
 Identities = 116/163 (71%), Positives = 137/163 (84%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+LLIGDSGVGKS+LLL FT DTF+E LS TIGVDFK+K V + GKK+KLAIWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFRTLTSSYYRGAQG+I+VYDVTRRDTF NL D W  E+D YSTN D +K+LVGNK+DKE
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V+++EG  FAR++  LF+E SAKTR+ V+Q FEELV KI
Sbjct: 120 N-REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  259 bits (664), Expect = 2e-89
 Identities = 92/166 (55%), Positives = 119/166 (71%), Gaps = 3/166 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK++LIGDSGVGKS+LL  FT   F E    TIGVDFK K + + GK++KL IWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR++TSSYYRGA G ++VYD+T R++F NL + W KE+  Y+ + + + +LVGNK D E
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLEN-WLKELREYA-SPNVVIMLVGNKSDLE 118

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
            +R VS++E   FA E+G  F E SAKT  NVE+ FEEL  +IL  
Sbjct: 119 EQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  236 bits (604), Expect = 3e-80
 Identities = 90/164 (54%), Positives = 114/164 (69%), Gaps = 3/164 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD GVGKS+LL+ FT + F EE  PTIGVDF  K + + GK +KL IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           FR L   YYRGAQG ++VYD+T RD+F N+   W +EI  ++   +   +LVGNK D E 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKK-WLEEILRHADE-NVPIVLVGNKCDLED 118

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           +RVVS +EG   A+E G  F+E SAKT  NVE+ FEEL  +IL 
Sbjct: 119 QRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  234 bits (599), Expect = 2e-79
 Identities = 91/160 (56%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK++LIGDSGVGK++LLL F  + F E    TIGVDFK K + + GKK+KL IWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR++TSSYYRGA G I+VYDVT R++F NL   W  E+  Y+   +   +LVGNK D E
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDK-WLNELKEYA-PPNIPIILVGNKSDLE 118

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
            ER VS +E   FA+E G LF E SAKT  NV++ FE L 
Sbjct: 119 DERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  231 bits (591), Expect = 3e-78
 Identities = 100/168 (59%), Positives = 124/168 (73%), Gaps = 3/168 (1%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           DYLFKLLLIGDSGVGKS LLL F+ D+F      TIG+DFKI+ + L GKK+KL IWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T+SYYRGA GII+VYD+T   +F N+ + W + ID ++ ++D  ++LVGNK 
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKN-WMRNIDEHA-SEDVERMLVGNKC 118

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           D E +RVVSK+EG   AREYG  FLE SAK  +NVE+ F  L   IL 
Sbjct: 119 DMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  220 bits (562), Expect = 7e-74
 Identities = 97/167 (58%), Positives = 117/167 (70%), Gaps = 3/167 (1%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           YLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y  +++  KLLVGNK D
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCD 118

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
              ++VV   E  +FA E G  FLE SAK   NVE+ F  +  +I  
Sbjct: 119 LTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKK 165

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  200 bits (510), Expect = 7e-66
 Identities = 79/166 (47%), Positives = 112/166 (67%), Gaps = 3/166 (1%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTA 69
           DYLFK++LIGDSGVGKS LL  FT + F   S  TIGV+F  + + + GK +K  IWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQER+R +TS+YYRGA G ++VYD+T++ TF N+ + W KE+  ++ + + + +LVGNK 
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHA-DSNIVIMLVGNKS 118

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           D    R V  +E   FA + G  F+E SA    NVE+ F++L+ +I
Sbjct: 119 DLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  192 bits (489), Expect = 8e-63
 Identities = 86/169 (50%), Positives = 117/169 (69%), Gaps = 3/169 (1%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDT 68
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQE FR++T SYYRGA G ++VYD+TRR+TF +L   W ++   +S +   I +L+GNK
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTI-MLIGNK 118

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
            D ES R VS +EG  FARE+G +F+E SAKT  NVE+ F     +I D
Sbjct: 119 CDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  182 bits (464), Expect = 6e-59
 Identities = 74/164 (45%), Positives = 100/164 (60%), Gaps = 3/164 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GDS VGKS+++L F  + F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+R+L   YYRGA   I+VYD+T  ++F   A  W KE+  +    + +  L GNK D E
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHG-PPNIVIALAGNKADLE 119

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           S+R VS +E  ++A E G LF+E SAKT  NV + F E+  K+ 
Sbjct: 120 SKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  178 bits (453), Expect = 6e-57
 Identities = 96/209 (45%), Positives = 129/209 (61%), Gaps = 17/209 (8%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIW 66
           +++D+LFKLL+IGDSGVGKS+LLL F  +TF      TIGVDFKI+ V + G+++KL IW
Sbjct: 1   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIW 60

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLV 125
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W +EI+    N D + K+LV
Sbjct: 61  DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKR-WLQEIE---QNCDDVCKVLV 116

Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ---CFEELVL--KILDTPS 180
           GNK D    +VV  ++   FA + G    E SAK  +NVE+   C  ELVL  K  +   
Sbjct: 117 GNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAK 176

Query: 181 LLSEGSSGVKKNIFKESPPQNDASTTGCC 209
              +  + V K       P+N      CC
Sbjct: 177 QQQQQQNDVVKL------PKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  175 bits (444), Expect = 5e-56
 Identities = 86/165 (52%), Positives = 109/165 (66%), Gaps = 3/165 (1%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+K+KL IWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN + +  L+GNK D
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKAD 118

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            E++R V+ +E   FA E G LFLECSAKT  NVE  F E   KI
Sbjct: 119 LEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  175 bits (445), Expect = 1e-55
 Identities = 91/210 (43%), Positives = 126/210 (60%), Gaps = 12/210 (5%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDT 68
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + +  K +KL IWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQE FR++T SYYRGA G ++VYD+TRR+TF +LA  W ++   ++ N +   +L+GNK
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNK 120

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF----EELVLKILDTPSLLSE 184
            D    R VS +EG  FA+E+G +F+E SAKT  NVE+ F     ++  KI D    +S 
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSN 180

Query: 185 GSSGVKKNIFKESPPQNDASTT-----GCC 209
            S G+K               T     GCC
Sbjct: 181 ESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  173 bits (440), Expect = 2e-55
 Identities = 77/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIW 66
           +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL IW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y+ N+  I +LVG
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYANNK-VITILVG 119

Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           NK+D    R VS++   +F+      +LE SAK   NVE+ F +L  +++
Sbjct: 120 NKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  171 bits (435), Expect = 1e-54
 Identities = 80/163 (49%), Positives = 107/163 (65%), Gaps = 4/163 (2%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D+LFK++LIGDS VGK+ ++  F S TF E    TIGVDF +K + + GK++KL IWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T SYYR A G I+ YD+TRR +F ++   W +E++ Y    + + LL+GNK 
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKC 118

Query: 130 DKESERVVSKKEGIDFAREYGCLF-LECSAKTRVNVEQCFEEL 171
           D E +R V  +E    A  YG L  LE SAK   NVE+ F  +
Sbjct: 119 DLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLM 161

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  162 bits (412), Expect = 3e-51
 Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 5/160 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK++L+G+  VGK++L+L +  + F E    T    F  K V +GGK++ LAIWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDK 131
           R+  L   YYR A G I+VYD+T  D+F      W KE  L     + I L +VGNK+D 
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQK-VKKWIKE--LKQMRGNNISLVIVGNKIDL 117

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
           E +RVVSK E  ++A+  G    E SAKT   +E+ F  L
Sbjct: 118 ERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  163 bits (415), Expect = 5e-51
 Identities = 83/211 (39%), Positives = 127/211 (60%), Gaps = 14/211 (6%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALG-GKKMKLAIWDTA 69
           Y F+L++IGDS VGKS+LL  FT   F E+S PT+GVDF  + + +  G ++KL +WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFR++T SYYR + G+++V+D+T R++F ++ D W +E   +      + +LVG+K 
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKC 119

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI---LDTPSLLSE-G 185
           D ES+R V+++E    A++ G  ++E SA+T  NVE+ FE L  +I   +    L +  G
Sbjct: 120 DLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDG 179

Query: 186 SSGVKKNI-------FKESPPQNDASTTGCC 209
             GVK           +E  P   +    CC
Sbjct: 180 WDGVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  161 bits (408), Expect = 1e-50
 Identities = 80/166 (48%), Positives = 111/166 (66%), Gaps = 3/166 (1%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           ER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +LVGNK D 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILVGNKCDM 118

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           E ERVVS + G   A + G  F E SAK  +NV+Q FE LV  I D
Sbjct: 119 EDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  159 bits (403), Expect = 7e-50
 Identities = 79/163 (48%), Positives = 106/163 (65%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +KL IWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR++T SYYRGA G ++VYD+T R++F  L + W  +    ++  D + +LVGNK D E
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTN-WLTDARTLAS-PDIVIILVGNKKDLE 118

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +R V+  E   FA+E G LFLE SA T  NVE+ F +    I
Sbjct: 119 DDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  158 bits (401), Expect = 2e-49
 Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            KL+ +GD  VGK++++  F  DTF+     TIG+DF  K + +  K ++L +WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR+L  SY R +   ++VYD+T R +F N  D W  ++       D I +LVGNK D  
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRD-ERGNDVIIVLVGNKTDLS 118

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +R VS +EG   A+E   +F+E SAK   NV+Q F+++   +
Sbjct: 119 DKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  159 bits (403), Expect = 2e-49
 Identities = 84/164 (51%), Positives = 120/164 (73%), Gaps = 4/164 (2%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GKK++L IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y++ +D   LLVGNK+D E+
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLLVGNKLDCET 119

Query: 134 ERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKIL 176
           +R +++++G  FA++  G  F E SAK   NV++ F +LV  IL
Sbjct: 120 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 163

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  154 bits (391), Expect = 2e-47
 Identities = 85/215 (39%), Positives = 129/215 (60%), Gaps = 16/215 (7%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
            E+DYLFK++LIGDSGVGKS +L  FT + F  E   TIGV+F  + + + GK +K  IW
Sbjct: 7   HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQER+R +TS+YYRGA G ++VYD+T+R TF N+   W +E+  ++ + + + ++ G
Sbjct: 67  DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAG 124

Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGS 186
           NK D    R V++++G   A + G  FLE SA    NVE+ F+ ++L+I     ++S+ +
Sbjct: 125 NKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIY---HIISKKA 181

Query: 187 SGVKKNIFKESPPQ-------NDASTT---GCCSS 211
              ++       P         D S     GCCS+
Sbjct: 182 LAAQEAAANSGLPGQGTTINVADTSGNNKRGCCST 216

Length = 216

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  151 bits (383), Expect = 2e-46
 Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 17/202 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           FK++L+GDSGVGK+ LL+ F    F       T+G+ F  K V + G K+KL IWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           ERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D + +L+GNK D 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYA-QSDVVIMLLGNKADM 118

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF----EELVLKILDTPSLLSEGSS 187
             ERVV +++G   A+EYG  F+E SAKT +NVE  F    +EL  + ++ P    E   
Sbjct: 119 SGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQP---DEPKF 175

Query: 188 GVKKNIFKESPPQNDASTTGCC 209
            ++  + K+        ++GCC
Sbjct: 176 KIQDYVEKQK------KSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  149 bits (379), Expect = 4e-46
 Identities = 70/162 (43%), Positives = 96/162 (59%), Gaps = 3/162 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++G  GVGKS L + F S  F EE  PTI  D   K + + G+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F  +   Y R   G I+VY +T R++F  + +I  ++I      +D   +LVGNK D E+
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIR-EQILRVKDKEDVPIVLVGNKCDLEN 118

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ER VS +EG   A E+GC FLE SAKT +N+++ F  LV +I
Sbjct: 119 ERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  148 bits (376), Expect = 1e-45
 Identities = 68/163 (41%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F ++  PTI  D   K + + G+   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            F  +   Y R  +G ++VY +T R +F  +     + + +   +   I +LVGNK D E
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI-VLVGNKCDLE 118

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           SERVVS +EG + AR++GC FLE SAK RVNV++ F +LV +I
Sbjct: 119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  147 bits (373), Expect = 4e-45
 Identities = 68/163 (41%), Positives = 99/163 (60%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F +E  PTI  D   K + + G+   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            F  +   Y R  +G ++VY +T R +F  +A    + + +   +   I +LVGNK D E
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPI-VLVGNKCDLE 120

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           +ERVVS +EG + AR++GC FLE SAK R+NV++ F +LV +I
Sbjct: 121 NERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  144 bits (366), Expect = 4e-44
 Identities = 63/163 (38%), Positives = 101/163 (61%), Gaps = 6/163 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + L IWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
           RF++L  ++YRGA   ++VYDVT   +F +L D W  E  + ++ +D      +++GNK+
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 130 DKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEEL 171
           D E +R VS K+   + +  G + + E SAK  +NV+Q FE +
Sbjct: 120 DLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETI 162

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  143 bits (363), Expect = 8e-44
 Identities = 74/164 (45%), Positives = 108/164 (65%), Gaps = 3/164 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           F+LLLIGDSGVGK+ LL  FT + F      TIGVDFK+K + + G K+++ IWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+E
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEE 118

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            +R V  ++G   A+EYG  F E SA T  N+++ F  L   +L
Sbjct: 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVL 162

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  138 bits (349), Expect = 2e-41
 Identities = 69/176 (39%), Positives = 106/176 (60%), Gaps = 16/176 (9%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV--------ALGGKK 60
           +DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V           GK 
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 61  MK--LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYST 116
            +  L +WDTAGQERFR+LT++++R A G ++++D+T   +F N+ + W  ++    Y  
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRN-WMSQLQAHAYCE 119

Query: 117 NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           N D +  L+GNK D   +R VS+++  + A +YG  + E SA T  NVE+  E L+
Sbjct: 120 NPDIV--LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  133 bits (337), Expect = 3e-39
 Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 20/220 (9%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           F   FK++++GD GVGK+TLL     D F E   PTIG     K +    + +KL +WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQE +R+L   YYRGA GI++VYD T R++   L + W +E+   + +   I LLVGNK
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPI-LLVGNK 120

Query: 129 VDKESERVVSKKEGIDFAREYGCL---------------FLECSAK--TRVNVEQCFEEL 171
           +D   E+  S++      RE   L                LE SAK  T  NV + F+EL
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 172 VLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCSS 211
           + K+L+    L   +   +      +P +  A  +  C  
Sbjct: 181 LRKLLEEIEKLVLKNELRQL-DRLNNPIEQAALASFNCVL 219

Length = 219

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  129 bits (325), Expect = 5e-38
 Identities = 63/167 (37%), Positives = 92/167 (55%), Gaps = 6/167 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK+++IGDS VGK+ L   F +  F E    TIGVDF+ + V + G+++K+ +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 73  RFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFR ++   YYR    ++ VYDVT   +F +L   W +E + +S   +  ++LVGNK D 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAK---TRVNVEQCFEELVLKI 175
             +  V       FA  +     E SAK      +VE  F  L  K+
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  128 bits (325), Expect = 1e-37
 Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 9/203 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQ 71
           FK+L+IGD GVGK++++  +    F +    TIGVDF +K +       ++L +WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID---LYSTNQDCIKLLVGNK 128
           ERF  +T  YY+GA G I+V+DVTR  TF      W  ++D        +    LL+ NK
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEA-VLKWKADLDSKVTLPNGEPIPALLLANK 119

Query: 129 VDKESERVVSKKEGID-FAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTPSLLSEGS 186
            D + ER+    E +D F +E G + + E SAK  +N+E+    LV  IL     L    
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPE 179

Query: 187 SGVKKNIFKESPPQNDASTTGCC 209
                 I  +       S   CC
Sbjct: 180 PDEDNVIDLKQETTTSKS-KSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  124 bits (314), Expect = 2e-36
 Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V + G++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +   Y +  QG ++VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 119

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            ERVV K++G + AR++GC FLE SAK ++NV + F +LV +I
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  124 bits (313), Expect = 5e-36
 Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 8/172 (4%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP---TIGVDFKIKHVALGGKKMKLA 64
           + +DYL K LL+GDS VGK  +L S    + E  SP    +G+D+K   + L G+++KL 
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQ 58

Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           +WDT+GQ RF T+  SY RGAQGII+VYD+T R +F  + D W KEID ++      K+L
Sbjct: 59  LWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPG--VPKIL 115

Query: 125 VGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           VGN++    +R V+ ++   +A   G  F E S     N+ + F EL   +L
Sbjct: 116 VGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  123 bits (312), Expect = 6e-36
 Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 16/171 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y      ++ + V    +F N+   W  EI  Y    +   +LVG K+D   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY--CPNVPIILVGTKIDLRD 118

Query: 131 --------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
                   ++ ++ ++ +EG   A+E G + ++ECSA T+  +++ F+E +
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAI 169

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  123 bits (311), Expect = 6e-36
 Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 3/160 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F  +  PTI  D   K   + G+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            F  +   Y R  +G ++V+ VT R +F    D +  +I       +   +LVGNK D E
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSF-EEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
            +R VS++EG + AR+    ++E SAK RVNV++ F +LV
Sbjct: 121 HQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLV 160

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  121 bits (305), Expect = 1e-34
 Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD GVGK+ L +    + F E   PTI   ++ K V + G+   L + DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEE 59

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW-----AKEIDLYSTNQDCIKLLVGNK 128
           +  L   + R  +G I+VY +T R TF  +          K+     +  D   ++VGNK
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD----ESAADVPIMIVGNK 115

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            DK  ER VS +EG   AR  GC F+E SAKT VNVE+ F  LV  +
Sbjct: 116 CDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  120 bits (302), Expect = 1e-34
 Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 7/165 (4%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++L+GD GVGKS+L+  + ++ F+  L  TIGV+F  K + + G  + L IWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERFR+L + +YRG+   ++ + V    +F NL+  W KE   Y+  ++      +++GNK
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNK 123

Query: 129 VDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
           +D   ER VS +E   + R+ G   + E SAK   NV   FEE V
Sbjct: 124 IDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 167

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  120 bits (302), Expect = 1e-34
 Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++ +G+SGVGKS ++  +    F  +  PTIG+D+ +K V++  K++++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ----DCIKLLVGNKV 129
           +  + + +Y+  QG+++VYDVT R +F  L D W KE+           + + ++  NK+
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           D    R VS+ EG  +A   G  + E SA T   V + F+ L   I+D
Sbjct: 121 DLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  118 bits (297), Expect = 6e-34
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F ++  PTI  D   K + +  ++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +   Y +  QG  +VY +T + +F +L D+  + + +  T +D   +LVGNK D E
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 119

Query: 133 SERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKI 175
            ERVVSK+EG + AR++G C FLE SAK+++NV++ F +LV +I
Sbjct: 120 DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  118 bits (297), Expect = 8e-34
 Identities = 64/164 (39%), Positives = 100/164 (60%), Gaps = 5/164 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K++++G  GVGKS L L F  D F E+  PT   D   K V L G++++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDK 131
            +  +  +Y+R  +G ++V+ +T  ++FT LA+   + + +     D + L LVGNK D 
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRV--KEDDNVPLLLVGNKCDL 117

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           E +R VS +E  + A ++G  ++E SAKTR NV++ F +LV +I
Sbjct: 118 EDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  118 bits (296), Expect = 2e-33
 Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 19/198 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F  + F +E  PTI   ++ K   +  +   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDK 131
            +  +   Y R  QG + VY +T R +F  +A    +E  L   ++D + + LVGNK D 
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASF--REQILRVKDKDRVPMILVGNKCDL 122

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKK 191
           +SER VS  EG + A+ +G  FLE SAK RVNV++ F ELV +I              +K
Sbjct: 123 DSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI--------------RK 168

Query: 192 NIFKESPPQNDASTTGCC 209
            + ++ P Q      G C
Sbjct: 169 YLKEDMPSQKQKKKGGLC 186

Length = 189

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  116 bits (293), Expect = 3e-33
 Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 3/164 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++++G  GVGKS L + F S TF E+  PTI  DF  K + +      L I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F ++   Y +  QG I+VY +  + TF ++  +   +I      +    +LVGNKVD E
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPM-RDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           SER VS  EG   A E+GC F+E SAK++  V + F E+V ++ 
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  117 bits (295), Expect = 3e-33
 Identities = 65/162 (40%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F E   PTI   F  K +   G++  L I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  L   Y  G  G I+VY VT R +F  +  I+ K +D+       I +LVGNK D   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI-VLVGNKSDLHM 120

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ER VS +EG   A  +G  FLE SAK   NVE+ FE L+ +I
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  115 bits (290), Expect = 9e-33
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 4/163 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI  D   K V + G+   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +  R +F ++   + ++I     + D   +LVGNK D  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLA 119

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R VS ++G D A+ YG  ++E SAKTR  VE+ F  LV +I
Sbjct: 120 A-RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  113 bits (285), Expect = 7e-32
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 17/175 (9%)

Query: 16  LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           L+++GD  VGK+ LL+ +T++ F E+  PT+  ++    V + GK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDY 59

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD---- 130
             L    Y      ++ + V    +F N+ + W  E+  +  N   I  LVG K+D    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPII--LVGTKLDLRND 117

Query: 131 --------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
                   K+ +  V+ ++G   A+  G + +LECSA T+  V + FEE +   L
Sbjct: 118 KSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  109 bits (275), Expect = 2e-30
 Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVD-FKIKHVALGGKKMKLAIWDTAGQ 71
           FKL+L+GD G GK+T +    +  FE +   T+GV+   +      GK ++  +WDTAGQ
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGK-IRFNVWDTAGQ 59

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E+F  L   YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD 
Sbjct: 60  EKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 116

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
           +  +V  K + I F R+    + E SAK+  N E+ F  L  K+L  P+L
Sbjct: 117 KDRKV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNL 164

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  108 bits (270), Expect = 1e-29
 Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++++G  GVGKS + + F S +F +   PTI   +K +   +  +   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQA 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            F  +   Y R  +G I+ Y VT R +F   ++ + + I      +D   +LVGNKVD E
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASE-FKELITRVRLTEDIPLVLVGNKVDLE 120

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +R V+ +EG + ARE+ C F E SA  R  ++  F  LV +I
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  105 bits (265), Expect = 1e-28
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 22/179 (12%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D   K++++GD G GK+ LL+ +   +F EE  PT+  ++        GK ++LA+WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVG 126
           GQE +  L    Y     I++ Y V    +  N+ D W  E+     N  C     +LVG
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-----NHFCPGTPIVLVG 115

Query: 127 NKVD--KESERV----------VSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFEELV 172
            K D  K+   V          V+ ++G   A+  G   ++ECSAK   NV++ F+  +
Sbjct: 116 LKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAI 174

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  105 bits (265), Expect = 2e-28
 Identities = 70/204 (34%), Positives = 100/204 (49%), Gaps = 27/204 (13%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGV-----DFKIKHV 54
           MA    Q      FKL+++GD G GK+T +    +  FE +  PTIGV     DF     
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF---FT 57

Query: 55  ALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY 114
             G  K++   WDTAGQE+F  L   YY   Q  I+++DVT R T+ N+   W +  DL 
Sbjct: 58  NCG--KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHR--DLC 112

Query: 115 STNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174
              ++   +L GNKVD ++ +V  K + + F R+    + E SAK+  N E+ F  L  K
Sbjct: 113 RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170

Query: 175 ILDTPSLLSEGSSGVKKNIFKESP 198
           +   P+L            F ESP
Sbjct: 171 LAGDPNL-----------HFVESP 183

Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  105 bits (264), Expect = 3e-28
 Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD GVGK+T +    +  FE +  PT+GV+            +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  L   YY   Q  I+++DVT R T+ N+ + W +  D+    ++   +LVGNKVD +
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPN-WHR--DIVRVCENIPIVLVGNKVDVK 126

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
             +V  K   I F R+    + + SAK+  N E+ F  L  ++ + P+L
Sbjct: 127 DRQV--KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNL 173

Length = 215

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  103 bits (258), Expect = 4e-28
 Identities = 59/157 (37%), Positives = 86/157 (54%), Gaps = 7/157 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVA-LGGKKMKLAIWDTAGQER 73
           K++L+GDS VGKS L+  F  D +E    +       KH A   GK + +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F+T+ +SYY  A   I+V+DVTR+ T+ NL+  W +E+  Y     CI  +V NK+D + 
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSK-WYEELREYRPEIPCI--VVANKIDLDP 118

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170
             V  K    +FA ++       SA    NV + F++
Sbjct: 119 -SVTQK--KFNFAEKHNLPLYYVSAADGTNVVKLFQD 152

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  102 bits (255), Expect = 1e-27
 Identities = 56/165 (33%), Positives = 99/165 (60%), Gaps = 4/165 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++++G  GVGKS L + F  + F E   PTI   ++ K V + G++  L I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +   Y +  QG ++VY VT   +   L ++  + + +  ++   + +LVGNK D E
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM-VLVGNKADLE 119

Query: 133 SERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            +R VS+++G+  ++++G + F E SA+ R NV++ F +LV +I+
Sbjct: 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  102 bits (256), Expect = 2e-27
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           K++++G   VGK++L+  +    F       TIG  F  K + +G + + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
           R+  ++  YYRGA+  I+ YD+T   +F   A  W KE  L +  + C   L G K D  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFER-AKFWVKE--LQNLEEHCKIYLCGTKSDLI 118

Query: 131 --KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
               S R V   +  DFA E      E S+KT  NV++ F+++
Sbjct: 119 EQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  101 bits (253), Expect = 2e-27
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
            K++++GD  VGKSTLL     +     E  P    ++    +   GK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGN 127
           E +  +   YYR  +  + V+D+        L      E                +LVGN
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDI----VILVLDVEEILEKQTKEIIHHAESGVPIILVGN 117

Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           K+D    + +       FA+  G   +  SA+T  N++  F+ + 
Sbjct: 118 KIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 161

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  101 bits (252), Expect = 4e-27
 Identities = 59/141 (41%), Positives = 84/141 (59%), Gaps = 3/141 (2%)

Query: 36  DTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94
           DTF+     TIG+DF  K + L    ++L +WDTAGQERFR+L  SY R +   I+VYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 95  TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFL 154
           T R +F N    W ++I L    +D I  LVGNK D    R V+ +EG+  A+EY  +F 
Sbjct: 63  TNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120

Query: 155 ECSAKTRVNVEQCFEELVLKI 175
           E SAK   N++  F+++  K+
Sbjct: 121 ETSAKAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  100 bits (250), Expect = 8e-27
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +++++ G  GVGKS+L+L F   TF E   PTI   ++ + ++       L I DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN-QDCIKLLVGNKVDK 131
           +F  +           I+VY +T + +   L  I+    ++   N +    +LVGNK D+
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
              R VS  EG   AR + C F+E SAKT  NV++ F+EL+
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 99.4 bits (248), Expect = 1e-26
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 6/163 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL--GGKKMKLAIWDTAGQ 71
           K++++G+  VGKS+++  F    F ++   TIGVDF  K + L    + ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E F  +T +YYRGAQ  I+V+  T R++F  +   W ++++  +   D   +LV  K+D 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIES-WKEKVE--AECGDIPMVLVQTKIDL 118

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174
             + V++ +E    A+         S K   NV + FE L  K
Sbjct: 119 LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 99.1 bits (247), Expect = 2e-26
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 17  LLIGDSGVGKSTLLLSFTSDTFEELSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERF 74
           +++G  GVGKS+LL +       E+S   G   D  +    L   K+KL + DT G + F
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 75  -----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
                  L     RGA  I++V D T R++  +   +  + +           +LVGNK+
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP----IILVGNKI 116

Query: 130 DKESERVVSKKE-GIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           D   ER V +     + A+  G    E SAKT   V++ FE+L+
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 99.1 bits (247), Expect = 6e-26
 Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 7/200 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQ 71
            K++++GD   GK++L+  F  + F +    TIG+DF  + + L G   + L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC--IKLLVGNKV 129
           +    +   Y  GAQ + +VYD+T   +F NL D W   +   +   +     +LVGNK 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLED-WLSVVKKVNEESETKPKMVLVGNKT 119

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL--DTPSLLSEGSS 187
           D E  R V+ ++   FA+E     +  SAKT   V  CF+ +  ++L         E S 
Sbjct: 120 DLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQ 179

Query: 188 GVKKNIFKESPPQNDASTTG 207
            V K        +       
Sbjct: 180 RVVKADVSRYSERTLREPVS 199

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 96.9 bits (241), Expect = 2e-25
 Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 12/161 (7%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GD  VGK+ L+  F  D F++    TIGVDF+++   + G    L +WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKV 129
           F+ + S+YYRGAQ II+V+D+T   +  +    L D   KE D  S     +  LVG K 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDA-LKENDPSS----VLLFLVGTKK 116

Query: 130 DKES--ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
           D  S  +  + +++ I  ARE    +   SA T  NV   F
Sbjct: 117 DLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 97.7 bits (243), Expect = 3e-25
 Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 46/230 (20%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++L+GD  VGK++LL  +    F++   T+G  F +K          ++IWDTAG+E+F
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQ----WGPYNISIWDTAGREQF 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVD--- 130
             L S Y RGA  +I+ YDV+   +   L     + + L  T N+DC+  +VGNK+D   
Sbjct: 58  HGLGSMYCRGAAAVILTYDVSNVQSLEEL---EDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 131 ----------------KESERVVSKKEGIDFARE---YGCL-----------FLECSAKT 160
                            E +R V+ ++   F +    Y  L             E SAKT
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 161 RVNVEQCFEELVLKILDTPSLLSEGSSG-VKKNIFKESPPQNDASTTGCC 209
             NV++ FE L   +L  P +L++ +     +       P+   S + CC
Sbjct: 175 GYNVDELFEYLFNLVL--PLILAQRAEANRTQGTVNLPNPKR--SKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 94.5 bits (235), Expect = 1e-24
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSD--TFEE-LSPTIGVDFKIKHVAL--GGKKMKLAIWDTA 69
           +  ++GD  VGKS L+  F SD  TF++  + T G D  +K V +      ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQE F  +  + +     + +VYDVT   +F N +  W   +  +S       +LVGNK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSR-WINRVRTHSHGLHTPGVLVGNKC 120

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
           D    R V   +    A+     F E SAK  V  E  F  L
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 93.3 bits (232), Expect = 5e-24
 Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 23/172 (13%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE- 72
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 73  --RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             R R L+   Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 62  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 116

Query: 131 ------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                       K  +  V  +EG   A + G   +LECSAKT+  V + FE
Sbjct: 117 LRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 92.3 bits (230), Expect = 7e-24
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G SGVGKS L + F +  F  E  P +   +  + V + G+++ L I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 74  FRT--LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVD 130
                      R A G ++VY +T R +F  ++ +    I         I  +LVGNK D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQL-IREIKKRDGEIPVILVGNKAD 118

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVN-VEQCFEELV 172
               R VS +EG   A E GCLF E SA      V+  F EL 
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELC 161

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 90.1 bits (223), Expect = 2e-22
 Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 10/166 (6%)

Query: 19  IGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFR 75
           +GD G GK+T +    +  FE+    T+GV+    + H   G   ++  +WDTAGQE+F 
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIRFNVWDTAGQEKFG 58

Query: 76  TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135
            L   YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +
Sbjct: 59  GLRDGYYIQGQCAIIMFDVTARVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVKDRK 115

Query: 136 VVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
           V +K   I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 116 VKAKS--ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 159

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 87.8 bits (218), Expect = 5e-22
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 17/173 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +L+GD  VGK++L++S+T++ +  E  PT   +F +  V + GK ++L + DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG------- 126
           F  L    Y      ++ + V    +F N+++ W  EI  ++     I  LVG       
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII--LVGTQADLRT 118

Query: 127 -----NKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVL 173
                 ++ +  E+ VS+      A + G C ++ECSA T+ N+++ F+  +L
Sbjct: 119 DVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 86.2 bits (213), Expect = 3e-21
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+ +D F EE  PT+  D     V +GGK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + V    +F N+ + W  E+  Y+ N     LL+G ++D  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--VPYLLIGTQIDLR 117

Query: 133 ------------SERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKIL 176
                        E+ ++ ++G   A+E G C ++ECSA T+  ++  F+E ++ IL
Sbjct: 118 DDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 85.9 bits (213), Expect = 4e-21
 Identities = 50/173 (28%), Positives = 94/173 (54%), Gaps = 13/173 (7%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ L+GD+ +GK++L++ +    F EE   T+GV+F  K +++ G ++  +IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F  +     + A  I+ ++D+TR+ T  ++ + W ++      N+  I +LVG K D  +
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQA--RGFNKTAIPILVGTKYDLFA 118

Query: 134 ERVVSKKEGI-DFAREYG------CLFLECSAKTRVNVEQCFEELVLKILDTP 179
           +    ++E I   AR+Y        +F  CS    +NV++ F+ ++ K+ D P
Sbjct: 119 DLPPEEQEEITKQARKYAKAMKAPLIF--CSTSHSINVQKIFKFVLAKVFDLP 169

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 83.8 bits (207), Expect = 2e-20
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GD   GK++LL  FT   F ++  PT+  ++ I  + + G  ++L++WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVD-- 130
           F  L S  Y     I++ + V   D+  N+   W  EI     +   +KL LV  K D  
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEI---RHHCPGVKLVLVALKCDLR 117

Query: 131 -KESERVVSKK-----EGIDFAREYG-CLFLECSAKTRVNVEQCFEEL 171
              +ER          EG+  A+    C +LECSAK    V + F E 
Sbjct: 118 EPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEA 165

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 81.1 bits (200), Expect = 2e-19
 Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 17/176 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQED 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y      ++ + V    +F N+ + W  EI  +        LLVG ++D   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF--LLVGTQIDLRD 119

Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
                    K  ++ ++ + G   AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 80.6 bits (199), Expect = 3e-19
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 17/172 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV---- 129
           +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 119

Query: 130 DKES-ERVVSKK-------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
           DK++ E++  KK       +G+  A+E G + +LECSA T+  ++  F+E +
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 79.5 bits (196), Expect = 9e-19
 Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 15/167 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K + +GD  VGK+ +L+S+TS+TF  +  PT+  +F   +V + G  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQED 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  L    YRGA   ++ + +  + ++ N+   W  E+  Y+     +  LVG K+D   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIV--LVGTKLDLRD 119

Query: 134 ER----------VVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFE 169
           ++           ++  +G +  ++ G   ++ECS+KT+ NV+  F+
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 166

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 6/162 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++++L+GDSGVGKS+L   FT+  +E+ +    G D   + V++ G++  L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
               L  S  +     ++VY VT R +F   +++    I L    Q  D   +LVGNK D
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASEL---RIQLRRARQAEDIPIILVGNKSD 117

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
               R VS +EG   A  + C F+E SA  + NV++ FE +V
Sbjct: 118 LVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIV 159

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 77.2 bits (191), Expect = 4e-18
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 22/168 (13%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV---DFKIKHVALGGKKMKLAIWDTAGQ 71
           ++L++G  G GK+T+L            PTIG      + K+V       K  +WD  GQ
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNV-------KFTVWDVGGQ 53

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYSTNQ--DCIKLLVGN 127
           ++ R L   YY    G+I V D + R+         AK     L +  +      L++ N
Sbjct: 54  DKIRPLWKHYYENTDGLIFVVDSSDRERI-----EEAKNELHKLLNEEELKGAPLLILAN 108

Query: 128 KVDKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           K D     +E  + +  G++  +        CSA T   +++  + L+
Sbjct: 109 KQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLI 156

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 78.0 bits (192), Expect = 5e-18
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK++LL  FT   F EE  PT+  ++ +    + GK ++LA+WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEE 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  L    Y  A  I++ + +   D+  N+   W +E+  Y  N   I  LVG K D   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVI--LVGLKKDLRQ 119

Query: 134 E----------RVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
           E            V  ++    AR  G   ++ECSA T   V+  FE
Sbjct: 120 EAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFE 166

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 75.8 bits (186), Expect = 4e-17
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 17/176 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +++GD  VGK+ LL+ +T++ F +E  PT+  D      A+ G+ + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  L +  Y      I+ + +    ++ N+   W  E+  +  N     LLVG K D  +
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPI--LLVGTKKDLRN 121

Query: 134 ERVVSKK------------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           +    KK            +G   A++   + +LECSA  +  V++ F E V  +L
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 3/170 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           +L+ +G +GVGK+ L+  F  DTFE        +   K   + G K+ + I DT+G   F
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134
             +     +      +VY V   ++F  +  +  + +++       I ++VGNK+D  +E
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPI-VVVGNKIDSLAE 119

Query: 135 RVVSKKEGIDFAR-EYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLS 183
           R V   + +     ++   F+E SAK   NV + F+EL L+  + PS LS
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKEL-LQQANLPSWLS 168

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 68.9 bits (169), Expect = 7e-15
 Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 29/169 (17%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP------TIGVDFKIKHVALGGKKMKLAIWDT 68
           +++LIGD GVGKS+L++S  S+ F E  P      TI  D   + V          I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVP-------TTIVDT 56

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLV 125
           + + + R   ++  R A  I +VY V R  T   +   W   I      +  +K   +LV
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLI-----RRLGVKVPIILV 111

Query: 126 GNKVDKESERVVSKKEGI------DFAREYGCLFLECSAKTRVNVEQCF 168
           GNK D       +  E        +F     C  +ECSAKT +NV + F
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETC--VECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 68.8 bits (169), Expect = 9e-15
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +K  +WD  GQE 
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTTIPTIG--FNVETVTY--KNVKFTVWDVGGQES 70

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
            R L  +Y+     +I V D   RD        L  +  +E        D   L++ NK 
Sbjct: 71  LRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEE-----ELADAPLLILANKQ 125

Query: 130 D 130
           D
Sbjct: 126 D 126

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 30/163 (18%)

Query: 15  KLLLIGDSGVGKSTLL-LSFTSDTFEELSPTIGVDFKIKHVALGG-------------KK 60
           ++L++GDSGVGKS+L+ L     +      TIG    +KH+  G              + 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             + +WD +G ER++   S +Y    G+I V+D+++R T T+L   WA E+    T    
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAP 141

Query: 121 IK-----------LLVGNKVD---KESERVVSKKEGIDFAREY 149
           +            +++GNK D   KE  R  S    +D AR++
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADIAPKEGTR-GSSGNLVDAARQW 183

Length = 334

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 18/170 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++L+GDS  GK+ LL  F  D+F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTAS-FEVDKQRIELSLWDTSGSPY 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  +    Y  +  +++ +D++R +T  ++   W  E+  +  N     LLVG K D  +
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPV--LLVGCKSDLRT 119

Query: 134 E------------RVVSKKEGIDFAREYGCL-FLECSAKT-RVNVEQCFE 169
           +              VS ++G + A++ G   ++ECSAKT   +V   FE
Sbjct: 120 DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 27/168 (16%)

Query: 18  LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76
           L+G    GK+TL+    S  F E+  PT+G  F ++ V  G   +K  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 77  LTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLV-GNKVDK 131
           +   Y RG   I+ V D   R+        L D+  K       + + I LLV GNK D 
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEK------PSLEGIPLLVLGNKNDL 113

Query: 132 ESERVVSKKEGIDFA-------REYGCLFLECSAKTRVNVEQCFEELV 172
                +S  E I+         RE  C  +  SAK + N++   + L+
Sbjct: 114 PGA--LSVDELIEQMNLKSITDREVSCYSI--SAKEKTNIDIVLDWLI 157

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 63.2 bits (154), Expect = 3e-13
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+++IGD G GKS+LL       F  E     G    +  + + G    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADI--WAKEIDLYSTNQDCIKLLVGNK 128
            +     + + A  I++VYD+T R++   ++ +  W   +         I  LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVI--LVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 17/163 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 65

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D  +
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM--LLVGCKSDLRT 123

Query: 134 ERV------------VSKKEGIDFAREYGCL-FLECSAKTRVN 163
           +              VS  +G + A++ G   ++ECSA    N
Sbjct: 124 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 62.1 bits (151), Expect = 7e-12
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 22/173 (12%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ- 71
           ++++++G S VGK+ ++  F    FEE  +PTI  DF  K  ++ G+  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 72  -----ERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLADIWAKEIDLYSTNQD 119
                 R   LT   +      I+V+ +  R++F         + +  +   +    N  
Sbjct: 60  PFPAMRRLSILTGDVF------ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVK 113

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDF-AREYGCLFLECSAKTRVNVEQCFEEL 171
              ++ GNK D++  R V + E       +  C + E SAK   N+++ F  L
Sbjct: 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 21/175 (12%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD----- 67
            ++ ++G  GVGK+ ++  F +  F EE  PT         V L G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 68  ----TAGQE----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL-YSTNQ 118
               TAGQE    RFR L     R ++  I+VYD+   D+F  +  +  + ++   + N+
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQCFEELV 172
           +   ++VGNK D++  R   +       R+ + C +LECSAK   ++   F+EL+
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELL 170

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 11/119 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           +++ +G  G GK+T+L     D F +  PTIG  F ++ V    K +K  IWD  G+ + 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIG--FNVETVEY--KNLKFTIWDVGGKHKL 56

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK---EIDLYSTNQDCIKLLVGNKVD 130
           R L   YY   Q ++ V D + RD  +      AK   E +L    +D + L+  NK D
Sbjct: 57  RPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKEL----RDALLLIFANKQD 111

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 29/148 (19%)

Query: 15  KLLLIGDSGVGKSTLL-LSFTSDTFEELSPTIGVDFKIKHVALGG-----KKMKLAIWDT 68
           K+L++GDSGVGKS+L+ L   +      S T+G    ++H   G      K   + +WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 69  AGQ----ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI---DLYS-----T 116
            G     E  ++  + +Y    GII V+D+T + +  NL   W+ E    D +      T
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYR-WSLEALNRDTFPAGLLVT 120

Query: 117 NQDCIK----------LLVGNKVDKESE 134
           N D             L++G K+D+  E
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPE 148

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +K++++G    GK+T+L  F        SPTIG + +     +  K ++  +WD  GQE 
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE----IVYKNIRFLMWDIGGQES 71

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFT 101
            R+  ++YY     +I+V D T R+   
Sbjct: 72  LRSSWNTYYTNTDAVILVIDSTDRERLP 99

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++ 
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTIPTIG--FNVETVTY--KNISFTVWDVGGQDKI 70

Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R L   YY   QG+I V D   RD
Sbjct: 71 RPLWRHYYTNTQGLIFVVDSNDRD 94

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 57.8 bits (139), Expect = 2e-10
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 18/187 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD   GK+ +L     D + E   PT+  ++    +    ++++L++WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 73

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  +    Y  +  +++ +D++R + F +    W  EI  Y  +     LL+G K D   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRI--LLIGCKTDLRT 131

Query: 131 ---------KESERVVSKKEGIDFAREYGC-LFLECSAKT-RVNVEQCFEELVLKILDTP 179
                     + +  +S ++G   A++ G   +LECSA T   ++   F    L  ++  
Sbjct: 132 DLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKL 191

Query: 180 SLLSEGS 186
           S L++ S
Sbjct: 192 SPLAKKS 198

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 15/121 (12%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++ 
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 66

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWA-KEIDLYSTNQDCIKLLVGNKV 129
           R L   YY G QG+I V D   RD        L  I   +E+      +D + L+  NK 
Sbjct: 67  RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREM------RDALLLVFANKQ 120

Query: 130 D 130
           D
Sbjct: 121 D 121

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQE 72
             ++++G    GK+T+L     + F    PT G + +   V+LG  K +    WD  GQE
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           + R L  SY R   GI+ V D    +     A     +I  +S NQ    L++ NK D  
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEE-AKTELHKITKFSENQGVPVLVLANKQDLP 122

Query: 133 SERVVSKKE 141
           +   VS+ E
Sbjct: 123 NALPVSEVE 131

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GD+  GK+ LL  F  D + E   PT+  ++      +   +++L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTAS-FEIDKHRIELNMWDTSGSSY 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  +    Y  +  +++ +D++R +T  ++   W  E   +  N   +  LVG K+D  +
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLV--LVGCKLDMRT 119

Query: 134 E----RVVSKK--------EGIDFAREYGCL-FLECSAKTRVN 163
           +    R +SK+        +G   AR+ G + ++ECS++   N
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGV---DFKIKHVALGGKKMKLAIWDTAG 70
           KL+L+G  GVGK++L      + F+     T G+   D+KI   A   KK++L +WD  G
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIP--APERKKIRLNVWDFGG 60

Query: 71  QERFRTLTSSYYRGAQGI-IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           QE +   T  ++  ++ + ++V+D+   D  + +   W ++I  +      I  LVG  +
Sbjct: 61  QEIYHA-THQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVI--LVGTHI 116

Query: 130 DKESERVVSKKEGID--FAREYGCLFLECSAKTRVN 163
           D+  +  + KK       A      F+ C     + 
Sbjct: 117 DESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 22/171 (12%)

Query: 17  LLIGDSGVGKSTLL----LSFTSDT----FEELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           L++G    GK+T L      F+ +       +++PT+G++  I  + +G  K +L  WD 
Sbjct: 3   LILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLN--IGTIEVG--KARLMFWDL 58

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
            GQE  R+L   YY  + G+I V D T R+ F      + K I+     +    L++ NK
Sbjct: 59  GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN-NEALEGVPLLVLANK 117

Query: 129 VDKES-------ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
            D          + V      +   R+  CL    SA     VE+  E LV
Sbjct: 118 QDLPDALSVAEIKEVFDDCIALIGRRD--CLVQPVSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++LL+G    GKSTLL            PT+G  F ++ + L  K + L +WD  GQE+ 
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEKM 57

Query: 75 RTLTSSYYRGAQGIIMVYDVTRR 97
          RT+   Y     G++ V D +  
Sbjct: 58 RTVWKCYLENTDGLVYVVDSSDE 80

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++ 
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLAD 105
           R L   Y++  QG+I V D   RD      D
Sbjct: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105

Length = 181

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L  F  +    +SPT+G  F IK +   G   KL IWD  GQ+ 
Sbjct: 15 MRILMLGLDNAGKTTILKKFNGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQKS 70

Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
           R+   +Y+     +I V D + R
Sbjct: 71 LRSYWRNYFESTDALIWVVDSSDR 94

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++ 
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 57

Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R L   Y++  QG+I V D   R+
Sbjct: 58 RPLWRHYFQNTQGLIFVVDSNDRE 81

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G    GK+T+L            PTIG  F ++ V    K +K  +WD  GQ++ 
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTIPTIG--FNVETVEY--KNLKFTMWDVGGQDKL 74

Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R L   YY+   G+I V D   R+
Sbjct: 75 RPLWRHYYQNTNGLIFVVDSNDRE 98

Length = 182

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++LL+G    GK+T+L    S+    ++PT G  F IK+V   G K+ +  WD  GQ + 
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDISHITPTQG--FNIKNVQADGFKLNV--WDIGGQRKI 72

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF 100
           R    +Y+     +I V D   R  F
Sbjct: 73  RPYWRNYFENTDVLIYVIDSADRKRF 98

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 21/138 (15%)

Query: 15  KLLLIGDSGVGKSTLL------------LSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           K+++IG  G GK+T +               +S + +   PT  V      + L      
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTT-VAMDFGSIELDEDT-G 69

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           + ++ T GQERF+ +     RGA G I++ D +R  TF       A+EI  + T+++ I 
Sbjct: 70  VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH------AEEIIDFLTSRNPIP 123

Query: 123 LLVG-NKVDKESERVVSK 139
           ++V  NK D        K
Sbjct: 124 VVVAINKQDLFDALPPEK 141

Length = 187

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  GQ   
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTSI 56

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF-TNLADIWA--KEIDLYSTNQDCIKLLVGNKVDK 131
           R     YY     II V D T RD    + +++ A  +E +L    +D + L+  NK D 
Sbjct: 57  RPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEEL----KDAVLLVFANKQDM 112

Query: 132 E---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
               SE  V++K G+   ++      + SA     +++  + LV
Sbjct: 113 PGALSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLV 156

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++ +G    GK+TLL     D   +  PT+      + + +G   +K   +D  G E+ 
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLH--PTSEELTIGN--VKFTTFDLGGHEQA 76

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R +   Y+    GI+ + D    + F      L  +   E        +   L++GNK+D
Sbjct: 77  RRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDE-----ELANVPILILGNKID 131

Query: 131 KE 132
           K 
Sbjct: 132 KP 133

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 25/127 (19%)

Query: 16  LLLIGDSGVGKSTLL--LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +L++G    GK+T++  L  ++   + + PT+G  F ++    G   +    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKL 123
           +R L   YY+  QGII V D + R          +   N  DI  + I +         L
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPI---------L 108

Query: 124 LVGNKVD 130
              NK+D
Sbjct: 109 FYANKMD 115

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 34/168 (20%), Positives = 56/168 (33%), Gaps = 24/168 (14%)

Query: 18  LIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAG----- 70
           + G   VGKS+LL +        +SP  G   D   K   L      + + DT G     
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLG-PVVLIDTPGLDEEG 60

Query: 71  -QERFRT-LTSSYYRGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
              R R          A  +++V D      +    L  +  +   +         LLV 
Sbjct: 61  GLGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGLLRERGKPV---------LLVL 111

Query: 127 NKVDK--ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           NK+D   ESE     +E            +  SA     +++  +++ 
Sbjct: 112 NKIDLVPESEEEELLRERK-LELLPDLPVIAVSALPGEGIDELRKKIA 158

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 14/124 (11%)

Query: 16  LLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           +L++G  G GK++LL S +S+   E   PT G  F    +      M+L   +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQDAIMELL--EIGGSQNL 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ---DCIKLLVGNKVDK 131
           R     Y  G+QG+I V D    +         A++ +L+   Q   D   +++ NK D 
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLP-----LARQ-ELHQLLQHPPDLPLVVLANKQDL 111

Query: 132 ESER 135
            + R
Sbjct: 112 PAAR 115

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 42/144 (29%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP--------TIGVDFKIKHVALGGKKMKLAIW 66
           K+LL+G  G GKS    S  S  F   SP        TI V+    HV   G  + L +W
Sbjct: 1   KVLLMGLRGSGKS----SMRSIIFSNYSPRDTLRLGATIDVE--QSHVRFLG-NLTLNLW 53

Query: 67  DTAGQERFRTLTSSY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           D  GQ+ F     +      +     +I V+DV  R+        + +++         I
Sbjct: 54  DCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE--------YEEDLATL---VKII 102

Query: 122 KLLVGN-----------KVDKESE 134
           + L              K+D  SE
Sbjct: 103 EALYQYSPNAKVFVLIHKMDLLSE 126

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           KL ++G+   GKS L+  + + ++ +L    G  FK K V + G+   L I D  G    
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFK-KEVLVDGQSHLLLIRDEGGA--- 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134
               + +      +I V+ +    +F  +  +   ++  Y    +   +LVG + D  S 
Sbjct: 58  --PDAQFAGWVDAVIFVFSLEDEASFQTVYRL-YHQLSSYRNISEIPLILVGTQ-DAISA 113

Query: 135 ---RVVSKKEG----IDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
              RV+          D  R   C + E  A   +NVE+ F+E   KI
Sbjct: 114 SNPRVIDDARARQLCADMKR---CSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 28/173 (16%)

Query: 18  LIGDSGVGKSTLLLSFT-------SDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           L+G   VGKSTLL + T       S  F  L P +GV    +     G  +++   D  G
Sbjct: 2   LVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGV---FEF--GDGVDIQII--DLPG 54

Query: 71  --------QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA--KEIDLYSTNQDC 120
                   +     + +  YR    I+ V D +       L D     +E+         
Sbjct: 55  LLDGASEGRGLGEQILAHLYRS-DLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKN 113

Query: 121 IKLLVG-NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
              ++  NK+D  SE  + + +     R      +  SA TR+ +++    + 
Sbjct: 114 KPEMIVANKIDMASENNLKRLKLDKLKRGI--PVVPTSALTRLGLDRVIRTIR 164

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 43/182 (23%), Positives = 66/182 (36%), Gaps = 52/182 (28%)

Query: 14  FKLLLIGDSGVGKSTLLLSF--------------TSDTFEELSPTIGVDFKIKHVALGGK 59
            K+++IG   VGKS+LL +               T D  EE             + L G 
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE------------DINLNG- 264

Query: 60  KMKLAIWDTAGQ-------ERF---RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK 109
            + + + DTAG        ER    R   +     A  ++ V D ++     +L      
Sbjct: 265 -IPVRLVDTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKEDL-----A 316

Query: 110 EIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169
            I+L    +  I  +V NK D     +VSK E        G   +  SAKT   ++   E
Sbjct: 317 LIELLPKKKPII--VVLNKAD-----LVSKIELESEKLANGDAIISISAKTGEGLDALRE 369

Query: 170 EL 171
            +
Sbjct: 370 AI 371

Length = 454

>gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPT----IGVDFKIKHVALGGKK-MKLAIWDTA 69
           KLLL G    GKS    S     F   SP     +     ++H  L       L +WD  
Sbjct: 1   KLLLXGRRRSGKS----SIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGNXTLNLWDCP 56

Query: 70  GQERFRTLTSSY---YRGAQGIIMVYDVTRRDTFTNLADIWAKEID-LYSTNQDCIKLLV 125
           GQ+ F   T      ++    +I V DV  +D +     I AK +   Y  N D    ++
Sbjct: 57  GQDVFFEPTKDKEHIFQXVGALIYVIDV--QDEYLKAITILAKALKQAYKVNPDANIEVL 114

Query: 126 GNKVD-------KESERVVSKKEGIDFAREYGCLFLECS 157
            +KVD       +E +R + ++     + E+G  F   S
Sbjct: 115 IHKVDGLSLDKKEELQRDIXQRLSETLS-EFGLEFPNLS 152

Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175

>gnl|CDD|206744 cd11384, RagA_like, Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 25/123 (20%)

Query: 15  KLLLIGDSGVGKS---TLLLSFTS--DTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           K+LL+G SG GK+   +++ +     DT   L  TI V+    HV   G  + L +WD  
Sbjct: 1   KVLLMGKSGSGKTSMRSIIFANYLARDT-RRLGATIDVEH--SHVRFLG-NLVLNLWDCG 56

Query: 70  GQERF--RTLTS---SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           GQ+ F     TS     +R  + +I V+DV  R+          K++  +   + C++ L
Sbjct: 57  GQDAFMENYFTSQRDHIFRNVEVLIYVFDVESRE--------LEKDLTYF---RSCLEAL 105

Query: 125 VGN 127
             N
Sbjct: 106 RQN 108

RagA and RagB are closely related Rag GTPases (ras-related GTP-binding protein A and B) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr1. These domains function by forming heterodimers with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2, through the carboxy-terminal segments. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 286

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 14 FKLLLIGDSGVGKSTL--------LLSFTSDTFEELSPTIGVDFKIKHVAL--GGKKMKL 63
          F ++++G+SG+GKST         L             T  V+ KI    L   G K+KL
Sbjct: 5  FNIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKL 64

Query: 64 AIWDTAG 70
           + DT G
Sbjct: 65 TVIDTPG 71

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 47/193 (24%), Positives = 69/193 (35%), Gaps = 55/193 (28%)

Query: 19  IGDSGVGKSTL---LLSFTSDTFEELSP----------------TIGVDFKIKHVALGGK 59
           IG    GK+TL   LL  T    +E +                 TI    KI  V+   K
Sbjct: 9   IGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITI----KIAAVSFETK 64

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV-------TRRDTFTNLADIWAKEID 112
           K  + I DT G   F          A G I+V D        TR         + AK + 
Sbjct: 65  KRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTRE------HLLLAKTLG 118

Query: 113 LYSTNQDCIKLLVG-NKVDK----ESERVVSKKEGIDFAREYG-----CLFLECSAKTRV 162
                   + ++V  NK+D+    E E VV ++   +   +YG        +  SA T  
Sbjct: 119 --------VPIIVFINKIDRVDDAELEEVV-EEISRELLEKYGFGGETVPVVPGSALTGE 169

Query: 163 NVEQCFEELVLKI 175
            +++  E L L +
Sbjct: 170 GIDELLEALDLYL 182

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.98
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.97
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
PTZ00099	176	rab6; Provisional	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
PRK15494	339	era GTPase Era; Provisional	99.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
KOG1673	205	consensus Ras GTPases [General function prediction	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK00089	292	era GTPase Era; Reviewed	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
COG1159	298	Era GTPase [General function prediction only]	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.87
PRK05433	600	GTP-binding protein LepA; Provisional	99.87
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.86
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
PRK12317	425	elongation factor 1-alpha; Reviewed	99.85
COG0486	454	ThdF Predicted GTPase [General function prediction	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.85
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.84
COG0218	200	Predicted GTPase [General function prediction only	99.84
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
PRK04004	586	translation initiation factor IF-2; Validated	99.8
PRK12736	394	elongation factor Tu; Reviewed	99.79
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.79
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.79
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.79
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
PRK12735	396	elongation factor Tu; Reviewed	99.78
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.78
COG1084	346	Predicted GTPase [General function prediction only	99.78
CHL00071	409	tufA elongation factor Tu	99.76
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.76
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.75
COG2262	411	HflX GTPases [General function prediction only]	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.74
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.74
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
PLN03126	478	Elongation factor Tu; Provisional	99.73
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.73
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.73
PLN03127	447	Elongation factor Tu; Provisional	99.73
PRK00049	396	elongation factor Tu; Reviewed	99.73
PLN00043	447	elongation factor 1-alpha; Provisional	99.72
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.72
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
COG0536	369	Obg Predicted GTPase [General function prediction	99.72
PRK13351	687	elongation factor G; Reviewed	99.71
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.71
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
PTZ00141	446	elongation factor 1- alpha; Provisional	99.7
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.7
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.7
COG1163	365	DRG Predicted GTPase [General function prediction	99.69
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.69
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.68
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.67
KOG1145	683	consensus Mitochondrial translation initiation fac	99.66
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.65
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.65
PRK09602	396	translation-associated GTPase; Reviewed	99.65
PRK12739	691	elongation factor G; Reviewed	99.65
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.64
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.64
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.64
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.63
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.61
PRK09866	741	hypothetical protein; Provisional	99.59
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.58
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.57
KOG0090	238	consensus Signal recognition particle receptor, be	99.57
PRK00007	693	elongation factor G; Reviewed	99.57
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.56
PRK12740	668	elongation factor G; Reviewed	99.55
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.55
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.55
PRK13768	253	GTPase; Provisional	99.53
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.51
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.5
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.5
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.49
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.48
PRK14845	1049	translation initiation factor IF-2; Provisional	99.47
PTZ00258	390	GTP-binding protein; Provisional	99.47
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.45
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.45
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.45
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.44
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.44
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.43
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.41
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.41
PTZ00416	836	elongation factor 2; Provisional	99.41
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.39
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.39
PRK09601	364	GTP-binding protein YchF; Reviewed	99.39
PRK07560	731	elongation factor EF-2; Reviewed	99.38
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.38
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.37
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.37
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.36
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.34
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.32
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.32
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.28
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.28
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.27
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.27
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.26
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.24
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.23
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.23
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.22
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.22
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.2
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.18
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.17
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.1
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.1
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.07
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.07
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.06
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.06
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.06
KOG0410	410	consensus Predicted GTP binding protein [General f	99.05
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.05
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.05
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.05
PRK00098	298	GTPase RsgA; Reviewed	99.04
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.04
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.03
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.03
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.02
KOG2486	320	consensus Predicted GTPase [General function predi	99.01
PRK12289	352	GTPase RsgA; Reviewed	99.0
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.97
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.94
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.91
PRK12288	347	GTPase RsgA; Reviewed	98.9
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.9
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.9
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.87
COG1161	322	Predicted GTPases [General function prediction onl	98.87
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.86
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.85
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.83
KOG0460	449	consensus Mitochondrial translation elongation fac	98.83
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.81
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.8
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.79
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.78
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.71
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.7
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.68
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.67
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.65
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.65
PRK10416	318	signal recognition particle-docking protein FtsY;	98.61
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.61
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.59
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.59
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.59
KOG1143	591	consensus Predicted translation elongation factor	98.59
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.58
PRK12289	352	GTPase RsgA; Reviewed	98.57
PRK12288	347	GTPase RsgA; Reviewed	98.57
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.57
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.56
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.55
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.54
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.54
PRK14974	336	cell division protein FtsY; Provisional	98.52
PRK13796	365	GTPase YqeH; Provisional	98.52
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.51
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.5
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.5
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.48
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.47
cd03112	158	CobW_like The function of this protein family is u	98.45
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.42
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.38
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.37
PRK13796	365	GTPase YqeH; Provisional	98.37
PRK01889	356	GTPase RsgA; Reviewed	98.36
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.36
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.33
KOG2484	435	consensus GTPase [General function prediction only	98.31
PRK00098	298	GTPase RsgA; Reviewed	98.29
COG1162	301	Predicted GTPases [General function prediction onl	98.28
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.26
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.25
PRK13695	174	putative NTPase; Provisional	98.24
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.21
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.18
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.15
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.11
COG1162	301	Predicted GTPases [General function prediction onl	98.09
TIGR00959	428	ffh signal recognition particle protein. This mode	98.08
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.08
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.08
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.07
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.07
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.07
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.05
PRK10867	433	signal recognition particle protein; Provisional	98.03
COG3523	1188	IcmF Type VI protein secretion system component Va	98.01
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.99
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.97
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.97
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.96
COG0523	323	Putative GTPases (G3E family) [General function pr	97.94
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.88
cd03114	148	ArgK-like The function of this protein family is u	97.87
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.85
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.8
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.78
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.77
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.72
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.72
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.69
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.67
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.67
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.66
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.64
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.6
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.58
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.57
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.56
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.56
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.54
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.51
PRK14737	186	gmk guanylate kinase; Provisional	97.51
PRK08118	167	topology modulation protein; Reviewed	97.5
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.5
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.5
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.46
PRK07261	171	topology modulation protein; Provisional	97.44
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.44
PRK14738	206	gmk guanylate kinase; Provisional	97.44
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.41
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.35
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.35
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.34
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.33
KOG1533	290	consensus Predicted GTPase [General function predi	97.31
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.3
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.3
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.29
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.28
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.28
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.28
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.26
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.25
PRK04195	482	replication factor C large subunit; Provisional	97.24
cd03111	106	CpaE_like This protein family consists of proteins	97.23
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.23
PRK01889	356	GTPase RsgA; Reviewed	97.23
PF00004	132	AAA: ATPase family associated with various cellula	97.21
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.2
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.19
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.18
cd03110	179	Fer4_NifH_child This protein family's function is	97.18
PRK03839	180	putative kinase; Provisional	97.17
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.16
smart00382	148	AAA ATPases associated with a variety of cellular	97.16
PLN02200	234	adenylate kinase family protein	97.16
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.16
PRK06217	183	hypothetical protein; Validated	97.15
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.14
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.14
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.14
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.14
cd02036	179	MinD Bacterial cell division requires the formatio	97.12
COG1161	322	Predicted GTPases [General function prediction onl	97.11
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.09
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.08
PRK14530	215	adenylate kinase; Provisional	97.07
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.07
PRK13949	169	shikimate kinase; Provisional	97.06
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.05
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.04
PRK05480	209	uridine/cytidine kinase; Provisional	97.04
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.04
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.02
PTZ00088	229	adenylate kinase 1; Provisional	97.01
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.01
PRK14532	188	adenylate kinase; Provisional	97.0
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.99
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.98
PRK00625	173	shikimate kinase; Provisional	96.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.95
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.95
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.94
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.94
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.92
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.92
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.91
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.9
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.9

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-43  Score=244.61  Aligned_cols=201  Identities=52%  Similarity=0.852  Sum_probs=181.3

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      ....++.+||+|+|+.|||||.|+.|+..+.+ ..+..|.|.++....+.++++.+.++||||+|+++++.+...+++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            35677999999999999999999999999999 88899999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCc-EEEeccCCCCCH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNV  164 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  164 (211)
                      +++|+|||+++.+||+.+.. |+..+..+. ..++|.++||||+|+.+.+.+..++++.|+..++++ ++++||+++.+|
T Consensus        83 hGii~vyDiT~~~SF~~v~~-Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV  160 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKR-WIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV  160 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHH-HHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence            99999999999999999999 999999998 788999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccC
Q 028292          165 EQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS  210 (211)
Q Consensus       165 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  210 (211)
                      ++.|..|...+..+..........+ .......+.+..+..++||.
T Consensus       161 e~~F~~la~~lk~~~~~~~~~~~~~-~~~~ql~~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  161 EDAFLTLAKELKQRKGLHVKWSTAS-LESVQLKGTPVKKSNGGCCE  205 (205)
T ss_pred             HHHHHHHHHHHHHhcccCCCCCcCC-CCceeeCCCCcccccCCCCC
Confidence            9999999999999888887776533 33333333445555666884

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.4e-43  Score=233.71  Aligned_cols=203  Identities=65%  Similarity=1.069  Sum_probs=186.5

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC-cceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ......+||+++|..|+|||+|+.++....++...+ +.|.++.+..+.+++..+.+.||||+|+++|+.+.+.+++++.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            456688999999999999999999999999955444 5999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++.+++|..+.. |+..+..+..+.++..++|+||.|.+..+.+..++...|++++++.|+++||++.+||+.
T Consensus        86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC  164 (209)
T ss_pred             eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence            9999999999999999955 999999999999999999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccCC
Q 028292          167 CFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCSS  211 (211)
Q Consensus       167 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~  211 (211)
                      .|+.++..+.+-+............++...+..+.....+||||+
T Consensus       165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs~  209 (209)
T KOG0080|consen  165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCSC  209 (209)
T ss_pred             HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccCC
Confidence            999999999999999988888888888775555555555779986

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-41  Score=233.81  Aligned_cols=197  Identities=39%  Similarity=0.672  Sum_probs=172.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...+||+|+|+.+||||||+.|+..+.|.+ ..+|+|.-+....+.+++..+.+.||||+|+++|.++.+.++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            467999999999999999999999999955 5899999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||+++.+||..++. |...+.... .+++-+.+||||+|+.+.+.+..+++..++.+.++.||++||+++.||+++|.
T Consensus        83 vvYDit~~~SF~~aK~-WvkeL~~~~-~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~  160 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKN-WVKELQRQA-SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ  160 (200)
T ss_pred             EEEecccHHHHHHHHH-HHHHHHhhC-CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence            9999999999999999 888888877 48888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccC
Q 028292          170 ELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS  210 (211)
Q Consensus       170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  210 (211)
                      .|.+.+..............+ ........+++....+||+
T Consensus       161 ~Ia~~lp~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  161 AIAEKLPCSDPQERQGLPNRR-QGVDLNSNQEPARPSGCCA  200 (200)
T ss_pred             HHHHhccCccccccccccccc-cceecccCCCCcCcCCcCC
Confidence            999999988776654322222 2222222325666667774

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.2e-40  Score=228.23  Aligned_cols=177  Identities=55%  Similarity=0.931  Sum_probs=167.6

Q ss_pred             CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292            4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY   82 (211)
Q Consensus         4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   82 (211)
                      ++...+.++.+||+++|+++||||+|+.++....+ ..+..+.|.++....+.+++..+.+++|||+|+++++.+...++
T Consensus         3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy   82 (207)
T KOG0078|consen    3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY   82 (207)
T ss_pred             ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence            45556888999999999999999999999999999 78889999999999999999999999999999999999999999


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV  162 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (211)
                      +.++++++|||+++..||+++.. |+..+..+. ..++|.++||||+|+...+.+..+.++.++.++|+.|+++||++|.
T Consensus        83 rgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~  160 (207)
T KOG0078|consen   83 RGAMGILLVYDITNEKSFENIRN-WIKNIDEHA-SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNF  160 (207)
T ss_pred             hhcCeeEEEEEccchHHHHHHHH-HHHHHHhhC-CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCC
Confidence            99999999999999999999999 999999998 6699999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCcc
Q 028292          163 NVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~~~~  182 (211)
                      ||++.|..|.+.++.+....
T Consensus       161 NI~eaF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  161 NIEEAFLSLARDILQKLEDA  180 (207)
T ss_pred             CHHHHHHHHHHHHHhhcchh
Confidence            99999999999999755443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-39  Score=223.14  Aligned_cols=170  Identities=38%  Similarity=0.630  Sum_probs=158.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ..+.+||+++|+.+|||||||+|++...+ ..|..|.|.++....+.+.+.++++++|||+|+++|+.+.+.|++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            34669999999999999999999999999 88999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      |+|||+++..||++... |+..+.......++-+++||||.||.+++++..++....++++++.|.++||+.|.||+.+|
T Consensus        99 viVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF  177 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF  177 (221)
T ss_pred             EEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence            99999999999999999 66666655535568899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028292          169 EELVLKILDTPS  180 (211)
Q Consensus       169 ~~i~~~~~~~~~  180 (211)
                      ..|..++.+...
T Consensus       178 rrIaa~l~~~~~  189 (221)
T KOG0094|consen  178 RRIAAALPGMEV  189 (221)
T ss_pred             HHHHHhccCccc
Confidence            999988887755

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-39  Score=219.57  Aligned_cols=167  Identities=51%  Similarity=0.863  Sum_probs=158.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ....+|++++|+.|||||+|+.+++...| +.+..|.|.++-...+++++..+.++||||.|++.+++....+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            35679999999999999999999999999 77778999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      |||||++++++|.++.. |+..++++. ..+.-+++++||+|+...+.+..+|...|++++++.++++||++++||+++|
T Consensus        83 lLVydit~r~sF~hL~~-wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTS-WLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             EEEEEccchhhHHHHHH-HHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            99999999999999998 888888887 7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028292          169 EELVLKILDT  178 (211)
Q Consensus       169 ~~i~~~~~~~  178 (211)
                      ..+...+++.
T Consensus       161 ~nta~~Iy~~  170 (216)
T KOG0098|consen  161 INTAKEIYRK  170 (216)
T ss_pred             HHHHHHHHHH
Confidence            9999988864

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.3e-38  Score=230.51  Aligned_cols=195  Identities=33%  Similarity=0.600  Sum_probs=165.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +||+++|++|||||||+++|+++.+ ..+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999988 5677888888887788887 7889999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQC  167 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~  167 (211)
                      ||++++++|+.+.. |+..+....   ...++|+++|+||+|+.+.+.+..+++.+++...+ ..++++||++|.|++++
T Consensus        81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999977 666655432   13678999999999997667788889999999998 69999999999999999


Q ss_pred             HHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCccc
Q 028292          168 FEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCC  209 (211)
Q Consensus       168 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  209 (211)
                      |.+|.+.+.+......+.....+............++..+||
T Consensus       160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            999999998887766666665555555555555555566888

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=6.9e-38  Score=229.56  Aligned_cols=205  Identities=70%  Similarity=1.183  Sum_probs=179.2

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      ...+....+||+|+|++|||||||+++|++..+..+.++.+.++....+.+++..+.+.||||||++.+..++..+++++
T Consensus         7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   86 (211)
T PLN03118          7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA   86 (211)
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34566678999999999999999999999998878888888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|+|||++++++|+.+...|...+..+....+.|+++|+||+|+...+.+..++...++...++.++++||+++.|++
T Consensus        87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~  166 (211)
T PLN03118         87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE  166 (211)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999988787777665545678999999999998777778888888888889999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccC
Q 028292          166 QCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS  210 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  210 (211)
                      ++|.+|...+.+.....++.....+.+..++..........+|||
T Consensus       167 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T PLN03118        167 QCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS  211 (211)
T ss_pred             HHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCCC
Confidence            999999999999888887777777777777755555566678887

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.3e-37  Score=225.27  Aligned_cols=163  Identities=52%  Similarity=0.896  Sum_probs=148.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +.|+++|+.|||||||++++..+.+ ..+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3699999999999999999999999 667788888888888899999999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      |++++++|+.+.. |+..+.... ..++|+++|+||+|+...+.+...++.+++... ++.|+++||++|.||+++|.++
T Consensus        81 Dvtd~~Sf~~l~~-w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120          81 DITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999987 777776654 567999999999999888888888998888875 7899999999999999999999


Q ss_pred             HHHHHcC
Q 028292          172 VLKILDT  178 (211)
Q Consensus       172 ~~~~~~~  178 (211)
                      ++.+...
T Consensus       159 ~~~~~~~  165 (202)
T cd04120         159 VDDILKK  165 (202)
T ss_pred             HHHHHHh
Confidence            9998764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.5e-37  Score=222.99  Aligned_cols=167  Identities=40%  Similarity=0.695  Sum_probs=151.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      .+..+||+++|+.|||||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999888 56667888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      |+|||++++.+|+.+.. |++.+....  .++|++|||||+|+.+.+.+..+++..+++..+++++++||++|.||+++|
T Consensus        83 llVfD~t~~~Sf~~~~~-w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121          83 ILVYDITNRWSFDGIDR-WIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            99999999999999987 777776654  589999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028292          169 EELVLKILDTP  179 (211)
Q Consensus       169 ~~i~~~~~~~~  179 (211)
                      .+|.+.+....
T Consensus       160 ~~l~~~i~~~~  170 (189)
T cd04121         160 TELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHHhc
Confidence            99999887533

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-37  Score=216.47  Aligned_cols=171  Identities=49%  Similarity=0.825  Sum_probs=163.1

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (211)
                      ...+.++.+||+++|+++||||-|+.|+...+| .+..+|.|.++....+.+++..+..+||||+|+++|+.....++++
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence            457788999999999999999999999999999 7888999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +.++++|||++...+|+.+.. |+..++.+. ..++++++|+||+||.+.+.+..+++..++...++.++++||.++.+|
T Consensus        87 AvGAllVYDITr~~Tfenv~r-WL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNV  164 (222)
T KOG0087|consen   87 AVGALLVYDITRRQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNV  164 (222)
T ss_pred             cceeEEEEechhHHHHHHHHH-HHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccH
Confidence            999999999999999998888 999999888 789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      +..|..++..++..
T Consensus       165 e~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  165 EKAFERVLTEIYKI  178 (222)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.6e-37  Score=211.27  Aligned_cols=170  Identities=37%  Similarity=0.696  Sum_probs=156.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...+||+++|++|+|||+|++++.+.+| ..+..+.|.++-.+.+.+++..+.++||||+|+++|.++...+++++|.++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            4669999999999999999999999999 788899999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHhC-CcEEEeccCCCCC
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVDKES--ERVVSKKEGIDFAREYG-CLFLECSAKTRVN  163 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  163 (211)
                      +|||++++.||+.+.. |...+..+...   ..-|+||+|||.|+..  .+.++...+++|+.+.+ ++||++|||...|
T Consensus        87 lvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N  165 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN  165 (210)
T ss_pred             EEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence            9999999999999999 77777666532   3469999999999965  38899999999999876 7999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCc
Q 028292          164 VEQCFEELVLKILDTPSL  181 (211)
Q Consensus       164 v~~~~~~i~~~~~~~~~~  181 (211)
                      |.+.|..+.+.+++....
T Consensus       166 V~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  166 VDEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHHhccch
Confidence            999999999999988765

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.8e-36  Score=222.52  Aligned_cols=169  Identities=46%  Similarity=0.816  Sum_probs=152.6

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      .+.++.+||+++|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++
T Consensus         7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~   86 (216)
T PLN03110          7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV   86 (216)
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence            3456789999999999999999999999888 567788888888888999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++..++++++++||++|.|+++
T Consensus        87 ~~ilv~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~  164 (216)
T PLN03110         87 GALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK  164 (216)
T ss_pred             EEEEEEECCChHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999887 777776654 46899999999999988788888888899988999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028292          167 CFEELVLKILDT  178 (211)
Q Consensus       167 ~~~~i~~~~~~~  178 (211)
                      +|++|+..+.+.
T Consensus       165 lf~~l~~~i~~~  176 (216)
T PLN03110        165 AFQTILLEIYHI  176 (216)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998763

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=4.3e-36  Score=218.09  Aligned_cols=195  Identities=46%  Similarity=0.772  Sum_probs=162.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ++.++|+|+|++|||||||++++.+..+ ..+.++.+.++....+.+.+..+.+.|||+||++.+...+..+++++|++|
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            4579999999999999999999999988 567788888887788888888899999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++++|+.+.. |+..+....  ...|++||+||+|+.+...+..+++..++...+++++++||++|.|++++|+
T Consensus        84 lv~D~~~~~s~~~~~~-~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~  160 (199)
T cd04110          84 VVYDVTNGESFVNVKR-WLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN  160 (199)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence            9999999999999987 666665543  6789999999999987777788888889988899999999999999999999


Q ss_pred             HHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCccc
Q 028292          170 ELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCC  209 (211)
Q Consensus       170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  209 (211)
                      +|...+....................+.+.. .++...||
T Consensus       161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  199 (199)
T cd04110         161 CITELVLRAKKDNLAKQQQQQQNDVVKLPKN-SKRKKRCC  199 (199)
T ss_pred             HHHHHHHHhhhccCcccccCCccccCccchh-ccccccCC
Confidence            9999998776665555444444443333333 23444566

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=4e-36  Score=217.03  Aligned_cols=189  Identities=40%  Similarity=0.749  Sum_probs=158.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +||+|+|++|||||||++++.++.+  ..+.++.+.++....+.+++..+.+.||||||+..+...+..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            5899999999999999999999887  35677777777777788899999999999999999988888899999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++++|+++.. |...+.... ..++|+++|+||+|+...+.+..+++..+...++++++++||++|.|++++|.+|
T Consensus        81 ~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l  158 (191)
T cd04112          81 YDITNKASFDNIRA-WLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV  158 (191)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988 777776654 4579999999999997777777888888988999999999999999999999999


Q ss_pred             HHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCccc
Q 028292          172 VLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCC  209 (211)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  209 (211)
                      .+.+.+.....+...+..     ........++..+||
T Consensus       159 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  191 (191)
T cd04112         159 AKELKHRKYEQPDEGKFK-----ISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHHHhccccCCCCcEE-----eccccCcccccCCCC
Confidence            999998865544333322     223334555566688

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=7.7e-36  Score=219.44  Aligned_cols=171  Identities=26%  Similarity=0.510  Sum_probs=148.8

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      .......+||+++|+.|||||+|++++..+.+ ..+.++.+..+. ..+.+++..+.+.||||+|++.+..+++.+++++
T Consensus         7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a   85 (232)
T cd04174           7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   85 (232)
T ss_pred             CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence            33445789999999999999999999999988 667788876654 4578899999999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-c
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-L  152 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~  152 (211)
                      |++|+|||++++++|+.+...|+..+....  .+.|+++|+||+|+..            .+.+..+++.+++..+++ .
T Consensus        86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~  163 (232)
T cd04174          86 DAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV  163 (232)
T ss_pred             cEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence            999999999999999986544888887654  5789999999999854            367889999999999998 6


Q ss_pred             EEEeccCCCC-CHHHHHHHHHHHHHcCCC
Q 028292          153 FLECSAKTRV-NVEQCFEELVLKILDTPS  180 (211)
Q Consensus       153 ~~~~Sa~~~~-~v~~~~~~i~~~~~~~~~  180 (211)
                      |++|||++|+ ||+++|..++..+.+...
T Consensus       164 ~~EtSAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         164 YLECSAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             EEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            9999999998 899999999999876533

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.6e-37  Score=205.31  Aligned_cols=207  Identities=33%  Similarity=0.611  Sum_probs=173.8

Q ss_pred             CCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 028292            3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY   81 (211)
Q Consensus         3 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (211)
                      ....-......|||+++|..-+|||+|+-|++..+| ...-.+.-..+....+.+++....+.||||+|+++|..+-+.+
T Consensus         3 ~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY   82 (218)
T KOG0088|consen    3 LETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY   82 (218)
T ss_pred             ccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceE
Confidence            334445566889999999999999999999999999 5555566667888888999999999999999999999999999


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      +++++++++|||++|++||+.++. |...++... ...+.+++|+||.|+++.+.+..+++..++..-|+.|+++||+.+
T Consensus        83 YRgSnGalLVyDITDrdSFqKVKn-WV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N  160 (218)
T KOG0088|consen   83 YRGSNGALLVYDITDRDSFQKVKN-WVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN  160 (218)
T ss_pred             EeCCCceEEEEeccchHHHHHHHH-HHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence            999999999999999999999999 777777766 566889999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCcccC--------CCCCcccccccCCCCCCCCCCCcccCC
Q 028292          162 VNVEQCFEELVLKILDTPSLLSE--------GSSGVKKNIFKESPPQNDASTTGCCSS  211 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~cc~~  211 (211)
                      +||.++|..+...+.+......+        +....+.....+..++...+.++||++
T Consensus       161 ~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~~  218 (218)
T KOG0088|consen  161 VGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCCRI  218 (218)
T ss_pred             cCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCccCC
Confidence            99999999999888776533222        222223334455565666667779985

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=3.3e-36  Score=220.27  Aligned_cols=187  Identities=33%  Similarity=0.542  Sum_probs=150.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      +||+++|.+|||||||+++++.+.+..+.++.+.++.....    ..+.+.||||+|++.+..++..+++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            58999999999999999999999986667777766554433    56789999999999999999999999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHhC----
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVVSKKEGIDFAREYG----  150 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----  150 (211)
                      ++++++|+.+..+|..... .. ..++|+++|+||+|+..                   .+.+..+++..++.+.+    
T Consensus        77 vt~~~Sf~~l~~~~~~l~~-~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~  154 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTD-TA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM  154 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHH-hc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence            9999999999886665543 32 46799999999999965                   57888999999999876    


Q ss_pred             ----------CcEEEeccCCCCCHHHHHHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCccc
Q 028292          151 ----------CLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCC  209 (211)
Q Consensus       151 ----------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  209 (211)
                                ++|+++||++|.||+++|..+++.+++............   ..-...+.+++++.+||
T Consensus       155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT---QGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh---hccccCCCcccCCCCCC
Confidence                      689999999999999999999999876433332211111   22233344666777888

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=9.5e-36  Score=211.47  Aligned_cols=160  Identities=31%  Similarity=0.664  Sum_probs=142.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++++|||+|+.++..+.+ ..+.++.+..+ ...+.+++..+.+.||||+|++++..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999 56788887665 455778899999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER----------VVSKKEGIDFAREYGC-LFLECSAKTR  161 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (211)
                      |+++++||+.+...|...+....  .++|++|||||+|+.+.+          .+..+++..++...++ .|+++||++|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            99999999998544777776654  579999999999996543          4788999999999998 6999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028292          162 VNVEQCFEELVLKIL  176 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~  176 (211)
                      .||+++|..+++.+.
T Consensus       159 ~nV~~~F~~~~~~~~  173 (176)
T cd04133         159 QNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999999764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-36  Score=199.70  Aligned_cols=174  Identities=48%  Similarity=0.862  Sum_probs=162.7

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR   83 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (211)
                      ...+..+..+|++++|...+|||+|+.++++..+ ..+..+.|.++..+++.-...++.+++|||+|++.++.+...+++
T Consensus        13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR   92 (193)
T KOG0093|consen   13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR   92 (193)
T ss_pred             cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence            3456678899999999999999999999999999 888999999999998887888899999999999999999999999


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      +++++|++||.++.+||..+.. |...+..+. ..+.|+|+|+||||+.+++.+..+..+.++...|+.||++||+.+.|
T Consensus        93 gamgfiLmyDitNeeSf~svqd-w~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Nin  170 (193)
T KOG0093|consen   93 GAMGFILMYDITNEESFNSVQD-WITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENIN  170 (193)
T ss_pred             ccceEEEEEecCCHHHHHHHHH-HHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccccc
Confidence            9999999999999999999999 888888887 88999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 028292          164 VEQCFEELVLKILDTPS  180 (211)
Q Consensus       164 v~~~~~~i~~~~~~~~~  180 (211)
                      |+.+|..++..+.+...
T Consensus       171 Vk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  171 VKQVFERLVDIICDKMS  187 (193)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999998876543

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1e-35  Score=212.48  Aligned_cols=163  Identities=28%  Similarity=0.567  Sum_probs=144.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...+||+++|+.+||||||++++..+.+ ..+.|+.+..+ ...+.+++..+.+.||||+|++.+..+++.+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            3568999999999999999999999998 66778887655 456788999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cEEEe
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LFLEC  156 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  156 (211)
                      +|||++++.+|+.+...|...+....  .+.|+++|+||+|+.+            .+.+..+++.++++.+++ +|++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            99999999999998555888887765  5799999999999854            346889999999999996 89999


Q ss_pred             ccCCCCC-HHHHHHHHHHHHH
Q 028292          157 SAKTRVN-VEQCFEELVLKIL  176 (211)
Q Consensus       157 Sa~~~~~-v~~~~~~i~~~~~  176 (211)
                      ||++|.| |+++|..+++.+.
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999998754

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=9.1e-36  Score=211.63  Aligned_cols=164  Identities=36%  Similarity=0.612  Sum_probs=145.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|.+|||||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+|||||+..+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            48999999999999999999999998 46667776444 44577888889999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.||+++|.+|
T Consensus        81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999987 66666655435689999999999998778888889999999999999999999999999999999


Q ss_pred             HHHHHcC
Q 028292          172 VLKILDT  178 (211)
Q Consensus       172 ~~~~~~~  178 (211)
                      ++.+.+.
T Consensus       160 ~~~~~~~  166 (172)
T cd04141         160 VREIRRK  166 (172)
T ss_pred             HHHHHHh
Confidence            9988753

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3e-37  Score=202.66  Aligned_cols=166  Identities=52%  Similarity=0.845  Sum_probs=157.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...++.+++|++|+|||+|+.++....| ..|..+.|.++...++.+.+..+.+.|||++|++.|+.+...+++..++++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            4557889999999999999999999998 778889999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||+++.+||.++.. |++.++..+  +.+|-++|+||.|.++.+.+..+++..|+...++.+|++||+..++++.+|.
T Consensus        86 vVYDVTn~ESF~Nv~r-WLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKR-WLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH  162 (198)
T ss_pred             EEEECcchhhhHhHHH-HHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence            9999999999999999 888888776  6899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 028292          170 ELVLKILDTP  179 (211)
Q Consensus       170 ~i~~~~~~~~  179 (211)
                      -|.+++....
T Consensus       163 cit~qvl~~k  172 (198)
T KOG0079|consen  163 CITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHH
Confidence            9999888765

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.3e-35  Score=209.84  Aligned_cols=163  Identities=51%  Similarity=0.859  Sum_probs=146.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999988 55667888888878888899999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++++|+.+.. |+..+.... ..+.|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|.++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l  159 (166)
T cd04122          82 YDITRRSTYNHLSS-WLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET  159 (166)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999988 666665544 4679999999999998888888889999999999999999999999999999999


Q ss_pred             HHHHHc
Q 028292          172 VLKILD  177 (211)
Q Consensus       172 ~~~~~~  177 (211)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd04122         160 AKKIYQ  165 (166)
T ss_pred             HHHHhh
Confidence            988764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=214.15  Aligned_cols=165  Identities=39%  Similarity=0.640  Sum_probs=144.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+||+++|.+|||||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            459999999999999999999999888 56667766555 4567788888999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+...++..++..++++++++||++|.|++++|.+
T Consensus        83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            999999999999988 6666655544568999999999999777777888888888888999999999999999999999


Q ss_pred             HHHHHHcC
Q 028292          171 LVLKILDT  178 (211)
Q Consensus       171 i~~~~~~~  178 (211)
                      |++.+.+.
T Consensus       162 l~~~l~~~  169 (189)
T PTZ00369        162 LVREIRKY  169 (189)
T ss_pred             HHHHHHHH
Confidence            99988753

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=3e-35  Score=216.10  Aligned_cols=165  Identities=35%  Similarity=0.563  Sum_probs=146.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +||+++|++|||||||+++|.+..+ ..+.++.+.++....+.+.+ ..+.+.||||+|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999888 66778888888888888764 578999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ||++++++|+.+.. |...+.....  ..++|+++|+||+|+.+.+.+..++...++..++++++++||++|+|++++|+
T Consensus        81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999987 7777765542  24578999999999987778888889999999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 028292          170 ELVLKILDTP  179 (211)
Q Consensus       170 ~i~~~~~~~~  179 (211)
                      +|.+.+....
T Consensus       160 ~l~~~l~~~~  169 (215)
T cd04109         160 QLAAELLGVD  169 (215)
T ss_pred             HHHHHHHhcc
Confidence            9999998653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.6e-35  Score=210.05  Aligned_cols=161  Identities=27%  Similarity=0.569  Sum_probs=141.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|||||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||+|++.+..+.+.+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999988 56677777655 35678889999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cEEEecc
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LFLECSA  158 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa  158 (211)
                      ||+++++||+++...|...+....  .++|+++|+||+|+.+            .+.+..+++.++++.+++ +|+++||
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  157 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA  157 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence            999999999997545888887765  5799999999999854            245889999999999997 8999999


Q ss_pred             CCCCC-HHHHHHHHHHHHH
Q 028292          159 KTRVN-VEQCFEELVLKIL  176 (211)
Q Consensus       159 ~~~~~-v~~~~~~i~~~~~  176 (211)
                      ++|++ |+++|..+.+...
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.8e-35  Score=213.40  Aligned_cols=165  Identities=39%  Similarity=0.642  Sum_probs=140.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      ||+++|.+|||||||+++|..+.+ ..+.++.+..+ ...+.+++..+.+.||||||++++..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888 44556665443 3456678888899999999999999999999999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ++++++|+.+.. |...+.....  ..++|+++|+||+|+...+.+...++..++..++++++++||++|.|++++|.++
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999888 5555544332  2578999999999998777788888888888899999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028292          172 VLKILDTPSL  181 (211)
Q Consensus       172 ~~~~~~~~~~  181 (211)
                      ++.+.++...
T Consensus       159 ~~~l~~~~~~  168 (190)
T cd04144         159 VRALRQQRQG  168 (190)
T ss_pred             HHHHHHhhcc
Confidence            9988755544

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=5.6e-35  Score=210.66  Aligned_cols=164  Identities=49%  Similarity=0.801  Sum_probs=147.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999998 447888888888888888888999999999999999989999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++|..+.. |+..+..+. ...+|+++|+||+|+.+...+...++..++...+++++++||++|.|++++|.+++
T Consensus        81 d~~~~~s~~~i~~-~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125          81 DVTDQESFENLKF-WINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999988 777776654 45689999999999987777888888888888899999999999999999999999


Q ss_pred             HHHHcCC
Q 028292          173 LKILDTP  179 (211)
Q Consensus       173 ~~~~~~~  179 (211)
                      +.+..+.
T Consensus       159 ~~~~~~~  165 (188)
T cd04125         159 KLIIKRL  165 (188)
T ss_pred             HHHHHHh
Confidence            9998643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=4.2e-35  Score=207.49  Aligned_cols=164  Identities=58%  Similarity=0.968  Sum_probs=148.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+||+++|++|+|||||++++.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            569999999999999999999999998 6678888888887888888888999999999999999889999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|.+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867          82 VYDITDEKSFENIRN-WMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999988 777776654 568999999999999877777888888899999999999999999999999999


Q ss_pred             HHHHHHc
Q 028292          171 LVLKILD  177 (211)
Q Consensus       171 i~~~~~~  177 (211)
                      +.+++..
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.7e-35  Score=210.83  Aligned_cols=163  Identities=29%  Similarity=0.557  Sum_probs=142.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+||+++|+.+||||||++++..+.+ ..+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            358999999999999999999999998 677788875543 456788899999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CcEEEec
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG-CLFLECS  157 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  157 (211)
                      |||++++.+|+.+...|...+....  .++|+++|+||.|+.+.            +.+..+++..++..++ ++++++|
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S  158 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS  158 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence            9999999999999865777776543  57999999999999543            2366778889999988 5999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHc
Q 028292          158 AKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~~~~~  177 (211)
                      |++|+||+++|.++++.+..
T Consensus       159 Ak~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         159 ALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999998864

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=4.5e-35  Score=209.77  Aligned_cols=167  Identities=38%  Similarity=0.744  Sum_probs=147.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG----------GKKMKLAIWDTAGQERFRTLTS   79 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~   79 (211)
                      ++.+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+.          +..+.+.|||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            3679999999999999999999999988 6677888877776666554          4568899999999999999999


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK  159 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (211)
                      .+++++|++|+|||++++++|..+.. |+..+.......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||+
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            99999999999999999999999988 77777665545689999999999998877888888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 028292          160 TRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~  178 (211)
                      +|.|++++|++|.+.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999987643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.1e-34  Score=212.43  Aligned_cols=166  Identities=22%  Similarity=0.524  Sum_probs=144.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+|+|++|||||+|++++..+.+ ..+.|+.+..+. ..+.+++..+.+.||||+|++.+..+++.+++++|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            7999999999999999999999988 567788876554 56788999999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAK  159 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  159 (211)
                      |++++++|+.+...|...+....  .++|+++|+||+|+...            ..+..+++..++...++ +|++|||+
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            99999999999776887766543  68999999999999542            24778899999999996 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHHcCCCcc
Q 028292          160 TRVN-VEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       160 ~~~~-v~~~~~~i~~~~~~~~~~~  182 (211)
                      ++.+ |+++|..+..+...+....
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~~~~  182 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRGHRQ  182 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhccCCc
Confidence            9985 9999999999887755443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.4e-34  Score=211.67  Aligned_cols=166  Identities=43%  Similarity=0.758  Sum_probs=146.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+||+|+|++|||||||++++++..+ ..+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999888 456678887777777766 4667899999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++|+.+.. |+..+........+|+++|+||+|+...+.+..+++.++++.++++++++||++|.|++++|++
T Consensus        82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999988 6666655543456889999999999887788888899999999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 028292          171 LVLKILDTP  179 (211)
Q Consensus       171 i~~~~~~~~  179 (211)
                      |.+.+.+..
T Consensus       161 l~~~~~~~~  169 (211)
T cd04111         161 LTQEIYERI  169 (211)
T ss_pred             HHHHHHHHh
Confidence            999887663

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.2e-34  Score=204.00  Aligned_cols=159  Identities=46%  Similarity=0.845  Sum_probs=143.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999988 566788888887788888888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++|+.+.. |+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||++|.|++++|.+|.
T Consensus        81 d~~~~~sf~~~~~-~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117          81 DISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999987 777766554 45799999999999988888888999999999999999999999999999999998


Q ss_pred             HH
Q 028292          173 LK  174 (211)
Q Consensus       173 ~~  174 (211)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            64

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2.2e-34  Score=203.39  Aligned_cols=162  Identities=49%  Similarity=0.871  Sum_probs=144.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||++++.+..+ ..+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998 567788887777777777888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++|+.+.. |...+.... ..++|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+++.
T Consensus        82 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865          82 DITNEESFNAVQD-WSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999987 777776554 45789999999999987777778888888888899999999999999999999999


Q ss_pred             HHHHc
Q 028292          173 LKILD  177 (211)
Q Consensus       173 ~~~~~  177 (211)
                      ..+.+
T Consensus       160 ~~~~~  164 (165)
T cd01865         160 DIICD  164 (165)
T ss_pred             HHHHh
Confidence            87654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.5e-34  Score=205.81  Aligned_cols=160  Identities=30%  Similarity=0.576  Sum_probs=139.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|||||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.||||+|++.+...+..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            47999999999999999999999998 677788876554 4567788889999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CcEEEecc
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG-CLFLECSA  158 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  158 (211)
                      ||++++++|+.+...|...+....  .++|+++|+||+|+.+.            +.+..+++.++++..+ +.|+++||
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  157 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA  157 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence            999999999999866877776543  57999999999998543            4577788888988887 68999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028292          159 KTRVNVEQCFEELVLKI  175 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~~  175 (211)
                      ++|.|++++|+.++..+
T Consensus       158 ~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         158 LTQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.9e-34  Score=204.07  Aligned_cols=163  Identities=32%  Similarity=0.630  Sum_probs=145.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||++++++..+ ..+.++.+.++....+.+.+..+.+++|||||++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988 677788888888888888899999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTN----QDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      |++++.+|+.+.. |...+......    .+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|
T Consensus        81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999998877 77777665532    579999999999997666778888888888889999999999999999999


Q ss_pred             HHHHHHHHc
Q 028292          169 EELVLKILD  177 (211)
Q Consensus       169 ~~i~~~~~~  177 (211)
                      ++|++.+.+
T Consensus       160 ~~l~~~l~~  168 (168)
T cd04119         160 QTLFSSIVD  168 (168)
T ss_pred             HHHHHHHhC
Confidence            999988753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2.8e-34  Score=203.12  Aligned_cols=163  Identities=60%  Similarity=0.951  Sum_probs=146.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999888 55667777778878888888889999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++++|..+.. |+..+.... ..+.|+++|+||+|+.....+..+++..++..++++++++||++|+|++++|.+|
T Consensus        82 ~d~~~~~s~~~l~~-~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869          82 YDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence            99999999999988 777776554 4679999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHc
Q 028292          172 VLKILD  177 (211)
Q Consensus       172 ~~~~~~  177 (211)
                      .+.+..
T Consensus       160 ~~~~~~  165 (166)
T cd01869         160 AREIKK  165 (166)
T ss_pred             HHHHHh
Confidence            998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=6.4e-34  Score=205.98  Aligned_cols=163  Identities=33%  Similarity=0.593  Sum_probs=142.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +||+|+|++|||||||+++++++.+.  .+.++.+..+....+.+++..+.+.+||++|++++..++..++.++|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            48999999999999999999999883  4778888888788888999999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE----RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      ||++++.+|+.+.. |+..+...  ..++|+++|+||+|+...    ..+...++..++..++++++++||+++.|++++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118          81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL  157 (193)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999998877 77766554  357999999999998532    345566777888888899999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028292          168 FEELVLKILDTP  179 (211)
Q Consensus       168 ~~~i~~~~~~~~  179 (211)
                      |++|.+.+.+..
T Consensus       158 ~~~i~~~~~~~~  169 (193)
T cd04118         158 FQKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHHhc
Confidence            999999997644

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=5.7e-34  Score=208.44  Aligned_cols=167  Identities=49%  Similarity=0.825  Sum_probs=148.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.+||+|+|++|+|||||++++++..+ ..+.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            4679999999999999999999999887 556778888888888888898899999999999999888999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++.+|+.+.. |+..+.... ....|+++|+||+|+.+.+.+..++..++++.++++++++||+++.|++++|.
T Consensus        84 lv~D~~~~~s~~~l~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~  161 (210)
T PLN03108         84 LVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (210)
T ss_pred             EEEECCcHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999877 665555443 46799999999999988778888899999999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 028292          170 ELVLKILDTP  179 (211)
Q Consensus       170 ~i~~~~~~~~  179 (211)
                      ++++.+++..
T Consensus       162 ~l~~~~~~~~  171 (210)
T PLN03108        162 KTAAKIYKKI  171 (210)
T ss_pred             HHHHHHHHHh
Confidence            9999988643

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.4e-34  Score=202.72  Aligned_cols=160  Identities=40%  Similarity=0.720  Sum_probs=138.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||++++..+.+ ..+.++.+ +.....+.+++..+.+.||||||++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999887 44555555 444566778888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..++...+...++++++++||++|.|++++|.++.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999888 666665554456899999999999977777777778888888889999999999999999999998


Q ss_pred             HHH
Q 028292          173 LKI  175 (211)
Q Consensus       173 ~~~  175 (211)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=196.29  Aligned_cols=171  Identities=44%  Similarity=0.774  Sum_probs=152.7

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +...+.++++|+|++-+|||+|++.++.+++ ....|+.|.++....+.+ .+..+.+++|||+|+++++++...+++++
T Consensus         3 pif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns   82 (213)
T KOG0091|consen    3 PIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS   82 (213)
T ss_pred             cceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence            3456889999999999999999999999999 667889998888777766 56678999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      -++++|||.++.+||+++.. |......+.. ...+-+.+|++|+|+...+++..++++.++..+++.|+++||++|.||
T Consensus        83 vgvllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NV  161 (213)
T KOG0091|consen   83 VGVLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNV  161 (213)
T ss_pred             cceEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcH
Confidence            99999999999999999999 7776666654 344556788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028292          165 EQCFEELVLKILDTP  179 (211)
Q Consensus       165 ~~~~~~i~~~~~~~~  179 (211)
                      ++.|+.|.+.++...
T Consensus       162 eEAF~mlaqeIf~~i  176 (213)
T KOG0091|consen  162 EEAFDMLAQEIFQAI  176 (213)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887643

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=3.7e-34  Score=204.88  Aligned_cols=166  Identities=27%  Similarity=0.561  Sum_probs=142.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|+.|||||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999988 568889998888888889999999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-----CcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-----ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      |++++++|+++.. |+..+.... ....| ++|+||+|+..     ......+++.+++...+++++++||++|.|++++
T Consensus        81 D~t~~~s~~~i~~-~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          81 DLTRKSTLNSIKE-WYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999987 777666554 34566 67899999842     1122346677888888999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 028292          168 FEELVLKILDTPSLL  182 (211)
Q Consensus       168 ~~~i~~~~~~~~~~~  182 (211)
                      |.++.+.+.+.+...
T Consensus       158 f~~l~~~l~~~~~~~  172 (182)
T cd04128         158 FKIVLAKAFDLPLTI  172 (182)
T ss_pred             HHHHHHHHHhcCCCh
Confidence            999999998755444

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=4.2e-34  Score=210.19  Aligned_cols=168  Identities=35%  Similarity=0.538  Sum_probs=146.2

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +......+||+++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++
T Consensus         7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   86 (219)
T PLN03071          7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (219)
T ss_pred             CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence            44447889999999999999999999999988 67888999888888888888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|+|||++++.+|+.+.. |+..+....  .++|+++|+||+|+.. +.+..+++ .+....++.|+++||++|.|++
T Consensus        87 ~~~ilvfD~~~~~s~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~  161 (219)
T PLN03071         87 QCAIIMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE  161 (219)
T ss_pred             cEEEEEEeCCCHHHHHHHHH-HHHHHHHhC--CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHH
Confidence            99999999999999999987 777776554  5799999999999853 33444444 6777888999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028292          166 QCFEELVLKILDTP  179 (211)
Q Consensus       166 ~~~~~i~~~~~~~~  179 (211)
                      ++|.||.+.+.+..
T Consensus       162 ~~f~~l~~~~~~~~  175 (219)
T PLN03071        162 KPFLYLARKLAGDP  175 (219)
T ss_pred             HHHHHHHHHHHcCc
Confidence            99999999997653

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-35  Score=192.92  Aligned_cols=170  Identities=47%  Similarity=0.801  Sum_probs=159.4

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      .+..++.+|++++|+.|+|||.|++++...++ +...++.|.++....+.+.+..+.++||||+|+++|+...+.+++++
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            35567889999999999999999999999999 88889999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      .+.++|||++++++|+.+.. |+...+... ..++.+++++||.|+.+.+++...++.+|+++..+.+.++|+++|+||+
T Consensus        83 AGAlLVYD~TsrdsfnaLtn-WL~DaR~lA-s~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE  160 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTN-WLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE  160 (214)
T ss_pred             cceEEEEeccchhhHHHHHH-HHHHHHhhC-CCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence            99999999999999999998 888888777 7889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      +.|-...+.+..+
T Consensus       161 EaFl~c~~tIl~k  173 (214)
T KOG0086|consen  161 EAFLKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998887777643

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=6.7e-34  Score=204.91  Aligned_cols=166  Identities=32%  Similarity=0.577  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +||+|+|++|||||||++++.++.+ ..+.++.+..+.. .+... +..+.+.+|||||++.+...+..++.++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999988 5566666655543 34444 6778999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHhCC-cEEEeccCCCCCHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE----RVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQ  166 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  166 (211)
                      ||++++++|+.+...|+..+....  .++|+++|+||+|+...    +.+...++.+++..+++ +++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  157 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE  157 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence            999999999998766777665443  57999999999998543    35677888899999988 999999999999999


Q ss_pred             HHHHHHHHHHcCCCcc
Q 028292          167 CFEELVLKILDTPSLL  182 (211)
Q Consensus       167 ~~~~i~~~~~~~~~~~  182 (211)
                      +|..+++.+.......
T Consensus       158 ~f~~l~~~~~~~~~~~  173 (187)
T cd04132         158 VFDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHHhhhhhh
Confidence            9999999998665544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=8.7e-34  Score=200.36  Aligned_cols=162  Identities=48%  Similarity=0.828  Sum_probs=145.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+||+++|.+|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+..++..++++++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            468999999999999999999999988 5677888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++.+|+.+.. |+..+.... ..++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  159 (165)
T cd01868          82 VYDITKKQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ  159 (165)
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999887 777776655 457999999999999877777888888888888899999999999999999999


Q ss_pred             HHHHH
Q 028292          171 LVLKI  175 (211)
Q Consensus       171 i~~~~  175 (211)
                      |+..+
T Consensus       160 l~~~i  164 (165)
T cd01868         160 LLTEI  164 (165)
T ss_pred             HHHHh
Confidence            99875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=8.2e-34  Score=200.30  Aligned_cols=162  Identities=41%  Similarity=0.716  Sum_probs=139.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|.+|||||||+++++.+.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998887 45566666544 45677788889999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++.+|+.+.. |...+.......+.|+++|+||+|+.+...+...+...+++.++++++++||++|.|++++|.++
T Consensus        80 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  158 (164)
T cd04175          80 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL  158 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 55555444435789999999999998777777777888888889999999999999999999999


Q ss_pred             HHHHH
Q 028292          172 VLKIL  176 (211)
Q Consensus       172 ~~~~~  176 (211)
                      .+.+.
T Consensus       159 ~~~l~  163 (164)
T cd04175         159 VRQIN  163 (164)
T ss_pred             HHHhh
Confidence            98764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=7.1e-34  Score=200.20  Aligned_cols=160  Identities=46%  Similarity=0.789  Sum_probs=149.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      ||+++|+++||||||+++|.++.+ ..+.++.+.+.....+.+++..+.+.+||++|++.+..+...++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999998 6677888889999999999999999999999999999888899999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                      +++++||+.+.. |+..+.... ..++|++||+||.|+.+.+.+..+++..++..++++|+++||+++.|+.++|..+++
T Consensus        81 ~~~~~S~~~~~~-~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~  158 (162)
T PF00071_consen   81 VTDEESFENLKK-WLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR  158 (162)
T ss_dssp             TTBHHHHHTHHH-HHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred             cccccccccccc-ccccccccc-cccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999996 888888777 357999999999999888899999999999999999999999999999999999999


Q ss_pred             HHH
Q 028292          174 KIL  176 (211)
Q Consensus       174 ~~~  176 (211)
                      .+.
T Consensus       159 ~i~  161 (162)
T PF00071_consen  159 KIL  161 (162)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.6e-33  Score=199.59  Aligned_cols=165  Identities=51%  Similarity=0.854  Sum_probs=147.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...+||+|+|.+|||||||++++.+..+ ..+.++.+.++....+.+.+....+.+||+||++++..+...+++++|++|
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            3568999999999999999999999887 555677788888888888888899999999999999888889999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++.+|+.+.. |+..+.... ..++|+++|+||.|+.....+..+++..++...++.++++||+++.|++++|.
T Consensus        82 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~  159 (168)
T cd01866          82 LVYDITRRETFNHLTS-WLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI  159 (168)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999887 777666554 47899999999999987777888888889999999999999999999999999


Q ss_pred             HHHHHHHc
Q 028292          170 ELVLKILD  177 (211)
Q Consensus       170 ~i~~~~~~  177 (211)
                      ++.+.+++
T Consensus       160 ~~~~~~~~  167 (168)
T cd01866         160 NTAKEIYE  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998865

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.5e-33  Score=199.18  Aligned_cols=161  Identities=48%  Similarity=0.820  Sum_probs=142.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            568999999999999999999999887 5566777777777888888888899999999999999889999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~  169 (211)
                      |||++++++|+.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..+++..+. .++++||++|.|+++++.
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864          82 AYDITRRSSFESVPH-WIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence            999999999999887 777666544 56899999999999987777888888889888886 789999999999999999


Q ss_pred             HHHHH
Q 028292          170 ELVLK  174 (211)
Q Consensus       170 ~i~~~  174 (211)
                      ++.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=2.2e-33  Score=198.98  Aligned_cols=163  Identities=33%  Similarity=0.589  Sum_probs=141.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      ||+++|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+++|||||++.+..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999988 6788899988888888889989999999999999999999999999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ++++++|+.+.. |+..+........+|+++|+||+|+.+...  ...+++..++..++.+++++||++|.|++++|..|
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l  160 (170)
T cd04108          82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV  160 (170)
T ss_pred             CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999887 666654433234678999999999865433  34566777888888999999999999999999999


Q ss_pred             HHHHHcC
Q 028292          172 VLKILDT  178 (211)
Q Consensus       172 ~~~~~~~  178 (211)
                      .+.+.+.
T Consensus       161 ~~~~~~~  167 (170)
T cd04108         161 AALTFEL  167 (170)
T ss_pred             HHHHHHc
Confidence            9988653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.8e-33  Score=198.55  Aligned_cols=161  Identities=43%  Similarity=0.731  Sum_probs=138.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+|+|++|||||||++++.+..+ ..+.++.+ +.......+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888 44444444 344566677888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|+
T Consensus        80 d~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173       80 SITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence            9999999999988 555554444356899999999999987777788888888888899999999999999999999999


Q ss_pred             HHHH
Q 028292          173 LKIL  176 (211)
Q Consensus       173 ~~~~  176 (211)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T smart00173      159 REIR  162 (164)
T ss_pred             HHHh
Confidence            8765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=3.6e-33  Score=201.24  Aligned_cols=161  Identities=32%  Similarity=0.534  Sum_probs=137.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      .||+++|++|||||||++++.++.+ ..+.++.+..+. ..+.+++..+.+.|||++|++.+..++..++.++|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3899999999999999999999988 456677665543 45667888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhC-CcEEEeccC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREYG-CLFLECSAK  159 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (211)
                      |++++++|+.+...|+..+....  .+.|+++|+||+|+.+.+            .+..+++..++...+ +.|+++||+
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  157 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK  157 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence            99999999998765777776544  579999999999996543            345667778887777 689999999


Q ss_pred             CCCCHHHHHHHHHHHHHc
Q 028292          160 TRVNVEQCFEELVLKILD  177 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~  177 (211)
                      +|.|++++|.+|.+.+..
T Consensus       158 ~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         158 LNRGVNEAFTEAARVALN  175 (189)
T ss_pred             cCCCHHHHHHHHHHHHhc
Confidence            999999999999999873

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=2.1e-33  Score=199.80  Aligned_cols=158  Identities=30%  Similarity=0.568  Sum_probs=137.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||+.+++.+.+ ..+.++.+. .....+.+++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999888 566677653 33456678888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAK  159 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  159 (211)
                      |++++++|+.+...|...+....  .++|+++|+||+|+.+.            +.+..+++..++..++. +++++||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            99999999999765777776543  57999999999999542            34778889999999985 99999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028292          160 TRVNVEQCFEELVLK  174 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~  174 (211)
                      +|.|++++|+.+.+.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.7e-33  Score=198.06  Aligned_cols=159  Identities=48%  Similarity=0.793  Sum_probs=143.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+|+|++|||||||+++|.++.+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988 667778888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++|..+.. |+..+.... ..++|+++|+||+|+.+...+..+++..++...++.++++||+++.|++++|.++.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113          81 DITNRTSFEALPT-WLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999887 666665554 57899999999999988778888899999999999999999999999999999998


Q ss_pred             HH
Q 028292          173 LK  174 (211)
Q Consensus       173 ~~  174 (211)
                      +.
T Consensus       159 ~~  160 (161)
T cd04113         159 RS  160 (161)
T ss_pred             Hh
Confidence            75

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.2e-33  Score=197.88  Aligned_cols=161  Identities=40%  Similarity=0.652  Sum_probs=138.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|.+|+|||||++++..+.+ ..+.++.+ ++....+.+++..+.+.|||+||++.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999988 44445543 55566777888888999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++.+|+++.. |...+.......++|+++|+||+|+.....+...+...++..++++++++||+++.|++++|.++
T Consensus        80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04176          80 YSLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI  158 (163)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999988 55555544435789999999999997766777777788888888999999999999999999999


Q ss_pred             HHHH
Q 028292          172 VLKI  175 (211)
Q Consensus       172 ~~~~  175 (211)
                      .+.+
T Consensus       159 ~~~l  162 (163)
T cd04176         159 VRQM  162 (163)
T ss_pred             HHhc
Confidence            8754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-34  Score=188.71  Aligned_cols=168  Identities=45%  Similarity=0.836  Sum_probs=157.5

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +....+||+++|..|+|||.|+++++.+-| +....+.|.++..+++.++++.+.++||||+|+++++++...+++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            445779999999999999999999999999 7788899999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +|+|||++..++|+-+.+ |+..+.++. +..+.-|+|+||.|+.+.+++..+...+|+.....-|+++||+..++|+.+
T Consensus        83 lilvydiscqpsfdclpe-wlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPE-WLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             EEEEEecccCcchhhhHH-HHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            999999999999999999 999999999 777888999999999999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |..+.-.+...
T Consensus       161 f~~~a~rli~~  171 (213)
T KOG0095|consen  161 FLDLACRLISE  171 (213)
T ss_pred             HHHHHHHHHHH
Confidence            99998877654

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3.4e-33  Score=198.24  Aligned_cols=163  Identities=39%  Similarity=0.677  Sum_probs=145.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRGAQGII   89 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i   89 (211)
                      +.+||+++|++|||||||+++++.+.+ ..+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            358999999999999999999999888 5677788888888888889999999999999998886 57888899999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC---CCCHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT---RVNVEQ  166 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~  166 (211)
                      +|||++++++|..+.. |...+.......++|+++|+||+|+...+.+..+++.+++...+++++++||++   +.++++
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~  159 (170)
T cd04115          81 FVYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEA  159 (170)
T ss_pred             EEEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHH
Confidence            9999999999999987 887777665467899999999999988888888888899999899999999999   899999


Q ss_pred             HHHHHHHHH
Q 028292          167 CFEELVLKI  175 (211)
Q Consensus       167 ~~~~i~~~~  175 (211)
                      +|.++++.+
T Consensus       160 ~f~~l~~~~  168 (170)
T cd04115         160 IFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHh
Confidence            999998766

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.6e-33  Score=196.72  Aligned_cols=161  Identities=36%  Similarity=0.616  Sum_probs=138.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998887 567788888887777777888899999999999999888889999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++|+.+.. |...+....  .++|+++|+||+|+.. ..+. .+..++....++.++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~--~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  155 (166)
T cd00877          81 DVTSRVTYKNVPN-WHRDLVRVC--GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA  155 (166)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC--CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence            9999999999887 777777665  3899999999999863 2333 344567777788999999999999999999999


Q ss_pred             HHHHcCC
Q 028292          173 LKILDTP  179 (211)
Q Consensus       173 ~~~~~~~  179 (211)
                      +.+.+..
T Consensus       156 ~~~~~~~  162 (166)
T cd00877         156 RKLLGNP  162 (166)
T ss_pred             HHHHhcc
Confidence            9987643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=3.3e-33  Score=196.77  Aligned_cols=158  Identities=34%  Similarity=0.633  Sum_probs=140.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+.  +..+.+.+||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999888 5667888887777777776  778899999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++|+.+.. |+..+....  .++|+++|+||+|+.....+..+++..++...+++++++||+++.|+++++.+
T Consensus        81 v~d~~~~~s~~~l~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (162)
T cd04106          81 VFSTTDRESFEAIES-WKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY  157 (162)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999998887 776665443  68999999999999877778888888999999999999999999999999999


Q ss_pred             HHHH
Q 028292          171 LVLK  174 (211)
Q Consensus       171 i~~~  174 (211)
                      |...
T Consensus       158 l~~~  161 (162)
T cd04106         158 LAEK  161 (162)
T ss_pred             HHHh
Confidence            9754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=6.4e-33  Score=195.67  Aligned_cols=161  Identities=37%  Similarity=0.621  Sum_probs=137.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|+|||||++++++..+ ..+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999998877 4555555533 344566788889999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++.+|+.+.. |...+.......++|+++|+||+|+.....+..++..+++...+++++++||++|.|++++|++|
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999988 55555544435689999999999997777777778888888888999999999999999999999


Q ss_pred             HHHH
Q 028292          172 VLKI  175 (211)
Q Consensus       172 ~~~~  175 (211)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=7.5e-33  Score=195.25  Aligned_cols=162  Identities=57%  Similarity=0.942  Sum_probs=145.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|+|||||++++.+..+ ....++.+.++....+.+.+..+.+.+||+||+..+...+..+++++|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999887 566678888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++.+++.+.. |+..+..+. ..++|+++|+||+|+.....+..+.+..+....+++++++|++++.|+++++++|.
T Consensus        81 d~~~~~s~~~~~~-~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175       81 DITNRESFENLKN-WLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 777776665 46899999999999877677788888888888899999999999999999999999


Q ss_pred             HHHHc
Q 028292          173 LKILD  177 (211)
Q Consensus       173 ~~~~~  177 (211)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00175      159 REILK  163 (164)
T ss_pred             HHHhh
Confidence            98865

Rab GTPases are implicated in vesicle trafficking.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=8e-33  Score=195.44  Aligned_cols=159  Identities=33%  Similarity=0.513  Sum_probs=135.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||+++++++.+ ..+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988 45556555433 445566778889999999999999988888999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |++++++|+.+.. |...+.....  ..++|+++|+||+|+.+.+.+...++..++..+++.++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            9999999999888 5555544321  267999999999999776778888888888888999999999999999999999


Q ss_pred             HHHH
Q 028292          171 LVLK  174 (211)
Q Consensus       171 i~~~  174 (211)
                      |++.
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            9864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=9.3e-33  Score=194.29  Aligned_cols=160  Identities=37%  Similarity=0.660  Sum_probs=136.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|||||||+++++++.+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999887 55556665443 45567788888899999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||+++..+|+.+.. |...+.......++|+++|+||+|+.+ +.+...++..++...+++++++||++|.|++++|.++
T Consensus        80 ~~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  157 (162)
T cd04138          80 FAINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL  157 (162)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999887 555555554456899999999999865 4566777888888889999999999999999999999


Q ss_pred             HHHH
Q 028292          172 VLKI  175 (211)
Q Consensus       172 ~~~~  175 (211)
                      ++.+
T Consensus       158 ~~~~  161 (162)
T cd04138         158 VREI  161 (162)
T ss_pred             HHHh
Confidence            8754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.1e-32  Score=194.03  Aligned_cols=160  Identities=33%  Similarity=0.561  Sum_probs=136.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||++++.++.+ ..+.++.+.++......+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888 455566676777777788888999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++.+|+.+.. |+..+....  .++|+++|+||+|+...   ...+...++...+++++++||++|.|++++|+.+.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~--~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (161)
T cd04124          81 DVTRKITYKNLSK-WYEELREYR--PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI  154 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC--CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999998877 777665543  57999999999998432   13445566677789999999999999999999999


Q ss_pred             HHHHcCC
Q 028292          173 LKILDTP  179 (211)
Q Consensus       173 ~~~~~~~  179 (211)
                      +.+.+++
T Consensus       155 ~~~~~~~  161 (161)
T cd04124         155 KLAVSYK  161 (161)
T ss_pred             HHHHhcC
Confidence            9887653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=9.8e-33  Score=196.61  Aligned_cols=159  Identities=33%  Similarity=0.625  Sum_probs=136.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      |+|+|++|||||||++++.++.+ ..+.++.+.. ....+.+++..+.+.+|||||++.+..++..++.++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999988 4455555443 445667788889999999999999999999999999999999999


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAKTR  161 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (211)
                      +++++|+.+...|...+....  .++|+++|+||+|+...            ..+..+++.+++...++ .++++||++|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  157 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ  157 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            999999998766888776654  58999999999998553            23777888889999986 9999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028292          162 VNVEQCFEELVLKILD  177 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~  177 (211)
                      .|++++|+.+++.+.+
T Consensus       158 ~~v~~lf~~l~~~~~~  173 (174)
T smart00174      158 EGVREVFEEAIRAALN  173 (174)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.2e-32  Score=195.41  Aligned_cols=162  Identities=41%  Similarity=0.709  Sum_probs=140.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      +..+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+.|||+||++.+..++..+++++|++|
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            3679999999999999999999999888 456678887777778888999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVE  165 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  165 (211)
                      +|||++++++|+.+.. |...+.....   ..++|+++|+||+|+. .+.+..+++.+++..++. +++++||++|.|+.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            9999999999999877 5555543331   3578999999999985 556778888899988884 89999999999999


Q ss_pred             HHHHHHHHH
Q 028292          166 QCFEELVLK  174 (211)
Q Consensus       166 ~~~~~i~~~  174 (211)
                      ++|.++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-35  Score=195.86  Aligned_cols=174  Identities=37%  Similarity=0.712  Sum_probs=159.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG---------GKKMKLAIWDTAGQERFRTL   77 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~   77 (211)
                      -+.++.|+.+.+|++|+|||+++.+++.++| .....++|.++..+.+.+.         +..+.+++|||+|+++++++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            3456778999999999999999999999999 7788899999998888773         44588999999999999999


Q ss_pred             ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus        78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ...+++.+.+++++||+++..||.++.. |+..++.+.-..++-+++++||+|+++.+.++.+++.+++..+++|||++|
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence            9999999999999999999999999999 888888888788899999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292          158 AKTRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      |-+|.||++.++-++..++++.+.-
T Consensus       163 A~tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998765443

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.8e-32  Score=197.82  Aligned_cols=158  Identities=23%  Similarity=0.416  Sum_probs=129.4

Q ss_pred             eEEEEEEcCCCCcHHHHHH-HHhhCCC------CCCCCccee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 028292           13 LFKLLLIGDSGVGKSTLLL-SFTSDTF------EELSPTIGV-DFKIKH--------VALGGKKMKLAIWDTAGQERFRT   76 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~-~l~~~~~------~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   76 (211)
                      .+||+++|+.|||||+|+. ++.+..+      ..+.|+.+. +.....        ..+++..+.+.||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4899999999999999995 6655432      345677652 222221        25688899999999999875  3


Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------Cccc
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVV  137 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~  137 (211)
                      ....+++++|++|+|||++++.||+.+...|...+....  .++|+++|+||+|+.+                   .+.+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            456688999999999999999999999765877776654  5789999999999864                   4678


Q ss_pred             CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 028292          138 SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      ..+++..+++.++++|++|||++|.||+++|..++++
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8999999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.3e-32  Score=191.83  Aligned_cols=161  Identities=47%  Similarity=0.777  Sum_probs=144.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+|+|++|||||||++++.+..+ ..+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998 44788888888888888999999999999999998988888899999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      +|++++++|+.... |+..+.... ..++|+++++||+|+.+......++...++...++.++++||++|.|+++++++|
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860          81 YDITSEESFEKAKS-WVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             EECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999887 666666554 4789999999999997777778888888999989999999999999999999999


Q ss_pred             HHHH
Q 028292          172 VLKI  175 (211)
Q Consensus       172 ~~~~  175 (211)
                      ++.+
T Consensus       159 ~~~l  162 (163)
T cd01860         159 AKKL  162 (163)
T ss_pred             HHHh
Confidence            9875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.5e-32  Score=196.92  Aligned_cols=167  Identities=26%  Similarity=0.414  Sum_probs=134.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYRG   84 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~   84 (211)
                      +||+|+|.+|||||||++++.++.+ ..+.|+.+.++....+.+++..+.+++|||||...+...        ....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988 556777776666667778888899999999996544211        2234789


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCcEEEeccCCC
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-EYGCLFLECSAKTR  161 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  161 (211)
                      +|++|+|||++++++|+.+.. |+..+....  ...++|+++|+||+|+...+.+..++...++. .++++|+++||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999887 555554432  24679999999999997766666666666654 56899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCc
Q 028292          162 VNVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~~~~  181 (211)
                      .|++++|+.++..++.+...
T Consensus       160 ~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         160 WHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCHHHHHHHHHHHhhccCCC
Confidence            99999999999988865443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.3e-32  Score=191.48  Aligned_cols=159  Identities=41%  Similarity=0.703  Sum_probs=140.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||++++++..+ ..+.++.+.++....+.+++..+.+.+||+||+..+..++..+++++|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988 566778888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++|+.+.. |+..+.... ..+.|+++++||+|+........++...+....+++++++||+++.|+++++.+|.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861          81 DITNRQSFDNTDK-WIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999887 565554433 34799999999999977777788888888888899999999999999999999998


Q ss_pred             HH
Q 028292          173 LK  174 (211)
Q Consensus       173 ~~  174 (211)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            75

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.4e-32  Score=196.70  Aligned_cols=155  Identities=32%  Similarity=0.558  Sum_probs=137.6

Q ss_pred             EcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh
Q 028292           19 IGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR   97 (211)
Q Consensus        19 ~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~   97 (211)
                      +|+.|||||||+++++.+.+ ..+.++.|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888 56788999888888888899999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292           98 DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      .+|+.+.. |+..+....  .++|+++|+||+|+.. +.+..+. ..++...++.|+++||++|.||+++|.+|++.+.+
T Consensus        81 ~S~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176       81 VTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             HHHHHHHH-HHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999987 888777654  5899999999999854 3344443 46778888999999999999999999999999976


Q ss_pred             C
Q 028292          178 T  178 (211)
Q Consensus       178 ~  178 (211)
                      .
T Consensus       156 ~  156 (200)
T smart00176      156 D  156 (200)
T ss_pred             c
Confidence            5

Ran is involved in the active transport of proteins through nuclear pores.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=6.1e-32  Score=190.16  Aligned_cols=159  Identities=70%  Similarity=1.102  Sum_probs=142.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888 457788888888777888888899999999999999888889999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |.+++.+|+.+.. |.+.+..+....++|+++|+||+|+. ......++..+++...+++++++||++|.|+++++++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999888 88878777667889999999999986 344566788888888899999999999999999999998


Q ss_pred             HH
Q 028292          173 LK  174 (211)
Q Consensus       173 ~~  174 (211)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            75

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.2e-31  Score=190.62  Aligned_cols=165  Identities=39%  Similarity=0.714  Sum_probs=141.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+|+|++|||||||++++.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999887 555667777777778888888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~  168 (211)
                      |++++++++.... |...+.....   ..++|+++|+||+|+..+..+..++...+....+ ++++++|+++|.|+++++
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            9999999988876 5555443332   3479999999999997666677788888888887 799999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028292          169 EELVLKILDTP  179 (211)
Q Consensus       169 ~~i~~~~~~~~  179 (211)
                      +++.+.+.+..
T Consensus       160 ~~i~~~~~~~~  170 (172)
T cd01862         160 ETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHhcc
Confidence            99999988763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.1e-31  Score=191.03  Aligned_cols=157  Identities=32%  Similarity=0.581  Sum_probs=134.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|+|||||++++.++.+ ..+.++. .+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999999888 4444443 4555567788888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cEEEeccC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LFLECSAK  159 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  159 (211)
                      |++++.+|+.+...|...+...  ..++|+++|+||+|+..            .+.+..+++..++...+. .++++||+
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~  157 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL  157 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence            9999999999876577766643  35799999999999853            456778889999999887 99999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028292          160 TRVNVEQCFEELVL  173 (211)
Q Consensus       160 ~~~~v~~~~~~i~~  173 (211)
                      +|.|++++|+.++-
T Consensus       158 ~~~~v~~lf~~~~~  171 (173)
T cd04130         158 TQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=1.2e-31  Score=190.92  Aligned_cols=159  Identities=34%  Similarity=0.640  Sum_probs=136.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|+|||||++++..+.+ ..+.++.+ +.....+.+++..+.+.+||+||+..+...+..+++.+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988 44555544 334446778888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAK  159 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  159 (211)
                      |++++.+|+.+...|...+...  ..++|+++|+||+|+.+.            ..+..+++..+++..++ +++++||+
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  157 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL  157 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence            9999999999987688777654  478999999999998543            35667888888888886 79999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028292          160 TRVNVEQCFEELVLKI  175 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~  175 (211)
                      +|.|++++|+.+++.+
T Consensus       158 ~~~gi~~~f~~~~~~~  173 (174)
T cd04135         158 TQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            9999999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=7.4e-32  Score=188.80  Aligned_cols=154  Identities=23%  Similarity=0.412  Sum_probs=127.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      +||+++|+.|||||||++++..+.+....++.+..+ ...+.+++..+.+.+||++|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            589999999999999999999988843333333333 46678888889999999999864     235678999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      ++++.+|+.+.. |+..+.......++|+++|+||+|+.  ..+.+..+++.++++.. ++.|++|||++|.||+++|..
T Consensus        75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            999999999987 66777665544679999999999984  46778888888888876 489999999999999999999


Q ss_pred             HHHH
Q 028292          171 LVLK  174 (211)
Q Consensus       171 i~~~  174 (211)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.4e-31  Score=189.65  Aligned_cols=161  Identities=35%  Similarity=0.657  Sum_probs=139.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|.+|||||||++++.++.+ ..+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            7899999999999999999999888 5556666543 3566677888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      |++++++++.+.. |...+.......++|+++++||.|+...+.+..++...+.+.++ ++++++||+++.|++++|.++
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999987 66666554435689999999999998777777888888888888 799999999999999999999


Q ss_pred             HHHHH
Q 028292          172 VLKIL  176 (211)
Q Consensus       172 ~~~~~  176 (211)
                      ...+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            98764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=1.2e-31  Score=197.47  Aligned_cols=165  Identities=28%  Similarity=0.408  Sum_probs=137.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIM   90 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~il   90 (211)
                      +||+++|++|||||||+++++.+.+  ..+.++.+.++....+.+++..+.+.+||++|++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            5899999999999999999988877  34555555567777888888899999999999872  23344556 8999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++.+|+.+.. |+..+.......++|+++|+||+|+...+.+..++...++..++++++++||+++.||+++|++
T Consensus        79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999998887 6666665544568999999999999887888888888888888999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028292          171 LVLKILDTPSL  181 (211)
Q Consensus       171 i~~~~~~~~~~  181 (211)
                      +++.+......
T Consensus       158 l~~~~~~~~~~  168 (221)
T cd04148         158 IVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHhhhcc
Confidence            99999754433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=9.5e-32  Score=200.32  Aligned_cols=161  Identities=26%  Similarity=0.460  Sum_probs=136.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||+++++++.+ ..+.++.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988 45566665 566677888899999999999999998888888889999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhc--------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCcEEEeccCCCCC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYS--------TNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YGCLFLECSAKTRVN  163 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~  163 (211)
                      |++++++|+.+.. |...+....        ...++|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|
T Consensus        80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            9999999999987 555554321        235799999999999977667788888777654 367899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028292          164 VEQCFEELVLKIL  176 (211)
Q Consensus       164 v~~~~~~i~~~~~  176 (211)
                      ++++|++|...+.
T Consensus       159 I~elf~~L~~~~~  171 (247)
T cd04143         159 LDEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.3e-31  Score=189.06  Aligned_cols=159  Identities=31%  Similarity=0.542  Sum_probs=137.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      +||+++|++|||||||++++...  .+ ..+.++.+.++....+.+. +..+.+.+||+||++.+..++..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  44 6777888888777777664 56789999999999998888999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++++|+.+.. |+..+....  .++|+++|+||+|+.+...+...++..+...++++++++||+++.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  157 (164)
T cd04101          81 LVYDVSNKASFENCSR-WVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE  157 (164)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence            9999999999998876 666666543  5699999999999977777777777777778889999999999999999999


Q ss_pred             HHHHHH
Q 028292          170 ELVLKI  175 (211)
Q Consensus       170 ~i~~~~  175 (211)
                      ++.+.+
T Consensus       158 ~l~~~~  163 (164)
T cd04101         158 SLARAF  163 (164)
T ss_pred             HHHHHh
Confidence            998875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1.2e-31  Score=189.98  Aligned_cols=163  Identities=23%  Similarity=0.301  Sum_probs=137.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      .+.+||+++|.+|||||||+++++++.+  ..+.++.+..+....+.+++..+.+.+||++|++.+..++..++.++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            3689999999999999999999999888  46778888777777788888888999999999999988899999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQC  167 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~  167 (211)
                      ++|||++++.+|+.+.. |...+..   ..++|+++|+||+|+.+...+...+..+++..+++ .++++||+++.|++++
T Consensus        82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892          82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence            99999999999998876 5544321   34799999999999965554444455667777777 4799999999999999


Q ss_pred             HHHHHHHHHc
Q 028292          168 FEELVLKILD  177 (211)
Q Consensus       168 ~~~i~~~~~~  177 (211)
                      |+.+.+.+..
T Consensus       158 f~~l~~~~~~  167 (169)
T cd01892         158 FTKLATAAQY  167 (169)
T ss_pred             HHHHHHHhhC
Confidence            9999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-32  Score=176.71  Aligned_cols=169  Identities=49%  Similarity=0.835  Sum_probs=157.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      .++.+|-+++|+-|+|||.|++.+...+| ....++.|.++....+.+.+..+.++||||.|+++++...+.+++++.+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            45778999999999999999999999999 78889999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      +.|||++.+.++.++.. |+...+... +++..+++++||.|++..+.+..+++.+|+.+.++.|+++||++|.+|++.|
T Consensus        88 lmvyditrrstynhlss-wl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             eEEEEehhhhhhhhHHH-HHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence            99999999999999888 777777666 8889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028292          169 EELVLKILDTPS  180 (211)
Q Consensus       169 ~~i~~~~~~~~~  180 (211)
                      -...+.++++-+
T Consensus       166 le~akkiyqniq  177 (215)
T KOG0097|consen  166 LETAKKIYQNIQ  177 (215)
T ss_pred             HHHHHHHHHhhh
Confidence            988888886543

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=4e-31  Score=185.97  Aligned_cols=160  Identities=42%  Similarity=0.748  Sum_probs=138.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|+|||||++++++..+ ....++.+.+.....+.+.+..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999887 444556556666667777788889999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++++.+.. |...+.... ..++|+++++||+|+.....+..++..++....+++++++|++++.|++++++++.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123          81 DITDADSFQKVKK-WIKELKQMR-GNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999998877 666666655 34899999999999987777777888888888899999999999999999999998


Q ss_pred             HHH
Q 028292          173 LKI  175 (211)
Q Consensus       173 ~~~  175 (211)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=2e-31  Score=188.33  Aligned_cols=160  Identities=34%  Similarity=0.566  Sum_probs=133.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~ilv~   92 (211)
                      ||+++|++|||||||+++++...+ ..+.++.+..+ ...+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998877 45555554333 45567788889999999999875 3445667789999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC-CHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQCFEE  170 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~  170 (211)
                      |++++.+|+.+.. |+..+..... ..++|+++|+||+|+.+.+.+..+++..++...+.+|+++||+++. |++++|++
T Consensus        80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999999887 6766665542 4579999999999997777788888889999999999999999995 99999999


Q ss_pred             HHHHHH
Q 028292          171 LVLKIL  176 (211)
Q Consensus       171 i~~~~~  176 (211)
                      +.+.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.4e-33  Score=181.37  Aligned_cols=172  Identities=37%  Similarity=0.670  Sum_probs=159.6

Q ss_pred             EEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 028292           18 LIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT   95 (211)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~   95 (211)
                      ++|++++|||.|+-|+..+.+  ....++.|.++....+..++..+.+++|||.|++++++....+++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999999999988  677889999999999999999999999999999999999999999999999999999


Q ss_pred             ChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292           96 RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      +..||++... |+..+..+. ...+.+++++||+|+.+++.+..++...++..+++||.++||++|-+|+..|-.|.+.+
T Consensus        82 nkasfdn~~~-wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   82 NKASFDNCQA-WLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             cchhHHHHHH-HHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            9999999999 999999998 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCcccCCCCCccc
Q 028292          176 LDTPSLLSEGSSGVKK  191 (211)
Q Consensus       176 ~~~~~~~~~~~~~~~~  191 (211)
                      .+..-..+++.+..-.
T Consensus       160 ~k~~~~~~~~~~~~~~  175 (192)
T KOG0083|consen  160 KKLKMGAPPEGEFADH  175 (192)
T ss_pred             HHhccCCCCCCccccc
Confidence            8877766655544433

>cd04147 Ras_dva Ras-dva subfamily

Probab=100.00  E-value=5.3e-31  Score=191.31  Aligned_cols=193  Identities=27%  Similarity=0.428  Sum_probs=144.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      ||+++|++|||||||++++++..+. .+.++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            6899999999999999999998884 3444443 4555667778888899999999999998888889999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HhCCcEEEeccCCCCCHHHHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-ERVVSKKEGIDFAR-EYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ++++.+|+.+.. |+..+.......++|+++|+||+|+.. ...+..++..+... .++++++++||++|.|++++|++|
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  158 (198)
T cd04147          80 VDDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL  158 (198)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence            999999999887 555555554356899999999999865 35555555554443 456789999999999999999999


Q ss_pred             HHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccC
Q 028292          172 VLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS  210 (211)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  210 (211)
                      .+.+.......+..+... +....+...+.+..+...|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  196 (198)
T cd04147         159 LRQANLPYNLSPALRRRR-ESLPSEIQRRPPMNKTNSCS  196 (198)
T ss_pred             HHHhhcccccchhhHHHH-hhccHhhhcCCCCCCCCccc
Confidence            998875444443222222 22223344444444444454

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=1.2e-30  Score=187.84  Aligned_cols=162  Identities=35%  Similarity=0.590  Sum_probs=134.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      .||+|+|++|+|||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+.......+.++|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998777 44445444333 335667788889999999999888877777889999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES----------ERVVSKKEGIDFAREYGC-LFLECSAKTR  161 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (211)
                      |+++.++|+.+...|...+....  .++|+++|+||+|+.+          .+.+..+++..+++.++. +++++||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            99999999999866888887654  5699999999999854          234556778888888885 8999999999


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 028292          162 VNVEQCFEELVLKILDT  178 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~  178 (211)
                      .|++++|.++.+.+...
T Consensus       159 ~~v~~~f~~l~~~~~~~  175 (187)
T cd04129         159 EGVDDVFEAATRAALLV  175 (187)
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999888643

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=1.5e-30  Score=184.53  Aligned_cols=163  Identities=47%  Similarity=0.835  Sum_probs=142.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...++|+++|++|||||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999998877 556777777787778888998899999999999999988889999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+.......+......+++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  162 (169)
T cd04114          85 LTYDITCEESFRCLPE-WLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL  162 (169)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence            9999999999988877 777666554 45799999999999977777777777777777778999999999999999999


Q ss_pred             HHHHHH
Q 028292          170 ELVLKI  175 (211)
Q Consensus       170 ~i~~~~  175 (211)
                      +|.+.+
T Consensus       163 ~i~~~~  168 (169)
T cd04114         163 DLACRL  168 (169)
T ss_pred             HHHHHh
Confidence            998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=1.1e-30  Score=184.15  Aligned_cols=162  Identities=40%  Similarity=0.659  Sum_probs=136.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||+++++...+ ..+.++.+ ........+++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999887 44444443 334455677888899999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++.+|+.+..++..... .....++|+++|+||+|+.........+...+...++++++++||++++|++++|+++.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~-~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139          80 SITDMESFTATAEFREQILR-VKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999884444444 33256899999999999976555667777788888889999999999999999999999


Q ss_pred             HHHHc
Q 028292          173 LKILD  177 (211)
Q Consensus       173 ~~~~~  177 (211)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T cd04139         159 REIRQ  163 (164)
T ss_pred             HHHHh
Confidence            88753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04149 Arf6 Arf6 subfamily

Probab=99.98  E-value=2.2e-31  Score=188.46  Aligned_cols=155  Identities=24%  Similarity=0.364  Sum_probs=124.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +.++|+++|++|||||||++++..+.+..+.++.+.++..  +..  ..+.+.+||++|++.+...+..++.++|++|+|
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4689999999999999999999988776667777765542  222  457899999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----hCCcEEEeccCCCCCHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-----YGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~  166 (211)
                      ||++++.+|+.+..++...+.... ..++|+++|+||+|+...  +..+++..+...     ..+.++++||++|.|+++
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDRE-MRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHh-hcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            999999999988875655554322 357899999999998543  445555554321     234789999999999999


Q ss_pred             HHHHHHH
Q 028292          167 CFEELVL  173 (211)
Q Consensus       167 ~~~~i~~  173 (211)
                      +|+||.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00154 Rab Rab family

Probab=99.98  E-value=1.3e-30  Score=182.46  Aligned_cols=157  Identities=56%  Similarity=0.943  Sum_probs=140.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++++|||||++++.+..+ ..+.++.+.++....+...+..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988 445788888888888888888899999999999998889999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++++.+.. |...+.... ..++|+++++||+|+........++...+....+++++++|++++.|+++++.+|.
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDK-WLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999998888 776666554 36799999999999975666778888889888899999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04158 ARD1 ARD1 subfamily

Probab=99.98  E-value=7.3e-31  Score=186.08  Aligned_cols=160  Identities=26%  Similarity=0.457  Sum_probs=127.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      ||+++|.++||||||++++.+..+..+.++.+..+.  .+..  ..+.+.+||+||+..+...+..+++++|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            689999999999999999999877667777765543  2332  457899999999999999999999999999999999


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC------CcEEEeccCCCCCHHHHH
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG------CLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++++++.++..++........ ..+.|+++|+||+|+..  .+..+++.++....+      +.++++||++|.|++++|
T Consensus        77 s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999998885555544322 35689999999999854  355666665553222      368899999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 028292          169 EELVLKILDTPSL  181 (211)
Q Consensus       169 ~~i~~~~~~~~~~  181 (211)
                      +||.+.+.+..+.
T Consensus       154 ~~l~~~~~~~~~~  166 (169)
T cd04158         154 DWLSRQLVAAGVL  166 (169)
T ss_pred             HHHHHHHhhcccc
Confidence            9999998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=4e-30  Score=183.32  Aligned_cols=159  Identities=34%  Similarity=0.647  Sum_probs=133.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      .||+++|++|||||||++++.+..+ ..+.++.+..+ ...+.+++..+.+.+|||+|++.+...+...+.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999888 45666665444 345677888899999999999999888888899999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAK  159 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  159 (211)
                      |++++++|+.+...|...+....  .++|+++|+||+|+.+.            ..+...+..+++...+. .++++||+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            99999999998766777776543  57999999999998542            23445677777777775 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028292          160 TRVNVEQCFEELVLKI  175 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~  175 (211)
                      +|.|++++|.+|.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=8.3e-31  Score=187.48  Aligned_cols=161  Identities=23%  Similarity=0.356  Sum_probs=124.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ...+||+++|..+||||||++++..+.+..+.|+.+..+.  .+.  ...+.+++||+||++.+..+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4568999999999999999999998877666777775543  233  345789999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-----CCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-----GCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~  165 (211)
                      |||+++++++......+...+.... ..++|++|++||+|+....  ..++..+...-.     .+.++++||++|+|++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHh-hCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            9999999999888774554443222 3579999999999986543  333333222111     1246689999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      ++|+||.+.+..+
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=186.97  Aligned_cols=168  Identities=39%  Similarity=0.612  Sum_probs=150.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.+||+++|.+|+|||+|..++....+ ..+.|+.. +.+...+.++++.+.+.|+||+|++++..+...++.++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999 56666666 7788888999999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      ||+++++.||+.+..+ +..+........+|+++||||+|+...+.+..+++..++..++++|+++||+.+.+++++|..
T Consensus        81 Vysitd~~SF~~~~~l-~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~  159 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQL-REQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE  159 (196)
T ss_pred             EEECCCHHHHHHHHHH-HHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence            9999999999999994 444444443667899999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028292          171 LVLKILDTPSL  181 (211)
Q Consensus       171 i~~~~~~~~~~  181 (211)
                      |++.+......
T Consensus       160 L~r~~~~~~~~  170 (196)
T KOG0395|consen  160 LVREIRLPREG  170 (196)
T ss_pred             HHHHHHhhhcc
Confidence            99998874443

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2.1e-31  Score=189.81  Aligned_cols=159  Identities=23%  Similarity=0.367  Sum_probs=123.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ...+||+++|.+|||||||++++..+.+..+.|+.+..+..  +..  ..+.+.+||+||+..+..+|..+++++|++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            45699999999999999999999888776667777765543  233  45789999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |||++++.+++....++...+.... ..++|++||+||+|+.+..  ..++..+..     ....+.++++||++|.|++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDE-LRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHh-hcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999988885555554322 3578999999999985432  223322221     1123357789999999999


Q ss_pred             HHHHHHHHHHH
Q 028292          166 QCFEELVLKIL  176 (211)
Q Consensus       166 ~~~~~i~~~~~  176 (211)
                      ++|+||.+.+.
T Consensus       164 e~~~~l~~~~~  174 (175)
T smart00177      164 EGLTWLSNNLK  174 (175)
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.7e-31  Score=187.42  Aligned_cols=153  Identities=22%  Similarity=0.390  Sum_probs=119.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      +||+++|.++||||||++++..+.+..+.|+.+.....  +..  ..+.+.+||+||++.+..++..+++++|++|+|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            58999999999999999999888876677777755432  332  45789999999999999999999999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHH----HhCCcEEEeccCCCCCHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI-DFAR----EYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++++.+|+.+..++...+.... ..++|+++++||+|+.+..  ..++.. .+..    ..++.++++||++|.|++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDE-LRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHH-hcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            9999999988875655554322 3568999999999985432  222322 2211    123457899999999999999


Q ss_pred             HHHHH
Q 028292          169 EELVL  173 (211)
Q Consensus       169 ~~i~~  173 (211)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=4.8e-31  Score=188.91  Aligned_cols=161  Identities=24%  Similarity=0.416  Sum_probs=125.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.+||+++|++|||||||++++..+.+..+.++.+..+..  +..  ..+.+.+||+||++.+..++..+++++|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET--VEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35689999999999999999999888876667777755542  332  45789999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |||++++++|......+...+.... ..++|++||+||.|+.+..  ..++.....     ....+.++++||++|.|++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDE-LRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHh-hcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            9999999999988875655544322 3568999999999985432  222222211     1122357799999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      ++|+||.+.+.+.
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>cd00876 Ras Ras family

Probab=99.97  E-value=4.1e-30  Score=180.46  Aligned_cols=158  Identities=41%  Similarity=0.696  Sum_probs=135.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      ||+++|++|||||||++++++..+ ..+.++.+ +.....+.+.+..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998877 45555555 5556667777778899999999999888889999999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                      .++++++..+..++ ..+.......++|+++|+||+|+.....+..+++..+....+.+++++|++++.|+++++++|++
T Consensus        80 ~~~~~s~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876          80 ITDRESFEEIKGYR-EQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             CCCHHHHHHHHHHH-HHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            99999999988844 44444442468999999999999776777888888898888899999999999999999999987


Q ss_pred             H
Q 028292          174 K  174 (211)
Q Consensus       174 ~  174 (211)
                      .
T Consensus       159 ~  159 (160)
T cd00876         159 E  159 (160)
T ss_pred             h
Confidence            5

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=8.7e-30  Score=182.39  Aligned_cols=165  Identities=38%  Similarity=0.597  Sum_probs=138.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      .||+++|++|+|||||++++++..+ ..+.++.+..+ ...+.+.+..+.+.+||+||+.++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998887 44555554333 455667777889999999999999988989999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |.++..+++.+..++...+.... ..+.|+++|+||+|+...+.+...+...++..++.+++++||+++.|+.+++.++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999885555555433 56789999999999976666777677778888889999999999999999999999


Q ss_pred             HHHHcCCC
Q 028292          173 LKILDTPS  180 (211)
Q Consensus       173 ~~~~~~~~  180 (211)
                      +.+...+.
T Consensus       160 ~~~~~~~~  167 (180)
T cd04137         160 EEIEKVEN  167 (180)
T ss_pred             HHHHHhcC
Confidence            99875543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.2e-30  Score=187.13  Aligned_cols=164  Identities=26%  Similarity=0.364  Sum_probs=128.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|||||||++++....+....++.+.+.....+.. ++..+.+.+|||||++.+..+|..+++++|++|+|
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999998888656677776665555544 34668899999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH--H----hCCcEEEeccCCCCCHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR--E----YGCLFLECSAKTRVNVE  165 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~v~  165 (211)
                      +|++++.+++.+.. |+..+.......++|+++|+||+|+...  ...++...+..  .    .+++++++||++|+|++
T Consensus        83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            99999998888776 4444444333567999999999998543  23333333322  1    12468999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028292          166 QCFEELVLKILDTP  179 (211)
Q Consensus       166 ~~~~~i~~~~~~~~  179 (211)
                      +++++|.+.+.+.+
T Consensus       160 ~l~~~l~~~l~~~~  173 (183)
T cd04152         160 EGLEKLYEMILKRR  173 (183)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999986443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=9.8e-30  Score=180.55  Aligned_cols=157  Identities=34%  Similarity=0.644  Sum_probs=132.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+++|++|||||||+++|++..+ ..+.++.. +.........+..+.+.+||+||++.+.......++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999988 44444443 444555677788899999999999988888888889999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHhCC-cEEEeccCC
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER-----------VVSKKEGIDFAREYGC-LFLECSAKT  160 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (211)
                      |++++++|......|...+....  .++|+++|+||+|+....           .+..+++.++...+++ +++++||++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  157 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT  157 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence            99999999988877887776654  489999999999986544           3456777888888887 999999999


Q ss_pred             CCCHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVL  173 (211)
Q Consensus       161 ~~~v~~~~~~i~~  173 (211)
                      |.|+++++++|.+
T Consensus       158 ~~gi~~l~~~i~~  170 (171)
T cd00157         158 QEGVKEVFEEAIR  170 (171)
T ss_pred             CCCHHHHHHHHhh
Confidence            9999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=3.8e-30  Score=183.09  Aligned_cols=157  Identities=24%  Similarity=0.338  Sum_probs=124.1

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ....++|+++|++|||||||++++.+..+..+.++.+...  ..+.++  .+.+.+||+||++.+...+..++.++|+++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            3456899999999999999999999887766777777433  334444  477999999999988888999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNV  164 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v  164 (211)
                      +|||++++.+|.....++...+.... ..++|+++|+||+|+.+..  ..+++.++..     ..+++++++||++|.|+
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEER-LAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            99999999999888774444443222 4689999999999986543  3444444442     34568999999999999


Q ss_pred             HHHHHHHHH
Q 028292          165 EQCFEELVL  173 (211)
Q Consensus       165 ~~~~~~i~~  173 (211)
                      +++|++++.
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=1.5e-29  Score=178.85  Aligned_cols=161  Identities=29%  Similarity=0.413  Sum_probs=126.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      +||+++|++|||||||++++.++.+....+..... ......+.+..+.+.+|||||...+...+..++..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            48999999999999999999999884433433222 23444566778899999999998887777778899999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHhC--CcEEEeccCCCCCHHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAREYG--CLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ++++.+|+.+...|...+....  .++|+++|+||+|+.+.....  .++.......++  ..++++||+++.|++++|.
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            9999999998766888777654  489999999999996654421  223333333333  3799999999999999999


Q ss_pred             HHHHHHHc
Q 028292          170 ELVLKILD  177 (211)
Q Consensus       170 ~i~~~~~~  177 (211)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=2.7e-30  Score=181.53  Aligned_cols=167  Identities=34%  Similarity=0.603  Sum_probs=152.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ...+|++|+|+.++|||+|+-.+..+.| ..+.|+.. +-+...+.++ +..+.+.+|||+|+++|+.+++..+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3579999999999999999999999999 66777776 7777778884 9999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhC-CcEEE
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYG-CLFLE  155 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~  155 (211)
                      ++||++.+++||+++...|...+..+.  +++|+|+||+|.|+..            ...+..+++..++++.| +.|++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E  158 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE  158 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence            999999999999999999999999887  9999999999999963            24678889999999999 58999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          156 CSAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       156 ~Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      |||++..|++++|+..+..+....+
T Consensus       159 cSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  159 CSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             ehhhhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999999987765

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.8e-28  Score=180.33  Aligned_cols=171  Identities=33%  Similarity=0.549  Sum_probs=144.9

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      .+....+||+++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+||++|++.+...+..++.+++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            4455679999999999999999999888877 678889998888888888889999999999999999888888999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||+++..+|..+.. |+..+....  .++|+++++||+|+.+. .+..+ ...+....++.++++||++|.|+++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~  158 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPN-WHRDIVRVC--ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEK  158 (215)
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999887 666665443  57899999999998543 23333 3456777888999999999999999


Q ss_pred             HHHHHHHHHHcCCCccc
Q 028292          167 CFEELVLKILDTPSLLS  183 (211)
Q Consensus       167 ~~~~i~~~~~~~~~~~~  183 (211)
                      .|.+|.+.+.......-
T Consensus       159 ~f~~ia~~l~~~p~~~~  175 (215)
T PTZ00132        159 PFLWLARRLTNDPNLVF  175 (215)
T ss_pred             HHHHHHHHHhhccccee
Confidence            99999999987766543

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=4e-30  Score=181.33  Aligned_cols=152  Identities=24%  Similarity=0.342  Sum_probs=121.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      .|+++|++|||||||++++.+..+ ..+.|+.+...    ..++...+.+.+||++|+..+..++..+++++|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999998877 56677777542    2344566889999999999999999999999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHhCCcEEEeccCC------CCC
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK----KEGIDFAREYGCLFLECSAKT------RVN  163 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~  163 (211)
                      .+++.+|.....++.. +...  ..++|+++|+||+|+...+.+..    .++..++.+.++.++++||++      ++|
T Consensus        77 ~t~~~s~~~~~~~l~~-~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~  153 (164)
T cd04162          77 SADSERLPLARQELHQ-LLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA  153 (164)
T ss_pred             CCCHHHHHHHHHHHHH-HHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence            9999999888774433 3322  26899999999999966554322    223455566678899999888      999


Q ss_pred             HHHHHHHHHH
Q 028292          164 VEQCFEELVL  173 (211)
Q Consensus       164 v~~~~~~i~~  173 (211)
                      |+++|+.+++
T Consensus       154 v~~~~~~~~~  163 (164)
T cd04162         154 VKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHhc
Confidence            9999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.97  E-value=7.2e-29  Score=165.96  Aligned_cols=166  Identities=22%  Similarity=0.339  Sum_probs=139.0

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +..++.++|+++|..|+||||++++|.+...+...|+.|.......+    ..+++++||.+|+..++..|+.||..+|+
T Consensus        11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen   11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             HhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            44567999999999999999999999999988899999976666555    56889999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHH-HHHHHHHHhCCcEEEeccCCCCC
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVSKK-EGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      +|+|+|.+|+..+++....+...+.... ..+.|++|++||.|+.+.-   .+... +...++.+..++++.|||.+|++
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~eer-laG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEER-LAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED  165 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhhh-hcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence            9999999999999988875666555333 6779999999999996432   22211 23344577789999999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028292          164 VEQCFEELVLKILDT  178 (211)
Q Consensus       164 v~~~~~~i~~~~~~~  178 (211)
                      +.+-++|+...++++
T Consensus       166 l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999873

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.97  E-value=5.2e-29  Score=177.35  Aligned_cols=155  Identities=23%  Similarity=0.397  Sum_probs=121.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      ..++|+++|++|+|||||+++++.+.+..+.++.+.++..  +.++  ...+.+||+||+..+...+..+++++|++|+|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            3589999999999999999999998886667777765543  3333  57899999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-HH----HHhCCcEEEeccCCCCCHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-FA----REYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      +|+++++++......+...+.... ..++|+++++||+|+.+.  ...++..+ +.    ...+++++++||++|.|+++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            999999998887775555544322 357999999999998552  23333222 21    23445799999999999999


Q ss_pred             HHHHHHH
Q 028292          167 CFEELVL  173 (211)
Q Consensus       167 ~~~~i~~  173 (211)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999964

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=2.9e-29  Score=176.00  Aligned_cols=152  Identities=24%  Similarity=0.371  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      ||+++|++++|||||++++..+.+..+.++.+.+..  .+..  ....+.+||+||+..+..++..++..+|++|+|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            689999999999999999988877555666665443  2332  457899999999999999999999999999999999


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHH
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +++.++.....++...+.... ..++|+++|+||+|+....  ...+.....     ...+.+++++||++|.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEE-LKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchh-hcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            999888776665555544322 3579999999999985433  222222111     11234699999999999999999


Q ss_pred             HHHH
Q 028292          170 ELVL  173 (211)
Q Consensus       170 ~i~~  173 (211)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=3.8e-29  Score=176.00  Aligned_cols=153  Identities=20%  Similarity=0.316  Sum_probs=115.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +|+++|++|||||||++++.+...  ..+.++.+.....  +.  ...+.+.+||+||+..+..++..+++++|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753  4567777754432  22  34578999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~  166 (211)
                      |++++.++.....++........ ...++|+++|+||+|+.+...  ..+......     ...+.++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            99999998877763433333211 135799999999999865422  222221111     1234689999999999999


Q ss_pred             HHHHHHH
Q 028292          167 CFEELVL  173 (211)
Q Consensus       167 ~~~~i~~  173 (211)
                      +|+||.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.7e-28  Score=173.55  Aligned_cols=159  Identities=31%  Similarity=0.473  Sum_probs=128.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ..+.++|+++|..|||||||++++..+......||.|....  .+.+.+  +.+.+||.+|+..++..|+.++.++|++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            36789999999999999999999998877667777775444  444444  67899999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HhCCcEEEeccCCCCC
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR------EYGCLFLECSAKTRVN  163 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~  163 (211)
                      +|+|.++++.+......+...+.... ..++|++|++||+|+.+.  ...+++.....      ...+.++.|||.+|+|
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~-~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPE-LKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGG-GTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEecccceeecccccchhhhcchhh-cccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            99999999999988886666665433 568999999999998553  34444443332      2334689999999999


Q ss_pred             HHHHHHHHHHHH
Q 028292          164 VEQCFEELVLKI  175 (211)
Q Consensus       164 v~~~~~~i~~~~  175 (211)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=1.2e-28  Score=177.97  Aligned_cols=157  Identities=23%  Similarity=0.336  Sum_probs=124.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+++|++|||||||++++.+..+..+.++.+...  ..+.+++  ..+.+||+||+..+...|..+++++|++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            356899999999999999999999888766666666433  3444443  578899999999888888899999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------hCCcEE
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE----------------YGCLFL  154 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  154 (211)
                      |+|.++..++.....++...+.. ....+.|+++++||+|+..  .+..++.......                ..+.++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999998777745554443 2246799999999999854  3455666555532                224689


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028292          155 ECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      ++||++|+|++++|+||.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=8.3e-29  Score=174.00  Aligned_cols=153  Identities=24%  Similarity=0.396  Sum_probs=118.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      +|+++|++|||||||++++.+..+....++.+.++..  +.. ...+.+.+||+||+..+...+..++..+|++|+|+|.
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            5899999999999999999999886666777654433  332 2457899999999999888899999999999999999


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHhCCcEEEeccCCCCCHHHHH
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF------AREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      +++.++.....++...+.... ..+.|+++|+||+|+....  ..++....      ....+++++++||++|+|++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          78 SDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999988888775555444322 3689999999999985422  22222211      12234579999999999999999


Q ss_pred             HHHHH
Q 028292          169 EELVL  173 (211)
Q Consensus       169 ~~i~~  173 (211)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=4.1e-28  Score=175.35  Aligned_cols=148  Identities=26%  Similarity=0.404  Sum_probs=122.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-----GKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +||+++|+.+||||||++++.++.+ ..+.++.+.++....+.+.     +..+.+.|||++|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999988 6677888877777776663     567899999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhc------------------CCCCCcEEEEEeCCCCCCCcccCHHH----HHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYS------------------TNQDCIKLLVGNKVDKESERVVSKKE----GIDF  145 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~  145 (211)
                      +|+|||++++.||+++.. |+..+....                  ...++|++||+||+|+.+.+.+..+.    ...+
T Consensus        81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence            999999999999999987 776665431                  12469999999999997666555543    3356


Q ss_pred             HHHhCCcEEEeccCCCC
Q 028292          146 AREYGCLFLECSAKTRV  162 (211)
Q Consensus       146 ~~~~~~~~~~~Sa~~~~  162 (211)
                      +...+++.++.++.+..
T Consensus       160 a~~~~~~~i~~~c~~~~  176 (202)
T cd04102         160 AEQGNAEEINLNCTNGR  176 (202)
T ss_pred             HHhcCCceEEEecCCcc
Confidence            77789999889887653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=1.4e-28  Score=172.57  Aligned_cols=152  Identities=26%  Similarity=0.407  Sum_probs=120.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      ||+++|.+|||||||++++++.....+.++.+.....  +.+.  .+.+.+||+||+..+...+..++..+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            6899999999999999999998876677777755443  3333  46799999999999999999999999999999999


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHHH
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +++.++.....++........ ..+.|+++++||+|+....  ..++..+...     ...++++++||++|.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999988775555544332 5789999999999986543  2233333222     2346899999999999999999


Q ss_pred             HHHH
Q 028292          170 ELVL  173 (211)
Q Consensus       170 ~i~~  173 (211)
                      +|+.
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=7.5e-29  Score=175.36  Aligned_cols=154  Identities=23%  Similarity=0.360  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      +|+++|++|||||||++++.+.....+.++.+...  ..+..  ..+.+++||+||+..+..+|..+++++|++|+|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            48999999999999999999773366778877543  33443  357799999999999999999999999999999999


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HH---HHHHHHHHh--CCcEEEeccCCC------C
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-KK---EGIDFAREY--GCLFLECSAKTR------V  162 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~---~~~~~~~~~--~~~~~~~Sa~~~------~  162 (211)
                      +++.+++.+.. |+..+.......++|+++|+||+|+....... ..   ....++.+.  .+.++++||++|      .
T Consensus        77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            99999998887 44444333324689999999999996654211 11   111222222  246888999998      8


Q ss_pred             CHHHHHHHHHH
Q 028292          163 NVEQCFEELVL  173 (211)
Q Consensus       163 ~v~~~~~~i~~  173 (211)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=6.2e-28  Score=170.71  Aligned_cols=152  Identities=28%  Similarity=0.445  Sum_probs=115.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +|+|+|++|+|||||++++.+...       ..+.++.+..+.  .+.++  ...+.+||+||+..+..++..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999986422       233455554443  33333  5689999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------hCCcEEEeccCC
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-------YGCLFLECSAKT  160 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~  160 (211)
                      +++|+|+++++++.....++...+.... ..++|+++++||+|+...  ....+...+...       .+++++++||++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            9999999999888888774555444322 468999999999998553  333444444332       245899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVL  173 (211)
Q Consensus       161 ~~~v~~~~~~i~~  173 (211)
                      |.|++++++||.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=9.6e-28  Score=172.23  Aligned_cols=157  Identities=22%  Similarity=0.305  Sum_probs=121.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+++|.+|||||||++++.+..+..+.++.+.+..  .+.+.  .+.+.+||+||+..+...|..++.++|++|+
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4569999999999999999999999877655566554332  33333  4678999999999888899999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------hCCcEEEecc
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE------------YGCLFLECSA  158 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  158 (211)
                      |+|++++.++......+...+.. ....++|+++|+||+|+..  .+..+++.+...-            ....++++||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            99999999888877744444432 2246799999999999853  3444554433311            1235899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028292          159 KTRVNVEQCFEELVLK  174 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~  174 (211)
                      +++.|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=4.6e-27  Score=166.97  Aligned_cols=141  Identities=39%  Similarity=0.631  Sum_probs=125.3

Q ss_pred             CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCC
Q 028292           39 EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ  118 (211)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (211)
                      ..+.++.|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+.. |+..+.... ..
T Consensus         7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~~-~~   84 (176)
T PTZ00099          7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNER-GK   84 (176)
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CC
Confidence            5678899999988888999999999999999999999999999999999999999999999999987 666555443 35


Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292          119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       119 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  181 (211)
                      ++|+++|+||+|+...+.+..+++..++..++..++++||++|.||+++|.+|.+.+.+....
T Consensus        85 ~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         85 DVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            789999999999977777888889899998999999999999999999999999999876544

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-29  Score=171.79  Aligned_cols=175  Identities=27%  Similarity=0.504  Sum_probs=160.8

Q ss_pred             CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292            4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY   82 (211)
Q Consensus         4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   82 (211)
                      ++.+...+..||++++|..++||||+|++++.+-| ..+..+.|.++....+.+..+.+++.+||++|+++++.+...++
T Consensus        11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy   90 (246)
T KOG4252|consen   11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY   90 (246)
T ss_pred             CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence            45567778999999999999999999999999988 78889999999999999999999999999999999999999999


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV  162 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (211)
                      +++.+.++||+.+|+.||+...+ |++.+....  ..+|.++|-||+|+.+...+...++..+++..++.++.+|++...
T Consensus        91 rgaqa~vLVFSTTDr~SFea~~~-w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~  167 (246)
T KOG4252|consen   91 RGAQASVLVFSTTDRYSFEATLE-WYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF  167 (246)
T ss_pred             ccccceEEEEecccHHHHHHHHH-HHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence            99999999999999999999999 777776544  789999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCc
Q 028292          163 NVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~~~  181 (211)
                      ||..+|.+|.+.+.+....
T Consensus       168 NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  168 NVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            9999999999998765443

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=7.4e-27  Score=176.67  Aligned_cols=144  Identities=28%  Similarity=0.485  Sum_probs=121.4

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC-------------eEEEEEEEeCCCcc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-------------KKMKLAIWDTAGQE   72 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~   72 (211)
                      ..+....+||+|+|+.|||||||++++.++.+ ..+.++.|.++....+.+++             ..+.+.||||+|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            34566789999999999999999999999988 56778999888777776642             56889999999999


Q ss_pred             cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcC-----------CCCCcEEEEEeCCCCCCCc---c--
Q 028292           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-----------NQDCIKLLVGNKVDKESER---V--  136 (211)
Q Consensus        73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~---~--  136 (211)
                      .+..++..+++++|++|+|||+++..+|+.+.. |+..+.....           ..++|++||+||+|+...+   .  
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s  173 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS  173 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence            999999999999999999999999999999987 7777765531           1358999999999996543   2  


Q ss_pred             -cCHHHHHHHHHHhCC
Q 028292          137 -VSKKEGIDFAREYGC  151 (211)
Q Consensus       137 -~~~~~~~~~~~~~~~  151 (211)
                       +..+++++++..+++
T Consensus       174 ~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        174 GNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccHHHHHHHHHHcCC
Confidence             357899999999875

>cd04155 Arl3 Arl3 subfamily

Probab=99.95  E-value=1.7e-26  Score=164.29  Aligned_cols=153  Identities=22%  Similarity=0.345  Sum_probs=118.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+++|++|||||||++++.+..+..+.++.|....  .+...  ...+.+||+||+..+...+..+++++|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            4579999999999999999999999877666677774443  33334  3578999999998888888888999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--------cEEEeccCCCC
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC--------LFLECSAKTRV  162 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~  162 (211)
                      |+|+++..++.....++........ ..++|+++++||+|+.....  .++.   ....++        .++++||++|+
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~  161 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHIQACSAKTGE  161 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEEEEeECCCCC
Confidence            9999999888877764555444322 46799999999999854322  2222   222222        47899999999


Q ss_pred             CHHHHHHHHHH
Q 028292          163 NVEQCFEELVL  173 (211)
Q Consensus       163 ~v~~~~~~i~~  173 (211)
                      |++++|+||.+
T Consensus       162 gi~~~~~~l~~  172 (173)
T cd04155         162 GLQEGMNWVCK  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01890 LepA LepA subfamily

Probab=99.95  E-value=2.3e-26  Score=164.46  Aligned_cols=153  Identities=25%  Similarity=0.304  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC--C------CCCCC------cceeeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT--F------EELSP------TIGVDFKIKHVAL-----GGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~--~------~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~~~   75 (211)
                      +|+++|++++|||||+++|++..  +      ..+.+      +.|.++....+.+     ++..+.++||||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999999742  1      11212      2233444333332     5677889999999999998


Q ss_pred             ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC---c
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC---L  152 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  152 (211)
                      ..+..++..+|++|+|+|+++..+++.... |....     ..++|+++|+||+|+.+..  ..+...++...+++   .
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence            888889999999999999999877666544 33222     2578999999999985432  12223445555565   4


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 028292          153 FLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       153 ~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      ++++||++|.|+++++++|.+.+
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhC
Confidence            89999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.6e-26  Score=161.78  Aligned_cols=151  Identities=27%  Similarity=0.444  Sum_probs=116.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      |+++|++|||||||++++.+..+ ..+.++.+..+.  .+...  .+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            78999999999999999999987 566666665443  23333  37899999999999999999999999999999999


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHH
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ++..++.....++........ ..++|+++|+||+|+......  .+.....     ....++++++|+++|.|++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999888877774555444322 467899999999998654322  2222111     12336789999999999999999


Q ss_pred             HHHH
Q 028292          170 ELVL  173 (211)
Q Consensus       170 ~i~~  173 (211)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=9.2e-26  Score=159.72  Aligned_cols=155  Identities=17%  Similarity=0.118  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------cccccccCc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT---------LTSSYYRGA   85 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~~   85 (211)
                      +|+++|.+|+|||||+++|++..+.. .+..+++.......+......+++|||||......         .........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            79999999999999999999987621 12222222222222233457899999999742110         000111236


Q ss_pred             cEEEEEEECCChhcH--HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           86 QGIIMVYDVTRRDTF--TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        86 d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      |++|+|+|+++..++  +.... |...+....  .+.|+++|+||+|+.....+..  ...+....+.+++++||++|.|
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLS-LFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHH-HHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            899999999987654  44444 555554332  4799999999999965544332  3445555567899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028292          164 VEQCFEELVLKI  175 (211)
Q Consensus       164 v~~~~~~i~~~~  175 (211)
                      ++++++++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK15494 era GTPase Era; Provisional

Probab=99.94  E-value=7.4e-26  Score=175.98  Aligned_cols=175  Identities=21%  Similarity=0.248  Sum_probs=124.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccc-------cccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLT-------SSYY   82 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~~~   82 (211)
                      .+.++|+++|.+|||||||+|+|++..+..+.+..+++.......+.....++.||||||... +..+.       ...+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            456799999999999999999999988755555555544333322222345789999999743 22211       1236


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKT  160 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  160 (211)
                      .++|++++|+|..+.  |......+...+..    .+.|.++|+||+|+...   ...++.++....+  ..++++||++
T Consensus       130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        130 HSADLVLLIIDSLKS--FDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             hhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            789999999997653  44443335544442    35677889999998543   2345555555544  5799999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcccCCCCCcccccc
Q 028292          161 RVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIF  194 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  194 (211)
                      |.|+++++++|.+.+.+..+.++++.....+..+
T Consensus       201 g~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~  234 (339)
T PRK15494        201 GKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF  234 (339)
T ss_pred             ccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence            9999999999999999999999888766654443

>TIGR00436 era GTP-binding protein Era

Probab=99.94  E-value=7.3e-26  Score=171.54  Aligned_cols=170  Identities=18%  Similarity=0.096  Sum_probs=121.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d   86 (211)
                      +|+++|.+|||||||+|+|++.+.....+.++++.............++.||||||......        .....+.++|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            68999999999999999999988755555555544433222222335799999999643211        1234578999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVE  165 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  165 (211)
                      ++++|+|+++..+++   ..+...+.    ..+.|+++|+||+|+.+... .......+....+. +++++||++|.|++
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~----~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQ----NLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHH----hcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            999999999887664   22444443    35789999999999854322 22333344444454 79999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCCcccc
Q 028292          166 QCFEELVLKILDTPSLLSEGSSGVKKN  192 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~~~~~~~~~~~~~  192 (211)
                      +++++|.+.+.+..+.++++.....+.
T Consensus       154 ~L~~~l~~~l~~~~~~~~~~~~t~~~~  180 (270)
T TIGR00436       154 FLAAFIEVHLPEGPFRYPEDYVTDQPD  180 (270)
T ss_pred             HHHHHHHHhCCCCCCCCCCcccCCCCH
Confidence            999999999999888888776655443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=1.4e-25  Score=173.28  Aligned_cols=162  Identities=18%  Similarity=0.148  Sum_probs=118.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEE--EEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKH--VALGGKKMKLAIWDTAGQER-------FRTLTSSYYRG   84 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   84 (211)
                      -.|.++|.||||||||+++|++.+. ...+.++++.....  +.+. ....+.+||+||..+       +...+..++..
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            3689999999999999999998764 23333333333333  3332 234689999999632       11223334567


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      ++++|+|+|+++.++++.... |...+..+.. ..++|+++|+||+|+.+...+..++...+....+.+++++||++++|
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G  315 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG  315 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence            999999999998888888776 7777766542 24799999999999976554444445555556678999999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028292          164 VEQCFEELVLKILDT  178 (211)
Q Consensus       164 v~~~~~~i~~~~~~~  178 (211)
                      +++++++|.+.+.+.
T Consensus       316 I~eL~~~L~~~l~~~  330 (335)
T PRK12299        316 LDELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988653

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=5.1e-25  Score=153.89  Aligned_cols=158  Identities=28%  Similarity=0.452  Sum_probs=124.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|.+|+|||||++++....+ ..+.++.+.+.....+..++..+.+.+||+||+..+...+...+.+++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999886 45556666666666677777778899999999999988888889999999999


Q ss_pred             EECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           92 YDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        92 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      +|.... .++......+...+.... ..+.|+++++||+|+.... ........+......+++++||+++.|+.+++++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence            999887 677666633555555554 2389999999999996544 3333333444444568999999999999999998


Q ss_pred             HH
Q 028292          171 LV  172 (211)
Q Consensus       171 i~  172 (211)
                      |.
T Consensus       159 l~  160 (161)
T TIGR00231       159 VE  160 (161)
T ss_pred             hh
Confidence            74

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.7e-26  Score=156.87  Aligned_cols=166  Identities=20%  Similarity=0.331  Sum_probs=136.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ......++|+++|--++||||++++|..++.....||.|.......+    ..+.+++||..|+..++..|+.++++.++
T Consensus        12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence            44567899999999999999999999999997778999966655555    37889999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|+|+|.+|++.+...++.+...+.. .+..+.|+++.+||.|++..-   ++...............+..++|.+|+|+
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~-~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAE-PELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcC-cccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            99999999999999988855555543 336789999999999986543   23333333344445567899999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      .+.++|+.+.+...
T Consensus       167 ~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  167 YEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988654

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=9.1e-26  Score=160.01  Aligned_cols=156  Identities=19%  Similarity=0.216  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSY---YRGA   85 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~   85 (211)
                      +|+++|.+|||||||+++|.+... ......+++  .....+.+.+ ...+.+|||||...    ...+...+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            689999999999999999997654 111111222  2222233333 24789999999632    12222232   3469


Q ss_pred             cEEEEEEECCCh-hcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCcEEEeccCCCC
Q 028292           86 QGIIMVYDVTRR-DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YGCLFLECSAKTRV  162 (211)
Q Consensus        86 d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~  162 (211)
                      |++++|+|++++ .+++.+.. |.+.+..... ..++|+++|+||+|+.+.... .+....+... .+.+++++||+++.
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  157 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGE  157 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCC
Confidence            999999999999 78887766 6666654431 247899999999998665443 3334444455 36789999999999


Q ss_pred             CHHHHHHHHHHH
Q 028292          163 NVEQCFEELVLK  174 (211)
Q Consensus       163 ~v~~~~~~i~~~  174 (211)
                      |+++++++|.+.
T Consensus       158 gi~~l~~~i~~~  169 (170)
T cd01898         158 GLDELLRKLAEL  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.94  E-value=6.8e-25  Score=145.35  Aligned_cols=170  Identities=23%  Similarity=0.320  Sum_probs=142.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-cccccccccCc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-RTLTSSYYRGA   85 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~   85 (211)
                      +-+..||+|+|..++|||++++.++.+..   .+..+|....+....-+-.+..-++.|+||.|.... ..+.+.++.-+
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence            34678999999999999999999997765   344445443333333333455567899999997776 56677788999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++++||+..+++||+.+.. +...+.....+..+|+++++||+|+.+++.+..+.+..|+....+..+++++++...+-
T Consensus        86 DafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~  164 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY  164 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence            99999999999999999887 88888888878899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028292          166 QCFEELVLKILDTPS  180 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~  180 (211)
                      +.|..+...+...+.
T Consensus       165 epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  165 EPFTYLASRLHQPQS  179 (198)
T ss_pred             hHHHHHHHhccCCcc
Confidence            999999988875543

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=2.9e-25  Score=162.05  Aligned_cols=156  Identities=21%  Similarity=0.155  Sum_probs=110.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------RTLTSS   80 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   80 (211)
                      +..++|+|+|++|||||||++++++..+ ....+....+.....+.+.+. ..+.+|||||....         ...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            4468999999999999999999999865 211122222233333444332 37899999996321         1111 1


Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                      .+..+|++++|+|++++.++..... |...+.... ..++|+++|+||+|+.+.....     ......+.+++++||++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~-~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKELG-AEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKT  189 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcC-cCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCC
Confidence            3568999999999999988877655 666665543 4579999999999985543321     33445567899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVLKI  175 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~  175 (211)
                      +.|+++++++|.+.+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=2.9e-25  Score=152.95  Aligned_cols=134  Identities=19%  Similarity=0.212  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCccEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE-----RFRTLTSSYYRGAQGII   89 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~i   89 (211)
                      ||+++|++|||||||++++.+..+ .+.++.+.+       +.     -.+|||||..     .+..+.. .++++|++|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~-~~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI-LYKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc-ccccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            899999999999999999998765 223332222       11     1689999972     2333333 478999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCF  168 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~  168 (211)
                      +|||++++.++... . |....       ..|+++|+||+|+.+ +....+++.+++...+. +++++||++|.|++++|
T Consensus        68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999887552 2 33221       249999999999864 33455666777777776 89999999999999999


Q ss_pred             HHHH
Q 028292          169 EELV  172 (211)
Q Consensus       169 ~~i~  172 (211)
                      .++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.9e-24  Score=152.18  Aligned_cols=151  Identities=22%  Similarity=0.177  Sum_probs=102.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      +.|+++|.+|||||||+++|++...    .+..+....+.....+.+.. ...+.+|||||++.+......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            4689999999999999999997432    12222223233333344432 457999999999888776667788999999


Q ss_pred             EEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---hCCcEEEeccCCC
Q 028292           90 MVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFARE---YGCLFLECSAKTR  161 (211)
Q Consensus        90 lv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~  161 (211)
                      +|+|+++.   ++++.+     ..+..   ...+|+++++||+|+.+...  ....+..+....   .+.+++++||+++
T Consensus        80 ~V~d~~~~~~~~~~~~~-----~~~~~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (164)
T cd04171          80 LVVAADEGIMPQTREHL-----EILEL---LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG  151 (164)
T ss_pred             EEEECCCCccHhHHHHH-----HHHHH---hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence            99999873   333221     12221   12248999999999865421  112333344443   3579999999999


Q ss_pred             CCHHHHHHHHHH
Q 028292          162 VNVEQCFEELVL  173 (211)
Q Consensus       162 ~~v~~~~~~i~~  173 (211)
                      .|++++++++..
T Consensus       152 ~~v~~l~~~l~~  163 (164)
T cd04171         152 EGIEELKEYLDE  163 (164)
T ss_pred             cCHHHHHHHHhh
Confidence            999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=5.8e-24  Score=156.82  Aligned_cols=169  Identities=41%  Similarity=0.596  Sum_probs=136.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|+.|||||||+++|....+ ..+.++.+..+...........+.+.+|||+|+++++..+..++.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            49999999999999999999999999 55666777777666666665588899999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHh---CCcEEEe
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREY---GCLFLEC  156 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~  156 (211)
                      ||..+..++..+...|...+.... ..+.|+++++||+|+....            ..............   ...++++
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            999997777777776888887665 3579999999999996653            22333333332222   3348999


Q ss_pred             ccC--CCCCHHHHHHHHHHHHHcCCCcc
Q 028292          157 SAK--TRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       157 Sa~--~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      |++  .+.++++++..++..+.+.....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            999  99999999999999997654333

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=5.8e-25  Score=160.10  Aligned_cols=156  Identities=22%  Similarity=0.252  Sum_probs=104.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC-----------cccccccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG-----------QERFRTLT   78 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~   78 (211)
                      ....++|+++|.+|||||||+++|.+..+. .....+.++....+.+.    .+.+|||||           ++.++..+
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            345689999999999999999999987762 33334555554444433    589999999           34444444


Q ss_pred             cccc----cCccEEEEEEECCChhcHH-H--------HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 028292           79 SSYY----RGAQGIIMVYDVTRRDTFT-N--------LADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF  145 (211)
Q Consensus        79 ~~~~----~~~d~~ilv~d~~~~~s~~-~--------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  145 (211)
                      ..++    ..++++++|+|.++...+. .        ....+...+.    ..++|+++|+||+|+.+..   .+...++
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHH
Confidence            4444    3457888888886532210 0        0010122222    3579999999999985443   2344455


Q ss_pred             HHHhCC---------cEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          146 AREYGC---------LFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       146 ~~~~~~---------~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ...+++         +++++||++| |+++++++|.+.+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            555554         5899999999 9999999999987543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.92  E-value=1.8e-25  Score=147.05  Aligned_cols=161  Identities=24%  Similarity=0.401  Sum_probs=128.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+.+.++|..++|||||++.+..+.+ ....|+.|...+    .+....+.+.+||.||+..++.+|+.|++..+++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            457899999999999999999998877 666777775433    445577889999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      |+|+.+++.+.-.+..+..++.... ..++|++|++||.|+.+.-   .+..+..+....+..+.+|-+|+++..+++.+
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~-l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPS-LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchh-hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence            9999999988877776666666555 7889999999999985542   11122222222334456899999999999999


Q ss_pred             HHHHHHHHHc
Q 028292          168 FEELVLKILD  177 (211)
Q Consensus       168 ~~~i~~~~~~  177 (211)
                      .+||+++...
T Consensus       174 ~~Wli~hsk~  183 (186)
T KOG0075|consen  174 LDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHhhh
Confidence            9999987653

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.1e-23  Score=145.90  Aligned_cols=154  Identities=49%  Similarity=0.735  Sum_probs=120.7

Q ss_pred             EEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 028292           18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR   96 (211)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~   96 (211)
                      |+|++|+|||||++++.+... .........+..............+.+||+||...+...+...++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998876 3333333366777777777778899999999988888777888899999999999999


Q ss_pred             hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           97 RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKE-GIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        97 ~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      +.++.....++....... ...++|+++++||+|+.......... ..........+++++|+.++.|+++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINK-EGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhh-ccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            998888777422333322 36789999999999986655443332 3344555678999999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=8.5e-24  Score=148.08  Aligned_cols=147  Identities=18%  Similarity=0.224  Sum_probs=107.6

Q ss_pred             EEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cCccEE
Q 028292           18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--RGAQGI   88 (211)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~   88 (211)
                      |+|.+|+|||||++++.+... ....+..+.+.....+.+++  ..+.+|||||...+..      ++..++  .++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998764 33334444444445555554  4789999999876554      244455  489999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      |+|+|.++++....    +...+.    ..++|+++|+||+|+.+...+... ...+...++++++++||.++.|+++++
T Consensus        79 i~v~d~~~~~~~~~----~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          79 VNVVDATNLERNLY----LTLQLL----ELGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EEEeeCCcchhHHH----HHHHHH----HcCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence            99999998654322    222222    247899999999999665544333 456667778999999999999999999


Q ss_pred             HHHHHHH
Q 028292          169 EELVLKI  175 (211)
Q Consensus       169 ~~i~~~~  175 (211)
                      +++.+.+
T Consensus       150 ~~l~~~~  156 (158)
T cd01879         150 DAIAELA  156 (158)
T ss_pred             HHHHHHh
Confidence            9998864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.92  E-value=3e-24  Score=142.66  Aligned_cols=174  Identities=25%  Similarity=0.496  Sum_probs=150.5

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ..-.++|.++|++..|||||+-.+.++.+ .++..+.|..+..+.+.+.+..+.+.+||..|++++..+.+.....+-++
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            34578999999999999999999999988 67778889999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-----CCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE-----SERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      +++||++.+.++.++.. |++..+... +.-+| |+|++|.|.-     +.......+++.+++..+++.|.+|+..+.|
T Consensus        97 lFmFDLt~r~TLnSi~~-WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKE-WYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEecCchHHHHHHHH-HHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            99999999999999999 666665443 45566 5679999962     1222335577889999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCcccCCC
Q 028292          164 VEQCFEELVLKILDTPSLLSEGS  186 (211)
Q Consensus       164 v~~~~~~i~~~~~~~~~~~~~~~  186 (211)
                      |+.+|..++..++.-.+..++..
T Consensus       174 v~KIFK~vlAklFnL~~ti~~~~  196 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFNLPWTIPEIL  196 (205)
T ss_pred             HHHHHHHHHHHHhCCceeccccc
Confidence            99999999999999988876644

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.2e-23  Score=148.81  Aligned_cols=156  Identities=19%  Similarity=0.130  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCC-CCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      .|+++|.+|+|||||+++|....+... .+....+.....+... .....+.+|||||+..+..++...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999998877322 2222222222333332 13567999999999888888888889999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH-HHHHHHH------HhCCcEEEeccCCCCCHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK-EGIDFAR------EYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~------~~~~~~~~~Sa~~~~~v~  165 (211)
                      |+++....+...  ....+.    ..++|+++|+||+|+......... ....+..      ..+.+++++|+++|.|++
T Consensus        82 d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T cd01887          82 AADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID  155 (168)
T ss_pred             ECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence            999854322221  112222    357899999999998643211111 1111111      123589999999999999


Q ss_pred             HHHHHHHHHHH
Q 028292          166 QCFEELVLKIL  176 (211)
Q Consensus       166 ~~~~~i~~~~~  176 (211)
                      +++++|.+...
T Consensus       156 ~l~~~l~~~~~  166 (168)
T cd01887         156 DLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHhhh
Confidence            99999988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=8.8e-24  Score=147.69  Aligned_cols=145  Identities=22%  Similarity=0.234  Sum_probs=106.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYR   83 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   83 (211)
                      ++|+++|++|+|||||++++++.......+..+++  .....+...  ...+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987753323333333  333333333  457899999997554321        224567


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      .+|++++|+|++++.+...... +..       ..++|+++|+||+|+.+....       .....+.+++++||+++.|
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~  144 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEG  144 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCC
Confidence            8999999999999877766543 221       367999999999998655433       3344567899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028292          164 VEQCFEELVLKI  175 (211)
Q Consensus       164 v~~~~~~i~~~~  175 (211)
                      +++++.+|.+.+
T Consensus       145 v~~l~~~l~~~~  156 (157)
T cd04164         145 LDELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=4e-25  Score=151.82  Aligned_cols=148  Identities=18%  Similarity=0.252  Sum_probs=101.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------ccccccc--cCc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYY--RGA   85 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~~   85 (211)
                      |+|+++|.||||||||+|+|++.+. .....+|.+.......+......+.++|+||--.+.      .....++  .+.
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            6899999999999999999999885 445556665555544433223678899999943222      2223333  688


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|.|+|+++.+   .-.. +...+.    ..++|+++++||+|....+.+.. +...+.+..+++++++||++++|++
T Consensus        80 D~ii~VvDa~~l~---r~l~-l~~ql~----e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   80 DLIIVVVDATNLE---RNLY-LTLQLL----ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SEEEEEEEGGGHH---HHHH-HHHHHH----HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CEEEEECCCCCHH---HHHH-HHHHHH----HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            9999999998753   2222 222222    46799999999999865554433 3556777889999999999999999


Q ss_pred             HHHHHH
Q 028292          166 QCFEEL  171 (211)
Q Consensus       166 ~~~~~i  171 (211)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=1.3e-23  Score=168.11  Aligned_cols=153  Identities=24%  Similarity=0.219  Sum_probs=113.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFRTL--------TSS   80 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   80 (211)
                      ...++|+++|++|||||||+|+|++.......+.++++..  ...+.+++  ..+.+|||||.......        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            4568999999999999999999998765444444555444  34444544  56789999997654322        235


Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                      +++++|++++|+|++++.+++..   |...+.    ..++|+++|+||+|+...      +...+...++.+++++||++
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~  345 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ  345 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence            67899999999999998887664   333332    357899999999998543      12334556678899999998


Q ss_pred             CCCHHHHHHHHHHHHHcCC
Q 028292          161 RVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~~~  179 (211)
                       .|++++++.+.+.+.+..
T Consensus       346 -~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       346 -LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             -CCHHHHHHHHHHHHHHHh
Confidence             699999999999887643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=7.9e-24  Score=153.23  Aligned_cols=158  Identities=23%  Similarity=0.238  Sum_probs=110.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh--CCCCCC-------------CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS--DTFEEL-------------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT   78 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   78 (211)
                      -+|+++|.+++|||||+++|++  +.+...             ..+.|.++......+......+.+|||||+..+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  444221             1234555655556666667889999999999999999


Q ss_pred             cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------hC
Q 028292           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFARE-------YG  150 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~  150 (211)
                      ..+++++|++++|+|+++.. +..... +.....    ..++|+++|+||+|+..... ...+++.++...       .+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD  156 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence            99999999999999998742 222222 222222    35789999999999864332 123344444422       36


Q ss_pred             CcEEEeccCCCCCHHHH------HHHHHHHHHc
Q 028292          151 CLFLECSAKTRVNVEQC------FEELVLKILD  177 (211)
Q Consensus       151 ~~~~~~Sa~~~~~v~~~------~~~i~~~~~~  177 (211)
                      ++++++||++|.|+.++      +.+|++.+.+
T Consensus       157 ~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~  189 (194)
T cd01891         157 FPVLYASAKNGWASLNLEDPSEDLEPLFDTIIE  189 (194)
T ss_pred             cCEEEeehhccccccccccchhhHHHHHHHHHh
Confidence            78999999999877443      4445554443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK00089 era GTPase Era; Reviewed

Probab=99.91  E-value=1.4e-23  Score=161.07  Aligned_cols=173  Identities=16%  Similarity=0.136  Sum_probs=120.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--------TLTSSYYR   83 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   83 (211)
                      +.-.|+|+|.+|||||||+|+|++.+.....+.+.++.............++.+|||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4567999999999999999999998875555555444443333333334789999999964432        22334567


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRV  162 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  162 (211)
                      .+|++++|+|+++....  ....+...+.    ..+.|+++|+||+|+.............+....+ ..++++||+++.
T Consensus        84 ~~D~il~vvd~~~~~~~--~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP--GDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             cCCEEEEEEeCCCCCCh--hHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            89999999999984221  1121333333    3468999999999996433333334444544444 579999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCcccCCCCCcc
Q 028292          163 NVEQCFEELVLKILDTPSLLSEGSSGVK  190 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~  190 (211)
                      |+++++++|.+.+.+..+.++++.....
T Consensus       158 gv~~L~~~L~~~l~~~~~~y~~~~~td~  185 (292)
T PRK00089        158 NVDELLDVIAKYLPEGPPYYPEDQITDR  185 (292)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            9999999999999988887777654443

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=2.5e-23  Score=162.15  Aligned_cols=153  Identities=24%  Similarity=0.209  Sum_probs=107.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSY   81 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~   81 (211)
                      ..++|+++|.+|+|||||+|+|++... ....+....+.....+.+.+ ...+.||||+|..+         +...+ ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            458999999999999999999998765 11222222334444555533 24789999999621         22222 23


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      +.++|++++|+|++++.+++.... |...+.... ..++|+++|+||+|+.+...+     ... .....+++++||++|
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~-~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg  337 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEA-VEKVLEELG-AEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTG  337 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhc-cCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCC
Confidence            678999999999999988777655 555555443 457899999999998543221     111 122346899999999


Q ss_pred             CCHHHHHHHHHHH
Q 028292          162 VNVEQCFEELVLK  174 (211)
Q Consensus       162 ~~v~~~~~~i~~~  174 (211)
                      .|+++++++|.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=1.3e-23  Score=140.45  Aligned_cols=114  Identities=30%  Similarity=0.613  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCC---CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFE---ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      ||+|+|++|||||||+++|++....   ...+..+.++......+......+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998874   3444555566666777788887899999999988888888889999999999


Q ss_pred             EECCChhcHHHHHHH--HHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           92 YDVTRRDTFTNLADI--WAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                      ||++++.+|+.+..+  |+..+...  ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            999999999998663  34444433  46699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=3.9e-23  Score=159.69  Aligned_cols=159  Identities=18%  Similarity=0.140  Sum_probs=110.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc----ccc---cccccCc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR----TLT---SSYYRGA   85 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---~~~~~~~   85 (211)
                      ..|+++|.+|||||||+++|++... ....+.+........+.+.+ ...+.|||+||..+..    .+.   ...+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4799999999999999999998764 11112222222333333332 3578999999964221    222   2334579


Q ss_pred             cEEEEEEECCCh---hcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           86 QGIIMVYDVTRR---DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        86 d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      +++|+|+|+++.   ++++.+.. |.+.+..+.. ..++|+++|+||+|+.+... ..+....+....+.+++++||+++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            999999999976   56666655 6666655431 35789999999999965533 233444555666789999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028292          162 VNVEQCFEELVLKI  175 (211)
Q Consensus       162 ~~v~~~~~~i~~~~  175 (211)
                      +|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1159 Era GTPase [General function prediction only]

Probab=99.91  E-value=1.2e-23  Score=155.33  Aligned_cols=178  Identities=19%  Similarity=0.141  Sum_probs=136.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--------TLTSSYY   82 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~   82 (211)
                      .+.--|+++|.||||||||+|++++.+....++-..+|.......+.....++.|+||||.....        ......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            35567999999999999999999999998888888888888887777778899999999944332        2334457


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTR  161 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (211)
                      ..+|++++|+|+.+...-.  .....+.+.    ..+.|+++++||.|..............+.....+ .++++||++|
T Consensus        84 ~dvDlilfvvd~~~~~~~~--d~~il~~lk----~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          84 KDVDLILFVVDADEGWGPG--DEFILEQLK----KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             ccCcEEEEEEeccccCCcc--HHHHHHHHh----hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            8899999999999853221  121333333    35689999999999866554222333333333333 7999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCcccCCCCCcccccc
Q 028292          162 VNVEQCFEELVLKILDTPSLLSEGSSGVKKNIF  194 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  194 (211)
                      .|++.+.+.+...+.+..+.++++.-...+..|
T Consensus       158 ~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf  190 (298)
T COG1159         158 DNVDTLLEIIKEYLPEGPWYYPEDQITDRPERF  190 (298)
T ss_pred             CCHHHHHHHHHHhCCCCCCcCChhhccCChHHH
Confidence            999999999999999999999998877766554

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.4e-23  Score=170.30  Aligned_cols=164  Identities=21%  Similarity=0.175  Sum_probs=113.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQER----------FRTLT   78 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~   78 (211)
                      ...++|+++|.+|||||||+++|++.......+..+++..  ...+.+++.  .+.+|||||...          +....
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            3579999999999999999999998876444444444433  344455554  467999999532          22221


Q ss_pred             -cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHH-HHHHhCCcEE
Q 028292           79 -SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGID-FAREYGCLFL  154 (211)
Q Consensus        79 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~  154 (211)
                       ..+++.+|++|+|+|++++.++.+..  +...+.    ..++|+++|+||+|+.+....  ...+..+ +.....++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  360 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV  360 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence             23568999999999999998887764  233332    367999999999999643211  1111211 1122336899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292          155 ECSAKTRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      ++||++|.|++++|..+.+.+.......
T Consensus       361 ~~SAk~g~gv~~lf~~i~~~~~~~~~~i  388 (472)
T PRK03003        361 NISAKTGRAVDKLVPALETALESWDTRI  388 (472)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999999886555443

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=8e-24  Score=150.77  Aligned_cols=154  Identities=23%  Similarity=0.243  Sum_probs=104.1

Q ss_pred             EEcCCCCcHHHHHHHHhhCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCccEE
Q 028292           18 LIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAGQER----FRTLT---SSYYRGAQGI   88 (211)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~d~~   88 (211)
                      ++|++|||||||+++|.+... ......++  +.....+.+.+ ...+.+|||||...    ...++   ...+..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999998864 11111222  22222233331 45689999999632    12222   2346789999


Q ss_pred             EEEEECCCh------hcHHHHHHHHHHHHHhhcCC------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292           89 IMVYDVTRR------DTFTNLADIWAKEIDLYSTN------QDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC  156 (211)
Q Consensus        89 ilv~d~~~~------~s~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      ++|+|++++      .+++.... |...+......      .++|+++|+||+|+..................+..++++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI  157 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence            999999988      46766665 44445433311      479999999999996655433332333444456789999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028292          157 SAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~  174 (211)
                      ||+++.|++++++++.+.
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=1.4e-23  Score=146.69  Aligned_cols=145  Identities=23%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             EEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 028292           17 LLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGAQ   86 (211)
Q Consensus        17 ~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d   86 (211)
                      +++|.+|+|||||+++|++..........+++  .........  ...+.+|||||...+..        .+...+.++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47899999999999999987642222222322  333333333  36789999999776443        3345678899


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVE  165 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  165 (211)
                      ++++|+|..++.+.... . +...+.    ..+.|+++|+||+|+.+....     .......+. .++++|++++.|++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~-~~~~~~----~~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~  147 (157)
T cd01894          79 VILFVVDGREGLTPADE-E-IAKYLR----KSKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIG  147 (157)
T ss_pred             EEEEEEeccccCCccHH-H-HHHHHH----hcCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHH
Confidence            99999999876554432 1 333333    245999999999998654332     223334555 78999999999999


Q ss_pred             HHHHHHHHH
Q 028292          166 QCFEELVLK  174 (211)
Q Consensus       166 ~~~~~i~~~  174 (211)
                      +++++|.+.
T Consensus       148 ~l~~~l~~~  156 (157)
T cd01894         148 DLLDAILEL  156 (157)
T ss_pred             HHHHHHHhh
Confidence            999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.91  E-value=1.5e-23  Score=168.61  Aligned_cols=148  Identities=23%  Similarity=0.234  Sum_probs=110.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY   81 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   81 (211)
                      ..++|+++|.+|+|||||+|+|++.......+..+++..  ...+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            458999999999999999999998775334444444443  33444444  56899999997654322        2235


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      +.++|++++|+|++++.+++.... |..       ..++|+++|+||+|+.+.....        ...+.+++++||++|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg  355 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG  355 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence            788999999999999988775432 322       3578999999999996543321        334568999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028292          162 VNVEQCFEELVLKILD  177 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~  177 (211)
                      .|+++++++|.+.+..
T Consensus       356 ~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        356 EGIDELREAIKELAFG  371 (449)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998865

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.9e-23  Score=169.52  Aligned_cols=155  Identities=21%  Similarity=0.180  Sum_probs=110.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR   83 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (211)
                      ...+|+|+|.+|||||||+|+|++.......+..|.+.......+......+.+|||||...        +...+..+++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            45789999999999999999999877655556666555444443332334688999999652        2333455688


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRV  162 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (211)
                      ++|++|+|+|+++..++... . +...+.    ..++|+++|+||+|+....   .+....+  ..++ .++++||++|.
T Consensus       117 ~aD~il~VvD~~~~~s~~~~-~-i~~~l~----~~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        117 TADAVLFVVDATVGATATDE-A-VARVLR----RSGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             hCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence            99999999999998766432 2 444443    3579999999999985422   1122222  2343 45789999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028292          163 NVEQCFEELVLKILD  177 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~  177 (211)
                      |+++++++|.+.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999998865

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=8.8e-23  Score=164.59  Aligned_cols=164  Identities=23%  Similarity=0.147  Sum_probs=113.5

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT-----------   78 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------   78 (211)
                      ....++|+++|.+|+|||||+++|++.......+..+++.......+......+.+|||||........           
T Consensus       169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            346799999999999999999999987754444555555444433332223468999999965443221           


Q ss_pred             cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-HH----hCCcE
Q 028292           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-RE----YGCLF  153 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~  153 (211)
                      ...++.+|++|+|+|++++.+..+..  +...+.    ..++|+++|+||+|+... ....++..... ..    ..+++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~v  321 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPI  321 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCce
Confidence            23578899999999999987766543  233332    357999999999998621 11122222222 11    24689


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          154 LECSAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       154 ~~~Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      +++||++|.|++++|+++.+.+.....
T Consensus       322 i~~SA~~g~~v~~l~~~i~~~~~~~~~  348 (429)
T TIGR03594       322 VFISALTGQGVDKLLDAIDEVYENANR  348 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999988765543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.6e-23  Score=135.89  Aligned_cols=159  Identities=25%  Similarity=0.383  Sum_probs=130.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+.+|..++||||++..|.-+......|++|..+..+.+    ..+.+++||.+|+...+..|+.++....++|+
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            45799999999999999999999988888888998855554444    55779999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |+|..+....+..+..+...+.... -.+.|++|.+||.|++...  ...++..+.     +....-+.+++|.+|.|+.
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~e-m~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDRE-MRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHh-hhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            9999999888888886666665443 6789999999999996654  334443333     3334568999999999999


Q ss_pred             HHHHHHHHHHH
Q 028292          166 QCFEELVLKIL  176 (211)
Q Consensus       166 ~~~~~i~~~~~  176 (211)
                      +-+.|+.+.+.
T Consensus       168 eglswlsnn~~  178 (180)
T KOG0071|consen  168 EGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHhhcc
Confidence            99999988764

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=1.9e-22  Score=143.10  Aligned_cols=154  Identities=24%  Similarity=0.192  Sum_probs=103.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEE--EEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--KHVALGGKKMKLAIWDTAGQERFRT-----------LTS   79 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   79 (211)
                      +++|+++|++|+|||||++++++..........+++...  ..+..++  ..+.+|||||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            589999999999999999999987652222233332222  3333444  3578999999643311           112


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHHh----CCcEE
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-FAREY----GCLFL  154 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~  154 (211)
                      ..+.++|++++|+|++++.+.....  +.....    ..+.|+++++||+|+........+.... .....    ..+++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV  153 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence            2457899999999999987765432  222222    3568999999999986553222222222 22222    36899


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028292          155 ECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      ++||+++.|++++++++.+.
T Consensus       154 ~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         154 FISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEeccCCCCHHHHHHHHHHh
Confidence            99999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.7e-22  Score=158.85  Aligned_cols=161  Identities=19%  Similarity=0.208  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCccc----ccccccc---cccCcc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQER----FRTLTSS---YYRGAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~~---~~~~~d   86 (211)
                      .|+++|.||||||||+++|++.+. .....++++.......+... ...+.+||+||...    ...+...   .+..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            899999999999999999998764 22233333333332222212 35689999999532    1122233   345689


Q ss_pred             EEEEEEECCCh---hcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292           87 GIIMVYDVTRR---DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV  162 (211)
Q Consensus        87 ~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (211)
                      ++|+|+|+++.   +++++... |...+..+.. ..++|++||+||+|+...    .+....+....+.+++++||++++
T Consensus       239 llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            99999999865   56666655 6666666542 257999999999998432    234455566666889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCc
Q 028292          163 NVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~~~  181 (211)
                      |+++++++|.+.+.+.+..
T Consensus       314 GI~eL~~~L~~~l~~~~~~  332 (424)
T PRK12297        314 GLDELLYAVAELLEETPEF  332 (424)
T ss_pred             CHHHHHHHHHHHHHhCccc
Confidence            9999999999998776543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=1.3e-22  Score=159.76  Aligned_cols=174  Identities=17%  Similarity=0.135  Sum_probs=120.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCccccc-------ccccccccCcc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFR-------TLTSSYYRGAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   86 (211)
                      .|.++|.||||||||+|+|++.+. ...+.+++|.......+... ...+.|+||||...-.       ......+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            799999999999999999998764 44444555544444333222 2358999999964311       11123467899


Q ss_pred             EEEEEEECC---ChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCC
Q 028292           87 GIIMVYDVT---RRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKT  160 (211)
Q Consensus        87 ~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  160 (211)
                      ++++|+|++   +.+.++.... |...+..+.. ..++|+++|+||+|+.....+ .+...++....+  .+++.+||++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             EEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            999999998   4455665554 5555554421 246899999999998654332 233334444444  4789999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcccCCCCCccc
Q 028292          161 RVNVEQCFEELVLKILDTPSLLSEGSSGVKK  191 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~  191 (211)
                      +.|+++++++|.+.+.+.+..++++.....+
T Consensus       318 g~GIdeLl~~I~~~L~~~~~~~~~~~~td~~  348 (390)
T PRK12298        318 GLGVKELCWDLMTFIEENPREEAEEAEAPEK  348 (390)
T ss_pred             CcCHHHHHHHHHHHhhhCcccCCcccccCcc
Confidence            9999999999999999887777766554433

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=2.2e-22  Score=145.93  Aligned_cols=162  Identities=19%  Similarity=0.169  Sum_probs=112.0

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------RFR   75 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~   75 (211)
                      +......++|+++|.+|+|||||++++++..+ ..+.++.+.+........   ...+.||||||..          .+.
T Consensus        18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~   94 (196)
T PRK00454         18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ   94 (196)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence            45566789999999999999999999999864 566667776555444333   2579999999942          222


Q ss_pred             cccccccc---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHhC
Q 028292           76 TLTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAREYG  150 (211)
Q Consensus        76 ~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~  150 (211)
                      .....++.   ..+++++++|.+++.+.....  +...+.    ..++|+++++||+|+.+.....  .+++........
T Consensus        95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~  168 (196)
T PRK00454         95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD  168 (196)
T ss_pred             HHHHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence            33333444   346788899988765443311  222332    3578999999999986543221  222334444446


Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          151 CLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       151 ~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      .+++++||+++.|++++++.|.+.+.+
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            799999999999999999999887764

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=3.4e-22  Score=165.19  Aligned_cols=157  Identities=24%  Similarity=0.282  Sum_probs=117.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC-------C-CCCCC------cceeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT-------F-EELSP------TIGVDFKIKHVAL-----GGKKMKLAIWDTAGQER   73 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~-------~-~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~   73 (211)
                      .-||+++|+.++|||||+++|+...       + ..+.+      ..|.++....+.+     ++..+.++||||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998752       1 11212      2355555444333     46678999999999999


Q ss_pred             ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--
Q 028292           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC--  151 (211)
Q Consensus        74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  151 (211)
                      +...+..++..+|++|+|+|+++..+++.... |....     ..++|+++|+||+|+.....  .+...++...+++  
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~-----~~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~~~  154 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLAL-----ENDLEIIPVINKIDLPSADP--ERVKKEIEEVIGLDA  154 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHH-----HcCCCEEEEEECcCCCccCH--HHHHHHHHHHhCCCc
Confidence            99889999999999999999999877766555 43333     24689999999999854321  2223344455565  


Q ss_pred             -cEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          152 -LFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       152 -~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                       .++++||++|.|+++++++|.+.+..
T Consensus       155 ~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       155 SEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence             48999999999999999999987754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.7e-22  Score=161.88  Aligned_cols=166  Identities=15%  Similarity=0.128  Sum_probs=111.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc----c---ccccccccCc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF----R---TLTSSYYRGA   85 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~   85 (211)
                      ...|+|+|.||||||||+++|++.+. .....++++.......+......++|||+||....    .   ......+..+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            35899999999999999999998765 22333444444333333323357999999995321    1   1122245778


Q ss_pred             cEEEEEEECCCh----hcHHHHHHHHHHHHHhhc----------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q 028292           86 QGIIMVYDVTRR----DTFTNLADIWAKEIDLYS----------TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC  151 (211)
Q Consensus        86 d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      |++|+|+|+++.    ..+.++.. +...+..+.          ...++|++||+||+|+.+.... .+.........++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            999999999853    34444333 444444332          1357899999999998654332 2222333445578


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292          152 LFLECSAKTRVNVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       152 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  181 (211)
                      +++++||++++|+++++.+|.+.+...+..
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~  345 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEARAA  345 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999998776543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=2.1e-22  Score=145.05  Aligned_cols=155  Identities=19%  Similarity=0.146  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCc---------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPT---------------IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (211)
                      +|+|+|.+|+|||||+++|++.........               .+.+.......+......+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999998776322211               11222222222333356799999999988888888


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH---------
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGIDFARE---------  148 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---------  148 (211)
                      .+++.+|++++|+|++++.+.....  +.....    ..+.|+++++||+|+......  ...++.+....         
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8899999999999998876543322  222222    367999999999998652221  12233333332         


Q ss_pred             -----hCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          149 -----YGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       149 -----~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                           ...+++++||++|.|+++++.+|.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 356899999999999999999999886

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04163 Era Era subfamily

Probab=99.89  E-value=3e-22  Score=141.13  Aligned_cols=156  Identities=18%  Similarity=0.121  Sum_probs=105.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRG   84 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   84 (211)
                      ..+|+++|.+|+|||||++++++.......+....+..............+.+|||||......        .....+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD   82 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999876633333222222222223333456789999999654322        23345788


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCC
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVN  163 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  163 (211)
                      +|++++|+|++++.+.  ....+...+.    ..+.|+++|+||+|+........+....+....+ .+++++|++++.|
T Consensus        83 ~d~i~~v~d~~~~~~~--~~~~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          83 VDLVLFVVDASEPIGE--GDEFILELLK----KSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             CCEEEEEEECCCccCc--hHHHHHHHHH----HhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            9999999999987221  1121333333    2368999999999986433333333444444443 6899999999999


Q ss_pred             HHHHHHHHHHH
Q 028292          164 VEQCFEELVLK  174 (211)
Q Consensus       164 v~~~~~~i~~~  174 (211)
                      +++++++|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.2e-22  Score=145.47  Aligned_cols=158  Identities=15%  Similarity=0.081  Sum_probs=102.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC----CC----CC--CCCcceeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD----TF----EE--LSPTIGVDFKIKHVA----------LGGKKMKLAIWDTAGQER   73 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~----~~----~~--~~~~~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~   73 (211)
                      +||+++|++++|||||+++|+..    .+    .+  ...+....+....+.          ..+..+.+++|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    11    11  112223223333322          123367899999999865


Q ss_pred             ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH----
Q 028292           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGIDFAR----  147 (211)
Q Consensus        74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~----  147 (211)
                      +..........+|++++|+|+++......... +. ...    ..++|+++++||+|+......  ..++..+...    
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~  154 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGE----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE  154 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            54333344567899999999988654433322 21 111    236799999999998543221  1222222211    


Q ss_pred             ---HhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          148 ---EYGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       148 ---~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                         ..+++++++||++|.|+++++++|.+++.-
T Consensus       155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence               135789999999999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.89  E-value=2.6e-22  Score=143.46  Aligned_cols=152  Identities=18%  Similarity=0.188  Sum_probs=105.5

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------c
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------R   73 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~   73 (211)
                      +.+.+..+.++|+++|++|+|||||++++++..+ ..+.++.+.+.....+..++   .+.+|||||..          .
T Consensus        10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~   86 (179)
T TIGR03598        10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEK   86 (179)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHH
Confidence            3466678889999999999999999999998864 55566666666555554443   68999999942          2


Q ss_pred             cccccccccc---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH
Q 028292           74 FRTLTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFARE  148 (211)
Q Consensus        74 ~~~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~  148 (211)
                      +..+...+++   .++++++|+|.+++.+.....  +...+.    ..++|+++++||+|+.....  ...+++++....
T Consensus        87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~  160 (179)
T TIGR03598        87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKK  160 (179)
T ss_pred             HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence            2223333443   458999999998865554432  333333    35789999999999864322  223344445554


Q ss_pred             hC--CcEEEeccCCCCCHH
Q 028292          149 YG--CLFLECSAKTRVNVE  165 (211)
Q Consensus       149 ~~--~~~~~~Sa~~~~~v~  165 (211)
                      .+  ..++++||++|+|++
T Consensus       161 ~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       161 DADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             ccCCCceEEEECCCCCCCC
Confidence            43  489999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=1.3e-21  Score=161.00  Aligned_cols=155  Identities=17%  Similarity=0.221  Sum_probs=109.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ..+..+|+++|++++|||||+++|.+..+. ...+....+.....+.+.+. ..++||||||++.|..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            457789999999999999999999987762 22222223333333444332 2789999999999999998889999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-------C--CcEEEeccC
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-------G--CLFLECSAK  159 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~  159 (211)
                      |+|+|+++....+.... + ....    ..++|+++++||+|+.+.   ..++........       +  .+++++||+
T Consensus       163 ILVVda~dgv~~qT~e~-i-~~~~----~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk  233 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEA-I-SHAK----AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL  233 (587)
T ss_pred             EEEEECCCCCCHhHHHH-H-HHHH----HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence            99999987532222211 2 1111    467999999999998543   223333333222       2  479999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028292          160 TRVNVEQCFEELVLK  174 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~  174 (211)
                      +|+|+++++++|...
T Consensus       234 tGeGI~eLl~~I~~~  248 (587)
T TIGR00487       234 TGDGIDELLDMILLQ  248 (587)
T ss_pred             CCCChHHHHHhhhhh
Confidence            999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=4.6e-22  Score=144.80  Aligned_cols=160  Identities=20%  Similarity=0.204  Sum_probs=101.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC----CCCC--CcceeeeEEEEEE-----------------------EC--C----
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF----EELS--PTIGVDFKIKHVA-----------------------LG--G----   58 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~----~~~~--~~~~~~~~~~~~~-----------------------~~--~----   58 (211)
                      ++|+++|+.|+|||||+..+.+...    .+..  .+....+......                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            5899999999999999999975421    1111  1111111110000                       00  0    


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-
Q 028292           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-  137 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-  137 (211)
                      ....+.||||||++.+...+...+..+|++++|+|++++.........+. .+..   ....|+++++||+|+...... 
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~~~---~~~~~iiivvNK~Dl~~~~~~~  156 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-ALEI---MGLKHIIIVQNKIDLVKEEQAL  156 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HHHH---cCCCcEEEEEEchhccCHHHHH
Confidence            12678999999998888877778889999999999987421111111121 1221   123578999999998543221 


Q ss_pred             -CHHHHHHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          138 -SKKEGIDFAREY---GCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       138 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                       ..++..++....   +.+++++||++|+|+++++++|.+.+.+
T Consensus       157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence             112333333332   5689999999999999999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=1.3e-21  Score=155.74  Aligned_cols=157  Identities=20%  Similarity=0.170  Sum_probs=107.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc--ccccc------cccc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF--RTLTS------SYYR   83 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~   83 (211)
                      ..+|+++|.+|||||||+|+|++.... ...+..+.+.....+.+.+. ..+.+|||+|....  ...+.      ..+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999987652 12222223333334444432 26789999996321  22222      2357


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCc-EEEeccCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRV  162 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  162 (211)
                      .+|++|+|+|++++.+++.+.. +...+.... ..++|+++|+||+|+.+...   ... . ....+.+ ++.+||++|.
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~-~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~  348 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEA-VNTVLEEID-AHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGA  348 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHH-HHHHHHHhc-cCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCC
Confidence            8999999999999988777654 555554443 45799999999999854311   111 1 1123555 5889999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028292          163 NVEQCFEELVLKILD  177 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~  177 (211)
                      |+++++++|.+.+..
T Consensus       349 GIdeL~e~I~~~l~~  363 (426)
T PRK11058        349 GIPLLFQALTERLSG  363 (426)
T ss_pred             CHHHHHHHHHHHhhh
Confidence            999999999998854

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=3.9e-22  Score=139.52  Aligned_cols=142  Identities=17%  Similarity=0.152  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccccccccCccEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~il   90 (211)
                      +|+++|.+|+|||||+++|.+... ....+.+       +.+...    .+|||||...    +.......+.++|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            799999999999999999886432 1112211       122222    2699999622    21112233689999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--cEEEeccCCCCCHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC--LFLECSAKTRVNVEQCF  168 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~  168 (211)
                      |+|+++.+++..  . +...+     ..++|+++++||+|+.+   ...+...++....++  +++++||++|+|+++++
T Consensus        71 v~d~~~~~s~~~--~-~~~~~-----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         71 VHGANDPESRLP--A-GLLDI-----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEeCCCcccccC--H-HHHhc-----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            999998876632  1 22211     24679999999999854   234566677777775  89999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028292          169 EELVLKILDTP  179 (211)
Q Consensus       169 ~~i~~~~~~~~  179 (211)
                      .++.+.+.+..
T Consensus       140 ~~l~~~~~~~~  150 (158)
T PRK15467        140 DYLASLTKQEE  150 (158)
T ss_pred             HHHHHhchhhh
Confidence            99988876543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.88  E-value=1.3e-21  Score=142.25  Aligned_cols=119  Identities=20%  Similarity=0.306  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc-cEEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA-QGIIMVYD   93 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~ilv~d   93 (211)
                      +|+++|+++||||+|+++|....+....++.............+....+.+||+||+..++..+..+++++ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988744444433222222222123456799999999999988888889998 99999999


Q ss_pred             CCCh-hcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCC
Q 028292           94 VTRR-DTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        94 ~~~~-~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~  133 (211)
                      +.+. .++.....+++..+.... ...++|+++++||+|+..
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            9998 677777775665554322 136899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=1.1e-21  Score=158.22  Aligned_cols=152  Identities=23%  Similarity=0.196  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccCcc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSYYRGAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~d   86 (211)
                      +|+++|.+|||||||+|+|++..........|.+.......+......+.+|||||..        .+......++.++|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            5899999999999999999987764455555554443333332233468999999952        33344566788999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVE  165 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  165 (211)
                      ++++|+|..+..+.... . +...++    ..++|+++|+||+|+......    . ......++ .++++||++|.|++
T Consensus        81 ~vl~vvD~~~~~~~~d~-~-i~~~l~----~~~~piilVvNK~D~~~~~~~----~-~~~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        81 VILFVVDGREGLTPEDE-E-IAKWLR----KSGKPVILVANKIDGKKEDAV----A-AEFYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             EEEEEEeCCCCCCHHHH-H-HHHHHH----HhCCCEEEEEECccCCccccc----H-HHHHhcCCCCeEEEeCCcCCChH
Confidence            99999999886544332 1 333333    247899999999998654321    1 22345676 79999999999999


Q ss_pred             HHHHHHHHHHHc
Q 028292          166 QCFEELVLKILD  177 (211)
Q Consensus       166 ~~~~~i~~~~~~  177 (211)
                      ++++++.+.+.+
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.88  E-value=3.5e-22  Score=130.82  Aligned_cols=160  Identities=24%  Similarity=0.354  Sum_probs=126.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.|+|+++|-.++|||||+..|.+.......|+.|.  ..+.+.++ .++.+++||.+|+...+..|..++.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GF--n~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGF--NTKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCc--ceEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            6789999999999999999999999888888888884  44444443 46799999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK---EGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      |+|.+|...|+++-..+..++.... ...+|+.+.+||.|+.-...+...   .-........+.+.+|||.+++|+.+-
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeK-l~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg  170 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEK-LAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG  170 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhh-hhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence            9999999999988775655555443 677999999999998543322211   111222233457899999999999999


Q ss_pred             HHHHHHH
Q 028292          168 FEELVLK  174 (211)
Q Consensus       168 ~~~i~~~  174 (211)
                      .+|+...
T Consensus       171 ~~wv~sn  177 (185)
T KOG0074|consen  171 SDWVQSN  177 (185)
T ss_pred             chhhhcC
Confidence            9888643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=2.1e-21  Score=156.78  Aligned_cols=162  Identities=23%  Similarity=0.168  Sum_probs=113.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----------TS   79 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~   79 (211)
                      ...++|+++|.+|+|||||+++|++.......+..|++.......+......+.+|||||.......           ..
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            4579999999999999999999998775445555666666555444334456889999995432211           12


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHH----HhCCcEE
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI-DFAR----EYGCLFL  154 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~  154 (211)
                      .++..+|++|+|+|++++.+..+..  +...+.    ..++|+++|+||+|+.+...  .++.. +...    ...++++
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence            3567899999999999987766543  233332    35789999999999863321  11111 1111    1246899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          155 ECSAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      ++||++|.|++++++.+.+...+...
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~~~  348 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENANR  348 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999887765443

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=4e-21  Score=160.49  Aligned_cols=157  Identities=17%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCcce--eeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ..+..+|+|+|+.++|||||+++|....+.. ......  ...+...+...+....++||||||+..|..++...+..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            4577899999999999999999999876622 111121  1223333334445688999999999999999998999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHhC--CcEEEec
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF-------AREYG--CLFLECS  157 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~S  157 (211)
                      ++|+|+|+++....+.... +. .+.    ..++|+++++||+|+....   ..+..+.       ...++  ++++++|
T Consensus       321 iaILVVDA~dGv~~QT~E~-I~-~~k----~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VS  391 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEA-IN-YIQ----AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPIS  391 (742)
T ss_pred             EEEEEEECcCCCChhhHHH-HH-HHH----hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEE
Confidence            9999999988533222221 21 121    4679999999999986532   2222221       12233  6899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028292          158 AKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~~~  175 (211)
                      |++|.|+++++++|....
T Consensus       392 AktG~GIdeLle~I~~l~  409 (742)
T CHL00189        392 ASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCCHHHHHHhhhhhh
Confidence            999999999999998764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=1.4e-21  Score=157.74  Aligned_cols=148  Identities=24%  Similarity=0.227  Sum_probs=104.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR   83 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (211)
                      .+|+++|.+|||||||+++|.+..........+.+  .......+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987753333444443  3333444444  6789999999876        2223445678


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRV  162 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (211)
                      ++|++|+|+|++++.+..+..  +...+.    ..++|+++|+||+|+...    .....++ ...++ .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~--~~~~l~----~~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEE--IAKILR----KSNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998864443211  223333    247899999999996431    1222222 35566 48999999999


Q ss_pred             CHHHHHHHHHHH
Q 028292          163 NVEQCFEELVLK  174 (211)
Q Consensus       163 ~v~~~~~~i~~~  174 (211)
                      |++++++++...
T Consensus       149 gv~~l~~~I~~~  160 (435)
T PRK00093        149 GIGDLLDAILEE  160 (435)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999883

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=3.6e-21  Score=159.00  Aligned_cols=155  Identities=21%  Similarity=0.230  Sum_probs=113.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      +.|+++|++++|||||+++|++...    .+..+..+.+.....+...+  ..+.|||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            4799999999999999999996432    22333334344444455544  78999999999999888888889999999


Q ss_pred             EEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHh----CCcEEEeccC
Q 028292           90 MVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--SKKEGIDFAREY----GCLFLECSAK  159 (211)
Q Consensus        90 lv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~  159 (211)
                      +|+|+++.   ++++.+     ..+.    ..++| +++|+||+|+.+...+  ..+++.++....    +++++++||+
T Consensus        79 LVVDa~~G~~~qT~ehl-----~il~----~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL-----AVLD----LLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEECCCCCcHHHHHHH-----HHHH----HcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            99999984   344332     2222    24677 9999999999654432  233444555544    4789999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q 028292          160 TRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~  179 (211)
                      +|.|+++++.+|...+....
T Consensus       150 tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       150 TGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             CCCCchhHHHHHHHHHHhCC
Confidence            99999999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=1.2e-21  Score=141.04  Aligned_cols=159  Identities=21%  Similarity=0.205  Sum_probs=107.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCC--C---------------CCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--E---------------LSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQE   72 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~   72 (211)
                      +.++|+++|+.++|||||+.+|+.....  .               .....+.+.......+.  .....++++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999864421  1               00111222222222222  455789999999999


Q ss_pred             cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHH-HHHHHh-
Q 028292           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGI-DFAREY-  149 (211)
Q Consensus        73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~-  149 (211)
                      .+.......+..+|++|+|+|+.+........  ....+.    ..++|+++++||+|+...+. ...++.. .+.+.. 
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeeccccccccccc--cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            98888888899999999999999774433222  333333    46788999999999862111 0011111 232332 


Q ss_pred             -----CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          150 -----GCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       150 -----~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                           .++++++||.+|.|++++++.|.+.+.
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                 257999999999999999999988753

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.7e-22  Score=135.21  Aligned_cols=161  Identities=27%  Similarity=0.384  Sum_probs=125.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY   82 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   82 (211)
                      ...+.|+++|.-++|||||+..+.....        ....++.|....  .+.+.  ...+.+||..|++..+++|..++
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence            3458899999999999999998864321        344455553333  33333  45799999999999999999999


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HhCCcEEEe
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR------EYGCLFLEC  156 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~  156 (211)
                      ..++++|+++|+++++.|+.....+...+.... ..++|+++.+||.|+.+...  .+++.....      ....++.++
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~-leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEK-LEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH-hcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccc
Confidence            999999999999999999998886666665544 78999999999999855432  233332222      223689999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028292          157 SAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ||.+|+||++...|+...+..+
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999999877

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=7e-21  Score=160.33  Aligned_cols=155  Identities=17%  Similarity=0.221  Sum_probs=109.7

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ...+...|+|+|+.++|||||+++|....+. ........+.....+.+.  ...++||||||+..|..++...+..+|+
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCE
Confidence            3568889999999999999999999887662 222222222222333333  3579999999999999999888999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-------HHHHhC--CcEEEecc
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-------FAREYG--CLFLECSA  158 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa  158 (211)
                      +|+|+|+++...-+.... |. ...    ..++|++|++||+|+....   ......       +...++  ++++++||
T Consensus       364 aILVVdAddGv~~qT~e~-i~-~a~----~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSA  434 (787)
T PRK05306        364 VVLVVAADDGVMPQTIEA-IN-HAK----AAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSA  434 (787)
T ss_pred             EEEEEECCCCCCHhHHHH-HH-HHH----hcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence            999999988432222111 21 111    4679999999999985432   111111       122333  68999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028292          159 KTRVNVEQCFEELVLK  174 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~  174 (211)
                      ++|.|+++++++|...
T Consensus       435 ktG~GI~eLle~I~~~  450 (787)
T PRK05306        435 KTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCchHHHHhhhhh
Confidence            9999999999999864

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.4e-21  Score=134.19  Aligned_cols=166  Identities=32%  Similarity=0.509  Sum_probs=140.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...++++++|+.|.||||++++++.+.+ ..+.++.|.+.....+.-+...+++..|||.|++.+......++-++.++|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            4679999999999999999999999999 568889998888887776666799999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ++||+..+-++.++..++....+ .  ..++||++.+||.|.....  .......+.+..++.++++||+.+.|.+.-|.
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~r-v--~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl  162 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVR-V--RENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL  162 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHH-H--hcCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchH
Confidence            99999999999988884444444 3  3679999999999974433  22233345667788999999999999999999


Q ss_pred             HHHHHHHcCCCc
Q 028292          170 ELVLKILDTPSL  181 (211)
Q Consensus       170 ~i~~~~~~~~~~  181 (211)
                      |+.+.+.....+
T Consensus       163 ~LarKl~G~p~L  174 (216)
T KOG0096|consen  163 WLARKLTGDPSL  174 (216)
T ss_pred             HHhhhhcCCCCe
Confidence            999999876543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.87  E-value=8.8e-21  Score=156.98  Aligned_cols=160  Identities=24%  Similarity=0.278  Sum_probs=115.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCC--CC------C------CCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FE------E------LSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ   71 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~------~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~   71 (211)
                      ++..||+++|+.++|||||+.+|+...  +.      .      .....|.++....+.+     ++..+.++||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            355699999999999999999998632  11      0      1122344444333322     455789999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC  151 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      .++...+..++..+|++|+|+|+++....+.... |....     ..++|+++|+||+|+.....  .....++...+++
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~  156 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGI  156 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCC
Confidence            9999889899999999999999998766655444 33322     35789999999999854321  1122334344555


Q ss_pred             c---EEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          152 L---FLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       152 ~---~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      .   ++++||++|.|+++++++|.+.+...
T Consensus       157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        157 DASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             CcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            3   89999999999999999999887543

>cd00880 Era_like Era (E

Probab=99.86  E-value=4.2e-21  Score=134.12  Aligned_cols=151  Identities=21%  Similarity=0.168  Sum_probs=104.2

Q ss_pred             EEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-------cccccccCccEEE
Q 028292           18 LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFRT-------LTSSYYRGAQGII   89 (211)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~i   89 (211)
                      ++|++|+|||||++++.+..........+.+........... ...+.+||+||......       .....+..+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            589999999999999998766333333333322222222211 45799999999765543       3334678999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK---EGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      +|+|.++........  +.....    ..+.|+++|+||+|+.........   .........+.+++++|++++.|+++
T Consensus        81 ~v~~~~~~~~~~~~~--~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          81 FVVDADLRADEEEEK--LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEeCCCCCCHHHHH--HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            999999987766543  122222    468999999999998655433322   12233334567999999999999999


Q ss_pred             HHHHHHHH
Q 028292          167 CFEELVLK  174 (211)
Q Consensus       167 ~~~~i~~~  174 (211)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=6.5e-21  Score=161.43  Aligned_cols=164  Identities=20%  Similarity=0.183  Sum_probs=112.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccc----------cccc-
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQER----------FRTL-   77 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-   77 (211)
                      +..++|+++|.+|||||||+|+|++.......+..+++..  ...+.+++.  .+.+|||||...          +..+ 
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence            3568999999999999999999999875333333343333  334455554  467999999532          1111 


Q ss_pred             ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-HHh----CCc
Q 028292           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-REY----GCL  152 (211)
Q Consensus        78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~  152 (211)
                      ....++.+|++++|+|+++..++++... + ..+.    ..++|+++|+||+|+.+...  .+...... ..+    ..+
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~i-~-~~~~----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~  597 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLKV-M-SMAV----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWAR  597 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCC
Confidence            1234688999999999999888776543 2 2232    35799999999999954322  11111111 111    246


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHcCCCcccC
Q 028292          153 FLECSAKTRVNVEQCFEELVLKILDTPSLLSE  184 (211)
Q Consensus       153 ~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~  184 (211)
                      ++++||++|.|++++++.+.+.+.......+.
T Consensus       598 ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T  629 (712)
T PRK09518        598 RVNLSAKTGWHTNRLAPAMQEALESWDQRIPT  629 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence            79999999999999999999998875554443

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=1.3e-20  Score=159.41  Aligned_cols=154  Identities=16%  Similarity=0.172  Sum_probs=118.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------cccc-
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------TSSY-   81 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~-   81 (211)
                      .++|+++|++|||||||+|+|++... ...+..|.+.......+......+.+|||||...+...          ...+ 
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            47899999999999999999998765 55666888887777777777788999999997665421          1122 


Q ss_pred             -ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292           82 -YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        82 -~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                       ...+|++++|+|.++.+..   .. +...+.    ..++|+++++||+|+.+.+.+ ..+..++.+.++++++++||.+
T Consensus        82 ~~~~aD~vI~VvDat~ler~---l~-l~~ql~----e~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         82 LSGDADLLINVVDASNLERN---LY-LTLQLL----ELGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             hccCCCEEEEEecCCcchhh---HH-HHHHHH----HcCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence             2478999999999886432   22 222232    357999999999998655544 3455677788999999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVLKIL  176 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~  176 (211)
                      ++|++++.+.+.+...
T Consensus       153 g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        153 GRGIEALKLAIDRHQA  168 (772)
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999987653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=7.7e-21  Score=160.99  Aligned_cols=155  Identities=19%  Similarity=0.140  Sum_probs=109.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR   83 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (211)
                      ...+|+++|.+|||||||+|+|++.......+.+|.+..............+.+|||||...        +......++.
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            44689999999999999999999887655566667666555544433345788999999653        2233445678


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRV  162 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (211)
                      .+|++|+|+|+++.....+  ..|...+.    ..++|+++|+||+|+....    ....++ ...+. ..+++||++|.
T Consensus       354 ~aD~iL~VvDa~~~~~~~d--~~i~~~Lr----~~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g~  422 (712)
T PRK09518        354 LADAVVFVVDGQVGLTSTD--ERIVRMLR----RAGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHGR  422 (712)
T ss_pred             hCCEEEEEEECCCCCCHHH--HHHHHHHH----hcCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCCC
Confidence            9999999999987532222  12444443    3679999999999985432    111222 12233 46789999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028292          163 NVEQCFEELVLKILD  177 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~  177 (211)
                      |+.+++++|++.+.+
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999998854

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=3.6e-21  Score=149.73  Aligned_cols=152  Identities=20%  Similarity=0.102  Sum_probs=118.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccccccC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSSYYRG   84 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~   84 (211)
                      ..|+++|-||||||||.|||++.+...+..++|.|.+............+.++||+|.+...         ......+.+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999998888888988777766665566679999999955322         334556789


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCC
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVN  163 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  163 (211)
                      +|++|||+|....-+-++-.  +...++    ..++|+++|+||+|..     ..+.....+-.+|+ .++.+||..|.|
T Consensus        84 ADvilfvVD~~~Git~~D~~--ia~~Lr----~~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          84 ADVILFVVDGREGITPADEE--IAKILR----RSKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             CCEEEEEEeCCCCCCHHHHH--HHHHHH----hcCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence            99999999998854433211  333333    4679999999999973     33344445566676 799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028292          164 VEQCFEELVLKIL  176 (211)
Q Consensus       164 v~~~~~~i~~~~~  176 (211)
                      +.++++++++.+.
T Consensus       153 i~dLld~v~~~l~  165 (444)
T COG1160         153 IGDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999999984

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.86  E-value=1.6e-20  Score=138.55  Aligned_cols=178  Identities=17%  Similarity=0.171  Sum_probs=127.5

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc------------c
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER------------F   74 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~   74 (211)
                      +++..+..+|+|+|.||+|||||.|.+.+.+......-+.++.....-.+.....++.|+||||.-.            .
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence            3556789999999999999999999999999977777777777777777777778999999999211            1


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HHHH
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS------------KKEG  142 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~~~  142 (211)
                      -+..+..+..+|++++++|+++....-+..  .+..+..+   ..+|-++|+||.|......+.            ....
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k  220 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK  220 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence            123345567899999999999643322211  23333333   468889999999974321110            0011


Q ss_pred             HHHHHHh-------------CC----cEEEeccCCCCCHHHHHHHHHHHHHcCCCcccCCCCCc
Q 028292          143 IDFAREY-------------GC----LFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGV  189 (211)
Q Consensus       143 ~~~~~~~-------------~~----~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~  189 (211)
                      .++..++             +.    .+|.+||++|+||+++-++|..++....++++.+.-..
T Consensus       221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~  284 (379)
T KOG1423|consen  221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTE  284 (379)
T ss_pred             hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccc
Confidence            1222221             12    38999999999999999999999999999998765443

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=9e-21  Score=156.82  Aligned_cols=144  Identities=19%  Similarity=0.241  Sum_probs=104.5

Q ss_pred             cCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEE--EEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEEE
Q 028292           20 GDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRTL------TSSYY--RGAQGII   89 (211)
Q Consensus        20 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i   89 (211)
                      |.+|||||||+|++++... ...+.+|.+....  .+.+++  ..+++|||||...+...      .+.++  .++|+++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence            8999999999999998775 3334445544443  444444  45889999998776543      23332  4789999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|+|.++.+..   .. +...+.    ..++|+++|+||+|+.+.+.+. .+...+.+..+++++++||++|+|++++++
T Consensus        78 ~VvDat~ler~---l~-l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        78 NVVDASNLERN---LY-LTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             EEecCCcchhh---HH-HHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            99999885432   12 222221    3579999999999986555443 345677888899999999999999999999


Q ss_pred             HHHHHH
Q 028292          170 ELVLKI  175 (211)
Q Consensus       170 ~i~~~~  175 (211)
                      ++.+.+
T Consensus       149 ~i~~~~  154 (591)
T TIGR00437       149 AIRKAI  154 (591)
T ss_pred             HHHHHh
Confidence            998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.85  E-value=1.8e-20  Score=150.69  Aligned_cols=156  Identities=19%  Similarity=0.101  Sum_probs=105.6

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCcceeeeEEEEEEECCe
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALGGK   59 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~   59 (211)
                      ....++|+++|++++|||||+++|+...-.                              ......|.+.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            346799999999999999999999843220                              01113456666666666667


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc---
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV---  136 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---  136 (211)
                      .+.+.||||||++.+.......+..+|++++|+|+++...+......+......   ....|+++++||+|+.....   
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCCCeEEEEEEccccccccHHHH
Confidence            789999999999887665556678999999999998731121111112222222   12246899999999864221   


Q ss_pred             -cCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 028292          137 -VSKKEGIDFAREYG-----CLFLECSAKTRVNVEQCF  168 (211)
Q Consensus       137 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~  168 (211)
                       ...+++.++....+     ++++++||++|+|+++..
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence             12234445555444     479999999999998754

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.85  E-value=1.5e-20  Score=146.75  Aligned_cols=156  Identities=19%  Similarity=0.162  Sum_probs=122.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYY   82 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   82 (211)
                      ..-++|+++|.||||||||+|.|++.+...+.+..|+|++..+..++-.++++.++||+|..+-...        ....+
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999999888888889999999996543321        23346


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV  162 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (211)
                      .++|.+++|+|.+.+.+-.+..-  +.     ....++|+++|.||.|+.........     ....+.+++.+|+++++
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~~--~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~  362 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLAL--IE-----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGE  362 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHHH--HH-----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCcc
Confidence            89999999999999743333322  11     12578999999999999665442211     12223479999999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028292          163 NVEQCFEELVLKILDT  178 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~  178 (211)
                      |++.+.+.|.+.+...
T Consensus       363 Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         363 GLDALREAIKQLFGKG  378 (454)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999999988766

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=4e-20  Score=143.95  Aligned_cols=165  Identities=22%  Similarity=0.158  Sum_probs=125.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------ccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----------TSS   80 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~   80 (211)
                      ..++|+++|.||+|||||+|+|++.......+..|++.+.....++.....+.++||+|-..-...           ...
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            579999999999999999999999998889999999999998888766677889999994432211           122


Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-Hh----CCcEEE
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-EY----GCLFLE  155 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~  155 (211)
                      .+..+|++++|+|++.+-+-++..  +...+.    ..+.++++|+||+|+.+......++...... .+    .++++.
T Consensus       257 aI~~a~vvllviDa~~~~~~qD~~--ia~~i~----~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         257 AIERADVVLLVIDATEGISEQDLR--IAGLIE----EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HHhhcCEEEEEEECCCCchHHHHH--HHHHHH----HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            356789999999999985544432  333333    6789999999999987664344433332222 21    358999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292          156 CSAKTRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       156 ~Sa~~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      +||+++.++..+|+.+.+.........
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri  357 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRI  357 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhcccc
Confidence            999999999999999988876655444

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.2e-21  Score=126.70  Aligned_cols=162  Identities=22%  Similarity=0.312  Sum_probs=126.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +..+|+++|.-|+|||+++.++.-++.....|++|........    ....+++||..|+-..+..|+.++.+.|++|+|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            7899999999999999999999988888888888854443333    667899999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      +|.+|....--....++.++.... ..+.-+++++||.|.....   ++.......-.++.-+.+|+.||.+|+|++..+
T Consensus        93 VDssd~dris~a~~el~~mL~E~e-Lq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEE-LQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHh-hcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            999998766555554555554333 5567788999999974432   111112222233344789999999999999999


Q ss_pred             HHHHHHHHcC
Q 028292          169 EELVLKILDT  178 (211)
Q Consensus       169 ~~i~~~~~~~  178 (211)
                      +|+.+.+.++
T Consensus       172 DWL~~~l~~~  181 (182)
T KOG0072|consen  172 DWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHhcc
Confidence            9999988754

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.84  E-value=2.2e-20  Score=136.42  Aligned_cols=148  Identities=21%  Similarity=0.159  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------------------CCcceeeeEEEEEEECCeEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL------------------------------SPTIGVDFKIKHVALGGKKMKLA   64 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~   64 (211)
                      ||+++|++|+|||||+++|+...-...                              ....|.+.......+.....++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999986432111                              01133444444444545556789


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc----CHH
Q 028292           65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV----SKK  140 (211)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~  140 (211)
                      ||||||+.++.......+..+|++|+|+|++++..-... . .......   ....++++|+||+|+......    ...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~-~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-R-HSYILSL---LGIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-H-HHHHHHH---cCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            999999988766666678899999999999876322211 1 1222222   122457889999998643221    122


Q ss_pred             HHHHHHHHhCC---cEEEeccCCCCCHHHH
Q 028292          141 EGIDFAREYGC---LFLECSAKTRVNVEQC  167 (211)
Q Consensus       141 ~~~~~~~~~~~---~~~~~Sa~~~~~v~~~  167 (211)
                      +...+....+.   +++++||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            34444555553   5899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=2.1e-22  Score=137.87  Aligned_cols=176  Identities=36%  Similarity=0.575  Sum_probs=143.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeE-EEEEEEeCCCcccccccccccccCccE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK-MKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ....++++|+|.-++|||+++.+++...+ ..+..+.|.++.......+... +++.+||+.|++++..+.+.+++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            34568999999999999999999999888 5677788877776666555444 678999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHhCC-cEEEeccCCCC
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLY---STNQDCIKLLVGNKVDKESERVVS-KKEGIDFAREYGC-LFLECSAKTRV  162 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~  162 (211)
                      .++|||+++..+|+.... |.+.+...   .....+|+++.+||||........ .....++.+++++ ..+++|++.+.
T Consensus       102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            999999999999998887 77666533   334568889999999985443322 4667788888887 79999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCcccCCC
Q 028292          163 NVEQCFEELVLKILDTPSLLSEGS  186 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~~~~~~~~  186 (211)
                      ++.+....+++.++-+........
T Consensus       181 ni~Ea~r~lVe~~lvnd~q~~~s~  204 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVNDEQPIKSS  204 (229)
T ss_pred             ChhHHHHHHHHHHHhhccCCcccc
Confidence            999999999999987775444433

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=127.10  Aligned_cols=167  Identities=17%  Similarity=0.202  Sum_probs=123.0

Q ss_pred             CCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------c
Q 028292            3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------Q   71 (211)
Q Consensus         3 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~   71 (211)
                      +.+.+-+.+...-|+++|-+|||||||||+|++.+- ...+.++|.|.....+.+++.   +.++|.||          .
T Consensus        14 ~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~   90 (200)
T COG0218          14 PDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVK   90 (200)
T ss_pred             CCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHH
Confidence            344566777889999999999999999999999775 889999999999999888775   77889999          3


Q ss_pred             cccccccccccc---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--HHHH-HH
Q 028292           72 ERFRTLTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK--KEGI-DF  145 (211)
Q Consensus        72 ~~~~~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~-~~  145 (211)
                      +.+..+...|+.   +..++++++|+..+..-.+.  ..++++.    ..++|++||+||+|.....+...  .... .+
T Consensus        91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~----~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l  164 (200)
T COG0218          91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLL----ELGIPVIVVLTKADKLKKSERNKQLNKVAEEL  164 (200)
T ss_pred             HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence            344455555553   45889999999988554333  1444444    57899999999999865443321  1111 22


Q ss_pred             HHHhCCc--EEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          146 AREYGCL--FLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       146 ~~~~~~~--~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      .......  ++..|+.++.|++++...|.+.+.+.
T Consensus       165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~  199 (200)
T COG0218         165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKEA  199 (200)
T ss_pred             cCCCCccceEEEEecccccCHHHHHHHHHHHhhcc
Confidence            2222222  78899999999999999999887643

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=4.7e-20  Score=148.24  Aligned_cols=156  Identities=19%  Similarity=0.121  Sum_probs=106.2

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCC--CC----------------------------CCCCcceeeeEEEEEEECCe
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FE----------------------------ELSPTIGVDFKIKHVALGGK   59 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~   59 (211)
                      ....++|+++|+.++|||||+.+|+...  ..                            ......|.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            3466999999999999999999998621  11                            01112244555555556666


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADI-WAKEIDLYSTNQDCIKLLVGNKVDKESERV--  136 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--  136 (211)
                      .+.+.|||+||++.|.......+.++|++|+|+|+++.+++...... +......   ....|+++++||+|+.....  
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHH
Confidence            78899999999988876666677899999999999988543211110 1112221   22357899999999954222  


Q ss_pred             --cCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 028292          137 --VSKKEGIDFAREYG-----CLFLECSAKTRVNVEQCF  168 (211)
Q Consensus       137 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~  168 (211)
                        ...+++..++...+     ++++++||++|.|+.+.+
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence              12344555666554     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.83  E-value=2.6e-19  Score=132.67  Aligned_cols=152  Identities=24%  Similarity=0.161  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCcc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYRGAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   86 (211)
                      +|+++|++|+|||||+++|++... ....+....+.....+.+.+  ..+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998764 11112222223333344443  568999999964332       12345688999


Q ss_pred             EEEEEEECCChh-cHHHHHHHH----------------------------------------HHHHHhh-----------
Q 028292           87 GIIMVYDVTRRD-TFTNLADIW----------------------------------------AKEIDLY-----------  114 (211)
Q Consensus        87 ~~ilv~d~~~~~-s~~~~~~~~----------------------------------------~~~~~~~-----------  114 (211)
                      ++++|+|+++++ ..+.+...+                                        ...+..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 232222211                                        1111111           


Q ss_pred             ------------cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          115 ------------STNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       115 ------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                                  .....+|+++|+||+|+.     ..++...++.  ...++++||+++.|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                        112347999999999984     3344444443  24689999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=5.1e-19  Score=121.62  Aligned_cols=155  Identities=21%  Similarity=0.260  Sum_probs=115.6

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCC-------------CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL-------------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (211)
                      .....||+|.|+.++||||+++.+........             ..+...++.....   .....+.+++||||+++.-
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHHHH
Confidence            44678999999999999999999997763100             0112222222222   1235689999999999999


Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh--CCcEE
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY--GCLFL  154 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~  154 (211)
                      +|...+++++++|+++|.+++..+ +... ++..+...   ..+|++|++||.|+....  ..+...+.....  +++++
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi  156 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSR---NPIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVI  156 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhc---cCCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCcee
Confidence            999999999999999999999988 3333 44444432   239999999999996554  445555555544  78999


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028292          155 ECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      +.+|.+++++.+.+..++..
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            99999999999988888766

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=2e-19  Score=147.94  Aligned_cols=156  Identities=19%  Similarity=0.154  Sum_probs=103.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----CCcceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL-----SPTIGVDFKIKHV------------ALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~   74 (211)
                      +..-|+++|++++|||||+++|.+..+...     ..+.|..+.....            .+......+.||||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            345699999999999999999998766221     1222222211110            00011124889999999999


Q ss_pred             cccccccccCccEEEEEEECCC---hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc------------CH
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------SK  139 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------~~  139 (211)
                      ..++..++..+|++++|+|+++   +++++.+.     .+.    ..++|+++++||+|+.+....            ..
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~  153 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQE  153 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhh
Confidence            9988888999999999999997   44444332     222    357899999999998532100            00


Q ss_pred             HH------------HHHHHH------------Hh--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          140 KE------------GIDFAR------------EY--GCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       140 ~~------------~~~~~~------------~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      ..            ..++..            ++  .++++++||++|+|+++++.+|.....
T Consensus       154 ~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       154 IQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence            00            001110            11  358999999999999999999876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=7.3e-19  Score=145.12  Aligned_cols=161  Identities=19%  Similarity=0.206  Sum_probs=117.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh--CCCCC-------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS--DTFEE-------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (211)
                      ...||+++|+.++|||||+++|+.  +.+..             .....|.++......+....+.+++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456999999999999999999997  33311             123456677777777777788999999999999999


Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFARE-------  148 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------  148 (211)
                      .+..+++.+|++|+|+|+.+....+.. . +.....    ..++|+++++||+|+...+. ...+++..+...       
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~-~l~~a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR-F-VTKKAF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH-H-HHHHHH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence            999999999999999999876433222 2 222222    36789999999999865432 112333333322       


Q ss_pred             hCCcEEEeccCCCC----------CHHHHHHHHHHHHHcC
Q 028292          149 YGCLFLECSAKTRV----------NVEQCFEELVLKILDT  178 (211)
Q Consensus       149 ~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~~~~  178 (211)
                      ..++++.+||++|.          ++..+++.|++.+...
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            34689999999998          5888888888777544

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=9.5e-19  Score=126.10  Aligned_cols=146  Identities=16%  Similarity=0.118  Sum_probs=100.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (211)
                      .++|+++|+.++|||||+++|+....               .......|.+.......+.....++.|+||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            48999999999999999999986411               011123455566666666666678999999999888777


Q ss_pred             ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHh----
Q 028292           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREY----  149 (211)
Q Consensus        78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~----  149 (211)
                      ....+..+|++++|+|+...-.-.. .. +...+.    ..++| +++++||+|+......   ..+++..+....    
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~-~~~~~~----~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT-RE-HLLLAR----QVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            7777889999999999987532221 12 222333    35566 7788999998532221   122344444443    


Q ss_pred             -CCcEEEeccCCCCCH
Q 028292          150 -GCLFLECSAKTRVNV  164 (211)
Q Consensus       150 -~~~~~~~Sa~~~~~v  164 (211)
                       +++++++||++|.++
T Consensus       156 ~~v~iipiSa~~g~n~  171 (195)
T cd01884         156 DNTPIVRGSALKALEG  171 (195)
T ss_pred             cCCeEEEeeCccccCC
Confidence             368999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.82  E-value=2.8e-19  Score=142.63  Aligned_cols=162  Identities=16%  Similarity=0.154  Sum_probs=104.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC--cceeeeEEE----E------------EEE----CC------eEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP--TIGVDFKIK----H------------VAL----GG------KKMK   62 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~----~------------~~~----~~------~~~~   62 (211)
                      ...++|+++|+.++|||||+++|.+...+....  ..|.+....    .            ++.    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            356899999999999999999997542211111  011111100    0            000    11      1457


Q ss_pred             EEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHH
Q 028292           63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKK  140 (211)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~  140 (211)
                      +++||+||++.|...+......+|++++|+|+++......... .+..+..   ....|+++++||+|+.+....  ..+
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~  157 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEI---IGIKNIVIVQNKIDLVSKEKALENYE  157 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHH
Confidence            8999999999998888777888999999999996431111111 1222222   223578999999998653321  123


Q ss_pred             HHHHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          141 EGIDFAREY---GCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       141 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      ++..+....   +++++++||++|+|+++++++|...+.
T Consensus       158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            333444332   578999999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=4.5e-19  Score=119.27  Aligned_cols=135  Identities=22%  Similarity=0.270  Sum_probs=97.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc----ccccccccccccCccEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ----ERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~il   90 (211)
                      ||+++|+.|+|||||+++|.+... .+..|....+.            =.++||||.    ..+.........++|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            799999999999999999998765 33333322211            134799992    2233333344568999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~  169 (211)
                      +.|++++.+...-.  +..       ..++|+|-|+||+|+.. ...+.+.+.++.+.-|+ .+|++|+.+|+|++++.+
T Consensus        70 l~dat~~~~~~pP~--fa~-------~f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   70 LQDATEPRSVFPPG--FAS-------MFNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EecCCCCCccCCch--hhc-------ccCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            99999985432111  111       34689999999999863 34467777788888887 689999999999999998


Q ss_pred             HHH
Q 028292          170 ELV  172 (211)
Q Consensus       170 ~i~  172 (211)
                      +|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=6e-19  Score=124.49  Aligned_cols=151  Identities=20%  Similarity=0.200  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRTLTSSYYR   83 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~   83 (211)
                      .|+++|.+|+|||||++.+++... ....++.+.+.....+..+.   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996554 55556666655554444443   789999999432          2222233332


Q ss_pred             ---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH--HhCCcEEEe
Q 028292           84 ---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAR--EYGCLFLEC  156 (211)
Q Consensus        84 ---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~  156 (211)
                         ..+++++++|.....+.....  ....+.    ..+.|+++++||+|+.......  .........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLE----ELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHH--HHHHHH----HcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               457889999998764322211  223333    2358999999999985433211  112222222  234689999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028292          157 SAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~  174 (211)
                      |++++.++.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.81  E-value=4.4e-19  Score=146.53  Aligned_cols=159  Identities=20%  Similarity=0.245  Sum_probs=114.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC--CCCC-------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD--TFEE-------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT   78 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   78 (211)
                      -||+++|+.++|||||+.+|+..  .+..             .....|.++......+....+.++||||||+.+|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            38999999999999999999863  2211             11233555665555555667889999999999999888


Q ss_pred             cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HhC
Q 028292           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-SKKEGIDFAR-------EYG  150 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~  150 (211)
                      ..++..+|++++|+|+++... ..... ++..+.    ..++|+++++||+|+...+.. ...+...+..       ...
T Consensus        82 ~~~l~~aD~alLVVDa~~G~~-~qT~~-~l~~a~----~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~  155 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGPM-PQTRF-VLKKAL----ELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD  155 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCCc-HHHHH-HHHHHH----HCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence            999999999999999987532 22233 333333    357899999999998654321 1233333332       235


Q ss_pred             CcEEEeccCCCC----------CHHHHHHHHHHHHHcC
Q 028292          151 CLFLECSAKTRV----------NVEQCFEELVLKILDT  178 (211)
Q Consensus       151 ~~~~~~Sa~~~~----------~v~~~~~~i~~~~~~~  178 (211)
                      ++++++||++|.          |+..+|+.|++.+...
T Consensus       156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            689999999996          7999999998887544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=8.2e-19  Score=139.90  Aligned_cols=163  Identities=18%  Similarity=0.177  Sum_probs=103.4

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEE----E------------EE----EC--C----eE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIK----H------------VA----LG--G----KK   60 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~----~------------~~----~~--~----~~   60 (211)
                      .....++|+++|+.++|||||+.+|.+...+...  ...|.+....    .            +.    ++  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            3456799999999999999999999653211111  0111111110    0            00    00  0    13


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-  138 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-  138 (211)
                      ..++||||||+..+..........+|++++|+|++++. ..+.... + ..+..   ....|+++|+||+|+.+..... 
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l-~~l~~---~~i~~iiVVlNK~Dl~~~~~~~~  159 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-L-MALDI---IGIKNIVIVQNKIDLVSKERALE  159 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-H-HHHHH---cCCCcEEEEEEeeccccchhHHH
Confidence            57899999999888766656667789999999999653 1221111 2 12221   2234789999999986543221 


Q ss_pred             -HHHHHHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          139 -KKEGIDFAREY---GCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       139 -~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                       .++...+....   +.+++++||++|.|+++++++|...+.
T Consensus       160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence             23333443332   478999999999999999999988764

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=7.9e-19  Score=130.27  Aligned_cols=112  Identities=17%  Similarity=0.176  Sum_probs=81.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCC-----------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFE-----------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (211)
                      +|+++|+.|+|||||+++|+...-.                 ......+.++......+......+++|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            6899999999999999999864210                 00112233344444555556678999999999998888


Q ss_pred             ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      +..+++.+|++++|+|+++..... ... +...+.    ..++|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~-~~~~~~----~~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRI-LWRLLR----KLNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHH-HHHHHH----HcCCCEEEEEECcccc
Confidence            888999999999999999875432 222 333333    3578999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.80  E-value=1.8e-18  Score=142.86  Aligned_cols=156  Identities=21%  Similarity=0.173  Sum_probs=102.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC-----cceeeeEEEEEEE--CCeE-----E-----EEEEEeCCCccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-----TIGVDFKIKHVAL--GGKK-----M-----KLAIWDTAGQER   73 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~g~~~   73 (211)
                      .++..|+++|++++|||||+++|.+.......+     +.|.++.......  .+..     .     .++||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            466789999999999999999998665422211     2222211111000  0111     1     278999999999


Q ss_pred             ccccccccccCccEEEEEEECCC---hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-------------
Q 028292           74 FRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-------------  137 (211)
Q Consensus        74 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------------  137 (211)
                      |..++...+..+|++++|+|+++   +++++.+..     +.    ..++|+++++||+|+.+....             
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~-----~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI-----LK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH-----HH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            99888888899999999999997   555544321     22    357899999999998521110             


Q ss_pred             --CHH--------HHHHHHHHh---------------CCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          138 --SKK--------EGIDFAREY---------------GCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       138 --~~~--------~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                        ...        +........               .++++++||++|+|+++++..+...+
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence              000        011111111               25799999999999999998887544

>PRK12736 elongation factor Tu; Reviewed

Probab=99.79  E-value=3.7e-18  Score=135.75  Aligned_cols=161  Identities=17%  Similarity=0.115  Sum_probs=108.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      ....++|+++|+.++|||||+++|++...               .......|.+.......+......+.|+||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            34679999999999999999999986311               011124455666666666666678899999999888


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHhC
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVS---KKEGIDFAREYG  150 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  150 (211)
                      .......+..+|++++|+|++....-... . +...+.    ..++| +++++||+|+....+..   .+++..+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~-~~~~~~----~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQTR-E-HILLAR----QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhHH-H-HHHHHH----HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            76666667889999999999875322221 2 222333    34677 67889999986433221   224445544444


Q ss_pred             -----CcEEEeccCCCC--------CHHHHHHHHHHHHH
Q 028292          151 -----CLFLECSAKTRV--------NVEQCFEELVLKIL  176 (211)
Q Consensus       151 -----~~~~~~Sa~~~~--------~v~~~~~~i~~~~~  176 (211)
                           ++++++||++|.        ++..+++.+.+.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                 589999999983        46666666666543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.79  E-value=5.7e-19  Score=129.97  Aligned_cols=147  Identities=21%  Similarity=0.173  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCcceeeeEEEEEEECCeEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKKMKLA   64 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (211)
                      +|+++|+.++|||||+.+|+...-                              .......|.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999974211                              01111234455555555555677899


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEECCChhc---H---HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cc
Q 028292           65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE--RV  136 (211)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~  136 (211)
                      +|||||+..+...+...+..+|++|+|+|+++...   |   ..... .......   ...+|+++++||+|+...  ..
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HALLART---LGVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHHHHHH---cCCCeEEEEEEccccccccccH
Confidence            99999988777666677788999999999998521   1   11111 1112221   234789999999998632  11


Q ss_pred             cC----HHHHHHHHHHhC-----CcEEEeccCCCCCHH
Q 028292          137 VS----KKEGIDFAREYG-----CLFLECSAKTRVNVE  165 (211)
Q Consensus       137 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~  165 (211)
                      ..    .+++.......+     ++++++||++|+|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            11    112222333333     579999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.79  E-value=4.6e-18  Score=141.15  Aligned_cols=157  Identities=17%  Similarity=0.167  Sum_probs=103.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCC--CCcceeeeEEE--EEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      +-|+++|+.++|||||+++|++...+..  ....|.+....  .+... ....+.|||+||++.|.......+.++|+++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            3588999999999999999996432111  11123333222  22221 2335899999999988777777788999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC--HHHHHHHHHHhC---CcEEEeccCCCCC
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVS--KKEGIDFAREYG---CLFLECSAKTRVN  163 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~  163 (211)
                      +|+|+++...-+.. + ....+.    ..++| +++|+||+|+.+...+.  .++..++....+   .+++++||++|.|
T Consensus        80 LVVda~eg~~~qT~-e-hl~il~----~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         80 LVVACDDGVMAQTR-E-HLAILQ----LTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEEECCCCCcHHHH-H-HHHHHH----HcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            99999874221111 1 122222    23455 57999999986532221  233444444444   6899999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 028292          164 VEQCFEELVLKILD  177 (211)
Q Consensus       164 v~~~~~~i~~~~~~  177 (211)
                      +++++++|.+....
T Consensus       154 I~~L~~~L~~~~~~  167 (614)
T PRK10512        154 IDALREHLLQLPER  167 (614)
T ss_pred             CHHHHHHHHHhhcc
Confidence            99999999876543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.79  E-value=5.3e-19  Score=140.40  Aligned_cols=174  Identities=25%  Similarity=0.308  Sum_probs=129.0

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ......+||+++|+.|+||||||-+++...+....|..-. .......+....+..+|+|++...+.+.....-++++|+
T Consensus         4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            3445679999999999999999999999998333332221 111123344455668899998766666666677899999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHhC-C-cEEEeccCCCCC
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKE-GIDFAREYG-C-LFLECSAKTRVN  163 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~  163 (211)
                      +.++|+++++.+.+.+..+|++.+++.. ....+|+|+|+||+|......-..+. .......+. + ..++|||++-.+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            9999999999999999999999998764 23579999999999985433322222 333333333 2 579999999999


Q ss_pred             HHHHHHHHHHHHHcCCCcc
Q 028292          164 VEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       164 v~~~~~~i~~~~~~~~~~~  182 (211)
                      +.++|....+++.....-.
T Consensus       163 ~~e~fYyaqKaVihPt~PL  181 (625)
T KOG1707|consen  163 VSELFYYAQKAVIHPTSPL  181 (625)
T ss_pred             hHhhhhhhhheeeccCccc
Confidence            9999999998887665443

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.78  E-value=4.9e-18  Score=135.19  Aligned_cols=147  Identities=17%  Similarity=0.125  Sum_probs=100.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      ..+.++|+++|+.++|||||+++|++...               .......|.+.....+.+......+.||||||++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            45679999999999999999999984310               011123455666666667666778999999999888


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHhC
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKESERVVS---KKEGIDFAREYG  150 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~  150 (211)
                      ..........+|++++|+|+.+....+.. . +...+.    ..++|.+ +++||+|+.+.....   .+++..+....+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e-~l~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQTR-E-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHH----HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            76666667788999999999874322221 1 222232    2456755 689999986533221   234555665554


Q ss_pred             -----CcEEEeccCCCC
Q 028292          151 -----CLFLECSAKTRV  162 (211)
Q Consensus       151 -----~~~~~~Sa~~~~  162 (211)
                           ++++++||.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=3e-18  Score=125.77  Aligned_cols=112  Identities=24%  Similarity=0.297  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------CCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL------------------SPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ   71 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~   71 (211)
                      +|+++|+.++|||||+++|+.......                  ....+.++....+.+     ++..+.+++|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999997543111                  011222222222222     355688999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      ..+......++..+|++|+|+|+.+..++... . +.....    ..++|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~-~~~~~~----~~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-R-LIRHAI----LEGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECcccC
Confidence            98887888888999999999999887665432 2 223222    2458999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=3.3e-18  Score=139.00  Aligned_cols=157  Identities=18%  Similarity=0.192  Sum_probs=117.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccc-c-cC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSY-Y-RG   84 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~-~-~~   84 (211)
                      ..+|+++|.||||||||.|+|++... .....+|.|...++-.+.....+++++|+||--...      ...+.+ . ..
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            45699999999999999999998775 566677777777777666666678999999943322      222233 3 35


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      .|++|-|+|+++.+.-   ....++.+     ..++|+++++|+.|..+.+.+.. +..++.+..|+|+++++|++|+|+
T Consensus        82 ~D~ivnVvDAtnLeRn---LyltlQLl-----E~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          82 PDLIVNVVDATNLERN---LYLTLQLL-----ELGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCEEEEEcccchHHHH---HHHHHHHH-----HcCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCH
Confidence            6999999999986432   22122222     47899999999999866554433 345678889999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028292          165 EQCFEELVLKILDTP  179 (211)
Q Consensus       165 ~~~~~~i~~~~~~~~  179 (211)
                      +++...+.+....+.
T Consensus       153 ~~l~~~i~~~~~~~~  167 (653)
T COG0370         153 EELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHHhccccc
Confidence            999999988766555

>PRK12735 elongation factor Tu; Reviewed

Probab=99.78  E-value=9.2e-18  Score=133.55  Aligned_cols=160  Identities=15%  Similarity=0.116  Sum_probs=107.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC-------CC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD-------TF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      ..+.++|+++|++++|||||+++|++.       .+        .......|.+.......+.....++.|+||||+..|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            356799999999999999999999862       10        111123455555555666566678899999999888


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHHhC
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---SKKEGIDFAREYG  150 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~  150 (211)
                      .......+..+|++++|+|+.+....+. .. +...+.    ..++|.+ +++||+|+.+..+.   ...++..+...++
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e-~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            7666677789999999999987532221 12 222232    3567865 57999998643221   1224445555443


Q ss_pred             -----CcEEEeccCCCC----------CHHHHHHHHHHHH
Q 028292          151 -----CLFLECSAKTRV----------NVEQCFEELVLKI  175 (211)
Q Consensus       151 -----~~~~~~Sa~~~~----------~v~~~~~~i~~~~  175 (211)
                           ++++++||.++.          ++..+++.|.+.+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence                 679999999984          5666666666553

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.78  E-value=5.4e-18  Score=125.90  Aligned_cols=156  Identities=19%  Similarity=0.206  Sum_probs=107.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeE-EEEEEEeCCCccccc----c---cccccccCc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK-MKLAIWDTAGQERFR----T---LTSSYYRGA   85 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~----~---~~~~~~~~~   85 (211)
                      -.|.++|.||+|||||++++.+.+. ...+...+|.+...-++.... .++.+-|+||.-+-.    .   ..-..+..+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            3688999999999999999999875 444444444444443333222 238889999943222    1   222335678


Q ss_pred             cEEEEEEECCCh---hcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCC
Q 028292           86 QGIIMVYDVTRR---DTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKT  160 (211)
Q Consensus        86 d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (211)
                      +.+++|+|++..   ..|+.+.. +...+..+. ...+.|.++|+||+|+++..   ...+.++.....- .++++||+.
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence            999999999998   77777776 444554443 25679999999999985221   1122344444443 499999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVLK  174 (211)
Q Consensus       161 ~~~v~~~~~~i~~~  174 (211)
                      +++++++++.|.+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999998887653

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=5.8e-18  Score=126.55  Aligned_cols=161  Identities=20%  Similarity=0.160  Sum_probs=114.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--cc-------ccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FR-------TLTSSYY   82 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~-------~~~~~~~   82 (211)
                      ....|+|.|.||||||||++.+++.+. +..+.+.++.......++....+++++||||.-+  ..       +.....-
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            457899999999999999999999885 6667777767777777777778899999999321  11       1111111


Q ss_pred             cCccEEEEEEECCCh--hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccC
Q 028292           83 RGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAK  159 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (211)
                      +-.++++|++|.+.-  .+.+.... ++..+..   ..+.|+++|+||.|......+..  +.......+ .....+++.
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~---~f~~p~v~V~nK~D~~~~e~~~~--~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQIS-LLEEIKE---LFKAPIVVVINKIDIADEEKLEE--IEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHH-HHHHHHH---hcCCCeEEEEecccccchhHHHH--HHHHHHhhccccccceeee
Confidence            335788999999753  56677666 4555554   34599999999999865544333  333344444 457889999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q 028292          160 TRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~  179 (211)
                      .+.+++.....+...+.+..
T Consensus       320 ~~~~~d~~~~~v~~~a~~~~  339 (346)
T COG1084         320 KGCGLDKLREEVRKTALEPL  339 (346)
T ss_pred             ehhhHHHHHHHHHHHhhchh
Confidence            99999988888887765543

>CHL00071 tufA elongation factor Tu

Probab=99.76  E-value=2e-17  Score=132.17  Aligned_cols=149  Identities=15%  Similarity=0.111  Sum_probs=101.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      ....++|+++|++++|||||+++|++...               .......|.+.......+.....++.|+||||+..+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            45679999999999999999999997421               111122455555555556556678899999999887


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHhC
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVS---KKEGIDFAREYG  150 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  150 (211)
                      .......+..+|++++|+|+.....-+. .. ....+.    ..++| +++++||+|+.+.....   ..++..+....+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~-~~~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQT-KE-HILLAK----QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            7666677789999999999987532221 12 222232    35678 67889999986533211   224444544433


Q ss_pred             -----CcEEEeccCCCCCH
Q 028292          151 -----CLFLECSAKTRVNV  164 (211)
Q Consensus       151 -----~~~~~~Sa~~~~~v  164 (211)
                           ++++++||.+|.++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence                 68999999998743

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.76  E-value=2.3e-17  Score=121.42  Aligned_cols=152  Identities=16%  Similarity=0.114  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCC-----------------C-------cceeeeEEEE-------------EEEC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELS-----------------P-------TIGVDFKIKH-------------VALG   57 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----------------~-------~~~~~~~~~~-------------~~~~   57 (211)
                      ||+++|+.++|||||+.+|..+.+....                 .       ..|.+.....             -.+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999976542100                 0       0111100000             0111


Q ss_pred             CeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           58 GKKMKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      .....++++||||++.+.......+.  .+|++++|+|+.....-.. .. +...+.    ..++|+++|+||+|+.+..
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~-~l~~l~----~~~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KE-HLGLAL----ALNIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCEEEEEECccccCHH
Confidence            22457899999999888654444443  6899999999987643222 11 333333    4568999999999985432


Q ss_pred             ccC--HHHHHHHHH--------------------------HhCCcEEEeccCCCCCHHHHHHHHH
Q 028292          136 VVS--KKEGIDFAR--------------------------EYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus       136 ~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      ...  ..++.++..                          ...+++|.+|+.+|+|++++...|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            221  112222221                          1124899999999999999887764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.75  E-value=2.5e-17  Score=119.33  Aligned_cols=159  Identities=19%  Similarity=0.189  Sum_probs=96.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccee---eeEEEEEEECCeEEEEEEEeCCCccccccc-----cccccc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGV---DFKIKHVALGGKKMKLAIWDTAGQERFRTL-----TSSYYR   83 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~   83 (211)
                      +++|+++|.+|+|||||+|.|++... .......+.   +.....+... ....+.+||+||.......     ....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            47999999999999999999998654 222222221   1111111111 1236899999996432221     122357


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHHHH----HH
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-----------VSKKEGIDFA----RE  148 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~----~~  148 (211)
                      ++|+++++.+.    .|......+...+..    .+.|+++|+||+|+.....           ...++..+.+    ..
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  151 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE  151 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHH----hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence            78998887432    233333335555554    3689999999999843211           0111111111    12


Q ss_pred             hC---CcEEEeccC--CCCCHHHHHHHHHHHHHcCCC
Q 028292          149 YG---CLFLECSAK--TRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       149 ~~---~~~~~~Sa~--~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      .+   .++|.+|+.  .+.++..+.+.|...+.+.+.
T Consensus       152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            22   368999998  578999999999999886543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG2262 HflX GTPases [General function prediction only]

Probab=99.75  E-value=5.7e-17  Score=124.75  Aligned_cols=160  Identities=19%  Similarity=0.161  Sum_probs=111.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSS   80 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   80 (211)
                      .....|.++|.+|+|||||+|+|++... .........+.+...+.+.+ ...+.+.||-|.-+         |.++...
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            4667899999999999999999997665 23333333344455555554 44678889999321         2222222


Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                       ..++|.++.|+|+++|...+.+.. ....+.... ..++|+++|.||.|+.....     .........-..+.+||++
T Consensus       269 -~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~-~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~  340 (411)
T COG2262         269 -VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIG-ADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT  340 (411)
T ss_pred             -hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcC-CCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence             468999999999999966666555 556665554 46699999999999754433     1111222111588899999


Q ss_pred             CCCHHHHHHHHHHHHHcCC
Q 028292          161 RVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~~~  179 (211)
                      |.|++.+...|...+....
T Consensus       341 ~~gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         341 GEGLDLLRERIIELLSGLR  359 (411)
T ss_pred             CcCHHHHHHHHHHHhhhcc
Confidence            9999999999999887543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.74  E-value=3.2e-17  Score=120.11  Aligned_cols=168  Identities=19%  Similarity=0.227  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----cccccccCccEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRT-----LTSSYYRGAQGI   88 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~~   88 (211)
                      ||+++|+.++||||+.+.+.....+......+.+.......+ ....+.+++||+||+..+..     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            799999999999999999997765444455555554444444 23456899999999865533     356678999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHh-hcCCCCCcEEEEEeCCCCCCCcc--c----CHHHHHHHHHHhC---CcEEEecc
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDL-YSTNQDCIKLLVGNKVDKESERV--V----SKKEGIDFAREYG---CLFLECSA  158 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~--~----~~~~~~~~~~~~~---~~~~~~Sa  158 (211)
                      |+|+|+.+.+..+.+.. +...+.. ....+++.+.+.++|+|+.....  .    ..+.+.+.....+   +.++.+|.
T Consensus        81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            99999996554444444 4444432 22268899999999999854321  1    1223334444555   77898888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCcccC
Q 028292          159 KTRVNVEQCFEELVLKILDTPSLLSE  184 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~~~~~~~~~~~  184 (211)
                      .+ +.+-+.|..+++.+..+.....+
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP~~~~le~  184 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIPNLSTLEN  184 (232)
T ss_dssp             TS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred             cC-cHHHHHHHHHHHHHcccHHHHHH
Confidence            88 68999999999988766554433

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.74  E-value=4.2e-17  Score=132.10  Aligned_cols=154  Identities=21%  Similarity=0.152  Sum_probs=98.8

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CC------------CCC------------------cceeeeEEEEEEE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE------------LSP------------------TIGVDFKIKHVAL   56 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~------------~~~------------------~~~~~~~~~~~~~   56 (211)
                      .....++|+++|+.++|||||+.+|+...-  ..            ...                  ..|.+.......+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            346779999999999999999999986432  10            000                  1122334444444


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292           57 GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV  136 (211)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (211)
                      .....++.|+||||++.|.......+..+|++++|+|+.....-.....  .......   ...|+++++||+|+.....
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~--~~l~~~l---g~~~iIvvvNKiD~~~~~~  177 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH--SFIATLL---GIKHLVVAVNKMDLVDYSE  177 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH--HHHHHHh---CCCceEEEEEeeccccchh
Confidence            5556789999999998886655556789999999999986532111111  1112221   2257899999999864322


Q ss_pred             cCHHHH----HHHHHHh----CCcEEEeccCCCCCHHHH
Q 028292          137 VSKKEG----IDFAREY----GCLFLECSAKTRVNVEQC  167 (211)
Q Consensus       137 ~~~~~~----~~~~~~~----~~~~~~~Sa~~~~~v~~~  167 (211)
                      ...++.    ..+....    ..+++++||++|+|+.++
T Consensus       178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            112222    2222332    368999999999999764

>cd01850 CDC_Septin CDC/Septin

Probab=99.73  E-value=2.9e-16  Score=119.04  Aligned_cols=143  Identities=17%  Similarity=0.233  Sum_probs=93.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-----
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-----   75 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----   75 (211)
                      -.++|+|+|.+|+|||||+|+|++..+..           ..++.........+..++..+.+.+|||||.....     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            35899999999999999999999887622           23344444555566667778899999999932110     


Q ss_pred             ---------------------cccccccc--CccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           76 ---------------------TLTSSYYR--GAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        76 ---------------------~~~~~~~~--~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                                           ..+...+.  .+|+++++++.+... .-.+ .. ++..+   .  ..+|+++|+||+|+
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~-~lk~l---~--~~v~vi~VinK~D~  155 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IE-FMKRL---S--KRVNIIPVIAKADT  155 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HH-HHHHH---h--ccCCEEEEEECCCc
Confidence                                 01112233  467888888876521 1111 11 23333   2  36899999999998


Q ss_pred             CCCc--ccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292          132 ESER--VVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      ....  ....+...+.+..+++.+|..+....
T Consensus       156 l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~~  187 (276)
T cd01850         156 LTPEELKEFKQRIMEDIEEHNIKIYKFPEDEE  187 (276)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence            5532  23455566778888999998776443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=7.7e-17  Score=121.59  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=81.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC--CCC---------C----------CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EEL---------S----------PTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~--~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (211)
                      -+|+++|++|+|||||+++|+...-  ...         .          ...+.++......++...+.+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            4799999999999999999985321  100         0          011334445555666677889999999998


Q ss_pred             cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      ++.......++.+|++|+|+|+++..... ... +.....    ..++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~-i~~~~~----~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRK-LFEVCR----LRGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHH-HHHHHH----hcCCCEEEEEECCccCCC
Confidence            88776777789999999999998763321 122 222222    357899999999998554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.73  E-value=1.7e-16  Score=128.13  Aligned_cols=148  Identities=15%  Similarity=0.096  Sum_probs=100.4

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      ....++|+++|++++|||||+++|++...               .......|.+.......+......+.|+|+||++.|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            45679999999999999999999996211               111223444555555555555668899999999988


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHh-
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREY-  149 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-  149 (211)
                      .......+..+|++++|+|+.+...-+. .. +...+.    ..++| +++++||+|+.+....   ..+++..+.... 
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e-~~~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KE-HILLAK----QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            7777777789999999999987643222 22 222333    35677 7788999998653222   112344444443 


Q ss_pred             ----CCcEEEeccCCCCC
Q 028292          150 ----GCLFLECSAKTRVN  163 (211)
Q Consensus       150 ----~~~~~~~Sa~~~~~  163 (211)
                          +++++++|+.++.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                46899999988853

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.73  E-value=3.9e-17  Score=130.30  Aligned_cols=148  Identities=22%  Similarity=0.185  Sum_probs=95.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC--CC------------------------------CCCcceeeeEEEEEEECCeEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EE------------------------------LSPTIGVDFKIKHVALGGKKM   61 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      +||+++|+.++|||||+.+|+...-  ..                              .....|.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999974321  00                              001112334444444445566


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--
Q 028292           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK--  139 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--  139 (211)
                      ++.|+||||++.|.......+..+|++++|+|+.....-+...  ....+..   ....++++++||+|+........  
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~~~~~---~~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSYIASL---LGIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHHHHHH---cCCCcEEEEEEecccccchHHHHHH
Confidence            8999999999888766666788999999999998753222111  1122222   12346889999999864322111  


Q ss_pred             --HHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 028292          140 --KEGIDFAREYG---CLFLECSAKTRVNVEQ  166 (211)
Q Consensus       140 --~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  166 (211)
                        ++...+....+   ++++++||++|+|+.+
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              12222333333   4799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.1e-17  Score=112.82  Aligned_cols=156  Identities=20%  Similarity=0.258  Sum_probs=116.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +.=|++++|--|+|||||++.|.......+.||...+.....+    .+..++-+|.+|+..-+..|..++..+|++|+.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            4458999999999999999999998887777776654443333    445678889999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH---HHHHHh-----------C---CcEE
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI---DFAREY-----------G---CLFL  154 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~---~~~~~~-----------~---~~~~  154 (211)
                      +|+-|.+.|.+.+..+...+.. .....+|+++.+||.|.+.+.  ..++..   .+.+..           +   +.+|
T Consensus        95 vda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            9999999998887744444433 225789999999999986554  333322   111111           1   2468


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028292          155 ECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      -||...+.+-.+.|.|+.+.
T Consensus       172 mcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEccCccceeeeehhhh
Confidence            88888888877777777654

>PLN03127 Elongation factor Tu; Provisional

Probab=99.73  E-value=2.7e-16  Score=126.36  Aligned_cols=161  Identities=17%  Similarity=0.089  Sum_probs=104.4

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC------CC---------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD------TF---------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      ....++|+++|+.++|||||+++|.+.      ..         .......|.+.......+.....++.|+||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            446799999999999999999999732      10         111223455666666777667778999999999887


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccCH---HHHHHHHHHh-
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVSK---KEGIDFAREY-  149 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~-  149 (211)
                      -......+..+|++++|+|+++...-+. .. ....+.    ..++| +++++||+|+.+......   .+..++.... 
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e-~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KE-HILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            6655556678999999999987532222 12 222232    35688 478899999864322111   1222333222 


Q ss_pred             ----CCcEEEeccC---CCCC-------HHHHHHHHHHHHH
Q 028292          150 ----GCLFLECSAK---TRVN-------VEQCFEELVLKIL  176 (211)
Q Consensus       150 ----~~~~~~~Sa~---~~~~-------v~~~~~~i~~~~~  176 (211)
                          .++++++|+.   ++.|       +..+++.+.+.+.
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence                3678888875   4544       5666666666543

>PRK00049 elongation factor Tu; Reviewed

Probab=99.73  E-value=3e-16  Score=124.91  Aligned_cols=146  Identities=16%  Similarity=0.125  Sum_probs=98.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (211)
                      ...++|+++|+.++|||||+++|++...               .......|.+.......+.....++.|+||||+..|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            4679999999999999999999987311               0111234555666666665566788999999998887


Q ss_pred             ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHh--
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKESERVVS---KKEGIDFAREY--  149 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~--  149 (211)
                      ......+..+|++++|+|+.....-.. .. +...+.    ..++|++ +++||+|+.......   ..++..+....  
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~qt-~~-~~~~~~----~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchHH-HH-HHHHHH----HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            666677889999999999987532221 12 223333    3568876 579999986422211   12333343332  


Q ss_pred             ---CCcEEEeccCCCC
Q 028292          150 ---GCLFLECSAKTRV  162 (211)
Q Consensus       150 ---~~~~~~~Sa~~~~  162 (211)
                         +++++++||+++.
T Consensus       164 ~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        164 PGDDTPIIRGSALKAL  179 (396)
T ss_pred             CccCCcEEEeeccccc
Confidence               3689999999875

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.72  E-value=7.8e-17  Score=129.57  Aligned_cols=151  Identities=17%  Similarity=0.145  Sum_probs=104.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCcceeeeEEEEEEECCe
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E----------------------------ELSPTIGVDFKIKHVALGGK   59 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~   59 (211)
                      ....++|+++|+.++|||||+.+|+...-  .                            ......|.+.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            34679999999999999999999974211  0                            11112244455555556667


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHH-------HHHHHHHHHHHhhcCCCCC-cEEEEEeCCCC
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLADIWAKEIDLYSTNQDC-IKLLVGNKVDK  131 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~  131 (211)
                      ...++|+|+||+++|.......+..+|++|+|+|+++. .|+       .... ......    ..++ ++++++||+|+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~----~~gi~~iIV~vNKmD~  157 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAF----TLGVKQMICCCNKMDA  157 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHH----HcCCCcEEEEEEcccC
Confidence            78899999999999998888889999999999999873 222       2222 222222    3456 46888999997


Q ss_pred             CCCc------ccCHHHHHHHHHHhC-----CcEEEeccCCCCCHHH
Q 028292          132 ESER------VVSKKEGIDFAREYG-----CLFLECSAKTRVNVEQ  166 (211)
Q Consensus       132 ~~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  166 (211)
                      ....      ....+++..++...+     ++++++||.+|+|+.+
T Consensus       158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            5211      111345556666655     5799999999999853

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.72  E-value=6.9e-17  Score=131.98  Aligned_cols=117  Identities=17%  Similarity=0.181  Sum_probs=82.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------------CCCcceeeeEEEEEEECCeEEEEEEEeC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE-------------------LSPTIGVDFKIKHVALGGKKMKLAIWDT   68 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   68 (211)
                      ..+..+|+++|++++|||||+++|+...  ...                   .....|.++......+....+.+++|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            3567799999999999999999997421  100                   0011133344444455556678999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        69 ~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      ||+.++.......+..+|++|+|+|+++..... ... +.....    ..++|+++++||+|+.
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~-l~~~~~----~~~iPiiv~iNK~D~~  144 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRK-LMEVCR----LRDTPIFTFINKLDRD  144 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHH-HHHHHH----hcCCCEEEEEECCccc
Confidence            999988877777889999999999998763221 222 222222    4689999999999974

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=2e-16  Score=116.00  Aligned_cols=112  Identities=20%  Similarity=0.240  Sum_probs=78.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--CCCC-------------CcceeeeE--EEEEEEC--------CeEEEEEEEeCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF--EELS-------------PTIGVDFK--IKHVALG--------GKKMKLAIWDTA   69 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~--~~~~-------------~~~~~~~~--~~~~~~~--------~~~~~~~i~D~~   69 (211)
                      +|+++|+.++|||||+.+|+....  ....             ...|.+..  ...+.+.        +..+.++|||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999986432  0000             01111111  1122232        347889999999


Q ss_pred             CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      |+..|.......+..+|++++|+|+.+..+.+.... +.. ..    ..++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~-~~----~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQ-AL----KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHH-HH----HcCCCEEEEEECCCcc
Confidence            999999888899999999999999998765544222 222 22    3468999999999974

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.72  E-value=1.9e-16  Score=118.99  Aligned_cols=164  Identities=18%  Similarity=0.152  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCcc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYRGAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   86 (211)
                      -|.++|.||+||||||+.+.+.+. ...+|.+......-.+.+ ...-.+.+-|+||.-+-.       .....++..+-
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            477899999999999999998875 222233322222223333 233357888999943221       11223456788


Q ss_pred             EEEEEEECCChhc---HHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEE-EeccCCC
Q 028292           87 GIIMVYDVTRRDT---FTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFL-ECSAKTR  161 (211)
Q Consensus        87 ~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~  161 (211)
                      +++.|+|++..+.   .++... +...+..|. ...++|.+||+||+|+....+........+....+...+ ++||.++
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            9999999986542   444444 556666553 357899999999999755554444445555555554322 2999999


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 028292          162 VNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~~~  180 (211)
                      +|++++...+.+.+.+...
T Consensus       319 ~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         319 EGLDELLRALAELLEETKA  337 (369)
T ss_pred             cCHHHHHHHHHHHHHHhhh
Confidence            9999999999999887753

>PRK13351 elongation factor G; Reviewed

Probab=99.71  E-value=9.3e-17  Score=136.19  Aligned_cols=119  Identities=18%  Similarity=0.220  Sum_probs=84.7

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----CCCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----EELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      +.+...||+|+|+.++|||||+++|+...-     ....            ...+.+.......+......+++|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            344678999999999999999999985321     0000            01122233323333445678999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .++...+..+++.+|++|+|+|+++..+...... |. .+.    ..++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WR-QAD----RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----hcCCCEEEEEECCCCCC
Confidence            9888888889999999999999998766654332 32 222    35789999999999853

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=4.6e-17  Score=127.34  Aligned_cols=167  Identities=19%  Similarity=0.186  Sum_probs=117.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSSYY   82 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   82 (211)
                      ..++|+++|.||||||||+|.|.+.+...+.|..|++.+..+..++-.++++.+.||+|..+..         ......+
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~  346 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI  346 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence            4589999999999999999999999999999999999999998888888899999999965511         1123346


Q ss_pred             cCccEEEEEEECCCh--hcHHHHHHHHHHHHHhhc-----CCCCCcEEEEEeCCCCCCC-cccCHHHHHHHHHHhC---C
Q 028292           83 RGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYS-----TNQDCIKLLVGNKVDKESE-RVVSKKEGIDFAREYG---C  151 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~-----~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~---~  151 (211)
                      ..+|++++|+|+...  ++...+.. .+.....-.     .....|++++.||.|+..+ ......... +....+   .
T Consensus       347 ~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~~~~~~  424 (531)
T KOG1191|consen  347 ERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAEGRSVF  424 (531)
T ss_pred             hhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccccCccc
Confidence            789999999999433  33223222 222222111     1134789999999999654 221111111 111111   3


Q ss_pred             c-EEEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          152 L-FLECSAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       152 ~-~~~~Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      + ..++|+++++|++++.+.+++.+.....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            3 4559999999999999999998875433

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=1.9e-16  Score=119.55  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=80.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC--C---------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF--E---------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (211)
                      ||+++|++++|||||+++|+...-  .               ......|.+.......+.....++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            689999999999999999974211  0               01122344444444444455678999999999888888


Q ss_pred             ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      +...++.+|++|+|+|+.+...-.. .. +.....    ..++|+++++||+|+...
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~-~~~~~~----~~~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ET-VWRQAD----RYNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HH-HHHHHH----HcCCCEEEEEECCCCCCC
Confidence            8888999999999999987643222 11 222222    467899999999998643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=8.5e-16  Score=121.89  Aligned_cols=158  Identities=21%  Similarity=0.202  Sum_probs=111.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEE--EEECC-eEEEEEEEeCCCcccccccccccccCccE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKH--VALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      .++.=|.++|+...|||||+-.+-....... ..-|.+.+.-.  +..+. ....++|+|||||+.|..++.....-+|+
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~-EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccc-cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            3556789999999999999999987776221 22233333333  33321 23578999999999999999998899999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC---------CcEEEecc
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG---------CLFLECSA  158 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa  158 (211)
                      +|||+++++.-.-+....     +. +....++|++|++||+|..+.+   .........+++         ..++++||
T Consensus        82 aILVVa~dDGv~pQTiEA-----I~-hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA  152 (509)
T COG0532          82 AILVVAADDGVMPQTIEA-----IN-HAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSA  152 (509)
T ss_pred             EEEEEEccCCcchhHHHH-----HH-HHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence            999999998633322221     11 1126899999999999986433   222222233333         46899999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028292          159 KTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ++|+|+.+++..++-...-.
T Consensus       153 ~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         153 KTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             cCCCCHHHHHHHHHHHHHHH
Confidence            99999999999988776554

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.70  E-value=3.3e-16  Score=126.02  Aligned_cols=151  Identities=19%  Similarity=0.131  Sum_probs=100.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCcceeeeEEEEEEECCeE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--E----------------------------ELSPTIGVDFKIKHVALGGKK   60 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~   60 (211)
                      ...++|+++|+.++|||||+.+|+...-  .                            ......|.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            4668999999999999999999986211  0                            111122445555555566677


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhc---H---HHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKES  133 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  133 (211)
                      ..++|+|+||+.+|.......+..+|++++|+|++....   |   ..... ....+.    ..++| +|+++||+|...
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~~----~~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLAF----TLGVKQMIVCINKMDDKT  159 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence            889999999999998888888899999999999987521   1   11222 222222    35666 678999999532


Q ss_pred             --Cc----ccCHHHHHHHHHHh-----CCcEEEeccCCCCCHHH
Q 028292          134 --ER----VVSKKEGIDFAREY-----GCLFLECSAKTRVNVEQ  166 (211)
Q Consensus       134 --~~----~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~  166 (211)
                        ..    ....+++..+....     +++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              11    11122333333333     36799999999999864

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.70  E-value=1.1e-15  Score=110.76  Aligned_cols=162  Identities=12%  Similarity=0.122  Sum_probs=99.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCC---CcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-----------LTS   79 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   79 (211)
                      ++|+++|.+|+|||||+|.+++.+.....   +....+.......+.  ...+.++||||......           .+.
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987652211   111222222333333  34689999999443211           112


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHhCCc
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERVVS------KKEGIDFAREYGCL  152 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  152 (211)
                      ....+.|++++|+++.+. +-.+. . .+..+... ....-.++++++|+.|......+.      ....+.+....+-.
T Consensus        79 ~~~~g~~~illVi~~~~~-t~~d~-~-~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r  155 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRF-TEEEE-Q-AVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR  155 (196)
T ss_pred             hcCCCCEEEEEEEECCCc-CHHHH-H-HHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence            234678999999999872 22221 1 23333222 212235788999999975433211      13444555565655


Q ss_pred             EEEec-----cCCCCCHHHHHHHHHHHHHcCCC
Q 028292          153 FLECS-----AKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       153 ~~~~S-----a~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      ++..+     +..+.+++++++.|.+.+.++..
T Consensus       156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~  188 (196)
T cd01852         156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENGG  188 (196)
T ss_pred             EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence            54554     45677999999999999987433

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=2.8e-16  Score=119.23  Aligned_cols=152  Identities=21%  Similarity=0.243  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCC--C---CC--Cc----------ceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFE--E---LS--PT----------IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~--~---~~--~~----------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (211)
                      +|+++|++|+|||||+++|+.....  .   ..  .+          .+.+.......+....+.+++|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999853210  0   00  00          011222222233334567899999999888777


Q ss_pred             ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcE--EE
Q 028292           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLF--LE  155 (211)
Q Consensus        78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~  155 (211)
                      +...+..+|++++|+|+++......... |. .+.    ..++|+++++||+|......  .+....+...++.++  +.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~-~~~----~~~~p~iivvNK~D~~~~~~--~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKL-WE-FAD----EAGIPRIIFINKMDRERADF--DKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEECCccCCCCH--HHHHHHHHHHhCCCeEEEE
Confidence            8888899999999999998755433222 22 222    35789999999999865421  222233334445443  44


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 028292          156 CSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       156 ~Sa~~~~~v~~~~~~i~~~  174 (211)
                      ++..++.++..+.+.+...
T Consensus       153 ip~~~~~~~~~~vd~~~~~  171 (268)
T cd04170         153 LPIGEGDDFKGVVDLLTEK  171 (268)
T ss_pred             ecccCCCceeEEEEcccCE
Confidence            4566666655554444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.69  E-value=1.6e-15  Score=113.37  Aligned_cols=158  Identities=23%  Similarity=0.121  Sum_probs=105.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccccccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYR   83 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~   83 (211)
                      +.--+|+++|+|++|||||++.|++.+. +......++.....-.....+.++++.|+||.-.       .....-...+
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            3557899999999999999999999875 3334444444444444444556788899998322       1234556789


Q ss_pred             CccEEEEEEECCChhc-HHHHHHHH----------------------------------------HHHHHhhc-------
Q 028292           84 GAQGIIMVYDVTRRDT-FTNLADIW----------------------------------------AKEIDLYS-------  115 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~~-------  115 (211)
                      +||.+++|+|+....+ .+.+...+                                        ...+..+.       
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999986544 22222111                                        11111111       


Q ss_pred             ----------------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          116 ----------------TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       116 ----------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                                      ...-+|.++|.||.|+..     .++...+.+..  .++.+||+.+.|++++.+.|.+.+.
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                            112478899999999844     23333333332  8899999999999999999988874

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.69  E-value=2.1e-16  Score=132.75  Aligned_cols=153  Identities=21%  Similarity=0.156  Sum_probs=97.5

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCC--------------CC------------------cceeeeEEEEEEE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--------------SP------------------TIGVDFKIKHVAL   56 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------------~~------------------~~~~~~~~~~~~~   56 (211)
                      .....++|+++|++++|||||+++|+...-...              ..                  ..|.+.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            344568999999999999999999996432111              00                  0122333333344


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292           57 GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV  136 (211)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (211)
                      .....++.|+||||++.+.......+..+|++++|+|+.....-+...  ....+...   ...+++|++||+|+.....
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~---~~~~iivvvNK~D~~~~~~  174 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLL---GIRHVVLAVNKMDLVDYDQ  174 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHh---CCCeEEEEEEecccccchh
Confidence            445567889999999887665556688999999999997653221111  11222221   2367889999999854221


Q ss_pred             cCH----HHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 028292          137 VSK----KEGIDFAREYG---CLFLECSAKTRVNVEQ  166 (211)
Q Consensus       137 ~~~----~~~~~~~~~~~---~~~~~~Sa~~~~~v~~  166 (211)
                      ...    .+...+....+   ++++++||++|.|+.+
T Consensus       175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111    12223334444   4699999999999874

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=3.2e-16  Score=104.11  Aligned_cols=105  Identities=25%  Similarity=0.259  Sum_probs=68.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERF---------RTLTSSYYR   83 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   83 (211)
                      +|+|+|.+|+|||||+|+|++..........+++..  ...+.+++..  +.++||||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998654333333333322  2444556655  468999994321         111222348


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                      .+|++++|+|.+++.. +.... +...+     ..++|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~-~~~~l-----~~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKN-ILREL-----KNKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHH-HHHHH-----HTTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHH-HHHHH-----hcCCCEEEEEcC
Confidence            8999999999887422 12222 33333     278999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.8e-15  Score=119.78  Aligned_cols=168  Identities=20%  Similarity=0.216  Sum_probs=122.4

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--C------------CCCCcceeeeEEEEE---EECCeEEEEEEEeCCCc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E------------ELSPTIGVDFKIKHV---ALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~------------~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~g~   71 (211)
                      +.++.-|+.|+-+...|||||.-+|+...-  +            ......|.++....-   ..++..+.++++||||+
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            446777999999999999999999985321  1            111223433333322   22356699999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH-HHHHHHHHhC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK-EGIDFAREYG  150 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~  150 (211)
                      .+|.......+.-++++|+|+|++..-.-+.+.. ++..+     ..+..+|.|+||+|++..+.-..+ +..+++...+
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~an-f~lAf-----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~  209 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVAN-FYLAF-----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP  209 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHH-HHHHH-----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999877777666 33333     256778999999999776543322 2333333334


Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292          151 CLFLECSAKTRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       151 ~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      .+++.+||++|.|+++++..|++.+.......
T Consensus       210 ~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~  241 (650)
T KOG0462|consen  210 AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIR  241 (650)
T ss_pred             cceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence            57899999999999999999999887554433

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=1.8e-15  Score=116.37  Aligned_cols=163  Identities=18%  Similarity=0.241  Sum_probs=98.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCC--C-----CCCcceeeeEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTFE--E-----LSPTIGVDFKIKH---------------VALGG-KKMKLAIWDTAGQ-   71 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~--~-----~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~-   71 (211)
                      |+++|.++||||||+++|++....  .     ..|+.|..+....               ..+++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987651  1     1222222211100               00122 3467999999996 


Q ss_pred             ---ccccccccc---cccCccEEEEEEECCC---------------h-hcHHHHHHHHHH--------------------
Q 028292           72 ---ERFRTLTSS---YYRGAQGIIMVYDVTR---------------R-DTFTNLADIWAK--------------------  109 (211)
Q Consensus        72 ---~~~~~~~~~---~~~~~d~~ilv~d~~~---------------~-~s~~~~~~~~~~--------------------  109 (211)
                         +....+-..   .++++|++++|+|++.               | +.++.+...+..                    
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333333333   4899999999999973               1 111111110000                    


Q ss_pred             ------------------------HHHh--------------------hcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 028292          110 ------------------------EIDL--------------------YSTNQDCIKLLVGNKVDKESERVVSKKEGIDF  145 (211)
Q Consensus       110 ------------------------~~~~--------------------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  145 (211)
                                              .+..                    ......+|+++|+||.|+......    ...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence                                    0000                    001245799999999997433221    1122


Q ss_pred             HHHh-CCcEEEeccCCCCCHHHHHH-HHHHHHHcCCCcc
Q 028292          146 AREY-GCLFLECSAKTRVNVEQCFE-ELVLKILDTPSLL  182 (211)
Q Consensus       146 ~~~~-~~~~~~~Sa~~~~~v~~~~~-~i~~~~~~~~~~~  182 (211)
                      .... ...++.+||+.+.++.++.+ .+.+.+.+.....
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~  275 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE  275 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence            2233 45799999999999999998 6999887765444

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.67  E-value=1.4e-16  Score=111.94  Aligned_cols=119  Identities=23%  Similarity=0.294  Sum_probs=76.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccc---cccCccEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSS---YYRGAQGI   88 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~~   88 (211)
                      .-.|+++|+.|+|||+|...|..+....+..+..   ....+.+ ......+.++|+||+.+.+.....   +...+.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e---~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME---NNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SS---EEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc---CCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            4579999999999999999999986643333331   1112222 223346888999999988764444   37889999


Q ss_pred             EEEEECCC-hhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCC
Q 028292           89 IMVYDVTR-RDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        89 ilv~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~  134 (211)
                      |||+|.+. ......+.++++..+.... ....+|++|++||+|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999974 4566777776666665333 3567999999999998543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=4.3e-15  Score=117.72  Aligned_cols=159  Identities=17%  Similarity=0.122  Sum_probs=112.7

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      ....++.-|-++|+...|||||+-.|-+...... ..-|.+  +.-..+... .+-.++|.||||+..|..|+....+-+
T Consensus       148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vt  225 (683)
T KOG1145|consen  148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVT  225 (683)
T ss_pred             hcCCCCCeEEEeecccCChhhHHHHHhhCceehh-hcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccc
Confidence            3445778899999999999999999988766211 112222  222233333 235789999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC---------CcEEEe
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG---------CLFLEC  156 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~  156 (211)
                      |++|+|+.+.|.-.-+..     +.+ .+....++|+++++||+|.++..   .+.+.+....++         +.++++
T Consensus       226 DIvVLVVAadDGVmpQT~-----EaI-khAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipi  296 (683)
T KOG1145|consen  226 DIVVLVVAADDGVMPQTL-----EAI-KHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPI  296 (683)
T ss_pred             cEEEEEEEccCCccHhHH-----HHH-HHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEe
Confidence            999999999986332222     112 22236899999999999976543   333333333333         468999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHc
Q 028292          157 SAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      ||++|+|++.+.+.++-.+.-
T Consensus       297 SAl~g~nl~~L~eaill~Ae~  317 (683)
T KOG1145|consen  297 SALTGENLDLLEEAILLLAEV  317 (683)
T ss_pred             ecccCCChHHHHHHHHHHHHH
Confidence            999999999999988776543

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.66  E-value=4.2e-15  Score=111.07  Aligned_cols=165  Identities=19%  Similarity=0.268  Sum_probs=122.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCc----cE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRGA----QG   87 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~----d~   87 (211)
                      -+|+|+|+.++||||||.+|.+.+  .+.+..|.++....+.-+  +...++.+|-+.|+.-...+....+...    -.
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            479999999999999999999876  445555555655555432  3336788999999776666666655443    47


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhc----------------------------------------------------
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYS----------------------------------------------------  115 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~----------------------------------------------------  115 (211)
                      +|++.|+++|..+-+....|...+.++.                                                    
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll  210 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL  210 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence            7889999999665544444766665443                                                    


Q ss_pred             --------CCCCCcEEEEEeCCCCC----CCc-------ccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          116 --------TNQDCIKLLVGNKVDKE----SER-------VVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       116 --------~~~~~p~ivv~nK~D~~----~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                              .+.++|++||.+|||..    ...       ......++.|+..+|...+++|++...|++-+..+|.++.+
T Consensus       211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence                    33579999999999972    111       22344577899999999999999999999999999999998


Q ss_pred             cCCC
Q 028292          177 DTPS  180 (211)
Q Consensus       177 ~~~~  180 (211)
                      ...-
T Consensus       291 G~~f  294 (473)
T KOG3905|consen  291 GFPF  294 (473)
T ss_pred             Cccc
Confidence            7544

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.65  E-value=6.3e-16  Score=113.21  Aligned_cols=164  Identities=18%  Similarity=0.245  Sum_probs=107.6

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-eeeeEEEE-EEECCeEEEEEEEeCCCcc-------cccccc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTI-GVDFKIKH-VALGGKKMKLAIWDTAGQE-------RFRTLT   78 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~i~D~~g~~-------~~~~~~   78 (211)
                      .....+++|+++|.+|+|||||||+|+.+...+..... +.+..... ..+++  -.+.|||+||-.       ++++..
T Consensus        34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~  111 (296)
T COG3596          34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY  111 (296)
T ss_pred             hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence            34567899999999999999999999976653333221 22222111 12233  358999999933       366778


Q ss_pred             cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-------ccCHHHHH--------
Q 028292           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER-------VVSKKEGI--------  143 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~--------  143 (211)
                      ..++...|.++++.+..|+.--  +...+++.+...  ..+.++++++|.+|...+-       ........        
T Consensus       112 ~d~l~~~DLvL~l~~~~draL~--~d~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~  187 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRALG--TDEDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE  187 (296)
T ss_pred             HHHhhhccEEEEeccCCCcccc--CCHHHHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence            8889999999999999988422  111133333222  2458999999999974431       11111111        


Q ss_pred             ---HHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          144 ---DFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       144 ---~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                         ++++. -.|++..+...+.|++.+...++..+...
T Consensus       188 ~~~~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         188 ALGRLFQE-VKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHHHHHhh-cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence               11111 23788899999999999999999988743

>TIGR00503 prfC peptide chain release factor 3

Probab=99.65  E-value=3.2e-16  Score=128.13  Aligned_cols=120  Identities=17%  Similarity=0.194  Sum_probs=84.7

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------------CCCcceeeeEEEEEEECCeEEEEEEEe
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE-------------------LSPTIGVDFKIKHVALGGKKMKLAIWD   67 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D   67 (211)
                      +..+..+|+|+|++++|||||+++|+...  ...                   .....|.++......++...+.+++||
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD   86 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD   86 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence            34567899999999999999999996421  110                   011223445555556666778899999


Q ss_pred             CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      |||+..+.......+..+|++|+|+|+++...- .... +.....    ..++|+++++||+|+...
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~~----~~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRK-LMEVTR----LRDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHH-HHHHHH----hcCCCEEEEEECccccCC
Confidence            999988877667778999999999999875211 1122 333332    367899999999998543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.65  E-value=7e-15  Score=116.35  Aligned_cols=65  Identities=12%  Similarity=0.045  Sum_probs=47.0

Q ss_pred             CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH-HHHHHHHHHHcCCCcccCCC
Q 028292          118 QDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ-CFEELVLKILDTPSLLSEGS  186 (211)
Q Consensus       118 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~-~~~~i~~~~~~~~~~~~~~~  186 (211)
                      ..+|+++|+||.|...... ......++   ....++.+||+.+.++.+ +.+.+.+.+.+....++.+.
T Consensus       216 t~KPvI~VlNK~D~~~~~~-~l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~  281 (396)
T PRK09602        216 ISKPMVIAANKADLPPAEE-NIERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGE  281 (396)
T ss_pred             cCCCEEEEEEchhcccchH-HHHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcccc
Confidence            4589999999999743221 11222222   345799999999999999 88999998888877776654

>PRK12739 elongation factor G; Reviewed

Probab=99.65  E-value=5.1e-15  Score=125.46  Aligned_cols=118  Identities=17%  Similarity=0.154  Sum_probs=83.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----CCCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----EELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (211)
                      .++..+|+++|++++|||||+++|+...-     ....            ...|.+.......+.....+++|+||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            44678999999999999999999975311     0011            133444444444444456789999999998


Q ss_pred             cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .+...+...+..+|++|+|+|+.+...-+.. . +...+.    ..++|+++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCC
Confidence            8877888889999999999999876433222 1 222232    46789999999999853

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=2.4e-15  Score=115.86  Aligned_cols=156  Identities=19%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCcceeeeEEEEEEECCeE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKK   60 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~   60 (211)
                      ...++++++|+..+|||||+-+|+...-                              .......|.++......++...
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            4568999999999999999999985311                              0112334566777777777788


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  137 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  137 (211)
                      +.++|+|+||+..|-...-....++|++|+|+|+++.+   .|...-......+.... ..-..+||++||+|..+-++-
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lGi~~lIVavNKMD~v~wde~  163 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LGIKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cCCceEEEEEEcccccccCHH
Confidence            89999999999998888888889999999999998873   11111111111111222 234557888999999763333


Q ss_pred             CHHHHH----HHHHHhC-----CcEEEeccCCCCCHHHH
Q 028292          138 SKKEGI----DFAREYG-----CLFLECSAKTRVNVEQC  167 (211)
Q Consensus       138 ~~~~~~----~~~~~~~-----~~~~~~Sa~~~~~v~~~  167 (211)
                      ..+++.    .+....+     ++|+++|+..|.|+.+.
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            333322    3333333     56999999999998654

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.64  E-value=4e-15  Score=119.54  Aligned_cols=161  Identities=14%  Similarity=0.150  Sum_probs=101.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC------C--cceeeeEE----------EEE-EEC--------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS------P--TIGVDFKI----------KHV-ALG--------------   57 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~--~~~~~~~~----------~~~-~~~--------------   57 (211)
                      ...++|.++|+...|||||+.+|++.......      -  ..|.....          ..+ ...              
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            45689999999999999999999964321110      0  11111000          000 000              


Q ss_pred             --CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           58 --GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        58 --~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                        .....+.|+|+||++.|.......+..+|++++|+|+... ...+.. + .+.....   ..-.++++++||+|+.+.
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-e-hl~i~~~---lgi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-E-HLAAVEI---MKLKHIIILQNKIDLVKE  186 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-H-HHHHHHH---cCCCcEEEEEecccccCH
Confidence              0023689999999998877777778899999999999874 222221 2 2222222   123568999999998643


Q ss_pred             cccC--HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          135 RVVS--KKEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       135 ~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      ....  .++..++...   .+.+++++||++|.|++.+++.|.+.+.
T Consensus       187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            2211  2233333322   3568999999999999999998887554

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.64  E-value=1.7e-14  Score=115.78  Aligned_cols=168  Identities=17%  Similarity=0.258  Sum_probs=121.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccC----c
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRG----A   85 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~----~   85 (211)
                      ..-+|+|+|..++||||||.+|.+.+  ...++.+.+|....+.-+  +...++.+|.+.|...+..+....+..    -
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            34689999999999999999987644  445566666666655432  223578999999877777776665543    2


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhc--------------------------------------------------
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYS--------------------------------------------------  115 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------------------------  115 (211)
                      -.+|||+|.+.|..+.+-...|...++.+.                                                  
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            578999999998766533333444433221                                                  


Q ss_pred             -----------CCCCCcEEEEEeCCCCCC----C-------cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292          116 -----------TNQDCIKLLVGNKVDKES----E-------RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus       116 -----------~~~~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                                 .+-++|++||++|+|...    .       .......++.++..+|+.++++|++...+++.++.+|.+
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence                       112589999999999622    1       123344577888899999999999999999999999999


Q ss_pred             HHHcCCCc
Q 028292          174 KILDTPSL  181 (211)
Q Consensus       174 ~~~~~~~~  181 (211)
                      +++.....
T Consensus       262 ~l~~~~f~  269 (472)
T PF05783_consen  262 RLYGFPFK  269 (472)
T ss_pred             HhccCCCC
Confidence            99876654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.63  E-value=4.5e-15  Score=125.82  Aligned_cols=121  Identities=17%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----CCCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----EELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ..++..||+++|++++|||||+++|+...-     ....            ...|.+.......+.....++++|||||+
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~   85 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH   85 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence            344667999999999999999999975321     0011            12344455445555555678999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      ..+...+...+..+|++|+|+|+.+....+...  +...+.    ..++|+++++||+|+....
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~----~~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQAN----RYEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHH----HcCCCEEEEEECCCCCCCC
Confidence            888777888899999999999999865544322  222232    3578999999999986543

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.61  E-value=2e-15  Score=110.27  Aligned_cols=178  Identities=15%  Similarity=0.180  Sum_probs=104.7

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcc-eeeeEEEE------EEE------------------------
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTI-GVDFKIKH------VAL------------------------   56 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~-~~~~~~~~------~~~------------------------   56 (211)
                      -..+++-|+|+|..|+|||||++||...-.. ...|.. ..+..+..      +.+                        
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts   94 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS   94 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence            4457789999999999999999999753221 110000 00000000      000                        


Q ss_pred             -----------------CCeEEEEEEEeCCCcccc------ccccccccc--CccEEEEEEECC---ChhcHHHHHHHHH
Q 028292           57 -----------------GGKKMKLAIWDTAGQERF------RTLTSSYYR--GAQGIIMVYDVT---RRDTFTNLADIWA  108 (211)
Q Consensus        57 -----------------~~~~~~~~i~D~~g~~~~------~~~~~~~~~--~~d~~ilv~d~~---~~~s~~~~~~~~~  108 (211)
                                       ......+.++||||+-+.      ..++...+.  .--++++++|..   ++.+|-+..-+.-
T Consensus        95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc  174 (366)
T KOG1532|consen   95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC  174 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence                             122345789999996542      122222222  234677778764   4566765544333


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCCCCCccc--------CHHHHHHH---------HHH---------hCCcEEEeccCCCC
Q 028292          109 KEIDLYSTNQDCIKLLVGNKVDKESERVV--------SKKEGIDF---------ARE---------YGCLFLECSAKTRV  162 (211)
Q Consensus       109 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~---------~~~---------~~~~~~~~Sa~~~~  162 (211)
                      .++.    +...|+|++.||+|+....-.        ..+++.+.         .+.         .++..+-+|+.+|+
T Consensus       175 Sily----ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~  250 (366)
T KOG1532|consen  175 SILY----KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE  250 (366)
T ss_pred             HHHH----hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence            3333    578999999999998543110        01111110         000         14678999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCcccCCCCCcc
Q 028292          163 NVEQCFEELVLKILDTPSLLSEGSSGVK  190 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~  190 (211)
                      |.+++|..+.+.+-+....+.+...+.+
T Consensus       251 G~ddf~~av~~~vdEy~~~ykp~~Ek~k  278 (366)
T KOG1532|consen  251 GFDDFFTAVDESVDEYEEEYKPEYEKKK  278 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999998877666655444433

>PRK09866 hypothetical protein; Provisional

Probab=99.59  E-value=1e-13  Score=113.03  Aligned_cols=109  Identities=15%  Similarity=0.114  Sum_probs=72.6

Q ss_pred             EEEEEEeCCCcccc-----cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           61 MKLAIWDTAGQERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        61 ~~~~i~D~~g~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      .++.|+||||-...     .......+..+|++++|+|.+...+..+. . +...+....  ...|+++|+||+|+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-e-Ilk~Lkk~~--K~~PVILVVNKIDl~dre  305 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-E-VREAILAVG--QSVPLYVLVNKFDQQDRN  305 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-H-HHHHHHhcC--CCCCEEEEEEcccCCCcc
Confidence            35789999995432     22334468899999999999875443331 1 334443321  236999999999985433


Q ss_pred             ccCHHHHHHHHHH----hC---CcEEEeccCCCCCHHHHHHHHHH
Q 028292          136 VVSKKEGIDFARE----YG---CLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus       136 ~~~~~~~~~~~~~----~~---~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                      ....+.+..+...    .+   ..+|++||++|.|++++++.|..
T Consensus       306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            3234444444322    22   26899999999999999998877

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.58  E-value=6.3e-14  Score=109.62  Aligned_cols=163  Identities=21%  Similarity=0.223  Sum_probs=117.5

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--------------CCCCCcceeeeEEE--EEEE---CCeEEEEEEEeCC
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--------------EELSPTIGVDFKIK--HVAL---GGKKMKLAIWDTA   69 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~   69 (211)
                      +.++.-|..++-+-..|||||.-|++....              .......|.+....  .+.+   +++.|.++++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            345566888999999999999999985321              01112223333322  2222   5688999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh
Q 028292           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY  149 (211)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  149 (211)
                      |+-+|.......+..+.++++|+|++..-.-+.+.+ .+..+     ..+.-++-|+||.|++.....  +-..+...-.
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAl-----e~~LeIiPViNKIDLP~Adpe--rvk~eIe~~i  156 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENNLEIIPVLNKIDLPAADPE--RVKQEIEDII  156 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHH-----HcCcEEEEeeecccCCCCCHH--HHHHHHHHHh
Confidence            999999888888889999999999998866666666 33333     256678999999999765532  2233344445


Q ss_pred             CC---cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          150 GC---LFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       150 ~~---~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      |+   ..+.+||++|.||+++++.|++.+....
T Consensus       157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             CCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence            55   4788999999999999999999876544

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.57  E-value=7.3e-15  Score=115.35  Aligned_cols=163  Identities=17%  Similarity=0.123  Sum_probs=116.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc----cc-----cccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF----RT-----LTSSYY   82 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~-----~~~~~~   82 (211)
                      +.-.++|+|.|+||||||+|.+..... +..|...++......+++.....++++||||.-+.    ..     .+....
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             CcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            556789999999999999999998875 55566666666666666777788999999993221    11     111122


Q ss_pred             cCccEEEEEEECCC--hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH--HHHHHHH-hCCcEEEec
Q 028292           83 RGAQGIIMVYDVTR--RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKE--GIDFARE-YGCLFLECS  157 (211)
Q Consensus        83 ~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--~~~~~~~-~~~~~~~~S  157 (211)
                      +--.+++|+.|++.  ..|...... ++..+...-  .++|.|+|+||+|+.....+..+.  ..+...+ -+++++++|
T Consensus       246 HLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS  322 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS  322 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHHH-HHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence            23367899999975  356666555 455555444  689999999999997776666543  3333333 448999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcC
Q 028292          158 AKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~~~~~~  178 (211)
                      +.+.+||.++-+...+.++..
T Consensus       323 ~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  323 CVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             ccchhceeeHHHHHHHHHHHH
Confidence            999999999888888887654

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3e-14  Score=100.42  Aligned_cols=156  Identities=22%  Similarity=0.273  Sum_probs=101.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc---CccEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR---GAQGIIM   90 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~il   90 (211)
                      -.|+++|+.++|||+|.-.|..+......++.  +.....+.+...  .++++|.||+.+.+.....++.   .+-++|+
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            46999999999999999999988553222222  222333333333  3788999999988876666666   7899999


Q ss_pred             EEECCC-hhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcc--cCHH----HHH-------------------
Q 028292           91 VYDVTR-RDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERV--VSKK----EGI-------------------  143 (211)
Q Consensus        91 v~d~~~-~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~--~~~~----~~~-------------------  143 (211)
                      |+|... .....++.++++..+..- .....+|++++.||.|+.-...  ....    |+.                   
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            999754 334455666555555433 1356789999999999832211  1100    000                   


Q ss_pred             ---------H--HHH--HhCCcEEEeccCCCCCHHHHHHHHHHH
Q 028292          144 ---------D--FAR--EYGCLFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       144 ---------~--~~~--~~~~~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                               .  |.+  +..+.|.++|++++ +++++-+||.+.
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                     0  111  12356889999998 899999998765

>PRK00007 elongation factor G; Reviewed

Probab=99.57  E-value=5.7e-14  Score=119.09  Aligned_cols=121  Identities=16%  Similarity=0.156  Sum_probs=84.4

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhC--CCC---CCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD--TFE---ELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ..++..||+++|++++|||||+++|+..  ...   ...            ...|.+.......+......++++||||+
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~   85 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH   85 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence            3456789999999999999999999742  110   011            23344455444444445678999999998


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      ..+.......+..+|++|+|+|+......+...  ....+.    ..++|+++++||+|+....
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~----~~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQAD----KYKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHH----HcCCCEEEEEECCCCCCCC
Confidence            877766677788899999999988764443322  222232    4568999999999986543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.56  E-value=7.5e-14  Score=105.73  Aligned_cols=126  Identities=16%  Similarity=0.145  Sum_probs=74.1

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------ccccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------TSSYY   82 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~   82 (211)
                      ..+.++|+|+|.+|+||||++|++++..........+.+...........+..+.+|||||..+....       ...++
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            35789999999999999999999998775333232222222222222223467999999996543211       11111


Q ss_pred             --cCccEEEEEEECCCh--hcH-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 028292           83 --RGAQGIIMVYDVTRR--DTF-TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS  138 (211)
Q Consensus        83 --~~~d~~ilv~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  138 (211)
                        ...|++++|.+++..  ... ..+...+...+..   .--.+.||++|++|..++...+
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~---~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK---DIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh---hhhccEEEEEECCccCCCCCCC
Confidence              258999999665432  212 2222223332222   2335689999999986554444

>PRK12740 elongation factor G; Reviewed

Probab=99.55  E-value=3.6e-14  Score=120.29  Aligned_cols=108  Identities=20%  Similarity=0.260  Sum_probs=75.1

Q ss_pred             EcCCCCcHHHHHHHHhhCCCC--C---CC------------CcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 028292           19 IGDSGVGKSTLLLSFTSDTFE--E---LS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY   81 (211)
Q Consensus        19 ~G~~~~GKstli~~l~~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (211)
                      +|++++|||||+++|+...-.  .   ..            ...|.+.......+....+.+++|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999653210  0   00            012223333333444455789999999998887777888


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      +..+|++++|+|++.......... | ..+.    ..++|+++++||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~-~-~~~~----~~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETV-W-RQAE----KYGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHH-H-HHHH----HcCCCEEEEEECCCCC
Confidence            899999999999998766544322 2 2222    3578999999999974

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.55  E-value=2.4e-14  Score=92.39  Aligned_cols=136  Identities=22%  Similarity=0.160  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc----cccccCccEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT----SSYYRGAQGIIM   90 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~d~~il   90 (211)
                      ||.++|..|+|||||.++|.+... .+..+...++       ...    -.+||||.-.....|    ......+|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh-hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            789999999999999999998764 2322322221       111    135999943333333    334578999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~  169 (211)
                      |-.++++++.-..      .+..   -...|+|-|++|.|+.+.  .......+|..+-|. ++|++|+.++.|+++++.
T Consensus        71 v~~and~~s~f~p------~f~~---~~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          71 VHAANDPESRFPP------GFLD---IGVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eecccCccccCCc------cccc---ccccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            9999998653221      1111   345668999999999763  345566778888886 899999999999999998


Q ss_pred             HHHH
Q 028292          170 ELVL  173 (211)
Q Consensus       170 ~i~~  173 (211)
                      .|..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8754

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.55  E-value=8.4e-14  Score=103.82  Aligned_cols=125  Identities=18%  Similarity=0.264  Sum_probs=74.1

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-------
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--T-L-------   77 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~-------   77 (211)
                      ++....++|+|+|.+|+|||||+|+|++..........+.+..............+.+|||||.....  . .       
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            45567899999999999999999999998763333332223333333322334578999999955431  0 0       


Q ss_pred             cccccc--CccEEEEEEECCChh-cHHHHHHHHHHHHHh-hcCCCCCcEEEEEeCCCCCCC
Q 028292           78 TSSYYR--GAQGIIMVYDVTRRD-TFTNLADIWAKEIDL-YSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        78 ~~~~~~--~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      ...++.  ..|++++|..++... .+.+. . +.+.+.. +...--.++++|.||+|...+
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~-llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDL-P-LLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHHH-H-HHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            112222  568888887665432 22211 1 2333322 221222568999999998543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK13768 GTPase; Provisional

Probab=99.53  E-value=7.5e-14  Score=104.73  Aligned_cols=115  Identities=17%  Similarity=0.167  Sum_probs=72.5

Q ss_pred             EEEEEeCCCcccc---cccccccccC-----ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           62 KLAIWDTAGQERF---RTLTSSYYRG-----AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        62 ~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .+.+||+||+.+.   ...+..+++.     .+++++++|+.......+....+........ ..++|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            5899999997553   2333222222     7999999999765544333322221211111 35799999999999865


Q ss_pred             CcccCH--HHH------------------------HHHHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          134 ERVVSK--KEG------------------------IDFAREYG--CLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       134 ~~~~~~--~~~------------------------~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      ..+...  ...                        .+.....+  .+++++|++++.|+++++++|.+.+..
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            433211  000                        01122334  478999999999999999999988754

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.51  E-value=8.4e-14  Score=118.47  Aligned_cols=116  Identities=19%  Similarity=0.190  Sum_probs=81.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC---------------CCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD---------------TFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~---------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ++..||+++|+.++|||||+++|+..               .+..    ...+...........+++..+.+++|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45679999999999999999999853               1111    1112222222223346677889999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      ..+.......+..+|++|+|+|+.+....+.... |.. ..    ..+.|+++++||+|..
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~-~~----~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQ-AL----KENVKPVLFINKVDRL  151 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHH-HH----HcCCCEEEEEEChhcc
Confidence            9888777888999999999999987532222111 222 11    3567889999999984

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=9e-13  Score=99.55  Aligned_cols=162  Identities=18%  Similarity=0.208  Sum_probs=97.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC----CCCC--CCcceeee--EEEEEEE-------CCeEEEEEEEeCCCcccccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT----FEEL--SPTIGVDF--KIKHVAL-------GGKKMKLAIWDTAGQERFRTLT   78 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~----~~~~--~~~~~~~~--~~~~~~~-------~~~~~~~~i~D~~g~~~~~~~~   78 (211)
                      +|+.++|+..+|||||.++|..-.    |+..  ....|.+.  ....+.+       .++..++.++|+||+...-...
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti   87 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI   87 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHH
Confidence            999999999999999999997532    2221  11122211  1111211       4566788999999986555444


Q ss_pred             cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCH-HHHHHHHH---H----
Q 028292           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSK-KEGIDFAR---E----  148 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~-~~~~~~~~---~----  148 (211)
                      .....-.|..++|+|+.....-+.....++-.+      ...-.+||+||.|..++.+  ... +......+   .    
T Consensus        88 iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~  161 (522)
T KOG0461|consen   88 IGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD  161 (522)
T ss_pred             HhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence            444455588999999987654444433222221      2334678888888755422  111 12222222   1    


Q ss_pred             hCCcEEEeccCCC----CCHHHHHHHHHHHHHcCCCc
Q 028292          149 YGCLFLECSAKTR----VNVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       149 ~~~~~~~~Sa~~~----~~v~~~~~~i~~~~~~~~~~  181 (211)
                      -+.|++++||+.|    +++.++...|-.++.+....
T Consensus       162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd  198 (522)
T KOG0461|consen  162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD  198 (522)
T ss_pred             CCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence            1369999999999    56666666665555554433

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.50  E-value=3e-13  Score=99.06  Aligned_cols=163  Identities=15%  Similarity=0.185  Sum_probs=96.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCC---CcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------c---cc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------L---TS   79 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~   79 (211)
                      ++|+|+|.+|+||||++|.+++.......   .............+++  ..+.++||||..+...        +   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999988762221   2223344444455566  4578899999432211        1   11


Q ss_pred             ccccCccEEEEEEECCChhcHH--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHhC
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFT--NLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-------KKEGIDFAREYG  150 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~  150 (211)
                      ....+.|+++||+..... +-.  .....+...+..   ..-..++||++..|......+.       ......+....+
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~---~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~  154 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGE---EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG  154 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCG---GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccH---HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence            234578999999999833 222  222223333332   2234578888888865444321       122445666677


Q ss_pred             CcEEEeccC------CCCCHHHHHHHHHHHHHcCCCcc
Q 028292          151 CLFLECSAK------TRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       151 ~~~~~~Sa~------~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      -.|+..+.+      ....+.+++..|-+.+.++...+
T Consensus       155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~  192 (212)
T PF04548_consen  155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQY  192 (212)
T ss_dssp             TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred             CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCC
Confidence            778877766      34578899999888888776544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00101 ureG urease accessory protein UreG

Probab=99.49  E-value=8.7e-13  Score=95.42  Aligned_cols=101  Identities=19%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE--EEEEeCCCCCCCcccC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK--LLVGNKVDKESERVVS  138 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~--ivv~nK~D~~~~~~~~  138 (211)
                      ..+.++++.|..-.....+.   -+|.+|.|+|+.+.++...  . +.         .++.+  ++++||+|+.+.....
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~-~~---------~qi~~ad~~~~~k~d~~~~~~~~  156 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--K-GG---------PGITRSDLLVINKIDLAPMVGAD  156 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--h-hH---------hHhhhccEEEEEhhhcccccccc
Confidence            45667788874222222221   2578999999987654221  1 11         12223  7999999997532333


Q ss_pred             HHHHHHHHHH--hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          139 KKEGIDFARE--YGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       139 ~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      .+...+....  .+.+++++||++|+|+++++++|.+++.
T Consensus       157 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       157 LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4444444444  3579999999999999999999997754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=6.6e-13  Score=106.20  Aligned_cols=169  Identities=19%  Similarity=0.181  Sum_probs=112.9

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCC--------------------------C----CCCCCcceeeeEEEEEEEC
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDT--------------------------F----EELSPTIGVDFKIKHVALG   57 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--------------------------~----~~~~~~~~~~~~~~~~~~~   57 (211)
                      .....-++.+|+|+..+|||||+.+++..-                          +    .......|.+..+....++
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe  251 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE  251 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence            344477899999999999999999997521                          0    1122344667777788888


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHH---HHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      .....++|+|+||+..|-........++|++|+|+|++..+   .|+   ...+ ...+++.+   .-..++|++||+|+
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L---gi~qlivaiNKmD~  327 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL---GISQLIVAINKMDL  327 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc---CcceEEEEeecccc
Confidence            88889999999999999888888889999999999997642   122   1112 22233322   24557888999998


Q ss_pred             CCCcccCHHHH----HHHH-HHh-----CCcEEEeccCCCCCHHHH-HHHHHHHHHcCCC
Q 028292          132 ESERVVSKKEG----IDFA-REY-----GCLFLECSAKTRVNVEQC-FEELVLKILDTPS  180 (211)
Q Consensus       132 ~~~~~~~~~~~----~~~~-~~~-----~~~~~~~Sa~~~~~v~~~-~~~i~~~~~~~~~  180 (211)
                      .+=.+-..+++    ..|. ...     ++.|++||+..|+|+-.. -..-+..+|+.+.
T Consensus       328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~  387 (603)
T KOG0458|consen  328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPT  387 (603)
T ss_pred             cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCCh
Confidence            65333223332    2333 333     347999999999998655 2223444444433

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.47  E-value=9e-13  Score=114.28  Aligned_cols=143  Identities=17%  Similarity=0.173  Sum_probs=89.7

Q ss_pred             cHHHHHHHHhhCCCCC-CCCcceeeeEEEEEEECC----------------eEEEEEEEeCCCcccccccccccccCccE
Q 028292           25 GKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGG----------------KKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus        25 GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +||||+.++.+..... ..-....++....+..+.                ....+.||||||++.+..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999776511 111111111111222211                01238999999999998877777888999


Q ss_pred             EEEEEECCC---hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HHHHH-HH------
Q 028292           88 IIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS------------KKEGI-DF------  145 (211)
Q Consensus        88 ~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~~~~-~~------  145 (211)
                      +++|+|+++   +++++.+.     .+.    ..++|+++|+||+|+.+.....            .+... ++      
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~-----~lk----~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN-----ILR----QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH-----HHH----HcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999987   34444332     222    2468999999999985322110            01000 00      


Q ss_pred             ----HHH-------------h--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          146 ----ARE-------------Y--GCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       146 ----~~~-------------~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                          ...             +  .++++++||++|+|+++++.+|.....
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                011             1  358999999999999999988865443

>PTZ00258 GTP-binding protein; Provisional

Probab=99.47  E-value=1e-12  Score=103.25  Aligned_cols=84  Identities=21%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCe---------------EEEEEEEeCCCccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGK---------------KMKLAIWDTAGQER   73 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~i~D~~g~~~   73 (211)
                      ...++|+++|.||||||||+|+|++... .....++++..  ...+.+.+.               ..++.++|+||...
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            4678999999999999999999987764 33333444333  323333322               23589999999432


Q ss_pred             c-------cccccccccCccEEEEEEECC
Q 028292           74 F-------RTLTSSYYRGAQGIIMVYDVT   95 (211)
Q Consensus        74 ~-------~~~~~~~~~~~d~~ilv~d~~   95 (211)
                      -       .......++++|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1       112233467899999999974

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.45  E-value=6.7e-13  Score=99.09  Aligned_cols=96  Identities=21%  Similarity=0.244  Sum_probs=76.4

Q ss_pred             ccccccccccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG  150 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  150 (211)
                      +++..+.+.++.++|++++|||++++. +|..+.. |+..+.    ..++|+++|+||+|+.+...+..+.+..+ ...+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~----~~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g   97 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAE----AQNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIG   97 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEECcccCCCHHHHHHHHHHH-HHCC
Confidence            556777888899999999999999887 8888766 665554    36799999999999966554444444444 4578


Q ss_pred             CcEEEeccCCCCCHHHHHHHHHH
Q 028292          151 CLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus       151 ~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                      .+++++||++|.|+++++..+..
T Consensus        98 ~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        98 YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CeEEEEecCCchhHHHHHhhhcC
Confidence            89999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.45  E-value=1.8e-12  Score=101.32  Aligned_cols=162  Identities=17%  Similarity=0.207  Sum_probs=116.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC--C-------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E-------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (211)
                      ..-||.++-+...|||||+..|+.+.-  .             ......|.++-.+..-+....+.++|+||||+.+|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            345899999999999999999986532  1             1223335566666666677778999999999999999


Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFARE-------  148 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------  148 (211)
                      ..+..+.=.|++++++|+.....-+.-      .+.......+.+.|||+||.|.+..+. .-..+...++..       
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQTr------FVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ  157 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQTR------FVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ  157 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCchh------hhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence            999999999999999999886433221      111111146666789999999876653 223344444443       


Q ss_pred             hCCcEEEeccCCCC----------CHHHHHHHHHHHHHcCC
Q 028292          149 YGCLFLECSAKTRV----------NVEQCFEELVLKILDTP  179 (211)
Q Consensus       149 ~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~~~~~  179 (211)
                      ..+|+++.|+++|.          ++.-+|+.|++.+....
T Consensus       158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            45689999998873          67778888888776544

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.45  E-value=5.1e-12  Score=98.43  Aligned_cols=160  Identities=14%  Similarity=0.145  Sum_probs=98.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC----CCC-----------CCCCcce---eeeEE-------EEEE-ECCeEEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD----TFE-----------ELSPTIG---VDFKI-------KHVA-LGGKKMKLAI   65 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~----~~~-----------~~~~~~~---~~~~~-------~~~~-~~~~~~~~~i   65 (211)
                      ..+.|.|+|+.++||||||++|.+.    ...           ..++..|   ++...       ..+. .++...++.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            5689999999999999999999987    322           3334445   22222       2222 2455678999


Q ss_pred             EeCCCcccc--------cc--c-------------------cccccc-CccEEEEEE-ECC----ChhcHHHHHHHHHHH
Q 028292           66 WDTAGQERF--------RT--L-------------------TSSYYR-GAQGIIMVY-DVT----RRDTFTNLADIWAKE  110 (211)
Q Consensus        66 ~D~~g~~~~--------~~--~-------------------~~~~~~-~~d~~ilv~-d~~----~~~s~~~~~~~~~~~  110 (211)
                      +||+|-..-        ..  +                   .+..+. ++|+.|+|. |.+    .++.+......+...
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            999992111        11  0                   122344 889999988 764    123344444445555


Q ss_pred             HHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          111 IDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       111 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      +.    ..++|+++|+|+.|-....  ..+.+.++...++++++.+|+..- .-+++..-+.+.+++.
T Consensus       176 Lk----~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l-~~~DI~~il~~vL~EF  236 (492)
T TIGR02836       176 LK----ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESM-RESDILSVLEEVLYEF  236 (492)
T ss_pred             HH----hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHc-CHHHHHHHHHHHHhcC
Confidence            55    5789999999999942222  333444666778999888887542 2344444444445544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.44  E-value=2.3e-12  Score=97.53  Aligned_cols=152  Identities=22%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-------------C-------------------CCCCcceeeeEEEEEEEC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-------------E-------------------ELSPTIGVDFKIKHVALG   57 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------~-------------------~~~~~~~~~~~~~~~~~~   57 (211)
                      ....+|.+.+|...=||||||-||+...-             .                   +-....|.++++....+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            34678999999999999999999986311             0                   001223555666665566


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 028292           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  137 (211)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  137 (211)
                      ..+..+.+-||||++.|....-.....+|.+|+++|+...-.-+.-+.   ..+...  ..-..++++.||+||.+-.+.
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH---s~I~sL--LGIrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH---SFIASL--LGIRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH---HHHHHH--hCCcEEEEEEeeecccccCHH
Confidence            666788999999999999888788888999999999966522222111   112221  234557788899999765544


Q ss_pred             CHHH----HHHHHHHhCC---cEEEeccCCCCCHHH
Q 028292          138 SKKE----GIDFAREYGC---LFLECSAKTRVNVEQ  166 (211)
Q Consensus       138 ~~~~----~~~~~~~~~~---~~~~~Sa~~~~~v~~  166 (211)
                      ..++    -..|+...++   .++++||..|+||-.
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            4443    3356666665   689999999998753

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.44  E-value=1.2e-12  Score=95.70  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=86.9

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-------CCCccee------eeEEEEEEECC-----------------
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-------LSPTIGV------DFKIKHVALGG-----------------   58 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-------~~~~~~~------~~~~~~~~~~~-----------------   58 (211)
                      +......|+|+|+.|+|||||+++++......       .....+.      ......+.+.+                 
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~   97 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED   97 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence            34467899999999999999999998541100       0000000      00000011110                 


Q ss_pred             ---eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           59 ---KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        59 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                         ..+.+.++|+.|.-....   .+....+..+.|+|+.+.+...  .. .   ..    ....|.++++||+|+.+..
T Consensus        98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~-~---~~----~~~~a~iiv~NK~Dl~~~~  164 (207)
T TIGR00073        98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LK-Y---PG----MFKEADLIVINKADLAEAV  164 (207)
T ss_pred             hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hh-h---Hh----HHhhCCEEEEEHHHccccc
Confidence               123566777777211111   1112234556677776543211  11 1   11    1346789999999996543


Q ss_pred             ccCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHHH
Q 028292          136 VVSKKEGIDFAREYG--CLFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       136 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      .....+..+.....+  .+++++||+++.|++++++++.+.
T Consensus       165 ~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       165 GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            333334444444444  789999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd00066 G-alpha G protein alpha subunit

Probab=99.43  E-value=1e-11  Score=96.24  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=84.9

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                      ..+.+.+||++|+...+..|..++.+++++|+|+|+++.          ..+.+....+...+.... -.++|+++++||
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~-~~~~pill~~NK  237 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW-FANTSIILFLNK  237 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc-ccCCCEEEEccC
Confidence            356789999999999999999999999999999999974          344444443444444322 468999999999


Q ss_pred             CCCCCC----------------cccCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          129 VDKESE----------------RVVSKKEGIDFARE----------YGCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       129 ~D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      .|+...                ..-+.+.+..+...          ..+-++.++|.+..++..+|+.+.+.+...
T Consensus       238 ~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         238 KDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             hHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            996210                01233444444332          123457788999999999999988887754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.41  E-value=8.3e-13  Score=114.07  Aligned_cols=118  Identities=18%  Similarity=0.204  Sum_probs=81.3

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC--C-------------CCCcceeeeEE--EEEEE--------------C
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--E-------------LSPTIGVDFKI--KHVAL--------------G   57 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~-------------~~~~~~~~~~~--~~~~~--------------~   57 (211)
                      ..++..||+|+|+.++|||||+.+|+...-.  .             .....|.++..  ..+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            3456779999999999999999999864320  0             00011112221  12222              2


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      +..+.++|+||||+.+|.......++.+|++|+|+|+...-....... |....     ..++|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~-----~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL-----GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHH-----HCCCCEEEEEECCccc
Confidence            236788999999999998888888899999999999987643332221 33222     4689999999999985

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.41  E-value=1.6e-13  Score=101.71  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=58.6

Q ss_pred             EEEEEeCCCcccccccccccc--------cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           62 KLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .+.++|||||.++-..|...-        ...-++|+++|.....+.......++....... ..+.|.+.|+||+|+.+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence            578999999877543332222        345688899998755443322222222222222 46899999999999965


Q ss_pred             Ccc---c-------------------CHHHHHHHHHHhC-C-cEEEeccCCCCCHHHHHHHHHHHH
Q 028292          134 ERV---V-------------------SKKEGIDFAREYG-C-LFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       134 ~~~---~-------------------~~~~~~~~~~~~~-~-~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      ...   .                   ..+.+.+...+++ + .++++|+.+++|+++++..+-+++
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            220   0                   0001111111233 3 699999999999999999887764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.41  E-value=9.7e-13  Score=113.48  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCC-------------CCcceeeeEE--EEEEEC--------CeEEEEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EEL-------------SPTIGVDFKI--KHVALG--------GKKMKLA   64 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~-------------~~~~~~~~~~--~~~~~~--------~~~~~~~   64 (211)
                      .++..||+++|+.++|||||+++|+...-  ...             ....|.+...  ..+.+.        +....++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            34566999999999999999999986321  000             0011112221  122222        1256799


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      |+||||+.++.......++.+|++|+|+|+...-..... ..|. .+.    ..++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~-~~~----~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLR-QAL----QERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHH-HHH----HcCCCEEEEEEChhhh
Confidence            999999998887788888999999999999886333222 2132 222    3568999999999985

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=4.5e-12  Score=94.91  Aligned_cols=182  Identities=15%  Similarity=0.122  Sum_probs=120.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCC--------------CCCccee--------eeEEEEEEEC------CeEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE--------------LSPTIGV--------DFKIKHVALG------GKKMK   62 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~--------------~~~~~~~--------~~~~~~~~~~------~~~~~   62 (211)
                      ...+||.++|+...|||||..+|.+--.+.              |......        +.+...-.+.      .-..+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            467999999999999999999998632100              0000000        0011111111      12246


Q ss_pred             EEEEeCCCcccccccccccccCccEEEEEEECCCh----hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--c
Q 028292           63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER--V  136 (211)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~  136 (211)
                      +.|+|.||++-.-........-.|++++|+.++.+    ++-+++..  +..+      .-+.++++-||.|+....  .
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A--leIi------gik~iiIvQNKIDlV~~E~Al  159 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA--LEII------GIKNIIIVQNKIDLVSRERAL  159 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH--Hhhh------ccceEEEEecccceecHHHHH
Confidence            88999999987766655555567999999999874    34444432  2333      234588999999995433  2


Q ss_pred             cCHHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHcCCCcccCCCCCcccccccCCCCC
Q 028292          137 VSKKEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQ  200 (211)
Q Consensus       137 ~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (211)
                      .+++++++|.+.   .+.+++++||..+.|++.+++.|.+.+.............--.+.|...++.
T Consensus       160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPG  226 (415)
T COG5257         160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPG  226 (415)
T ss_pred             HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCC
Confidence            345566666654   4679999999999999999999999998777766665555555555554444

>cd01882 BMS1 Bms1

Probab=99.39  E-value=1.1e-11  Score=91.58  Aligned_cols=140  Identities=18%  Similarity=0.206  Sum_probs=84.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ......|+++|.+|+|||||++.+.+... .......|. +   .+ ......++.++||||..  ..+ ......+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence            34567899999999999999999987532 112222221 1   11 11245578899999853  222 2335789999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCcccC---HHHHHH-HHHH--hCCcEEEeccCCC
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVS---KKEGID-FARE--YGCLFLECSAKTR  161 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~  161 (211)
                      ++++|.+........ . +...+.    ..+.|. ++|+||.|+.+.....   ..++.. +...  .+.+++.+||++.
T Consensus       108 llviDa~~~~~~~~~-~-i~~~l~----~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         108 LLLIDASFGFEMETF-E-FLNILQ----VHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             EEEEecCcCCCHHHH-H-HHHHHH----HcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence            999999865433221 1 333333    345675 4599999985432111   112222 2222  2358999999987


Q ss_pred             CC
Q 028292          162 VN  163 (211)
Q Consensus       162 ~~  163 (211)
                      -.
T Consensus       182 ~~  183 (225)
T cd01882         182 GR  183 (225)
T ss_pred             CC
Confidence            53

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.39  E-value=1.7e-11  Score=95.28  Aligned_cols=81  Identities=21%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeE---------------EEEEEEeCCCccccc-
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKK---------------MKLAIWDTAGQERFR-   75 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~i~D~~g~~~~~-   75 (211)
                      ++|+++|.||||||||+|+|++... .....++++.  ....+.+.+..               .++.++|+||...-. 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            7899999999999999999998874 3333333332  22233333321               358999999943211 


Q ss_pred             ---c---cccccccCccEEEEEEECC
Q 028292           76 ---T---LTSSYYRGAQGIIMVYDVT   95 (211)
Q Consensus        76 ---~---~~~~~~~~~d~~ilv~d~~   95 (211)
                         .   .....++++|++++|+|+.
T Consensus        82 ~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1   1223467899999999984

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.38  E-value=7.6e-12  Score=106.90  Aligned_cols=116  Identities=21%  Similarity=0.230  Sum_probs=78.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCC-------------CcceeeeEEE----EEEECCeEEEEEEEeCCCc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELS-------------PTIGVDFKIK----HVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~-------------~~~~~~~~~~----~~~~~~~~~~~~i~D~~g~   71 (211)
                      ++..+|+++|+.++|||||+.+|+...-  ....             ...|.++...    .+...+..+.++|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            4567899999999999999999986322  1000             0001111111    2223445788999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      .++.......+..+|++|+|+|+......... ..|....     ..+.|.++++||+|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~-----~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQAL-----RERVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHH-----HcCCCeEEEEECchhh
Confidence            99888888888999999999999876332221 2133222     2356789999999974

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.38  E-value=3.3e-11  Score=96.64  Aligned_cols=165  Identities=22%  Similarity=0.290  Sum_probs=116.0

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +....++++..|+|+.++|||.|++.+++..+ ..+..+....+....+...+...-+.+-|.+-. ........- ..+
T Consensus       419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c  496 (625)
T KOG1707|consen  419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC  496 (625)
T ss_pred             ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence            45556889999999999999999999999888 333344444455555555566666677777643 111111111 568


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHhCC-cEEEeccCCCCC
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFAREYGC-LFLECSAKTRVN  163 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  163 (211)
                      |++.++||.+++.+|......+.    .+......|+++|+.|+|+.+..+ ..... .+++.++++ +...+|.++.-.
T Consensus       497 Dv~~~~YDsS~p~sf~~~a~v~~----~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s  571 (625)
T KOG1707|consen  497 DVACLVYDSSNPRSFEYLAEVYN----KYFDLYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS  571 (625)
T ss_pred             eeEEEecccCCchHHHHHHHHHH----HhhhccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC
Confidence            99999999999999988766332    222247899999999999955432 33333 788999998 466677775333


Q ss_pred             HHHHHHHHHHHHHcCC
Q 028292          164 VEQCFEELVLKILDTP  179 (211)
Q Consensus       164 v~~~~~~i~~~~~~~~  179 (211)
                       .++|..|..++...+
T Consensus       572 -~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 -NELFIKLATMAQYPH  586 (625)
T ss_pred             -chHHHHHHHhhhCCC
Confidence             899999999887766

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.37  E-value=1e-11  Score=83.10  Aligned_cols=113  Identities=34%  Similarity=0.380  Sum_probs=78.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCC-CC-CcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +||+++|+.|+|||+|+.++....+.. +. ++.+                           +........+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777632 11 2222                           222334456678999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |+..+.++++.+   |...+.... +.+.|.++++||.|+.+...+..++.        ..++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~---~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK---NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH---hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999998765   445554433 56789999999999844333333322        345677888988874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>smart00275 G_alpha G protein alpha subunit

Probab=99.37  E-value=3.9e-11  Score=93.71  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=81.9

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                      ..+.+||.+|+...+..|..++.+++++|+|+|+++.          ..+.+....+...+... .-.++|++|++||.|
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~-~~~~~piil~~NK~D  262 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR-WFANTSIILFLNKID  262 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc-cccCCcEEEEEecHH
Confidence            5578999999999999999999999999999999973          24555555454444432 246799999999999


Q ss_pred             CCCC--------------c-ccCHHHHHHHHHH-----------hCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          131 KESE--------------R-VVSKKEGIDFARE-----------YGCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       131 ~~~~--------------~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      +...              . .-+.+.+..+...           ..+-++.++|.+..++..+|+.+...+...
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            7210              0 0123333333321           113457788898899999998888877654

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.36  E-value=9.2e-12  Score=96.14  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=90.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCC------C-----CCCCCcc--------------eeeeEEEEEEE---------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT------F-----EELSPTI--------------GVDFKIKHVAL---------   56 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~------~-----~~~~~~~--------------~~~~~~~~~~~---------   56 (211)
                      .+.+.|.|.|++|+|||||+..+...-      .     +...+..              +.+........         
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~  133 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV  133 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence            467899999999999999999875321      0     1111110              00001011110         


Q ss_pred             -----------CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEE
Q 028292           57 -----------GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV  125 (211)
Q Consensus        57 -----------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (211)
                                 +...+.+.|+||+|......   .....+|.++++.+....+.......    -+.      ...-++|
T Consensus       134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~------E~aDIiV  200 (332)
T PRK09435        134 ARKTRETMLLCEAAGYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK----GIM------ELADLIV  200 (332)
T ss_pred             HHHHHHHHHHHhccCCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh----hhh------hhhheEE
Confidence                       12236789999999653222   24667999999977544443333221    111      1223899


Q ss_pred             EeCCCCCCCcccC--HHHHHHHHH-------HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          126 GNKVDKESERVVS--KKEGIDFAR-------EYGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       126 ~nK~D~~~~~~~~--~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      +||+|+.......  ..+......       .+..+++.+||+++.|++++++.|.+.+.
T Consensus       201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            9999986543211  112222211       12358999999999999999999999865

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1e-11  Score=101.88  Aligned_cols=159  Identities=21%  Similarity=0.198  Sum_probs=104.2

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-C----CCCCcceeeeEEEE--------EEEC----CeEEEEEEEeCCC
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E----ELSPTIGVDFKIKH--------VALG----GKKMKLAIWDTAG   70 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~----~~~~~~~~~~~~~~--------~~~~----~~~~~~~i~D~~g   70 (211)
                      ...-+..-++|+|+..+|||-|+-.+-+... .    ......|.++....        +.-+    -.-.-+.++||||
T Consensus       470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg  549 (1064)
T KOG1144|consen  470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG  549 (1064)
T ss_pred             chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence            3445677899999999999999999987544 1    11122222322221        0000    1113478899999


Q ss_pred             cccccccccccccCccEEEEEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------cc-----
Q 028292           71 QERFRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------RV-----  136 (211)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~-----  136 (211)
                      ++.|..+.......+|.+|+|+|+...   ++.+++     ++++    ..+.|+||++||.|..-.      ..     
T Consensus       550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR----~rktpFivALNKiDRLYgwk~~p~~~i~~~l  620 (1064)
T KOG1144|consen  550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLR----MRKTPFIVALNKIDRLYGWKSCPNAPIVEAL  620 (1064)
T ss_pred             chhhhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHH----hcCCCeEEeehhhhhhcccccCCCchHHHHH
Confidence            999999999999999999999999875   333332     2222    578999999999996211      00     


Q ss_pred             ------cCHHH-------HHHHHHHhC---------------CcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          137 ------VSKKE-------GIDFAREYG---------------CLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       137 ------~~~~~-------~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                            +..+.       +.+|+ ..|               +.++++||.+|+||.+++-+|+++..
T Consensus       621 kkQ~k~v~~EF~~R~~~ii~efa-EQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  621 KKQKKDVQNEFKERLNNIIVEFA-EQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHH-HcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence                  00100       00111 111               24689999999999999999998764

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.5e-11  Score=103.07  Aligned_cols=118  Identities=19%  Similarity=0.203  Sum_probs=91.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----------------CCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------------EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQ   71 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~   71 (211)
                      .++..||.++|+..+|||||..+++...-                 .+.....|.++......+... .+.++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            56788999999999999999999985421                 111223356677777777667 489999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      -+|.......++-+|++|+|+|+...-..+.-.- |++..     ..++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa~-----~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQAD-----KYGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHHh-----hcCCCeEEEEECccccc
Confidence            9999999999999999999999988643332222 43333     57899999999999754

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.32  E-value=5.5e-11  Score=90.28  Aligned_cols=141  Identities=17%  Similarity=0.258  Sum_probs=77.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEEL-----------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------   73 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------   73 (211)
                      .++|+|+|.+|+|||||||.|++......           ..+.........+.-++..+.+.|+||||--.        
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            58999999999999999999998765111           11222333444555578889999999999110        


Q ss_pred             ----------cc-------ccccccc--cCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           74 ----------FR-------TLTSSYY--RGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        74 ----------~~-------~~~~~~~--~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                                +.       ...+..+  ...|++++.++.+... .-.++.  ++..+     ...+++|-|+.|+|...
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~--~mk~L-----s~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE--FMKRL-----SKRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH--HHHHH-----TTTSEEEEEESTGGGS-
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH--HHHHh-----cccccEEeEEecccccC
Confidence                      00       0000011  3569999999987642 222222  33333     25688999999999854


Q ss_pred             CcccC--HHHHHHHHHHhCCcEEEeccCC
Q 028292          134 ERVVS--KKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus       134 ~~~~~--~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                      ..+..  ...+.+.....++.+|......
T Consensus       157 ~~el~~~k~~i~~~l~~~~I~~f~f~~~~  185 (281)
T PF00735_consen  157 PEELQAFKQRIREDLEENNIKIFDFPEDD  185 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--S-------
T ss_pred             HHHHHHHHHHHHHHHHHcCceeecccccc
Confidence            33221  3334455566788777654433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.28  E-value=3.5e-11  Score=92.68  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK  139 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  139 (211)
                      .+.+.|+||+|.....   ...+..+|.++++.+....   +++.. +...+      .++|.++|+||+|+........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~~~~~  192 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQG-IKAGL------MEIADIYVVNKADGEGATNVTI  192 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHH-HHHHH------hhhccEEEEEcccccchhHHHH
Confidence            4678999999853222   2245667888887544333   33332 22111      3577799999999865432111


Q ss_pred             HH-----H-HHHHH---HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          140 KE-----G-IDFAR---EYGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       140 ~~-----~-~~~~~---~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      ..     . ..+..   .+..+++.+||+++.|+++++++|.+...
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            00     0 11111   12346999999999999999999998744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.28  E-value=2.5e-11  Score=94.53  Aligned_cols=159  Identities=17%  Similarity=0.167  Sum_probs=79.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcc---eeeeEEEEEEECCeEEEEEEEeCCCccccccc-----cccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTI---GVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----TSSY   81 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~   81 (211)
                      ..+++|+|+|.+|+|||||||.|.+-.. ++....+   .++.....+.. .....+.+||+||.-.....     -..-
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            4678999999999999999999976433 2222222   22223333322 12235899999994221111     1223


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC-------CCCcccCHHHHH----HHHH---
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK-------ESERVVSKKEGI----DFAR---  147 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~-------~~~~~~~~~~~~----~~~~---  147 (211)
                      +..-|.+|++.+..    |......+...+.    ..++|+++|-+|.|.       ..++....++..    +.+.   
T Consensus       112 ~~~yD~fiii~s~r----f~~ndv~La~~i~----~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  112 FYRYDFFIIISSER----FTENDVQLAKEIQ----RMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             GGG-SEEEEEESSS------HHHHHHHHHHH----HTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCC----CchhhHHHHHHHH----HcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            55679888776643    3222222444444    468999999999996       122223333322    2222   


Q ss_pred             -HhCC---cEEEeccCCCC--CHHHHHHHHHHHHHcC
Q 028292          148 -EYGC---LFLECSAKTRV--NVEQCFEELVLKILDT  178 (211)
Q Consensus       148 -~~~~---~~~~~Sa~~~~--~v~~~~~~i~~~~~~~  178 (211)
                       ..++   ++|-+|..+-.  +...+.+.|.+.+...
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence             2243   68889987644  5777777777766544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=5.8e-11  Score=92.65  Aligned_cols=158  Identities=17%  Similarity=0.093  Sum_probs=109.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +.|...|+-..|||||+..+.+...  .....-.|++.+............+.|+|.||++++-...-..+...|.+++|
T Consensus         1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv   80 (447)
T COG3276           1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV   80 (447)
T ss_pred             CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence            3578889999999999999998765  22233445555555555555566899999999998888777778889999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ++.++.-..+....  +..+..+   .-...++|++|+|..+...+.  .+++.....-.+.++|.+|+++|+|++++.+
T Consensus        81 V~~deGl~~qtgEh--L~iLdll---gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          81 VAADEGLMAQTGEH--LLILDLL---GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EeCccCcchhhHHH--HHHHHhc---CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            99976533333222  2222221   223358999999986543211  1122222222346889999999999999999


Q ss_pred             HHHHHHH
Q 028292          170 ELVLKIL  176 (211)
Q Consensus       170 ~i~~~~~  176 (211)
                      .|.+...
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9999885

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.2e-11  Score=90.27  Aligned_cols=143  Identities=19%  Similarity=0.160  Sum_probs=99.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC----------CC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD----------TF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (211)
                      .-+||..+|+.+.|||||..+++..          .+     .......|.++....+.++.....+-.+|+||+.+|-.
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK   90 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK   90 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence            5689999999999999999988642          11     12223456677777888777777888899999999988


Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCcccC---HHHHHHHHHHhCC-
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVS---KKEGIDFAREYGC-  151 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~-  151 (211)
                      .......+.|+.|+|+.+.+...-+....  ..+.+    .-++|. ++++||+|+.+..+..   ..+.+++...+++ 
T Consensus        91 NMItgAaqmDgAILVVsA~dGpmPqTrEH--iLlar----qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~  164 (394)
T COG0050          91 NMITGAAQMDGAILVVAATDGPMPQTREH--ILLAR----QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP  164 (394)
T ss_pred             HHhhhHHhcCccEEEEEcCCCCCCcchhh--hhhhh----hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence            77777788999999999998644333222  11222    245654 5557999997644332   3356677777765 


Q ss_pred             ----cEEEeccCC
Q 028292          152 ----LFLECSAKT  160 (211)
Q Consensus       152 ----~~~~~Sa~~  160 (211)
                          |++.-||..
T Consensus       165 gd~~Pii~gSal~  177 (394)
T COG0050         165 GDDTPIIRGSALK  177 (394)
T ss_pred             CCCcceeechhhh
Confidence                566666543

>cd01900 YchF YchF subfamily

Probab=99.26  E-value=7.7e-11  Score=88.84  Aligned_cols=79  Identities=22%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCe---------------EEEEEEEeCCCccccc---
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGK---------------KMKLAIWDTAGQERFR---   75 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~---   75 (211)
                      |+++|.||||||||+|+|++... .....++++  .....+.+.+.               ...+.++|+||...-.   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            57899999999999999999876 333333333  33333333332               2358999999943211   


Q ss_pred             -c---cccccccCccEEEEEEECC
Q 028292           76 -T---LTSSYYRGAQGIIMVYDVT   95 (211)
Q Consensus        76 -~---~~~~~~~~~d~~ilv~d~~   95 (211)
                       .   .....++++|++++|+|..
T Consensus        80 ~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          80 EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hHHHHHHHHHHHhCCEEEEEEeCc
Confidence             1   1223357899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.24  E-value=1.6e-11  Score=87.94  Aligned_cols=147  Identities=22%  Similarity=0.342  Sum_probs=91.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCccccc-----ccccccccCcc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFR-----TLTSSYYRGAQ   86 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~d   86 (211)
                      .-||+++|.+|+|||++-..+.......-..-.|-+++...-.+. -....+++||++|++.+-     ......+.+.+
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            458999999999999987777654432222223332333332221 123578999999988543     24456688999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCc--ccCHH----HHHHHHHHhCCcEEEeccC
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESER--VVSKK----EGIDFAREYGCLFLECSAK  159 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~--~~~~~----~~~~~~~~~~~~~~~~Sa~  159 (211)
                      ++++|||++..+-..++.. +..-+.... ..+..-+....+|+|+.+..  +....    ....+....++.+|++|..
T Consensus        84 vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            9999999998876666554 444333222 13566677888999995533  22222    2223333445677877766


Q ss_pred             C
Q 028292          160 T  160 (211)
Q Consensus       160 ~  160 (211)
                      +
T Consensus       163 D  163 (295)
T KOG3886|consen  163 D  163 (295)
T ss_pred             h
Confidence            5

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1.2e-10  Score=90.81  Aligned_cols=117  Identities=19%  Similarity=0.182  Sum_probs=86.2

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCC---------------------CCCCCCcceeeeEEEEEEECCeEEEEEEEe
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT---------------------FEELSPTIGVDFKIKHVALGGKKMKLAIWD   67 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   67 (211)
                      +..+.-...++-+|.+|||||-..|+--.                     +.+.....|..+.+..++++.....+++.|
T Consensus         8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLD   87 (528)
T COG4108           8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLD   87 (528)
T ss_pred             HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccC
Confidence            34566678899999999999999997311                     111112235556666666777778899999


Q ss_pred             CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      |||+++|..-....+..+|.+|.|+|+...-.-+..+  +....+    ..++||+=.+||.|.
T Consensus        88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcr----lR~iPI~TFiNKlDR  145 (528)
T COG4108          88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCR----LRDIPIFTFINKLDR  145 (528)
T ss_pred             CCCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHh----hcCCceEEEeecccc
Confidence            9999999988888888999999999998763222221  333333    689999999999996

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.23  E-value=1.8e-11  Score=85.78  Aligned_cols=54  Identities=19%  Similarity=0.062  Sum_probs=45.6

Q ss_pred             EEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          122 KLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       122 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      =++|+||.|+.+.-..+.+...+-++..+  .+++++|+++|+|++++++|+...+
T Consensus       145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            37899999998887777777777777654  7999999999999999999988754

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.22  E-value=2.2e-10  Score=80.91  Aligned_cols=62  Identities=24%  Similarity=0.315  Sum_probs=42.2

Q ss_pred             EEEEeCCCccc----ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 028292           63 LAIWDTAGQER----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV  129 (211)
Q Consensus        63 ~~i~D~~g~~~----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (211)
                      +.|+||||...    ....+..+++.+|++|+|.+++....-..... +.+...    .....+++|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~----~~~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLD----PDKSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHT----TTCSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhc----CCCCeEEEEEcCC
Confidence            68999999532    23556777899999999999998755444333 444443    3344488999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.22  E-value=1.6e-10  Score=94.99  Aligned_cols=121  Identities=15%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCc-ceeee-EEEEEEECCeEEEEEEEeCCCccccc-------cc---
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPT-IGVDF-KIKHVALGGKKMKLAIWDTAGQERFR-------TL---   77 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---   77 (211)
                      -+..++|+|+|.+|+||||++|.|++......... .+++. .......+  ...+.|+||||.....       .+   
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~  192 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSS  192 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHH
Confidence            34668999999999999999999998765222211 22221 12222333  3568999999954321       11   


Q ss_pred             cccccc--CccEEEEEEECCChhcH-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           78 TSSYYR--GAQGIIMVYDVTRRDTF-TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        78 ~~~~~~--~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      ...++.  ..|++|+|..+...... ++. ..+..+...+...-=..+|||+|..|..+
T Consensus       193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~-~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDL-PLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHhcCCCCEEEEEEeCCCccccHHHH-HHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            111222  57999999887643332 221 11222222222122245788999999865

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.20  E-value=8.2e-12  Score=94.11  Aligned_cols=55  Identities=24%  Similarity=0.154  Sum_probs=41.4

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHH
Q 028292          120 CIKLLVGNKVDKESERVVSKKEGIDFAREY--GCLFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       120 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      .+-++|+||+|+.+......+...+..+..  .++++.+||++|+|++++++||..+
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            556899999999654333344444444443  4789999999999999999999874

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.5e-09  Score=83.64  Aligned_cols=83  Identities=23%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC----------------CeEEEEEEEeCCCc----
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG----------------GKKMKLAIWDTAGQ----   71 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~----   71 (211)
                      .+++.++|.||||||||.|.++.... ...+|....+...-.+.+.                -....+.|+|.+|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            37899999999999999999998764 2333333222222222221                12356899999982    


Q ss_pred             ---ccccccccccccCccEEEEEEECC
Q 028292           72 ---ERFRTLTSSYYRGAQGIIMVYDVT   95 (211)
Q Consensus        72 ---~~~~~~~~~~~~~~d~~ilv~d~~   95 (211)
                         +.+.......++++|+++.|+|+.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               223334455678999999999986

>smart00053 DYNc Dynamin, GTPase

Probab=99.17  E-value=2.9e-10  Score=84.14  Aligned_cols=69  Identities=20%  Similarity=0.214  Sum_probs=43.9

Q ss_pred             EEEEEEeCCCccc-------------cccccccccc-CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292           61 MKLAIWDTAGQER-------------FRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG  126 (211)
Q Consensus        61 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (211)
                      ..++++|+||-..             ...+...++. ..+++++|+|++....-..... +.+.+.    ..+.|+++|+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld----~~~~rti~Vi  199 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD----PQGERTIGVI  199 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH----HcCCcEEEEE
Confidence            4588999999532             1123455666 4468899999875433222222 333333    4679999999


Q ss_pred             eCCCCCCC
Q 028292          127 NKVDKESE  134 (211)
Q Consensus       127 nK~D~~~~  134 (211)
                      ||+|..+.
T Consensus       200 TK~D~~~~  207 (240)
T smart00053      200 TKLDLMDE  207 (240)
T ss_pred             ECCCCCCc
Confidence            99998654

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.10  E-value=3.6e-10  Score=90.21  Aligned_cols=159  Identities=25%  Similarity=0.415  Sum_probs=117.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+|+.|+|..++|||.|+++++.+.+. ...+.-|  ....++.+++....+.+.|-+|...     -.|....|++|+
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence            4589999999999999999999999883 3333333  5566677788887888888877322     234456899999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHH-hCCcEEEeccCCCCCHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~  167 (211)
                      ||...+..+|+.+..+.. .+..+.....+|+++++++.-..  ..+.+......+++.+ ..+.+|+..+.+|.++...
T Consensus       102 vf~~~d~~s~q~v~~l~~-~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAH-EMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EEEeccccCHHHHHHHHh-hcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence            999999999999887444 44444436778888888765542  2344455555555444 4579999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |+.+...+...
T Consensus       181 f~~~~~k~i~~  191 (749)
T KOG0705|consen  181 FQEVAQKIVQL  191 (749)
T ss_pred             HHHHHHHHHHH
Confidence            99998887654

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=1.2e-09  Score=83.70  Aligned_cols=126  Identities=20%  Similarity=0.267  Sum_probs=81.3

Q ss_pred             CCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeE------E-------------
Q 028292            3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKK------M-------------   61 (211)
Q Consensus         3 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~-------------   61 (211)
                      ...++.+.....-|+++|+...||||+|+.|+...+  ....+.+.+++....+.-+.+.      .             
T Consensus        48 p~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~  127 (532)
T KOG1954|consen   48 PALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNK  127 (532)
T ss_pred             ccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhh
Confidence            345667788888999999999999999999999888  3444444444444443322111      0             


Q ss_pred             --------------------EEEEEeCCCcccc-----------cccccccccCccEEEEEEECCChhcHHHHHHHHHHH
Q 028292           62 --------------------KLAIWDTAGQERF-----------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKE  110 (211)
Q Consensus        62 --------------------~~~i~D~~g~~~~-----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~  110 (211)
                                          .++|+||||.-.-           .....-+...+|.+|++||+..-+--++    +...
T Consensus       128 FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdE----f~~v  203 (532)
T KOG1954|consen  128 FGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE----FKRV  203 (532)
T ss_pred             hHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHH----HHHH
Confidence                                3789999993221           2223344578999999999865433222    2223


Q ss_pred             HHhhcCCCCCcEEEEEeCCCCCC
Q 028292          111 IDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus       111 ~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      +.... ...--+-||+||+|..+
T Consensus       204 i~aLk-G~EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  204 IDALK-GHEDKIRVVLNKADQVD  225 (532)
T ss_pred             HHHhh-CCcceeEEEeccccccC
Confidence            33333 33344678899999843

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.07  E-value=4e-10  Score=79.61  Aligned_cols=57  Identities=26%  Similarity=0.367  Sum_probs=47.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (211)
                      ...++|+++|.||+|||||+|+|.+.......+.+|++.....+.++.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            345899999999999999999999988767777888887766666543   578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=4e-09  Score=76.33  Aligned_cols=156  Identities=18%  Similarity=0.178  Sum_probs=91.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-C---------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---cccc--
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-E---------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---RFRT--   76 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---~~~~--   76 (211)
                      -.|+|.|+|.+|.|||||+|.+...+. .         .+..+.........+.-++....++++||||--   ..+.  
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            458999999999999999999986544 1         122222333334444556777889999999911   1111  


Q ss_pred             ---------------------ccccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-
Q 028292           77 ---------------------LTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE-  132 (211)
Q Consensus        77 ---------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-  132 (211)
                                           .....+.  ..+++++.+..+... +..+.-.++..+.     .-+.++-|+-|+|.. 
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt-----~vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLT-----EVVNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHh-----hhheeeeeEeeccccc
Confidence                                 1122233  457788877776532 1111111222221     335567778899963 


Q ss_pred             -CCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292          133 -SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus       133 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                       +++..-.+.+++....+++.+++-.+.+...-+..++.-++
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR  240 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR  240 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence             33334445566677788898888877765544444444333

>cd01859 MJ1464 MJ1464

Probab=99.06  E-value=4.7e-10  Score=78.29  Aligned_cols=96  Identities=15%  Similarity=0.093  Sum_probs=66.2

Q ss_pred             ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcE
Q 028292           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLF  153 (211)
Q Consensus        74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      |+++++..+.++|++|+|+|++++...... . +...+.    ..++|+++|+||+|+.+....  .....+....+.++
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~   73 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPV   73 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcE
Confidence            345667778889999999999886433221 1 222222    346899999999998533221  11112334456789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHc
Q 028292          154 LECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       154 ~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      +.+||+++.|++++++.+.+.+..
T Consensus        74 ~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          74 VYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEEEccccccHHHHHHHHHHHHhh
Confidence            999999999999999999887753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.06  E-value=2.3e-08  Score=72.99  Aligned_cols=111  Identities=20%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-------RTLTSSYYR   83 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   83 (211)
                      .--+|+++|.|.+|||||+..++.-+. ...+..+..+.-.-.+.+++.  .+++.|.||.-+-       ....-...+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence            456999999999999999999987664 222333333444445555554  4777899993221       233445567


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEE
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL  124 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~iv  124 (211)
                      .+|.++.|.|++..+.-..+.+.-+..+....++..+.+.+
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~  179 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYF  179 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEE
Confidence            89999999999987654444443455555555333333333

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=1.1e-08  Score=78.94  Aligned_cols=142  Identities=19%  Similarity=0.260  Sum_probs=88.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCC----------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------c-
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFE----------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------F-   74 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~-   74 (211)
                      .+++.++|+.|.|||||||.|+...+.          ....+.....+...+.-++..+.++++||||.-+       | 
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            489999999999999999999877541          1122333344444555567788999999999110       0 


Q ss_pred             -----------------ccccccccc--CccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           75 -----------------RTLTSSYYR--GAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        75 -----------------~~~~~~~~~--~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                                       ....+..+.  ..|+++|.+..+.. -.-.++.  ++..+     ...+.+|-|+.|+|....
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~--~Mk~l-----~~~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE--FMKKL-----SKKVNLIPVIAKADTLTK  173 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH--HHHHH-----hccccccceeeccccCCH
Confidence                             111222233  57899999987654 1222221  22222     356778888889998544


Q ss_pred             cccC--HHHHHHHHHHhCCcEEEeccCCC
Q 028292          135 RVVS--KKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      .++.  ...+.+-...+++++|..+....
T Consensus       174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  174 DELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            3322  33444555667888777766554

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.05  E-value=2.1e-10  Score=86.26  Aligned_cols=154  Identities=18%  Similarity=0.138  Sum_probs=93.6

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTS   79 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~   79 (211)
                      .....-|.|+|.+|+||||||+.|+.... +...-....+.+....+... +..+.+.||-|.-         .|+....
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            44556789999999999999999996554 22222222222222222222 2356778999821         1222222


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc----EEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI----KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLE  155 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                       -+..+|.++-|.|+++|.-.+.... .+..+.... -...|    ++=|-||.|..+.....        .+  -..+.
T Consensus       254 -eVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~ig-v~~~pkl~~mieVdnkiD~e~~~~e~--------E~--n~~v~  320 (410)
T KOG0410|consen  254 -EVAEADLLLHVVDISHPNAEEQRET-VLHVLNQIG-VPSEPKLQNMIEVDNKIDYEEDEVEE--------EK--NLDVG  320 (410)
T ss_pred             -HHhhcceEEEEeecCCccHHHHHHH-HHHHHHhcC-CCcHHHHhHHHhhccccccccccCcc--------cc--CCccc
Confidence             2578999999999999964444333 444444433 22233    34456888864432211        11  12677


Q ss_pred             eccCCCCCHHHHHHHHHHHHHc
Q 028292          156 CSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       156 ~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      +||.+|+|++++...+-..+..
T Consensus       321 isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccccCccHHHHHHHHHHHhhh
Confidence            9999999999999988877654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.8e-09  Score=88.20  Aligned_cols=116  Identities=25%  Similarity=0.313  Sum_probs=82.6

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCC----------CCc------ceeeeEEEEEE-----ECCeEEEEEEEeC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL----------SPT------IGVDFKIKHVA-----LGGKKMKLAIWDT   68 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~------~~~~~~~~~~~-----~~~~~~~~~i~D~   68 (211)
                      .....+|.++|+-++|||+|+..|.....+..          ..+      .|..+.....+     ..+..+-++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            45778999999999999999999986543111          111      12222222222     2466688999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        69 ~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      ||+-.+.......++.+|++++++|+...-++..-.- +...+     ....|+++|+||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikhai-----q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHAI-----QNRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHHH-----hccCcEEEEEehhHH
Confidence            9999998888888999999999999998766533211 22222     577999999999996

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.05  E-value=5.3e-10  Score=76.69  Aligned_cols=54  Identities=24%  Similarity=0.344  Sum_probs=44.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      +++++|.+|+|||||+|++++..........|.+.....+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999887755666667777766666655   4789999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=99.05  E-value=7.1e-10  Score=77.48  Aligned_cols=56  Identities=21%  Similarity=0.313  Sum_probs=44.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (211)
                      ..++|+++|.+|+|||||+|+|.+.......+..|++.....+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            46789999999999999999999887767777778776655554432   367899998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.04  E-value=1.4e-09  Score=83.60  Aligned_cols=88  Identities=20%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                      ...++|.+++|+|+.++..+......|+..+.    ..++|+++|+||+|+.+... ............+.+++++||++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~  151 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKE  151 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCC
Confidence            35899999999999988776665444655544    36799999999999953322 22233445566788999999999


Q ss_pred             CCCHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVL  173 (211)
Q Consensus       161 ~~~v~~~~~~i~~  173 (211)
                      +.|+++++..+..
T Consensus       152 g~gi~~L~~~l~g  164 (298)
T PRK00098        152 GEGLDELKPLLAG  164 (298)
T ss_pred             CccHHHHHhhccC
Confidence            9999999887743

>cd01855 YqeH YqeH

Probab=99.04  E-value=1.9e-09  Score=77.71  Aligned_cols=94  Identities=19%  Similarity=0.127  Sum_probs=66.3

Q ss_pred             ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HH
Q 028292           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----RE  148 (211)
Q Consensus        74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~  148 (211)
                      +..++..++..+|++++|+|++++...      |...+...  ..++|+++|+||+|+.+.. ........+.     ..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~--~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~   94 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLF--GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHh--cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhh
Confidence            467788889999999999999886421      11111111  3568999999999986433 2233333333     22


Q ss_pred             hCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          149 YGC---LFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       149 ~~~---~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      .+.   .++.+||+++.|+++++++|.+.+.
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            333   6899999999999999999998875

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.03  E-value=1.7e-10  Score=84.83  Aligned_cols=151  Identities=19%  Similarity=0.200  Sum_probs=83.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCccee----------------eeEEEEEEEC-------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSPTIGV----------------DFKIKHVALG-------   57 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~~~~~----------------~~~~~~~~~~-------   57 (211)
                      +.+.|.+-|+||+|||||+..|...-.           ++.+|..|-                ..+...+--.       
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            568999999999999999999974210           122222210                1111111110       


Q ss_pred             -----------CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292           58 -----------GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG  126 (211)
Q Consensus        58 -----------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (211)
                                 ...+.+.|++|.|-=   +.--....-+|.+++|.-..-.+..+-++.-++..          +=++|+
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvG---QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi~vV  174 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVG---QSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADIFVV  174 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSS---THHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCC---ccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccEEEE
Confidence                       112456777887621   11112234579999999988776655544433332          237999


Q ss_pred             eCCCCCCCcccCHH--HHHHHHHH----hCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          127 NKVDKESERVVSKK--EGIDFARE----YGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       127 nK~D~~~~~~~~~~--~~~~~~~~----~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      ||+|.........+  ....+...    +..+++.+||.+++|++++++.|.+..
T Consensus       175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            99995333221111  11112111    235899999999999999999998764

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.03  E-value=2.6e-09  Score=79.81  Aligned_cols=152  Identities=17%  Similarity=0.204  Sum_probs=91.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCcceeee----------------EEEEEE---------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSPTIGVDF----------------KIKHVA---------   55 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~~~~~~~----------------~~~~~~---------   55 (211)
                      +...|.+-|.||+|||||+..|...-.           +..+|.+|-.+                ......         
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            557899999999999999999964211           22222222110                000000         


Q ss_pred             ---------ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292           56 ---------LGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG  126 (211)
Q Consensus        56 ---------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (211)
                               ++...+.+.|++|.|--..+   -....-+|.+++|.-..-.+..+-++.-++.+-          =++|+
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia----------Di~vI  196 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA----------DIIVI  196 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh----------heeeE
Confidence                     01223457888888732222   223345799999888877777766655333322          37899


Q ss_pred             eCCCCCCCcccCHH--HHHHHHH------HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          127 NKVDKESERVVSKK--EGIDFAR------EYGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       127 nK~D~~~~~~~~~~--~~~~~~~------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      ||.|.........+  .+.++..      .+..+++.+||..|+|++++++.|.+...
T Consensus       197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            99996433221111  1111111      13458999999999999999999988764

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.02  E-value=1.3e-08  Score=78.09  Aligned_cols=137  Identities=18%  Similarity=0.286  Sum_probs=84.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CC----------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---ccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EE----------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---RTL   77 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~~~   77 (211)
                      -.++|+++|+.|.|||||+|.|++... ..          ..++.....+...+.-++..+.++++||||--++   ...
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            568999999999999999999998743 11          2233334455555555777889999999991100   111


Q ss_pred             c----------------------cc-cc--cCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           78 T----------------------SS-YY--RGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        78 ~----------------------~~-~~--~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      |                      +. .+  ...|++++.+..+... +..++.  .+..+     ...+.+|-|+.|+|.
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe--~Mk~l-----s~~vNlIPVI~KaD~  174 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE--AMKRL-----SKRVNLIPVIAKADT  174 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH--HHHHH-----hcccCeeeeeecccc
Confidence            1                      11 11  3468899988876542 222222  23333     255778888899998


Q ss_pred             CCCccc--CHHHHHHHHHHhCCcEEE
Q 028292          132 ESERVV--SKKEGIDFAREYGCLFLE  155 (211)
Q Consensus       132 ~~~~~~--~~~~~~~~~~~~~~~~~~  155 (211)
                      .-..+.  -.+.+.+....+++++|.
T Consensus       175 lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         175 LTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            443322  233444555667888874

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.01  E-value=7.9e-10  Score=81.52  Aligned_cols=157  Identities=18%  Similarity=0.099  Sum_probs=99.4

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRT   76 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~   76 (211)
                      +..+..+++++|.+|+|||+||+.++..+.  ....+..|.+.....+.+..   .+.++|.||          -.++..
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhH
Confidence            346779999999999999999999998776  33444666666666666544   567789999          122333


Q ss_pred             ccccccc---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------cc-----CHHHH
Q 028292           77 LTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------VV-----SKKEG  142 (211)
Q Consensus        77 ~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------~~-----~~~~~  142 (211)
                      +...++.   +.--+++++|++.+-.--+..  ..+++.    ..++|+.+|+||||.....      ..     .....
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~--~i~~~g----e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNP--EIAWLG----ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChH--HHHHHh----hcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            3334432   334567777877652221111  333444    5789999999999973211      11     11112


Q ss_pred             HHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 028292          143 IDFAREYGCLFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       143 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      .+.......++..+|+.++.|++.+.-.|.+.
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehhhh
Confidence            22222334577789999999998877666543

>PRK12289 GTPase RsgA; Reviewed

Probab=99.00  E-value=2.8e-09  Score=83.32  Aligned_cols=92  Identities=21%  Similarity=0.188  Sum_probs=65.5

Q ss_pred             ccccccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEE
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFL  154 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      .+.+..+.++|.+++|+|+.++. .+..+.. |+....    ..++|+++|+||+|+......  +........++..++
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~  153 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPL  153 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEE
Confidence            34445688999999999998875 3333333 444442    467999999999999543221  222333456788999


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028292          155 ECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      .+||+++.|++++++.+...
T Consensus       154 ~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        154 FISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEcCCCCCHHHHhhhhccc
Confidence            99999999999999888654

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.97  E-value=3.1e-08  Score=76.49  Aligned_cols=128  Identities=16%  Similarity=0.204  Sum_probs=83.8

Q ss_pred             eEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcH-------HHH---HHHHHHHHHhhcCCC
Q 028292           49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF-------TNL---ADIWAKEIDLYSTNQ  118 (211)
Q Consensus        49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-------~~~---~~~~~~~~~~~~~~~  118 (211)
                      +....+.+.+  ..+.+.|.+|+...+.-|..++.+++++|+|+++++.+..       ..+   ...+...+. ...=.
T Consensus       185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n-~~~F~  261 (354)
T KOG0082|consen  185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN-NKWFA  261 (354)
T ss_pred             eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc-Ccccc
Confidence            4444444444  5677889999999999999999999999999999874321       111   121222222 12235


Q ss_pred             CCcEEEEEeCCCCCCC--------------cc-cCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHH
Q 028292          119 DCIKLLVGNKVDKESE--------------RV-VSKKEGIDFARE----------YGCLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus       119 ~~p~ivv~nK~D~~~~--------------~~-~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                      +.++|+.+||.|+-++              .. -..+++..+...          ..+-+..+.|.+-.+|+.+|..+.+
T Consensus       262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d  341 (354)
T KOG0082|consen  262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD  341 (354)
T ss_pred             cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence            6899999999998221              11 233444443322          1234566788999999999999998


Q ss_pred             HHHcCC
Q 028292          174 KILDTP  179 (211)
Q Consensus       174 ~~~~~~  179 (211)
                      .+....
T Consensus       342 ~Ii~~n  347 (354)
T KOG0082|consen  342 TIIQNN  347 (354)
T ss_pred             HHHHHH
Confidence            887543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.94  E-value=6.4e-09  Score=79.62  Aligned_cols=88  Identities=16%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             cccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292           79 SSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ...+.++|.+++|+|+.++. ++..+.. |+..+.    ..++|+++|+||+|+.+...  ...........+.+++.+|
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~----~~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vS  145 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAE----AAGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVS  145 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHH----HcCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEE
Confidence            44578999999999999987 7776665 555444    35789999999999955421  1222333455678999999


Q ss_pred             cCCCCCHHHHHHHHHH
Q 028292          158 AKTRVNVEQCFEELVL  173 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~  173 (211)
                      |+++.|+++++.+|..
T Consensus       146 A~~g~gi~~L~~~L~~  161 (287)
T cd01854         146 AKTGEGLDELREYLKG  161 (287)
T ss_pred             CCCCccHHHHHhhhcc
Confidence            9999999999888764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01856 YlqF YlqF

Probab=98.91  E-value=4.2e-09  Score=74.63  Aligned_cols=57  Identities=23%  Similarity=0.350  Sum_probs=46.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ..++++++|.+|+|||||++++.+..+....+..++++....+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4579999999999999999999988775666667777777766664   35789999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.90  E-value=1.5e-08  Score=79.28  Aligned_cols=88  Identities=19%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHhCCcEEEeccCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                      ..++|.+++|++.....++..+.. |+....    ..++|.++|+||+|+.+... .............+.+++++||++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t  192 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT  192 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            467899999999987788877766 544443    46789999999999965432 112233344456788999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVLK  174 (211)
Q Consensus       161 ~~~v~~~~~~i~~~  174 (211)
                      +.|+++++++|...
T Consensus       193 g~GideL~~~L~~k  206 (347)
T PRK12288        193 GEGLEELEAALTGR  206 (347)
T ss_pred             CcCHHHHHHHHhhC
Confidence            99999999988653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.90  E-value=6.4e-09  Score=79.69  Aligned_cols=58  Identities=28%  Similarity=0.399  Sum_probs=48.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ...++|+++|.||||||||+|+|.+.......+.+|.+.....+.++.   .+.++||||-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            456899999999999999999999987767777888877776666544   4789999995

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.90  E-value=5e-09  Score=79.86  Aligned_cols=58  Identities=24%  Similarity=0.384  Sum_probs=47.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ...++|+|+|.||+|||||+|+|.+.........+|++.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            356899999999999999999999887666677778777766666543   4689999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01859 MJ1464 MJ1464

Probab=98.87  E-value=7.4e-09  Score=72.23  Aligned_cols=56  Identities=25%  Similarity=0.302  Sum_probs=44.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (211)
                      ...+++++|.+++|||||++++.+.....+.++.|.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999877666777777765544444333   588999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.87  E-value=4.5e-09  Score=81.55  Aligned_cols=57  Identities=25%  Similarity=0.329  Sum_probs=50.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ..++++|+|.||||||||||+|.+.......+.+|.|.....+.++..   +.++||||-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            457899999999999999999999988888888899888888887775   788999994

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.3e-09  Score=84.73  Aligned_cols=121  Identities=18%  Similarity=0.188  Sum_probs=95.3

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (211)
                      +...+.-+|.++.+-.+||||.-.|++...-                 -......|.++....+++++.+.+++++||||
T Consensus        32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg  111 (753)
T KOG0464|consen   32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG  111 (753)
T ss_pred             CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence            4445667999999999999999999975321                 11123346788888999999999999999999


Q ss_pred             cccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      +-+|+-..+.+++-.|+++.|||.+..-.-+.+.. |.+.-     +.++|.+..+||+|....
T Consensus       112 hvdf~leverclrvldgavav~dasagve~qtltv-wrqad-----k~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQAD-----KFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             cceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehhcc-----ccCCchhhhhhhhhhhhh
Confidence            99999999999999999999999998754444444 54332     578999999999997443

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.85  E-value=3.5e-08  Score=72.30  Aligned_cols=88  Identities=22%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCcc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRGAQ   86 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d   86 (211)
                      -++.++|.|.+|||||+..|.+.. .+.....+++.....-.+..+...+++.|.||.-+       -........+.++
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn  138 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN  138 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence            389999999999999999998654 45555556666655555555666788999999322       1234455567789


Q ss_pred             EEEEEEECCChhcHHH
Q 028292           87 GIIMVYDVTRRDTFTN  102 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~  102 (211)
                      .+++|.|+..|-+-..
T Consensus       139 li~~vld~~kp~~hk~  154 (358)
T KOG1487|consen  139 LIFIVLDVLKPLSHKK  154 (358)
T ss_pred             EEEEEeeccCcccHHH
Confidence            9999999987644333

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.83  E-value=2.1e-08  Score=79.22  Aligned_cols=95  Identities=22%  Similarity=0.236  Sum_probs=68.6

Q ss_pred             cccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HH
Q 028292           71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID----FA  146 (211)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~  146 (211)
                      ++.+..+...+...++++++|+|+.+....      |...+....  .+.|+++|+||+|+.+. ....+...+    ++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~--~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~  120 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFV--GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRA  120 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHh--CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHH
Confidence            456777778888899999999999876421      333333332  36799999999999653 233333333    45


Q ss_pred             HHhCC---cEEEeccCCCCCHHHHHHHHHHH
Q 028292          147 REYGC---LFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       147 ~~~~~---~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      ...++   .++.+||+++.|++++++.|.+.
T Consensus       121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            56676   48999999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1e-07  Score=72.48  Aligned_cols=143  Identities=19%  Similarity=0.122  Sum_probs=99.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC----------CC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD----------TF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (211)
                      .-+||.-+|+...|||||-.+++.-          ++     .......|.++....+.++.....+-=.|+||+.+|-.
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            4578999999999999999888631          11     12223456677877887777776777789999999988


Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc---cCHHHHHHHHHHhCC--
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VSKKEGIDFAREYGC--  151 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~--  151 (211)
                      .......+.|+.|+|+.++|...-+.-..  +.+.++.   .-..+++.+||.|+.++.+   .-.-+++++..++++  
T Consensus       133 NMItGaaqMDGaILVVaatDG~MPQTrEH--lLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDGPMPQTREH--LLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HhhcCccccCceEEEEEcCCCCCcchHHH--HHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            87777889999999999999755443322  2222321   2244566689999974432   224456677777764  


Q ss_pred             ---cEEEeccC
Q 028292          152 ---LFLECSAK  159 (211)
Q Consensus       152 ---~~~~~Sa~  159 (211)
                         |++.-||.
T Consensus       208 d~~PvI~GSAL  218 (449)
T KOG0460|consen  208 DNTPVIRGSAL  218 (449)
T ss_pred             CCCCeeecchh
Confidence               67766653

>cd01855 YqeH YqeH

Probab=98.81  E-value=8.9e-09  Score=74.24  Aligned_cols=55  Identities=27%  Similarity=0.434  Sum_probs=43.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (211)
                      ..+++++|.+|+|||||+|+|.+...        ......+|++.....+.++.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            46899999999999999999997543        23445567777777777654   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=3e-08  Score=71.98  Aligned_cols=167  Identities=20%  Similarity=0.240  Sum_probs=104.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-cc--cccccccCccEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-RT--LTSSYYRGAQGIIM   90 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~--~~~~~~~~~d~~il   90 (211)
                      .+|+++|...+|||++-........+...-....+-....-++.+.-+.+.+||.||+-.+ +.  -....++++.++|+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif  107 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF  107 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence            5699999999999998777766554333222222222222233444567899999997543 22  24556788999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-ccCH-----HHHHHHHHHhC-----CcEEEeccC
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER-VVSK-----KEGIDFAREYG-----CLFLECSAK  159 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~-----~~~~~~~~~~~-----~~~~~~Sa~  159 (211)
                      |+|+.+.. .+.+........+.+.-++++.+-|.++|.|..... .+..     ....+...+.+     +.|+-+| .
T Consensus       108 vIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-I  185 (347)
T KOG3887|consen  108 VIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-I  185 (347)
T ss_pred             EEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-e
Confidence            99998752 233333344445566668899999999999974422 2221     11222223333     2445444 4


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCcc
Q 028292          160 TRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      ..-.+-+.|..+++.+..+.+..
T Consensus       186 yDHSIfEAFSkvVQkLipqLptL  208 (347)
T KOG3887|consen  186 YDHSIFEAFSKVVQKLIPQLPTL  208 (347)
T ss_pred             cchHHHHHHHHHHHHHhhhchhH
Confidence            55678888999888887665544

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.79  E-value=4.4e-07  Score=62.02  Aligned_cols=148  Identities=19%  Similarity=0.234  Sum_probs=86.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCC-Ccccc----------------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA-GQERF----------------   74 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~~----------------   74 (211)
                      ..++|.+-|+||||||||+.++...-........|  +...++.-++...-+.++|+. |...+                
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V   81 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV   81 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence            46899999999999999999998544322222333  555566667777778888877 31110                


Q ss_pred             ---------cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 028292           75 ---------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF  145 (211)
Q Consensus        75 ---------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  145 (211)
                               ....+..+..+|++  ++|--.+..+..-  .+...+.... +.++|++.++++.+.       ...+.++
T Consensus        82 ~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~--~f~~~ve~vl-~~~kpliatlHrrsr-------~P~v~~i  149 (179)
T COG1618          82 NVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKSK--KFREAVEEVL-KSGKPLIATLHRRSR-------HPLVQRI  149 (179)
T ss_pred             eHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhccH--HHHHHHHHHh-cCCCcEEEEEecccC-------ChHHHHh
Confidence                     01122233455654  4565555443221  1444554444 678888888887763       1122222


Q ss_pred             HHHhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          146 AREYGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       146 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                       ...+..+..   .+.+|-+.+++.++..+..
T Consensus       150 -k~~~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         150 -KKLGGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             -hhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence             333333332   4556666888888877654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.78  E-value=1.6e-08  Score=70.43  Aligned_cols=57  Identities=23%  Similarity=0.297  Sum_probs=43.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (211)
                      ....+|+++|.+|+|||||+|.+.+..........+++.....+.++   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence            35688999999999999999999987754455555665555555543   3588999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.71  E-value=2.4e-08  Score=79.52  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      .......+.|.++|.|||||||+||.|.+.+...++.|+|.+.+..++.++.   .+.++|+||.
T Consensus       308 ~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  308 GERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             CcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            3334447999999999999999999999999988999999988888887665   5788999994

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=4.1e-08  Score=79.67  Aligned_cols=123  Identities=17%  Similarity=0.179  Sum_probs=92.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-----------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (211)
                      .+.-+|.+.-+-.+||||+-++++...-                 .+.....|.+.......+.+..+.++++||||+-+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            4566899999999999999999985421                 11122334556666666677789999999999999


Q ss_pred             ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK  139 (211)
Q Consensus        74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  139 (211)
                      |.-.....++-.|++|+++|....-.-+.... |++..     ..++|.+..+||+|.........
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV-~rQ~~-----ry~vP~i~FiNKmDRmGa~~~~~  176 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETV-WRQMK-----RYNVPRICFINKMDRMGASPFRT  176 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHH-HHHHH-----hcCCCeEEEEehhhhcCCChHHH
Confidence            99888999999999999999987644333333 44433     47899999999999877655433

>cd01858 NGP_1 NGP-1

Probab=98.68  E-value=1e-07  Score=66.51  Aligned_cols=91  Identities=13%  Similarity=0.016  Sum_probs=58.2

Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                      .+.++|++++|+|++++.....  ..+...+.. . ..++|+++|+||+|+.++... ......+...+....+.+||+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~-~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKK-E-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHh-c-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            4678999999999998742211  112233322 1 356899999999999543221 1112222222223357899999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVLKIL  176 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~  176 (211)
                      +.|++++++.+.+.+.
T Consensus        80 ~~~~~~L~~~l~~~~~   95 (157)
T cd01858          80 PFGKGSLIQLLRQFSK   95 (157)
T ss_pred             cccHHHHHHHHHHHHh
Confidence            9999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.67  E-value=1.2e-07  Score=66.14  Aligned_cols=84  Identities=17%  Similarity=0.103  Sum_probs=55.3

Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++++|+|+.++.+.....  +..   ......++|+++|+||+|+.+...+ .+....+....+..++.+||+++.|++
T Consensus         1 Dvvl~VvD~~~p~~~~~~~--i~~---~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~   74 (155)
T cd01849           1 DVILEVLDARDPLGTRSPD--IER---VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIE   74 (155)
T ss_pred             CEEEEEEeccCCccccCHH--HHH---HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence            6899999999886554221  111   1111467999999999998443211 111112322334568999999999999


Q ss_pred             HHHHHHHHHH
Q 028292          166 QCFEELVLKI  175 (211)
Q Consensus       166 ~~~~~i~~~~  175 (211)
                      ++.+.+.+..
T Consensus        75 ~L~~~i~~~~   84 (155)
T cd01849          75 KKESAFTKQT   84 (155)
T ss_pred             hHHHHHHHHh
Confidence            9999988764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.2e-07  Score=78.79  Aligned_cols=119  Identities=23%  Similarity=0.240  Sum_probs=85.4

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      +.+.+..-+|+++.+...|||||...|+...-               .+...+.|.+.....+..--..+.++++|+||+
T Consensus         3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh   82 (887)
T KOG0467|consen    3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH   82 (887)
T ss_pred             CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence            45566778999999999999999999985421               222334455555555655567788999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      -+|.+.......-+|++++++|+...-.-+...     .+++-. ..+.-.++|+||+|.
T Consensus        83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~-----vlrq~~-~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-----VLRQAW-IEGLKPILVINKIDR  136 (887)
T ss_pred             cchhhhhhhhhhhcCCcEEEEeeccccchhHHH-----HHHHHH-HccCceEEEEehhhh
Confidence            999999988888999999999997653222211     111111 244556888999993

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.65  E-value=4.9e-07  Score=69.97  Aligned_cols=158  Identities=14%  Similarity=0.047  Sum_probs=94.7

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CC--------------CcceeeeEEEEEEEC----------------
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LS--------------PTIGVDFKIKHVALG----------------   57 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~--------------~~~~~~~~~~~~~~~----------------   57 (211)
                      .....+.|.++|+.+.|||||+-.|..+..+. ..              .....+.....+=++                
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            34567899999999999999999998665411 00              000111111111111                


Q ss_pred             -----CeEEEEEEEeCCCccccccc--ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           58 -----GKKMKLAIWDTAGQERFRTL--TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        58 -----~~~~~~~i~D~~g~~~~~~~--~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                           ...--+.|+|+.|++.|-..  ...+-.+.|-.++++.+++..+--.-.  .+-.+.    ..+.|++++.+|+|
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkE--HLgi~~----a~~lPviVvvTK~D  266 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKE--HLGIAL----AMELPVIVVVTKID  266 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhH--hhhhhh----hhcCCEEEEEEecc
Confidence                 11124689999999988543  233346789999999998874432211  222222    46899999999999


Q ss_pred             CCCCcccC--HHHHHH----------------------HHHHh---CCcEEEeccCCCCCHHHHHHHHH
Q 028292          131 KESERVVS--KKEGID----------------------FAREY---GCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus       131 ~~~~~~~~--~~~~~~----------------------~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      +.+...+.  .+++..                      .+-+.   -+|+|.+|+.+|+|++-+.+.++
T Consensus       267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            85532111  111111                      11111   24899999999999876554443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.61  E-value=5.5e-07  Score=69.78  Aligned_cols=143  Identities=17%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCC-----------CcceeeeEEEEEE-------------E
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELS-----------PTIGVDFKIKHVA-------------L   56 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~-----------~~~~~~~~~~~~~-------------~   56 (211)
                      ..--|+++|++|+||||++..|...-.           +.+.           ...+..+......             .
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            456788999999999999999975311           1000           0001111110000             0


Q ss_pred             CCeEEEEEEEeCCCccccccc--------cc---cc-ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEE
Q 028292           57 GGKKMKLAIWDTAGQERFRTL--------TS---SY-YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL  124 (211)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~--------~~---~~-~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~iv  124 (211)
                      ....+.+.|+||||.......        ..   .. -...+..++|+|++...  +.+.. ......     .-.+--+
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~-----~~~~~gi  264 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHE-----AVGLTGI  264 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHh-----hCCCCEE
Confidence            123467899999996432211        11   11 12457789999998653  22221 111111     1123468


Q ss_pred             EEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292          125 VGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus       125 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      |+||.|....-.    .+.......++|+.+++  +|++++++.
T Consensus       265 IlTKlD~t~~~G----~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        265 ILTKLDGTAKGG----VVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             EEECCCCCCCcc----HHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            899999543322    34455667799999888  888887764

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.61  E-value=1.1e-06  Score=64.93  Aligned_cols=89  Identities=19%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC--CCCCCC----CcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TFEELS----PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LT   78 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~   78 (211)
                      .+..-|.|+|++++|||+|+|.|++.  .+....    .|.|.-........ +....+.++||+|......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence            45677899999999999999999998  552221    22222222111111 2346799999999543322      12


Q ss_pred             cccccC--ccEEEEEEECCChhcH
Q 028292           79 SSYYRG--AQGIIMVYDVTRRDTF  100 (211)
Q Consensus        79 ~~~~~~--~d~~ilv~d~~~~~s~  100 (211)
                      ...+..  ++++|+..+.......
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~~  107 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGDD  107 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHHH
Confidence            222333  7888887777655433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=7.6e-08  Score=72.20  Aligned_cols=164  Identities=18%  Similarity=0.175  Sum_probs=99.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCccee--eeEEE-EEEEC--------------------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSPTIGV--DFKIK-HVALG--------------------------   57 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~----~~~~~~~~~--~~~~~-~~~~~--------------------------   57 (211)
                      .-++||.-+|+...||||++.++.+-..    .+.......  .+... .+.++                          
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            4679999999999999999999976321    111110000  00000 00000                          


Q ss_pred             ---C---eEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 028292           58 ---G---KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----RDTFTNLADIWAKEIDLYSTNQDCIKLLVGN  127 (211)
Q Consensus        58 ---~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (211)
                         +   --..+.|.|+||++-..........-.|++++++..+.    |++-+++..  ...+..      +.++++-|
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L------khiiilQN  187 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL------KHIIILQN  187 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh------ceEEEEec
Confidence               0   11357899999987655544443344577777666654    244444432  222221      34788899


Q ss_pred             CCCCCCCcc--cCHHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292          128 KVDKESERV--VSKKEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       128 K~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      |.|+..+..  ...++++.|...   .+.|++++||.-+.|++-+.++|.+.+.......
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf  247 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF  247 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence            999954332  334455566654   3569999999999999999999998886554444

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.2e-06  Score=72.25  Aligned_cols=144  Identities=16%  Similarity=0.240  Sum_probs=83.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeee---------------------------------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDF---------------------------------------   49 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~---------------------------------------   49 (211)
                      ....||++.|..++||||++|+++..+.  ....+++..-.                                       
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            3668999999999999999999997654  12222221100                                       


Q ss_pred             ---EEEEEEECCeE-----EEEEEEeCCCc---ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCC
Q 028292           50 ---KIKHVALGGKK-----MKLAIWDTAGQ---ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ  118 (211)
Q Consensus        50 ---~~~~~~~~~~~-----~~~~i~D~~g~---~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (211)
                         ....+......     -.+.++|.||.   .+.......+...+|++|+|.++.+..+... ++ +.....    ..
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~-Ff~~vs----~~  260 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQ-FFHKVS----EE  260 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HH-HHHHhh----cc
Confidence               00011111111     13678899993   3445566777889999999999987643322 12 332222    23


Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--------cEEEeccCC
Q 028292          119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGC--------LFLECSAKT  160 (211)
Q Consensus       119 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~  160 (211)
                      .+.++|+-||.|.....+.-.++++.-..+..+        .+|.+|++.
T Consensus       261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            455566667889855443333444333333322        367788764

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.59  E-value=1.4e-06  Score=70.52  Aligned_cols=135  Identities=17%  Similarity=0.252  Sum_probs=85.3

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------------------------------------------
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTI-------------------------------------------   45 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~-------------------------------------------   45 (211)
                      ..+...+|+|+|+..+|||+.+..+.....-...+..                                           
T Consensus       304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~  383 (980)
T KOG0447|consen  304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI  383 (980)
T ss_pred             ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence            3456679999999999999999998754331111100                                           


Q ss_pred             ----------eeee--EEEEEEECCeE-EEEEEEeCCCc-------------ccccccccccccCccEEEEEEECCChhc
Q 028292           46 ----------GVDF--KIKHVALGGKK-MKLAIWDTAGQ-------------ERFRTLTSSYYRGAQGIIMVYDVTRRDT   99 (211)
Q Consensus        46 ----------~~~~--~~~~~~~~~~~-~~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s   99 (211)
                                |.+.  .++.+++.+.+ .++.++|+||-             +..-++...++.+.+++|+|+...+.+-
T Consensus       384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA  463 (980)
T KOG0447|consen  384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA  463 (980)
T ss_pred             HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence                      1111  22223333322 35788999992             1223566778899999999997765544


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 028292          100 FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR  147 (211)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  147 (211)
                      ..+...-+...+.    ..+...|+|++|.|+.+..-.+...++....
T Consensus       464 ERSnVTDLVsq~D----P~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  464 ERSIVTDLVSQMD----PHGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             hhhhHHHHHHhcC----CCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            3333221332222    5778889999999998877667666665544

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=2.7e-07  Score=71.20  Aligned_cols=152  Identities=18%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCC------------------------CCcceeeeEEEEEEEC----------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL------------------------SPTIGVDFKIKHVALG----------   57 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------------~~~~~~~~~~~~~~~~----------   57 (211)
                      -.+++.|+|-..+|||||+-.|+.++.+.-                        ....|.+-....+.+.          
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            467999999999999999999986543110                        0111222222222221          


Q ss_pred             CeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           58 GKKMKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      ...--++|+|.+|+..|.......+.  ..|.+.+|+.+...-.+-.- + .+-++.    .-++|++++.+|+|+....
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-E-HLgl~~----AL~iPfFvlvtK~Dl~~~~  319 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-E-HLGLIA----ALNIPFFVLVTKMDLVDRQ  319 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-H-HHHHHH----HhCCCeEEEEEeeccccch
Confidence            12234799999999998765544433  24777888888765332211 1 233333    4689999999999985531


Q ss_pred             c------------------------cCHHHHHHHHHH---hC-CcEEEeccCCCCCHHHHHH
Q 028292          136 V------------------------VSKKEGIDFARE---YG-CLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus       136 ~------------------------~~~~~~~~~~~~---~~-~~~~~~Sa~~~~~v~~~~~  169 (211)
                      .                        -..+++..-++.   -+ +|+|.+|..+|+|++-+-.
T Consensus       320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            1                        112222222222   12 4899999999999875433

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.58  E-value=2.3e-07  Score=70.59  Aligned_cols=85  Identities=22%  Similarity=0.201  Sum_probs=58.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC---------------CeEEEEEEEeCCCcc---
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG---------------GKKMKLAIWDTAGQE---   72 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~---   72 (211)
                      +.++|.++|.|+||||||.|.|+.... ....|....+.....+.+.               .....++++|++|.-   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            557999999999999999999998876 4444544444444444442               233568999999832   


Q ss_pred             ----cccccccccccCccEEEEEEECCC
Q 028292           73 ----RFRTLTSSYYRGAQGIIMVYDVTR   96 (211)
Q Consensus        73 ----~~~~~~~~~~~~~d~~ilv~d~~~   96 (211)
                          .........++.+|+++-|+++..
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence                222333445788999999988753

>PRK12289 GTPase RsgA; Reviewed

Probab=98.57  E-value=1.2e-07  Score=74.39  Aligned_cols=56  Identities=25%  Similarity=0.310  Sum_probs=38.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCCCcce-------eeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIG-------VDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      ++|+|++|||||||||+|+...........+       ++....-+.+.+..   .++||||-..+
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            7999999999999999999765433333333       45555555554333   57899995433

>PRK12288 GTPase RsgA; Reviewed

Probab=98.57  E-value=1.3e-07  Score=74.16  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=37.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------eeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTI-------GVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (211)
                      ++++|.+|||||||||+|++..........       .++....-+.+.+..   .++||||-..+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            789999999999999999976542222111       133344444544332   488999965554

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.57  E-value=9.4e-06  Score=64.05  Aligned_cols=161  Identities=17%  Similarity=0.207  Sum_probs=95.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeee----------EEEEEEE-CCeEEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDF----------KIKHVAL-GGKKMKLAI   65 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~----------~~~~~~~-~~~~~~~~i   65 (211)
                      ..|=|.|+|+.-+||||||.|+.....               ....+..|.+.          .-..+.+ ++..+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            346799999999999999999975321               01111222211          2223333 466788999


Q ss_pred             EeCCC--------c-----cc------ccccc----------cccc--cCccEEEEEEECC----ChhcHHHHHHHHHHH
Q 028292           66 WDTAG--------Q-----ER------FRTLT----------SSYY--RGAQGIIMVYDVT----RRDTFTNLADIWAKE  110 (211)
Q Consensus        66 ~D~~g--------~-----~~------~~~~~----------~~~~--~~~d~~ilv~d~~----~~~s~~~~~~~~~~~  110 (211)
                      +|+-|        .     ++      |+.-.          +..+  +..-++|+--|-+    .++.+..+.+.....
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            99988        0     00      00000          1111  1234566655544    245565555544444


Q ss_pred             HHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          111 IDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       111 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      +.    .-++|+++++|-.+-  ......+.+.++..+++++++++++..- .-+++..-+-+.+++.+
T Consensus       176 Lk----~igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI~~Il~~vLyEFP  237 (492)
T PF09547_consen  176 LK----EIGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQL-REEDITRILEEVLYEFP  237 (492)
T ss_pred             HH----HhCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHc-CHHHHHHHHHHHHhcCC
Confidence            44    578999999998873  3334456677788899999999887542 33555555555555543

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR00092 GTP-binding protein YchF

Probab=98.56  E-value=2.5e-07  Score=72.46  Aligned_cols=82  Identities=21%  Similarity=0.090  Sum_probs=54.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-E-ELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQER---   73 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~---   73 (211)
                      +++.++|.|++|||||++.|++... . ...|....+.....+.+.+.               ...+.+.|+||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765 2 12232222233333344332               24678999999432   


Q ss_pred             ----ccccccccccCccEEEEEEECC
Q 028292           74 ----FRTLTSSYYRGAQGIIMVYDVT   95 (211)
Q Consensus        74 ----~~~~~~~~~~~~d~~ilv~d~~   95 (211)
                          ........++++|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223344578899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.55  E-value=4.9e-07  Score=68.64  Aligned_cols=97  Identities=12%  Similarity=0.098  Sum_probs=57.2

Q ss_pred             eEEEEEEEeCCCccccccccc-------cc-----ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292           59 KKMKLAIWDTAGQERFRTLTS-------SY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG  126 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~-------~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (211)
                      ..+.+.|+||||....+...-       ..     -...|..++|+|++...  +.+.. .. .+...   . .+--+|+
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~-~f~~~---~-~~~g~Il  224 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AK-VFNEA---V-GLTGIIL  224 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HH-HHHhh---C-CCCEEEE
Confidence            346789999999654332211       11     12378999999997542  22211 21 11111   1 1356889


Q ss_pred             eCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292          127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus       127 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ||.|......    .+.......++|+.+++  +|++++++..
T Consensus       225 TKlDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       225 TKLDGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             EccCCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            9999744332    33445556689988888  7888877643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=8.8e-07  Score=71.86  Aligned_cols=135  Identities=13%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..++-+.|+|+||+||||||+.|........    ..+...-...+.+.+.+++|.++|.  ...++. ...+-+|.+++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlL  139 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----IDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLL  139 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhh----hhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEE
Confidence            3567888999999999999999986543110    0011111223456777899999994  233333 33456899999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccCHHHH------HHHHHH-hCCcEEEeccC
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVSKKEG------IDFARE-YGCLFLECSAK  159 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~------~~~~~~-~~~~~~~~Sa~  159 (211)
                      ++|.+-.-..+.+.  +++++..    .+.| ++-|++..|+-.... ....+      +.|..- .|+.+|.+|..
T Consensus       140 lIdgnfGfEMETmE--FLnil~~----HGmPrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         140 LIDGNFGFEMETME--FLNILIS----HGMPRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             EeccccCceehHHH--HHHHHhh----cCCCceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            99998763333332  5555554    4454 455689999843221 11111      122222 36788888854

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.54  E-value=8e-08  Score=66.56  Aligned_cols=58  Identities=29%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC---CCCC----CcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF---EELS----PTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      -.++++|++|||||||||.|.....   .+..    .-..++.....+.+...   ..++||||-..+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            3678999999999999999998743   1111    11123344444555343   367799995444

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.52  E-value=3.5e-07  Score=71.20  Aligned_cols=95  Identities=16%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCccccccc----cccc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      +.+.|+||+|.......    ....  ..+.|..++|+|+.....-......+...+        .+--+|+||.|....
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~--------~~~giIlTKlD~~~~  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV--------GIDGVILTKVDADAK  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC--------CCCEEEEeeecCCCC
Confidence            46899999996542211    1111  225688899999976532221111122111        124588999997443


Q ss_pred             cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292          135 RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      -.    -+...+...+.|+.+++  +|++++++..
T Consensus       295 ~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        295 GG----AALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             cc----HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence            33    23344556689988887  7899887654

>PRK13796 GTPase YqeH; Provisional

Probab=98.52  E-value=1.7e-07  Score=74.15  Aligned_cols=55  Identities=24%  Similarity=0.307  Sum_probs=42.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      .++.|+|.+|||||||||+|+....     ....+.+|+|.....+.+++.   ..++||||-
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            4799999999999999999986432     235567788888777777554   368999995

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.51  E-value=4e-07  Score=62.38  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=51.9

Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK  159 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (211)
                      ..+..+|++++|+|+.++.+.... . +...+...  ..++|+++|+||+|+.+...  .....+.....+..++++||.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            446789999999999988654421 1 23333322  14789999999999854332  223445555667889999998


Q ss_pred             CCC
Q 028292          160 TRV  162 (211)
Q Consensus       160 ~~~  162 (211)
                      ++.
T Consensus        81 ~~~   83 (141)
T cd01857          81 KEN   83 (141)
T ss_pred             CCC
Confidence            875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.50  E-value=2.9e-07  Score=72.79  Aligned_cols=56  Identities=23%  Similarity=0.374  Sum_probs=43.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (211)
                      .+|+++|.+|||||||+|+|++...     ....+.+|++.....+.+++.   +.++||||-.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence            4899999999999999999997542     345566777777777766332   5689999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01856 YlqF YlqF

Probab=98.50  E-value=2.8e-07  Score=65.32  Aligned_cols=91  Identities=16%  Similarity=0.058  Sum_probs=61.2

Q ss_pred             ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLE  155 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      ......+.++|.+++|+|++++...... . +...      ..++|+++|+||+|+.+....  ....++....+..++.
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~------~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~   80 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKI------LGNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLF   80 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhH------hcCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEE
Confidence            3445667899999999999876432211 1 1111      135789999999998543211  1122333334457899


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 028292          156 CSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       156 ~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      +||+++.|++++...+...+.
T Consensus        81 iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          81 VNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EECCCcccHHHHHHHHHHHHH
Confidence            999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.48  E-value=3.2e-07  Score=68.70  Aligned_cols=56  Identities=27%  Similarity=0.374  Sum_probs=36.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCC---CCC----cceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEE---LSP----TIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      .++++|.+|||||||||+|.+.....   ...    ...++.....+.+.+    -.++||||-..+
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~  184 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF  184 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence            67899999999999999999764422   111    112444444455533    268899995443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.47  E-value=7.4e-07  Score=68.02  Aligned_cols=92  Identities=18%  Similarity=0.094  Sum_probs=62.8

Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC  156 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .....+..+|++++|+|+.++.+.... . +...+      .++|+++|+||+|+.+....  ....+.....+.+++.+
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~-~-i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~i   83 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRNP-M-IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAI   83 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCCh-h-HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEE
Confidence            345567899999999999887543221 1 22222      35799999999998543211  11122233345688999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028292          157 SAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ||+++.|++++.+.+.+.+.+.
T Consensus        84 Sa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        84 NAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             ECCCcccHHHHHHHHHHHHHHh
Confidence            9999999999999998887543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.45  E-value=1.1e-06  Score=61.44  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      +++.|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578999999999999999865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.42  E-value=1.9e-06  Score=77.76  Aligned_cols=111  Identities=19%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCC-----CCc--ceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccc
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTFEEL-----SPT--IGVDFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSS   80 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~   80 (211)
                      .+|+|++|+||||||+.- +..+...     ..+  .+.+ ......+.+   +-.++||+|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999988 4444111     111  1111 122333333   34688999921        12233544


Q ss_pred             cc---------cCccEEEEEEECCChh-----cHH----HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           81 YY---------RGAQGIIMVYDVTRRD-----TFT----NLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        81 ~~---------~~~d~~ilv~d~~~~~-----s~~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      ++         +-.+++|+++|+.+-.     ...    .+.. .+..+.... ....|+.|+++|+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~-rl~el~~~l-g~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQ-RLQELREQL-GARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHh-CCCCCEEEEEecchhhc
Confidence            43         3479999999987532     111    2222 223333333 57899999999999854

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.38  E-value=2.2e-06  Score=60.36  Aligned_cols=135  Identities=19%  Similarity=0.303  Sum_probs=69.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeC-CCccc--------------------
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDT-AGQER--------------------   73 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~~--------------------   73 (211)
                      ||++-|++|+|||||+++++..-.....+..|  +....+.-++...-+.+.|. .|...                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~   78 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL   78 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence            68999999999999999998644222223333  44444445555555666666 33110                    


Q ss_pred             --cccc----ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCC-CCCCCcccCHHHHHHHH
Q 028292           74 --FRTL----TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV-DKESERVVSKKEGIDFA  146 (211)
Q Consensus        74 --~~~~----~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~  146 (211)
                        +...    ....+..+|  ++++|---+..+.. .. |.+.+.... ..++|++.++.+. +.        ....++.
T Consensus        79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~-~~-F~~~v~~~l-~s~~~vi~vv~~~~~~--------~~l~~i~  145 (168)
T PF03266_consen   79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELKS-PG-FREAVEKLL-DSNKPVIGVVHKRSDN--------PFLEEIK  145 (168)
T ss_dssp             HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CH-HHHHHHHHH-CTTSEEEEE--SS--S--------CCHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhcC-HH-HHHHHHHHH-cCCCcEEEEEecCCCc--------HHHHHHH
Confidence              1111    111112344  77778544321111 11 334444333 4778888888877 32        1234455


Q ss_pred             HHhCCcEEEeccCCCCCH
Q 028292          147 REYGCLFLECSAKTRVNV  164 (211)
Q Consensus       147 ~~~~~~~~~~Sa~~~~~v  164 (211)
                      ...++.+++++..+.+.+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            666788999988777655

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.37  E-value=3.1e-06  Score=65.60  Aligned_cols=155  Identities=15%  Similarity=0.134  Sum_probs=89.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCC-------------------CCCcceeee-----EEEEE-------------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-------------------LSPTIGVDF-----KIKHV-------------   54 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-------------------~~~~~~~~~-----~~~~~-------------   54 (211)
                      -.++|.|+|...+|||||+-.|+.+..+.                   ..++.|-++     .-..+             
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            35799999999999999998887654311                   111111111     10000             


Q ss_pred             -EECCeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           55 -ALGGKKMKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        55 -~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                       ..++..-.++|+|++|++.|-...-..+.  -.|...+++-++..   .+-++     +-+..    .-.+|+++|.+|
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEH-----LgLAL----aL~VPVfvVVTK  282 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEH-----LGLAL----ALHVPVFVVVTK  282 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHh-----hhhhh----hhcCcEEEEEEe
Confidence             01222345799999999988755433332  24667777776654   11111     11111    357899999999


Q ss_pred             CCCCCCcccCHH--HHHHHHHH--------------------------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          129 VDKESERVVSKK--EGIDFARE--------------------------YGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       129 ~D~~~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      +|+.+.+.....  .+..+.++                          .-+++|.+|-.+|+++.-+. ..++.+.
T Consensus       283 IDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk-mFLNlls  357 (641)
T KOG0463|consen  283 IDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK-MFLNLLS  357 (641)
T ss_pred             eccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH-HHHhhcC
Confidence            998665543222  12222222                          13578999999999987543 3344443

>PRK13796 GTPase YqeH; Provisional

Probab=98.37  E-value=2.8e-06  Score=67.30  Aligned_cols=84  Identities=21%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             cCcc-EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHHhCC---cEE
Q 028292           83 RGAQ-GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI----DFAREYGC---LFL  154 (211)
Q Consensus        83 ~~~d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~~~~---~~~  154 (211)
                      ...+ .+++|+|+.+...-      |...+..+.  .+.|+++|+||+|+.+. ....+.+.    .++...++   .++
T Consensus        67 ~~~~~lIv~VVD~~D~~~s------~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~  137 (365)
T PRK13796         67 GDSDALVVNVVDIFDFNGS------WIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVV  137 (365)
T ss_pred             cccCcEEEEEEECccCCCc------hhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence            4444 88999999885311      333444333  36799999999999643 23333333    33455565   589


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028292          155 ECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      .+||+++.|++++++.|.+..
T Consensus       138 ~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        138 LISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             EEECCCCCCHHHHHHHHHHhc
Confidence            999999999999999997653

>PRK01889 GTPase RsgA; Reviewed

Probab=98.36  E-value=2.7e-06  Score=67.14  Aligned_cols=84  Identities=12%  Similarity=0.036  Sum_probs=56.1

Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      ..+.|.+++|+++..+-....+.. ++..+.    ..+++.++|+||+|+.+......+....+  ..+.+++.+|++++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr-~L~~a~----~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g  182 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIER-YLALAW----ESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDG  182 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHH-HHHHHH----HcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCC
Confidence            578999999999964433333322 444443    46778899999999965421111111111  34678999999999


Q ss_pred             CCHHHHHHHHH
Q 028292          162 VNVEQCFEELV  172 (211)
Q Consensus       162 ~~v~~~~~~i~  172 (211)
                      .|++++..++.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999888874

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.36  E-value=1.7e-06  Score=66.37  Aligned_cols=92  Identities=22%  Similarity=0.146  Sum_probs=63.1

Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC  156 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .....+..+|++|+|+|+.++.+.+.. . +...+      .++|+++|+||+|+.+...  .+...++....+.+++.+
T Consensus        17 ~l~~~l~~aDvIL~VvDar~p~~~~~~-~-l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~v   86 (287)
T PRK09563         17 EIKENLKLVDVVIEVLDARIPLSSENP-M-IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAI   86 (287)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCCCCCh-h-HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEE
Confidence            345567899999999999887543221 1 22211      2689999999999853311  112222333446778999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028292          157 SAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ||+++.|++++.+.+.+.+.+.
T Consensus        87 Sa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         87 NAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             ECCCcccHHHHHHHHHHHHHHH
Confidence            9999999999999998887553

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=2.3e-06  Score=63.62  Aligned_cols=59  Identities=31%  Similarity=0.574  Sum_probs=43.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----LSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (211)
                      -.++|+.+|..|.||||||..|.+-.+..     ..++.........+.-.+....++++||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            56899999999999999999999988732     223333333333444456778889999998

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.31  E-value=7e-07  Score=69.33  Aligned_cols=61  Identities=25%  Similarity=0.364  Sum_probs=51.6

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ..-.+.|++.|+|.|++||||+||+|...........+|.+..-..+.++.   .+.|.|.||.
T Consensus       247 ~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  247 GELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             cccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence            445688999999999999999999999999888888888877777776555   5788999993

>PRK00098 GTPase RsgA; Reviewed

Probab=98.29  E-value=1.8e-06  Score=66.58  Aligned_cols=56  Identities=30%  Similarity=0.312  Sum_probs=35.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------eeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTI-------GVDFKIKHVALGGKKMKLAIWDTAGQER   73 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (211)
                      .++++|.+|+|||||+|.|++..........       .++.....+.+.+.   ..++||||-..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            5889999999999999999976542222211       12333333444332   36789999543

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.28  E-value=1.8e-06  Score=65.45  Aligned_cols=58  Identities=31%  Similarity=0.375  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC---CCCC----CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF---EELS----PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (211)
                      -.+++|++|||||||+|+|.....   .+..    ....++....-+.+.+.+   .|+||||-..+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            567889999999999999986432   1111    222345566666665434   467999966554

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.26  E-value=2.3e-06  Score=65.69  Aligned_cols=59  Identities=29%  Similarity=0.287  Sum_probs=37.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (211)
                      -.++++|++|+|||||||.|++.......       ....++.....+.+.+.   ..++||||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999976542111       11123344444444422   2588999975543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=4.3e-05  Score=56.19  Aligned_cols=157  Identities=25%  Similarity=0.358  Sum_probs=91.9

Q ss_pred             eEEEEEEcCCCC--cHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEE--EEEEeCCCccc-ccccccccccCcc
Q 028292           13 LFKLLLIGDSGV--GKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK--LAIWDTAGQER-FRTLTSSYYRGAQ   86 (211)
Q Consensus        13 ~~~i~v~G~~~~--GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~i~D~~g~~~-~~~~~~~~~~~~d   86 (211)
                      ...++|.|..|+  ||.+|+.+|....+ ........++++  -.+++++.|.  +.+.=.+-..+ +-... ....-..
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h--gwtid~kyysadi~lcishicde~~lpn~-~~a~pl~   80 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH--GWTIDNKYYSADINLCISHICDEKFLPNA-EIAEPLQ   80 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeee--ceEecceeeecceeEEeecccchhccCCc-cccccee
Confidence            356889999999  99999999998888 333333333322  3333433332  22221111111 11111 1122346


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC---------------------------cc---
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE---------------------------RV---  136 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------------------~~---  136 (211)
                      ++|.|||.+....+..+.. |+.-.....  .++ .+.++||.|..+.                           ..   
T Consensus        81 a~vmvfdlse~s~l~alqd-wl~htdins--fdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgise  156 (418)
T KOG4273|consen   81 AFVMVFDLSEKSGLDALQD-WLPHTDINS--FDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISE  156 (418)
T ss_pred             eEEEEEeccchhhhHHHHh-hcccccccc--chh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccc
Confidence            8899999998877777666 654332211  222 3556899986321                           00   


Q ss_pred             --------------cCHHHHHHHHHHhCCcEEEeccCCC------------CCHHHHHHHHHHHHH
Q 028292          137 --------------VSKKEGIDFAREYGCLFLECSAKTR------------VNVEQCFEELVLKIL  176 (211)
Q Consensus       137 --------------~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~i~~~~~  176 (211)
                                    .....+++|+.++++.+++.++-+.            .||+.+|..+...+-
T Consensus       157 tegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  157 TEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             cccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence                          1122356888899999999988442            488999988876653

>PRK13695 putative NTPase; Provisional

Probab=98.24  E-value=6.2e-05  Score=53.45  Aligned_cols=80  Identities=10%  Similarity=0.006  Sum_probs=45.3

Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      +..+++  +++|--.+.  +.....+.+.+.... ..+.|++++.||...       .....+.....+..++++   +.
T Consensus        94 l~~~~~--lllDE~~~~--e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~  158 (174)
T PRK13695         94 LEEADV--IIIDEIGKM--ELKSPKFVKAVEEVL-DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TP  158 (174)
T ss_pred             cCCCCE--EEEECCCcc--hhhhHHHHHHHHHHH-hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cc
Confidence            345555  677842221  111122444444444 567899999998642       123334455556677777   44


Q ss_pred             CCHHHHHHHHHHHHH
Q 028292          162 VNVEQCFEELVLKIL  176 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~  176 (211)
                      +|-+++.+.+++.+.
T Consensus       159 ~~r~~~~~~~~~~~~  173 (174)
T PRK13695        159 ENRDSLPFEILNRLK  173 (174)
T ss_pred             hhhhhHHHHHHHHHh
Confidence            555678888877653

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.21  E-value=2e-05  Score=63.25  Aligned_cols=134  Identities=13%  Similarity=0.096  Sum_probs=70.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh------CCC-----CCCC-----------CcceeeeEEEEEEEC------------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS------DTF-----EELS-----------PTIGVDFKIKHVALG------------   57 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~------~~~-----~~~~-----------~~~~~~~~~~~~~~~------------   57 (211)
                      ++--|+++|.+||||||++..|..      .+.     +.+.           ...+..+......-+            
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            356789999999999999999963      111     1111           011111111000000            


Q ss_pred             -CeEEEEEEEeCCCcccccccc----cc--cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           58 -GKKMKLAIWDTAGQERFRTLT----SS--YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        58 -~~~~~~~i~D~~g~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                       ...+.+.|+||+|....+..+    ..  ...+.+-+++|+|+.....-......+..        .-.+--+|+||.|
T Consensus       179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~--------~~~~~g~IlTKlD  250 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD--------SVDVGSVIITKLD  250 (429)
T ss_pred             HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh--------ccCCcEEEEECcc
Confidence             124688999999955432211    11  12346789999998765433222221221        1234568899999


Q ss_pred             CCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292          131 KESERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ....-.    -+.......+.|+.+++
T Consensus       251 ~~argG----~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       251 GHAKGG----GALSAVAATKSPIIFIG  273 (429)
T ss_pred             CCCCcc----HHhhhHHHHCCCeEEEc
Confidence            733221    12334445566655543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.18  E-value=1.4e-05  Score=64.18  Aligned_cols=125  Identities=14%  Similarity=0.135  Sum_probs=82.2

Q ss_pred             eEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh----------cHHHHHHHHHHHHHhhcCCC
Q 028292           49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD----------TFTNLADIWAKEIDLYSTNQ  118 (211)
Q Consensus        49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~  118 (211)
                      +....+.+. ....+.++|.+|+...+..|..++.+++++|+|+++++..          .+.+....|..++.... -.
T Consensus       225 i~e~~f~~~-~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~-~~  302 (389)
T PF00503_consen  225 ITEIDFNFS-GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW-FK  302 (389)
T ss_dssp             EEEEEEEE--TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG-GT
T ss_pred             eeEEEEEee-cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc-cc
Confidence            334444441 3356888999999999999999999999999999987532          24444443555554333 45


Q ss_pred             CCcEEEEEeCCCCC------CC----------cc--cCHHHHHHHHHHh------------CCcEEEeccCCCCCHHHHH
Q 028292          119 DCIKLLVGNKVDKE------SE----------RV--VSKKEGIDFAREY------------GCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus       119 ~~p~ivv~nK~D~~------~~----------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~v~~~~  168 (211)
                      +.|++|++||.|+.      ..          ..  -..+.+..+....            .+.+..++|.+...++.+|
T Consensus       303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~  382 (389)
T PF00503_consen  303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF  382 (389)
T ss_dssp             TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred             cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence            89999999999961      11          11  2344455444321            1245678888888888888


Q ss_pred             HHHHHHH
Q 028292          169 EELVLKI  175 (211)
Q Consensus       169 ~~i~~~~  175 (211)
                      +.+.+.+
T Consensus       383 ~~v~~~i  389 (389)
T PF00503_consen  383 NAVKDII  389 (389)
T ss_dssp             HHHHHHH
T ss_pred             HHhcCcC
Confidence            8877643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=3.2e-06  Score=65.91  Aligned_cols=158  Identities=17%  Similarity=0.155  Sum_probs=94.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCC----------------------C--C------CCCCcceeeeEEEEEEECCe
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT----------------------F--E------ELSPTIGVDFKIKHVALGGK   59 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~----------------------~--~------~~~~~~~~~~~~~~~~~~~~   59 (211)
                      ....+|++++|+..+||||+-..++...                      +  .      ......|.+...-.-.++..
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            4567899999999999999876665310                      0  0      01111122222222222334


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV  136 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (211)
                      .-++++.|+||+..|-...-....++|..++|+++...+   -|+.--++--..+.... ..-...|+++||+|-+..+ 
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvn-  233 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVN-  233 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCccC-
Confidence            456888999999988877777788999999999985432   23332111111121111 3445678889999964322 


Q ss_pred             cCH-------HHHHHHHHHhC------CcEEEeccCCCCCHHHHHH
Q 028292          137 VSK-------KEGIDFAREYG------CLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus       137 ~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ++.       +....+....+      ..++++|..+|.++.+...
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            221       12223333322      4689999999999988665

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.11  E-value=3.2e-06  Score=63.84  Aligned_cols=60  Identities=18%  Similarity=0.404  Sum_probs=44.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCcceeeeEEEE-EEECCeEEEEEEEeCCCc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKH-VALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~   71 (211)
                      ...+++.|+|.||+|||+|||++-....     ......+|.+..+.. +.+.... .+.++||||-
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            3568999999999999999999875433     456666777776666 4444433 5888999993

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.09  E-value=4.7e-05  Score=57.87  Aligned_cols=94  Identities=24%  Similarity=0.162  Sum_probs=67.7

Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC  156 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      +.+-.+.+.|-+++++.+.+|+--....+.++-...    ..++..++++||+|+....+...++........+.+++.+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae----~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE----AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH----HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            334445567888888888888644444333444443    4677778889999997665544456667778889999999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028292          157 SAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~  174 (211)
                      |++++++++++...+...
T Consensus       148 s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         148 SAKNGDGLEELAELLAGK  165 (301)
T ss_pred             cCcCcccHHHHHHHhcCC
Confidence            999999999988776554

>TIGR00959 ffh signal recognition particle protein

Probab=98.08  E-value=2.9e-05  Score=62.52  Aligned_cols=87  Identities=16%  Similarity=0.139  Sum_probs=48.4

Q ss_pred             EEEEEEEeCCCccccccc----ccc--cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           60 KMKLAIWDTAGQERFRTL----TSS--YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~----~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .+.+.|+||+|....+..    ...  ..-..|.+++|+|+...+   +... +...+....   + ..=+|+||.|...
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~-~a~~f~~~v---~-i~giIlTKlD~~~  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVN-TAKTFNERL---G-LTGVVLTKLDGDA  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHH-HHHHHHhhC---C-CCEEEEeCccCcc
Confidence            356899999995433211    100  123467889999987543   3222 222222111   1 2356799999633


Q ss_pred             CcccCHHHHHHHHHHhCCcEEEecc
Q 028292          134 ERVVSKKEGIDFAREYGCLFLECSA  158 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (211)
                      ...    .+.......++|+.++..
T Consensus       254 ~~G----~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 RGG----AALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ccc----HHHHHHHHHCcCEEEEeC
Confidence            322    255666777888766654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.08  E-value=4.4e-05  Score=60.30  Aligned_cols=141  Identities=16%  Similarity=0.129  Sum_probs=70.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-Ccce---eeeE---------------EEEE-EE-----------CCeEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIG---VDFK---------------IKHV-AL-----------GGKKM   61 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~---~~~~---------------~~~~-~~-----------~~~~~   61 (211)
                      .-.++++|++|+||||++.+|......... ...+   .+.+               ...+ .+           .....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            347889999999999999999754210000 0000   0000               0000 01           01234


Q ss_pred             EEEEEeCCCcccccccc----cc--cccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           62 KLAIWDTAGQERFRTLT----SS--YYRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~~----~~--~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      .+.++||+|....+...    ..  ......-.++|++++.. +....+...|......-.....-+-=+|++|.|-...
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence            68999999965433221    11  11223456889998764 3333333222222110000000123577899996332


Q ss_pred             cccCHHHHHHHHHHhCCcEEEec
Q 028292          135 RVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                          .-.+..+....++|+.+++
T Consensus       297 ----~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        297 ----LGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ----ccHHHHHHHHHCcCeEEEe
Confidence                2234556667777766664

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.08  E-value=7.8e-06  Score=60.36  Aligned_cols=66  Identities=20%  Similarity=0.299  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChh--------------cHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD--------------TFTNLADIWAKEIDLYSTNQDCIKLLVG  126 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~--------------s~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (211)
                      +.++.+|.+|+.+.+..|..++....++|+|...++..              ++.-.+..|.+.     ....+.+|+.+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR-----wL~tisvIlFL  276 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR-----WLRTISVILFL  276 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh-----HHhhhheeEEe
Confidence            45788999999999999999999999999999887521              111112222221     13567789999


Q ss_pred             eCCCC
Q 028292          127 NKVDK  131 (211)
Q Consensus       127 nK~D~  131 (211)
                      ||.|+
T Consensus       277 NKqDl  281 (379)
T KOG0099|consen  277 NKQDL  281 (379)
T ss_pred             cHHHH
Confidence            99997

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.07  E-value=3.3e-05  Score=62.40  Aligned_cols=136  Identities=21%  Similarity=0.180  Sum_probs=71.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCC------C-----CCCCCc-----------ceeeeEEEEEEEC-----------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT------F-----EELSPT-----------IGVDFKIKHVALG-----------   57 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~------~-----~~~~~~-----------~~~~~~~~~~~~~-----------   57 (211)
                      ..+..|+++|.+|+||||++..|...-      .     +.+.+.           .+..+.......+           
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            356789999999999999999886421      0     111110           0111111000000           


Q ss_pred             CeEEEEEEEeCCCcccccccc----c--ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           58 GKKMKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~----~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      -....+.|+||+|........    .  ..+...|.+++|+|++...   +... ....+..   ..+ ..-+|+||.|.
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-~a~~F~~---~l~-i~gvIlTKlD~  244 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-QAKAFHE---AVG-IGGIIITKLDG  244 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-HHHHHHh---cCC-CCEEEEecccC
Confidence            012368999999965433211    1  1133578899999987753   2222 1111211   111 23577899996


Q ss_pred             CCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292          132 ESERVVSKKEGIDFAREYGCLFLECSA  158 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (211)
                      ...-.    -+.......+.|+.+++.
T Consensus       245 ~a~~G----~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        245 TAKGG----GALSAVAETGAPIKFIGT  267 (437)
T ss_pred             CCccc----HHHHHHHHHCcCEEEEec
Confidence            33221    334455666777666653

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.07  E-value=1.1e-05  Score=58.43  Aligned_cols=132  Identities=19%  Similarity=0.209  Sum_probs=69.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCC-----------C-----------CCcceeeeEEEEEE-------------ECC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-----------L-----------SPTIGVDFKIKHVA-------------LGG   58 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~-----------~-----------~~~~~~~~~~~~~~-------------~~~   58 (211)
                      .-|+++|++||||||.+-+|.......           +           ....+..+......             ...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            358899999999999999986432100           0           01111111110000             001


Q ss_pred             eEEEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           59 KKMKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      .++.+.|+||+|.......    +..++  ...+-+++|.+++....-...   +.......    + +-=+|++|.|..
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~---~~~~~~~~----~-~~~lIlTKlDet  153 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ---ALAFYEAF----G-IDGLILTKLDET  153 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH---HHHHHHHS----S-TCEEEEESTTSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH---HHHHhhcc----c-CceEEEEeecCC
Confidence            2245899999995543311    11111  146788999999876432221   22222211    1 124779999963


Q ss_pred             CCcccCHHHHHHHHHHhCCcEEEec
Q 028292          133 SERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ...    -.+..+....+.|+-.++
T Consensus       154 ~~~----G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  154 ARL----GALLSLAYESGLPISYIT  174 (196)
T ss_dssp             STT----HHHHHHHHHHTSEEEEEE
T ss_pred             CCc----ccceeHHHHhCCCeEEEE
Confidence            322    235566777788776665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.07  E-value=2.2e-05  Score=55.71  Aligned_cols=84  Identities=15%  Similarity=0.140  Sum_probs=44.6

Q ss_pred             EEEEEEEeCCCcccccc----ccccc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           60 KMKLAIWDTAGQERFRT----LTSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .+.+.++|++|......    ....+  ....+.+++|+|.......   .. +...+...   .+ ..-+|.||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~-~~~~~~~~---~~-~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VN-QAKAFNEA---LG-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HH-HHHHHHhh---CC-CCEEEEECCcCCC
Confidence            34578899999643221    11111  1247999999998754322   22 22222221   12 3567789999643


Q ss_pred             CcccCHHHHHHHHHHhCCcEEE
Q 028292          134 ERVVSKKEGIDFAREYGCLFLE  155 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      ...    .+...+...++|+..
T Consensus       154 ~~g----~~~~~~~~~~~p~~~  171 (173)
T cd03115         154 RGG----AALSIRAVTGKPIKF  171 (173)
T ss_pred             Ccc----hhhhhHHHHCcCeEe
Confidence            322    223355566666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=2.4e-05  Score=62.70  Aligned_cols=138  Identities=16%  Similarity=0.148  Sum_probs=71.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccee------------------eeEEEEEEE------------CCeE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGV------------------DFKIKHVAL------------GGKK   60 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~------------------~~~~~~~~~------------~~~~   60 (211)
                      ..-.|+++|++|+||||++..|.+... .......+.                  +.....+..            .-..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            345899999999999999998875321 000000000                  000000000            0122


Q ss_pred             EEEEEEeCCCcccccc----ccccc--ccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           61 MKLAIWDTAGQERFRT----LTSSY--YRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      ..+.++||+|......    ....+  ....+-.++|+|++.. .....+.       ..+. .. -+-=+|++|.|-..
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~-------~~f~-~~-~~~~~I~TKlDEt~  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI-------SAYQ-GH-GIHGCIITKVDEAA  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH-------HHhc-CC-CCCEEEEEeeeCCC
Confidence            3578999999544221    11111  1223457889998854 3333322       2222 11 22347899999633


Q ss_pred             CcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292          134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      .-    -.+.......++++.+++  +|.+|
T Consensus       341 ~~----G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        341 SL----GIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             Cc----cHHHHHHHHhCCCEEEEE--CCCCc
Confidence            32    234556677788776664  34444

>PRK10867 signal recognition particle protein; Provisional

Probab=98.03  E-value=1.4e-05  Score=64.43  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=46.9

Q ss_pred             EEEEEEEeCCCccccccc----cccc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           60 KMKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .+.+.|+||+|....+..    ...+  .-..+.+++|+|....+   +... ....+..   ..+ ..-+|+||.|...
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~-~a~~F~~---~~~-i~giIlTKlD~~~  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVN-TAKAFNE---ALG-LTGVILTKLDGDA  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHH-HHHHHHh---hCC-CCEEEEeCccCcc
Confidence            356899999995432211    0111  12457789999987542   2222 1222221   111 2346789999633


Q ss_pred             CcccCHHHHHHHHHHhCCcEEEecc
Q 028292          134 ERVVSKKEGIDFAREYGCLFLECSA  158 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (211)
                      ...    .+.......++|+.+++.
T Consensus       255 rgG----~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        255 RGG----AALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ccc----HHHHHHHHHCcCEEEEeC
Confidence            322    255566777888766654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=2.7e-05  Score=69.25  Aligned_cols=114  Identities=25%  Similarity=0.226  Sum_probs=62.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC--CCCCCccee---eeEEEEEEECCeEEEEEEEeCCCcc--------ccccccccc-
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGV---DFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSY-   81 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~-   81 (211)
                      -+|+|++|+||||++..-- ..|  .+...-.+.   ......-.+.+   +-.++||.|..        .-...|..+ 
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            3688999999999886543 222  111111110   01111122222   34678999821        122344433 


Q ss_pred             --------ccCccEEEEEEECCCh-----hcHHHHHHHH---HHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           82 --------YRGAQGIIMVYDVTRR-----DTFTNLADIW---AKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        82 --------~~~~d~~ilv~d~~~~-----~s~~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                              .+..+++|+.+|+.+-     ..-+.....+   ++.+.... ....|++|++||.|+.+-
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEeccccccc
Confidence                    3567999999998653     1111111112   33333333 578999999999998553

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.99  E-value=1.2e-05  Score=57.26  Aligned_cols=83  Identities=23%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             EEEEEEEeCCCcccccccc--ccc---ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           60 KMKLAIWDTAGQERFRTLT--SSY---YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~--~~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      ...+.|+++.|........  ...   .-..+.+|.|+|+.+-.........+...+..-       =++++||+|+.+.
T Consensus        84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-------DvIvlnK~D~~~~  156 (178)
T PF02492_consen   84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-------DVIVLNKIDLVSD  156 (178)
T ss_dssp             C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT--------SEEEEE-GGGHHH
T ss_pred             CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-------CEEEEeccccCCh
Confidence            3566778888855444440  000   124588999999977533334433343333321       2688999998444


Q ss_pred             cccCHHHHHHHHHHhC
Q 028292          135 RVVSKKEGIDFAREYG  150 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (211)
                      . ...+...+..+..+
T Consensus       157 ~-~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  157 E-QKIERVREMIRELN  171 (178)
T ss_dssp             H---HHHHHHHHHHH-
T ss_pred             h-hHHHHHHHHHHHHC
Confidence            3 12234444444443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.97  E-value=7.4e-05  Score=58.12  Aligned_cols=85  Identities=12%  Similarity=0.141  Sum_probs=45.2

Q ss_pred             EEEEEEeCCCcccccccccccc--------cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      +...++++.|..+...+...++        -..+++|.|+|+.+-.....-.......+..       .=+|++||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence            4567888998655444333321        1248899999997642211111111112211       126889999986


Q ss_pred             CCcccCHHHHHHHHHHhC--CcEEEe
Q 028292          133 SERVVSKKEGIDFAREYG--CLFLEC  156 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~  156 (211)
                      ...    +.+.+..+..+  ++++.+
T Consensus       164 ~~~----~~~~~~l~~lnp~a~i~~~  185 (318)
T PRK11537        164 GEA----EKLRERLARINARAPVYTV  185 (318)
T ss_pred             CHH----HHHHHHHHHhCCCCEEEEe
Confidence            532    34445555544  455544

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.97  E-value=0.00011  Score=57.96  Aligned_cols=157  Identities=17%  Similarity=0.203  Sum_probs=78.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccee-eeEEE-----------------EEEE------------CCeEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGV-DFKIK-----------------HVAL------------GGKKM   61 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~-~~~~~-----------------~~~~------------~~~~~   61 (211)
                      .=.|+++|++||||||-+-.|...-. ......++. +.+..                 .+.+            .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            44688999999999999988875433 111122211 11100                 0000            12234


Q ss_pred             EEEEEeCCCccccccc----cccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           62 KLAIWDTAGQERFRTL----TSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~----~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      .+.++||.|...++..    ...++.  ...-..+|++++..  .+++.. .+..+..    -++ -=+|++|.|-.  .
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlke-i~~~f~~----~~i-~~~I~TKlDET--~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKE-IIKQFSL----FPI-DGLIFTKLDET--T  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHH-HHHHhcc----CCc-ceeEEEccccc--C
Confidence            6899999997665532    222222  23445667777665  334433 2222222    111 23678999942  2


Q ss_pred             ccCHHHHHHHHHHhCCcEEEec--cCCCCCHHH-HHHHHHHHHHcCCCc
Q 028292          136 VVSKKEGIDFAREYGCLFLECS--AKTRVNVEQ-CFEELVLKILDTPSL  181 (211)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~-~~~~i~~~~~~~~~~  181 (211)
                      .+-  .........+.|+..++  ..=.+++.. --.|+++.+.+....
T Consensus       353 s~G--~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~  399 (407)
T COG1419         353 SLG--NLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN  399 (407)
T ss_pred             chh--HHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccccc
Confidence            222  23344555566554443  222233321 134666666654443

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=9.3e-05  Score=60.74  Aligned_cols=131  Identities=17%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-------------CCCC-----------CcceeeeEEEEEE------E-CCeEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-------------EELS-----------PTIGVDFKIKHVA------L-GGKKM   61 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-------------~~~~-----------~~~~~~~~~~~~~------~-~~~~~   61 (211)
                      .-.|+|+|++|+||||++..|...-.             +.+.           ...+..+....-.      + ....+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            45788999999999999999875211             0000           0001111100000      0 01246


Q ss_pred             EEEEEeCCCccccccc-------ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           62 KLAIWDTAGQERFRTL-------TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~-------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      .+.|+||+|....+..       .... . ....++|++.+..  ...+..    .+..+.  ...+.-+|+||.|... 
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAtss--~~Dl~e----ii~~f~--~~~~~gvILTKlDEt~-  498 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANAH--FSDLDE----VVRRFA--HAKPQGVVLTKLDETG-  498 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCCC--hhHHHH----HHHHHH--hhCCeEEEEecCcCcc-
Confidence            7899999995432211       1111 1 1245667776642  333322    222222  1245679999999622 


Q ss_pred             cccCHHHHHHHHHHhCCcEEEec
Q 028292          135 RVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                         ..-.+.......++++.+++
T Consensus       499 ---~lG~aLsv~~~~~LPI~yvt  518 (559)
T PRK12727        499 ---RFGSALSVVVDHQMPITWVT  518 (559)
T ss_pred             ---chhHHHHHHHHhCCCEEEEe
Confidence               23455666777788776665

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.94  E-value=0.00018  Score=55.91  Aligned_cols=95  Identities=15%  Similarity=0.153  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCcccccccccccc--------cCccEEEEEEECCChhcHHH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTN-LADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      +...++++.|..........+.        -..|++|-|+|+.+-..-.. ....+...+..-       =+|++||.|+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-------D~ivlNK~Dl  157 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-------DVIVLNKTDL  157 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-------cEEEEecccC
Confidence            4567888888554432222221        24588999999987533222 222233333221       2689999999


Q ss_pred             CCCcccCHHHHHHHHHHhC--CcEEEeccCCCCCHH
Q 028292          132 ESERVVSKKEGIDFAREYG--CLFLECSAKTRVNVE  165 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~  165 (211)
                      .....  .+......+..+  ++++.++. .+....
T Consensus       158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~  190 (323)
T COG0523         158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLA  190 (323)
T ss_pred             CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHH
Confidence            66653  444455555555  57777776 334443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=8.7e-05  Score=58.79  Aligned_cols=133  Identities=18%  Similarity=0.207  Sum_probs=69.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCC-----------CcceeeeEEEEEE------E---C-CeE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELS-----------PTIGVDFKIKHVA------L---G-GKK   60 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~-----------~~~~~~~~~~~~~------~---~-~~~   60 (211)
                      .-.|+++|++|+||||++..|...-.           +.+.           ...+..+....-.      +   . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            46899999999999999999964211           0000           0011111100000      0   0 113


Q ss_pred             EEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      +.+.|+||+|.......    ...++  ...+.+++|+|++...  ..+.. +   +..+. . -.+-=+|++|.|....
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~-i---~~~F~-~-~~idglI~TKLDET~k  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIE-I---ITNFK-D-IHIDGIVFTKFDETAS  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHH-H---HHHhc-C-CCCCEEEEEcccCCCC
Confidence            57899999996442211    11222  2346778889876432  12222 2   22222 1 1223578999996443


Q ss_pred             cccCHHHHHHHHHHhCCcEEEec
Q 028292          135 RVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ..    .+...+...++|+..++
T Consensus       393 ~G----~iLni~~~~~lPIsyit  411 (436)
T PRK11889        393 SG----ELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             cc----HHHHHHHHHCcCEEEEe
Confidence            22    34456667777766554

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.87  E-value=7.1e-05  Score=51.65  Aligned_cols=58  Identities=19%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                      .+.+.|+||+|..   .....++..+|-+|++...+--+.+.-+    ...+      ....-++++||.|
T Consensus        91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~----k~~~------~~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAI----KAGI------MEIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHh----hhhH------hhhcCEEEEeCCC
Confidence            4678899998853   2223477889999998887722221111    1111      1223478899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.85  E-value=2.5e-05  Score=56.77  Aligned_cols=122  Identities=17%  Similarity=0.145  Sum_probs=72.3

Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292           57 GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVG  126 (211)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~  126 (211)
                      +-..+.+.+.|.+|+...+..|..++.+.-.+++++.++..          ...++.+. +...+-.+..-.+.++|+.+
T Consensus       195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nssVIlFL  273 (359)
T KOG0085|consen  195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFL  273 (359)
T ss_pred             chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCceEEEe
Confidence            33444556778888877777777777776666655544321          11222222 22223334445678999999


Q ss_pred             eCCCCCCCc----------------ccCHHHHHHHHHH----hCC------cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          127 NKVDKESER----------------VVSKKEGIDFARE----YGC------LFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       127 nK~D~~~~~----------------~~~~~~~~~~~~~----~~~------~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      ||-|+.++.                +.+.+.+++|..+    .+-      --..+.|.+.+|+.-+|..+...++...
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            999984421                1223333444433    221      2245678888999999998888877543

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.80  E-value=0.0046  Score=43.24  Aligned_cols=146  Identities=13%  Similarity=0.098  Sum_probs=98.6

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEE-eCCCccccccccccccc
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIW-DTAGQERFRTLTSSYYR   83 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-D~~g~~~~~~~~~~~~~   83 (211)
                      ....+..+.-.|+++|..+.++..|..++...+..         +. .         ++..- -.|=-.+.....    .
T Consensus         7 ~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~---------~~-l---------~Vh~a~sLPLp~e~~~lR----p   63 (176)
T PF11111_consen    7 FDKLPELNTATILLVGTEEALLQQLAEAMLEEDKE---------FK-L---------KVHLAKSLPLPSENNNLR----P   63 (176)
T ss_pred             cccCCCcceeEEEEecccHHHHHHHHHHHHhhccc---------ee-E---------EEEEeccCCCcccccCCC----c
Confidence            44567778899999999999999999999963321         11 1         11110 111000111112    2


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      ..|.+++++|....-|+..+..-+...-..+-  .++- .++++-....+.-.+...++.+++..++.+++.+.-.+.++
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ff--lGKV-Cfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~  140 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFF--LGKV-CFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEG  140 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhh--ccce-EEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchH
Confidence            46999999999999999888773333322332  2333 44455555556677889999999999999999999999888


Q ss_pred             HHHHHHHHHHHHH
Q 028292          164 VEQCFEELVLKIL  176 (211)
Q Consensus       164 v~~~~~~i~~~~~  176 (211)
                      ...+-+.|++.+.
T Consensus       141 ~~~lAqRLL~~lq  153 (176)
T PF11111_consen  141 RTSLAQRLLRMLQ  153 (176)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777777664

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.78  E-value=8.5e-06  Score=63.55  Aligned_cols=83  Identities=18%  Similarity=0.250  Sum_probs=55.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--ccccccccCccEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--TLTSSYYRGAQGI   88 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~d~~   88 (211)
                      ...|-|.++|.||+||||+||.|-..+...+.|..|.+.-=..+++   .-+|.++|+||---..  ......   .-++
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~iv---LkGv  378 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIV---LKGV  378 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHH---hhce
Confidence            4568999999999999999999999998888888886532222221   1257889999932211  112222   2356


Q ss_pred             EEEEECCChhc
Q 028292           89 IMVYDVTRRDT   99 (211)
Q Consensus        89 ilv~d~~~~~s   99 (211)
                      |=|-.+.+|+.
T Consensus       379 VRVenv~~pe~  389 (572)
T KOG2423|consen  379 VRVENVKNPED  389 (572)
T ss_pred             eeeeecCCHHH
Confidence            77777777643

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.77  E-value=9.8e-05  Score=50.39  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=59.7

Q ss_pred             EEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 028292           17 LLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR   96 (211)
Q Consensus        17 ~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~   96 (211)
                      +.-|..|+|||++--.+...-........-.+.+.   ......+.+.++|+|+..  .......+..+|.++++.+.+.
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence            34578899999987776532111111111111110   000111678999999743  3334567888999999999864


Q ss_pred             hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           97 RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        97 ~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                       .++..... ..+.+....  ...++.+|+|+.+.
T Consensus        79 -~s~~~~~~-~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          79 -TSITDAYA-LIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             -hHHHHHHH-HHHHHHHhc--CCCCEEEEEeCCCC
Confidence             34444333 333333222  34567899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.72  E-value=0.00043  Score=49.81  Aligned_cols=112  Identities=13%  Similarity=0.163  Sum_probs=60.3

Q ss_pred             EEEEEeCCCccccc-------ccccccccC---ccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           62 KLAIWDTAGQERFR-------TLTSSYYRG---AQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        62 ~~~i~D~~g~~~~~-------~~~~~~~~~---~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                      .+.++|+||+-+.-       ++.+. +.+   .-++++++|..=- +++.-+.. .+..+.... .-.+|.|=|++|+|
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~h-l~~~~F~~c~Vylldsqf~vD~~KfiSG-~lsAlsAMi-~lE~P~INvlsKMD  175 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEH-LKQWNFNVCVVYLLDSQFLVDSTKFISG-CLSALSAMI-SLEVPHINVLSKMD  175 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHH-HhcccCceeEEEEeccchhhhHHHHHHH-HHHHHHHHH-HhcCcchhhhhHHH
Confidence            46788999975431       11111 111   2345666665321 11111111 222222333 46789999999999


Q ss_pred             CCCCcc--------------------cC---------HHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          131 KESERV--------------------VS---------KKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       131 ~~~~~~--------------------~~---------~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      +.....                    +.         .+-+..+..+++ +.|++....+.+.++.++..|-.++.
T Consensus       176 Llk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  176 LLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             HhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            843200                    00         001122333445 37899999999999988888877664

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=0.00025  Score=60.84  Aligned_cols=139  Identities=17%  Similarity=0.176  Sum_probs=71.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcce---ee---------------eEEEEEE-E-----------CCeEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIG---VD---------------FKIKHVA-L-----------GGKKMK   62 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~---~~---------------~~~~~~~-~-----------~~~~~~   62 (211)
                      --|+++|++|+||||++..|..... ......+.   .+               .....+. .           ....+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            3678999999999999999985321 00000000   00               0000000 0           012246


Q ss_pred             EEEEeCCCcccccc----ccccc--ccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           63 LAIWDTAGQERFRT----LTSSY--YRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        63 ~~i~D~~g~~~~~~----~~~~~--~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      +.|+||+|......    .....  ....+-.++|+|.+.. +.+.++...|....     ..+ +-=+|++|.|....-
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~-----~~~-i~glIlTKLDEt~~~  339 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA-----GED-VDGCIITKLDEATHL  339 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc-----cCC-CCEEEEeccCCCCCc
Confidence            89999999433221    11111  2234567899998753 33333332121110     001 235789999964332


Q ss_pred             ccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292          136 VVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      .    .+.......++|+.+++  +|++|
T Consensus       340 G----~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        340 G----PALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             c----HHHHHHHHHCCCeEEEe--cCCCC
Confidence            2    34456677788776664  34444

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.69  E-value=0.00038  Score=43.86  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=44.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEEC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-TSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~ilv~d~   94 (211)
                      +++.|..|+||||+...+...-..     .+  +..  ..++    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g--~~v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RG--KRV--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CC--CeE--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999998764321     11  111  1111    6888999985433321 13455678899999888


Q ss_pred             CCh
Q 028292           95 TRR   97 (211)
Q Consensus        95 ~~~   97 (211)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            654

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.67  E-value=0.00028  Score=39.68  Aligned_cols=44  Identities=23%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             CccEEEEEEECCCh--hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           84 GAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        84 ~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                      -.+++++++|++..  .+.++... ++..++..-  .++|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLS-LFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHH-HHHHHHHHc--CCCCEEEEEeccC
Confidence            35889999999864  56666666 555555443  4899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.67  E-value=0.00025  Score=57.38  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCccccc----cccccccc---CccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           61 MKLAIWDTAGQERFR----TLTSSYYR---GAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      +.+.|+||+|.....    .....++.   .-.-.++|++++.. ..+..+.       ..+. ..+ +--+|+||.|-.
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~-------~~f~-~~~-~~~vI~TKlDet  370 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY-------KHFS-RLP-LDGLIFTKLDET  370 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH-------HHhC-CCC-CCEEEEeccccc
Confidence            568999999964432    11222222   23456778888654 2222222       2221 112 235889999963


Q ss_pred             CCcccCHHHHHHHHHHhCCcEEEec
Q 028292          133 SERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ...    -.+.......++|+.+++
T Consensus       371 ~~~----G~i~~~~~~~~lPv~yit  391 (424)
T PRK05703        371 SSL----GSILSLLIESGLPISYLT  391 (424)
T ss_pred             ccc----cHHHHHHHHHCCCEEEEe
Confidence            332    246677778888877665

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=8.1e-05  Score=59.99  Aligned_cols=112  Identities=21%  Similarity=0.286  Sum_probs=74.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCC---------CC------CCcceeeeEEEEEEE----------------CCeE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE---------EL------SPTIGVDFKIKHVAL----------------GGKK   60 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~---------~~------~~~~~~~~~~~~~~~----------------~~~~   60 (211)
                      +.-|+.|+.+...|||||-..|....-.         .+      ....+.++.+..+..                ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            4557889999999999999999743210         00      011122222222111                3556


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhc--HHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT--FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      +-++++|.||+-+|.+.....++-.|++++|+|.-+.--  -+.+   +.+.+.    ..-+| +++.||.|.
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV---LrQA~~----ERIkP-vlv~NK~DR  162 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV---LRQAIA----ERIKP-VLVMNKMDR  162 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH---HHHHHH----hhccc-eEEeehhhH
Confidence            789999999999999999999999999999999877532  2222   333333    22244 677999995

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.64  E-value=0.00027  Score=45.54  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=47.7

Q ss_pred             EEEEc-CCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           16 LLLIG-DSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        16 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      |.|.| ..|+||||+...+...-.....+.       ..+..+.. +.+.++|+|+....  .....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~v-------l~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRV-------LLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcE-------EEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            56666 558999999888764332111111       11112211 67899999985432  233566778999999988


Q ss_pred             CChhcHHHHHH
Q 028292           95 TRRDTFTNLAD  105 (211)
Q Consensus        95 ~~~~s~~~~~~  105 (211)
                      + ..++..+..
T Consensus        72 ~-~~s~~~~~~   81 (104)
T cd02042          72 S-PLDLDGLEK   81 (104)
T ss_pred             C-HHHHHHHHH
Confidence            5 445555444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.60  E-value=0.00049  Score=54.15  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+|.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567799999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.00032  Score=55.38  Aligned_cols=133  Identities=15%  Similarity=0.176  Sum_probs=68.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCC-----------cceeeeEEEEEEE----------C-C
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSP-----------TIGVDFKIKHVAL----------G-G   58 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~-----------~~~~~~~~~~~~~----------~-~   58 (211)
                      ..-.|+++|++|+||||++..+...-.           +.+..           ..+..+... ...          . .
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~-~dp~dL~~al~~l~~~  283 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA-TSPAELEEAVQYMTYV  283 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec-CCHHHHHHHHHHHHhc
Confidence            345688999999999999999974211           11110           011111100 000          0 0


Q ss_pred             eEEEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           59 KKMKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      ..+.+.|+||+|.......    ...+.  -..+.+++|.++...  ..++.. +   +..+.  .-.+--+|+||.|..
T Consensus       284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~-i---~~~f~--~l~i~glI~TKLDET  355 (407)
T PRK12726        284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMT-I---LPKLA--EIPIDGFIITKMDET  355 (407)
T ss_pred             CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHH-H---HHhcC--cCCCCEEEEEcccCC
Confidence            2367899999996443221    11111  133566677766332  233322 2   22221  112335779999963


Q ss_pred             CCcccCHHHHHHHHHHhCCcEEEec
Q 028292          133 SERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ...    =.+.......++|+..++
T Consensus       356 ~~~----G~~Lsv~~~tglPIsylt  376 (407)
T PRK12726        356 TRI----GDLYTVMQETNLPVLYMT  376 (407)
T ss_pred             CCc----cHHHHHHHHHCCCEEEEe
Confidence            322    234456677788776665

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.57  E-value=0.00042  Score=55.48  Aligned_cols=133  Identities=19%  Similarity=0.235  Sum_probs=68.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC-C-----------CCCC-----------CcceeeeEEEE------EEECCeEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT-F-----------EELS-----------PTIGVDFKIKH------VALGGKKMKL   63 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~-~-----------~~~~-----------~~~~~~~~~~~------~~~~~~~~~~   63 (211)
                      ..-|+++|++||||||++..|.... .           +.+.           ...+.......      -.+....+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3468899999999999999997421 0           0000           01111111000      0001234568


Q ss_pred             EEEeCCCcccccc----ccccccc-----CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           64 AIWDTAGQERFRT----LTSSYYR-----GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        64 ~i~D~~g~~~~~~----~~~~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      .++||+|......    .+..++.     ...-.++|+|++...  +.+.. ......    .. -+-=+|++|.|-...
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~-~~~~f~----~~-~~~glIlTKLDEt~~  374 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLT-VLKAYE----SL-NYRRILLTKLDEADF  374 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHH-HHHHhc----CC-CCCEEEEEcccCCCC
Confidence            9999999543211    1111111     234578899987763  12222 222221    11 123478999996333


Q ss_pred             cccCHHHHHHHHHHhCCcEEEec
Q 028292          135 RVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ..    .+.......+.|+..++
T Consensus       375 ~G----~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        375 LG----SFLELADTYSKSFTYLS  393 (432)
T ss_pred             cc----HHHHHHHHHCCCEEEEe
Confidence            22    24456667788776664

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.56  E-value=0.00056  Score=46.42  Aligned_cols=26  Identities=38%  Similarity=0.588  Sum_probs=22.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      .-.+++.|++|+|||+|++.+...-.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34689999999999999999997653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.56  E-value=0.00032  Score=53.53  Aligned_cols=107  Identities=11%  Similarity=0.166  Sum_probs=68.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-------------
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-------------   74 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------   74 (211)
                      +...+..+++++|++|-|||++++++....-... ...            ...++|..+.+|.....             
T Consensus        56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED------------AERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            4455677899999999999999999998653211 110            12335666676652111             


Q ss_pred             -----------cccccccccCccEEEEEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           75 -----------RTLTSSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        75 -----------~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                                 .......++...+=++++|--..   -+...... +++.++...+..++|+|.+|+.
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~-~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE-FLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH-HHHHHHHHhhccCCCeEEeccH
Confidence                       11122345566777888885432   23334444 7777777787889999999865

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.54  E-value=0.00049  Score=56.27  Aligned_cols=150  Identities=15%  Similarity=0.190  Sum_probs=74.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcce---ee---------------eEEEEEEE------------CCeEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIG---VD---------------FKIKHVAL------------GGKKMK   62 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~---~~---------------~~~~~~~~------------~~~~~~   62 (211)
                      --++++|++||||||++..|..... ......++   .+               .....+..            .-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            4688999999999999999985321 00000000   00               00000000            011235


Q ss_pred             EEEEeCCCccccccc---ccccccC---ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292           63 LAIWDTAGQERFRTL---TSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV  136 (211)
Q Consensus        63 ~~i~D~~g~~~~~~~---~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (211)
                      +.++||+|.......   ....+..   ..-.++|+|.+...  ..    +.+....+. . ..+--+|+||.|....  
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~----l~~i~~~f~-~-~~~~g~IlTKlDet~~--  406 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DT----LNEVVQAYR-G-PGLAGCILTKLDEAAS--  406 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HH----HHHHHHHhc-c-CCCCEEEEeCCCCccc--
Confidence            789999994332210   0001111   12267888887542  22    222222222 1 2234577899996332  


Q ss_pred             cCHHHHHHHHHHhCCcEEEeccCCCCCH-HHHH----HHHHHHHHc
Q 028292          137 VSKKEGIDFAREYGCLFLECSAKTRVNV-EQCF----EELVLKILD  177 (211)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~~----~~i~~~~~~  177 (211)
                        .-.+.......++++.+++  +|++| +++.    ..+++.++.
T Consensus       407 --~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~  448 (484)
T PRK06995        407 --LGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFC  448 (484)
T ss_pred             --chHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence              2345566777788876664  45555 4432    234444444

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.51  E-value=8.2e-05  Score=52.90  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++|+|+|+||+||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.51  E-value=8.3e-05  Score=53.34  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .=|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            448999999999999999998753

>PRK08118 topology modulation protein; Reviewed

Probab=97.50  E-value=9.3e-05  Score=52.16  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999864

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.50  E-value=0.0001  Score=48.87  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

...

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.50  E-value=0.00086  Score=49.12  Aligned_cols=61  Identities=23%  Similarity=0.273  Sum_probs=37.4

Q ss_pred             EEEEEeCC-CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCC-CcEEEEEeCCCC
Q 028292           62 KLAIWDTA-GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD-CIKLLVGNKVDK  131 (211)
Q Consensus        62 ~~~i~D~~-g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~  131 (211)
                      .+.++||- |.+   ..-+.....+|.+|.|+|.+.. ++..... +..+..    .-+ .++.+|+||.|-
T Consensus       135 e~VivDtEAGiE---HfgRg~~~~vD~vivVvDpS~~-sl~taer-i~~L~~----elg~k~i~~V~NKv~e  197 (255)
T COG3640         135 EVVIVDTEAGIE---HFGRGTIEGVDLVIVVVDPSYK-SLRTAER-IKELAE----ELGIKRIFVVLNKVDE  197 (255)
T ss_pred             cEEEEecccchh---hhccccccCCCEEEEEeCCcHH-HHHHHHH-HHHHHH----HhCCceEEEEEeeccc
Confidence            34555553 222   2234445678999999999754 3433333 333333    345 899999999995

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.46  E-value=6.7e-05  Score=52.88  Aligned_cols=47  Identities=28%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKM   61 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      .-++|.|++|+|||||+++|+... ....+...++.....-.++|..|
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY   51 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDY   51 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCcee
Confidence            457899999999999999999876 33223333333334444444443

>PRK07261 topology modulation protein; Provisional

Probab=97.44  E-value=0.00012  Score=51.76  Aligned_cols=23  Identities=43%  Similarity=0.639  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+|+|+|++|+|||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998753

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.44  E-value=0.0023  Score=51.16  Aligned_cols=139  Identities=16%  Similarity=0.150  Sum_probs=72.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCC-----------CCcceeeeEEEEEE-------ECC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EEL-----------SPTIGVDFKIKHVA-------LGG   58 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~-----------~~~~~~~~~~~~~~-------~~~   58 (211)
                      .+-.|+++|++|+||||.+..|...-.               +.+           ....+..+......       -..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            346899999999999999998864211               000           00011111110000       011


Q ss_pred             eEEEEEEEeCCCcccccc----cccccccC---ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           59 KKMKLAIWDTAGQERFRT----LTSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~----~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      ..+.+.|+||+|......    ....++..   -+-.++|+|++...  ..+..    .+..+.  .--+-=+|++|.|-
T Consensus       253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~----~~~~~~--~~~~~~~I~TKlDe  324 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKE----IFHQFS--PFSYKTVIFTKLDE  324 (388)
T ss_pred             CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHH----HHHHhc--CCCCCEEEEEeccC
Confidence            235789999999544321    11112221   22578999998762  22222    223222  11133578999996


Q ss_pred             CCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292          132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      .....    -+.......++|+..++  +|++|
T Consensus       325 t~~~G----~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        325 TTCVG----NLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             CCcch----HHHHHHHHHCCCEEEEe--CCCCC
Confidence            33322    33455666777776554  45555

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.44  E-value=0.00018  Score=52.58  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=22.5

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .....-|+|+|++|||||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            335567889999999999999999754

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.41  E-value=0.00013  Score=49.82  Aligned_cols=21  Identities=38%  Similarity=0.601  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+++|++|||||||++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999853

...

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=6.4e-05  Score=55.53  Aligned_cols=163  Identities=17%  Similarity=0.164  Sum_probs=90.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCccccccccccccc----Cc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYR----GA   85 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~----~~   85 (211)
                      .....|++.|..+.  |++|++.....-....++...++....-.-.+ ..-..++|+++|......+..--+.    +.
T Consensus        43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~  120 (363)
T KOG3929|consen   43 KFEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT  120 (363)
T ss_pred             cceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence            35678899987765  99999988766555666665555444433333 2234579999986554433322221    22


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHh----------------------h--------------cCCCCCcEEEEEeCC
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDL----------------------Y--------------STNQDCIKLLVGNKV  129 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~----------------------~--------------~~~~~~p~ivv~nK~  129 (211)
                      -.+|++.|++.++.+....+-.+..++.                      .              .....+|+++|+.|.
T Consensus       121 ~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKY  200 (363)
T KOG3929|consen  121 FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKY  200 (363)
T ss_pred             hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccch
Confidence            4679999999986543221112221111                      0              022358999999999


Q ss_pred             CCCCCccc-----CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          130 DKESERVV-----SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       130 D~~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      |.-+..+-     .-+..+.++..+|......|++-..-...+-+.+.+..
T Consensus       201 DvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~Hla  251 (363)
T KOG3929|consen  201 DVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLA  251 (363)
T ss_pred             hhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhh
Confidence            97433221     12233445556677666667664333333333333333

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.35  E-value=0.00013  Score=51.12  Aligned_cols=22  Identities=23%  Similarity=0.596  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.34  E-value=0.00024  Score=40.94  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      ..+|.|+.|+|||||+.++...-+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            488999999999999998875433

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.33  E-value=0.001  Score=50.49  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=69.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-----------CCC-----------CCcceeeeEEEEEEE-----------CCeE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-----------EEL-----------SPTIGVDFKIKHVAL-----------GGKK   60 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-----------~~~-----------~~~~~~~~~~~~~~~-----------~~~~   60 (211)
                      -+|+++|++|+||||++..+...-.           +.+           ....+..+... ...           ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            5899999999999999998864311           000           00011111100 000           0124


Q ss_pred             EEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      +.+.|+||+|.......    +..++  .+.+-.++|+|++...  +++..    .+..+. . -.+-=+|++|.|....
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~----~~~~f~-~-~~~~~~I~TKlDet~~  226 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIE----IITNFK-D-IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHH----HHHHhC-C-CCCCEEEEEeecCCCC
Confidence            67899999996533211    11111  2346689999987431  12222    222222 1 2233578999996443


Q ss_pred             cccCHHHHHHHHHHhCCcEEEec
Q 028292          135 RVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ..    .+.......+.|+..++
T Consensus       227 ~G----~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        227 SG----ELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             cc----HHHHHHHHHCcCEEEEe
Confidence            22    34456667777776654

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.31  E-value=0.00042  Score=50.63  Aligned_cols=21  Identities=38%  Similarity=0.593  Sum_probs=17.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~   34 (211)
                      +-.+|+|+||+||||..+-+.
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~   23 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMS   23 (290)
T ss_pred             cceEEEcCCCCCccchhhhHH
Confidence            456899999999999877664

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.30  E-value=0.00027  Score=41.99  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.30  E-value=0.0033  Score=44.75  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68899999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.29  E-value=0.00024  Score=48.14  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57899999999999999998754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.28  E-value=0.00021  Score=52.74  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      |.++|++|||||||+|.+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999987543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.28  E-value=0.00021  Score=51.64  Aligned_cols=24  Identities=42%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      .++++|++|||||||++.+-+-+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            588999999999999999987654

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.28  E-value=0.0016  Score=53.41  Aligned_cols=45  Identities=13%  Similarity=0.231  Sum_probs=28.3

Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      ..+|+|=|+-+.-.++.. ..+...++.+......|+|++++-+-.
T Consensus       195 ~~liLveDLPn~~~~d~~-~~f~evL~~y~s~g~~PlIf~iTd~~~  239 (634)
T KOG1970|consen  195 KKLILVEDLPNQFYRDDS-ETFREVLRLYVSIGRCPLIFIITDSLS  239 (634)
T ss_pred             ceEEEeeccchhhhhhhH-HHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            345777777554333322 225666666665677899999987665

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.26  E-value=0.00078  Score=47.69  Aligned_cols=44  Identities=18%  Similarity=0.090  Sum_probs=28.7

Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      |++++|+|+.++..... .. +...+.  ....++|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~-i~~~~~--l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQ-VEEAVL--QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HH-HHHHHH--hccCCCCEEEEEehhhcCC
Confidence            78999999988743221 11 222221  1135689999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.00041  Score=54.28  Aligned_cols=101  Identities=18%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CC---------------------CCCcceeeeEEEEEEE-------------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EE---------------------LSPTIGVDFKIKHVAL-------------   56 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~---------------------~~~~~~~~~~~~~~~~-------------   56 (211)
                      ++=-|.++|..|+||||.+-.|....- ..                     ...-.+..++......             
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            445688999999999998888864211 00                     0011111122111111             


Q ss_pred             CCeEEEEEEEeCCCccccc-ccccc-----cccCccEEEEEEECCChhcHHHHHHHHHHHHH
Q 028292           57 GGKKMKLAIWDTAGQERFR-TLTSS-----YYRGAQGIIMVYDVTRRDTFTNLADIWAKEID  112 (211)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~-~~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~  112 (211)
                      ..+.+.+.|+||+|...-+ ++...     -.-..|-+|+|.|++-.+.-+.....+...+.
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd  241 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD  241 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence            2455789999999954322 11111     12246899999999987665555444655554

>PRK04195 replication factor C large subunit; Provisional

Probab=97.24  E-value=0.0032  Score=52.07  Aligned_cols=25  Identities=40%  Similarity=0.573  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .-.++|.|++|+||||+++.+.+..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4568999999999999999998754

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.23  E-value=0.0016  Score=42.22  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=55.0

Q ss_pred             EcCCCCcHHHHHHHHhhCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh
Q 028292           19 IGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR   97 (211)
Q Consensus        19 ~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~   97 (211)
                      -+..|+||||+...|...-... .......+.+     ..... .+.++|+|+...  ......+..+|.++++.+.+. 
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~~-D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~-   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFGD-DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL-   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCCC-CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-
Confidence            3566899999877775432211 1122111111     11111 688999998542  233446678899999988754 


Q ss_pred             hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           98 DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                      .+...... +.+.+..........+.+|+|+
T Consensus        77 ~s~~~~~~-~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKR-LLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHH-HHHHHHHcCCCCcCceEEEecC
Confidence            34555544 4555544331213456677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.23  E-value=0.00095  Score=48.44  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      |+|.|++|+||||+++.+++..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999988654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.23  E-value=0.00032  Score=55.53  Aligned_cols=25  Identities=40%  Similarity=0.610  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      -+++++|.+|+|||||++.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3789999999999999999997543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.21  E-value=0.00033  Score=46.99  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999999754

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.20  E-value=0.0038  Score=51.86  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -+++-|++|+||||.++.|....
T Consensus        47 iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35667999999999999998653

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.19  E-value=0.00038  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .|.|+|+.|+|||||++.|.+.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998753

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.18  E-value=0.00068  Score=52.23  Aligned_cols=143  Identities=16%  Similarity=0.179  Sum_probs=77.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCC------------------CCCccee--eeEEEEEEE--------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE------------------LSPTIGV--DFKIKHVAL--------------   56 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~------------------~~~~~~~--~~~~~~~~~--------------   56 (211)
                      .+++-|+++|-.|+||||-|-.|...-...                  +-..++.  ....+....              
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            458899999999999999998886421100                  0000000  011111111              


Q ss_pred             -CCeEEEEEEEeCCCccccccc-------ccccccCcc-----EEEEEEECCChhcH-HHHHHHHHHHHHhhcCCCCCcE
Q 028292           57 -GGKKMKLAIWDTAGQERFRTL-------TSSYYRGAQ-----GIIMVYDVTRRDTF-TNLADIWAKEIDLYSTNQDCIK  122 (211)
Q Consensus        57 -~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~d-----~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~p~  122 (211)
                       ....+.+.|+||+|.-.-...       ....+...+     =++++.|++-.+.- ..++. +...+...        
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~l~--------  287 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVGLD--------  287 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcCCc--------
Confidence             123356899999994322111       112223333     37888899877533 33333 54444432        


Q ss_pred             EEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292          123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus       123 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      =+|++|.|....-.+..    ..+..+++|+.++-.  |++++++.
T Consensus       288 GiIlTKlDgtAKGG~il----~I~~~l~~PI~fiGv--GE~~~DL~  327 (340)
T COG0552         288 GIILTKLDGTAKGGIIL----SIAYELGIPIKFIGV--GEGYDDLR  327 (340)
T ss_pred             eEEEEecccCCCcceee----eHHHHhCCCEEEEeC--CCChhhcc
Confidence            27899999744433322    345667888776643  45555543

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.18  E-value=0.0038  Score=44.41  Aligned_cols=85  Identities=21%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 028292           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS  138 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  138 (211)
                      ..+.+.|+|+|+....  .....+..+|.+++++..+.. +...+.. +...+..    .+.|+.+|+|+.|....   .
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~-~~~~l~~----~~~~~~vV~N~~~~~~~---~  159 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLER-AVELVRH----FGIPVGVVINKYDLNDE---I  159 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHH-HHHHHHH----cCCCEEEEEeCCCCCcc---h
Confidence            4578999999975322  333456789999999998743 4555544 4444442    35678899999996322   3


Q ss_pred             HHHHHHHHHHhCCcEE
Q 028292          139 KKEGIDFAREYGCLFL  154 (211)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (211)
                      .+++.++....+++++
T Consensus       160 ~~~~~~~~~~~~~~vl  175 (179)
T cd03110         160 AEEIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHHHcCCCeE
Confidence            4566677777888765

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK03839 putative kinase; Provisional

Probab=97.17  E-value=0.00036  Score=49.80  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +|+|+|.+|+||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999764

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.16  E-value=0.00041  Score=51.49  Aligned_cols=32  Identities=31%  Similarity=0.456  Sum_probs=26.4

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      .+.-+..++++|+|.+|||||+|+..++....
T Consensus         7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~~~   38 (241)
T PF04665_consen    7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYYLR   38 (241)
T ss_pred             hHhcCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            34455779999999999999999999986543

This is thought to be an ATPase involved in viral DNA packaging [].

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.16  E-value=0.00042  Score=46.64  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      -+++++|++|+|||++++.+...-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4689999999999999999987665

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PLN02200 adenylate kinase family protein

Probab=97.16  E-value=0.00056  Score=50.95  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=24.0

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ......++.|+|+|+|||||||+..+|..
T Consensus        37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         37 SSKEKTPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34445668899999999999999998875

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.16  E-value=0.00036  Score=51.23  Aligned_cols=24  Identities=38%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      -|.++|++|||||||++.+.+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            478999999999999999987554

>PRK06217 hypothetical protein; Validated

Probab=97.15  E-value=0.00043  Score=49.57  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+|+|+|.+|||||||.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999864

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.14  E-value=0.00041  Score=46.31  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999865

...

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.14  E-value=0.00041  Score=47.20  Aligned_cols=21  Identities=52%  Similarity=0.773  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            688999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.14  E-value=0.00037  Score=52.21  Aligned_cols=20  Identities=40%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      ++++|+.|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            67889999999999999987

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.14  E-value=0.00042  Score=49.74  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999764

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.12  E-value=0.006  Score=43.20  Aligned_cols=84  Identities=10%  Similarity=-0.010  Sum_probs=48.5

Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH
Q 028292           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKE  141 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  141 (211)
                      .+.|+|+|+....  .....+..+|.+|++.+.+.. ++..... +...+..   .......+++|+.+.....  ..+.
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~-~~~~~~~---~~~~~~~iv~N~~~~~~~~--~~~~  134 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADR-VKGLLEA---LGIKVVGVIVNRVRPDMVE--GGDM  134 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHH-HHHHHHH---cCCceEEEEEeCCcccccc--hhhH
Confidence            6889999975432  233446788999999988643 3444433 4444443   1224567889999863222  1222


Q ss_pred             HHHHHHHhCCcEE
Q 028292          142 GIDFAREYGCLFL  154 (211)
Q Consensus       142 ~~~~~~~~~~~~~  154 (211)
                      ...+...++.+++
T Consensus       135 ~~~~~~~~~~~v~  147 (179)
T cd02036         135 VEDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHHhCCCEE
Confidence            2344445566654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.11  E-value=0.00079  Score=52.57  Aligned_cols=94  Identities=23%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             eCCCcc-cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 028292           67 DTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF  145 (211)
Q Consensus        67 D~~g~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  145 (211)
                      +.||+. .+.......+...|+++.|+|+.+|.+...      ..+..+.  .+.|.++|+||+|+.+... ..+....+
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v--~~k~~i~vlNK~DL~~~~~-~~~W~~~~   86 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIV--KEKPKLLVLNKADLAPKEV-TKKWKKYF   86 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHH--ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence            346643 445566677889999999999999975432      2222222  4455599999999955543 34444455


Q ss_pred             HHHhCCcEEEeccCCCCCHHHHHH
Q 028292          146 AREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus       146 ~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ....+...+.++++.+.+...+..
T Consensus        87 ~~~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          87 KKEEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HhcCCCccEEEEeecccCccchHH
Confidence            555567778899988887777664

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.09  E-value=0.00047  Score=49.09  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.08  E-value=0.00054  Score=46.64  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998854

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14530 adenylate kinase; Provisional

Probab=97.07  E-value=0.00052  Score=50.46  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999964

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.07  E-value=0.00069  Score=48.24  Aligned_cols=23  Identities=39%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -|+|+|++|+|||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999998743

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13949 shikimate kinase; Provisional

Probab=97.06  E-value=0.00056  Score=48.30  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +|+|+|++|+|||||.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988753

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.05  E-value=0.00059  Score=49.01  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .-.++++|++|+|||||++.+++.-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3478999999999999999998643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.04  E-value=0.002  Score=43.39  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999999764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.04  E-value=0.00068  Score=49.58  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +.+.|.|.|++|||||||.+.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999999864

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.0005  Score=53.54  Aligned_cols=22  Identities=45%  Similarity=0.635  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6788999999999999998754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.02  E-value=0.00065  Score=48.29  Aligned_cols=21  Identities=38%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~   34 (211)
                      -.++|+|++|+|||||++.++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            378999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.01  E-value=0.00064  Score=50.40  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+++|+|+|+|||||||+.+.|...
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999999653

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.01  E-value=0.00065  Score=43.87  Aligned_cols=21  Identities=43%  Similarity=0.790  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~   34 (211)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357899999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14532 adenylate kinase; Provisional

Probab=97.00  E-value=0.00062  Score=48.89  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++|+++|+|||||||+..+|...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999753

>TIGR00235 udk uridine kinase

Probab=96.99  E-value=0.0009  Score=48.89  Aligned_cols=25  Identities=24%  Similarity=0.217  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +..-|+|.|++|+|||||++.+.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.98  E-value=0.0032  Score=47.81  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .|+|.|++|+||||+++.++..-
T Consensus        82 lilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhh
Confidence            48999999999999999998654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK00625 shikimate kinase; Provisional

Probab=96.97  E-value=0.00069  Score=47.99  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++|+++|.+||||||+.+.|...
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~   23 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKF   23 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999643

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.95  E-value=0.00075  Score=49.68  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57899999999999999999753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.95  E-value=0.00072  Score=49.01  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999874

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.94  E-value=0.00072  Score=49.59  Aligned_cols=21  Identities=52%  Similarity=0.733  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999987

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.94  E-value=0.00073  Score=48.39  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      -.|+++|.+||||||+.+.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999984

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.92  E-value=0.00083  Score=49.16  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.92  E-value=0.00077  Score=48.15  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -|+++|++|||||||+|-+.+-
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcC
Confidence            4789999999999999999863

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.91  E-value=0.00082  Score=47.44  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..-+.|+|.+|+|||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            446899999999999999999965

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.91  E-value=0.00087  Score=48.86  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.90  E-value=0.0009  Score=48.17  Aligned_cols=23  Identities=48%  Similarity=0.663  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998743

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.00081  Score=50.21  Aligned_cols=21  Identities=48%  Similarity=0.612  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -+.++|+.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            367899999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-54
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-49
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		8e-48
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-47
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-47
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-47
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-47
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-47
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-47
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-46
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-46
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-45
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-44
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		5e-44
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-43
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-43
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-43
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-43
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-42
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-42
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-42
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		8e-42
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-41
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		6e-41
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		8e-41
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-40
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		3e-40
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-40
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-40
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		7e-40
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-39
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-39
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-37
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-37
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-36
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-36
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		7e-36
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-35
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-35
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-35
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-35
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-35
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-35
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		8e-35
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-34
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-34
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-34
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-34
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-34
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		5e-34
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-32
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-32
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-30
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-30
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-30
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-30
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-30
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-29
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-29
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-29
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-29
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-29
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-29
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-29
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-29
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-29
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-29
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-29
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-29
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-29
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-29
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-29
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-29
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-29
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-29
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		7e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		8e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		9e-29
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-28
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-27
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-27
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-27
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		7e-27
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		8e-27
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-26
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-26
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-26
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-26
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-26
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-26
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-26
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-26
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-26
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		6e-26
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		9e-26
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-25
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-25
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-25
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-25
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-25
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-24
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-24
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		8e-24
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-23
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-23
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-23
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-23
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-23
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-22
1byu_A	216	Canine Gdp-Ran Length = 216		7e-22
2bku_A	177	Kap95p:rangtp Complex Length = 177		9e-22
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-21
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-21
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		4e-21
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-21
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		9e-21
1s1c_A	183	Crystal Structure Of The Complex Between The Human		9e-21
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-20
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-20
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-20
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-20
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-20
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-20
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-20
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-20
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-20
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-20
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-20
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		9e-20
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-19
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-19
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-19
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-19
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-19
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-19
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-19
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-19
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-19
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-19
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		4e-19
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		6e-19
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		9e-19
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-18
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-18
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		5e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		7e-18
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-17
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-17
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-17
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-17
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-17
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		4e-17
1mh1_A	186	Small G-Protein Length = 186		5e-17
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		6e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		6e-17
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		6e-17
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		6e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-17
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-17
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		7e-17
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		7e-17
4q21_A	189	Molecular Switch For Signal Transduction: Structura		8e-17
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-16
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-16
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-16
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-16
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-16
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-16
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-16
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-16
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-16
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-16
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-16
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-16
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-16
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-16
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-16
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-16
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-16
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-16
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-16
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-16
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-16
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-16
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		4e-16
1wq1_R	166	Ras-Rasgap Complex Length = 166		4e-16
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		4e-16
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-16
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-16
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		4e-16
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		4e-16
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		4e-16
6q21_A	171	Molecular Switch For Signal Transduction: Structura		4e-16
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		4e-16
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		5e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-16
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		5e-16
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-16
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-16
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		6e-16
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-16
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		8e-16
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		8e-16
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		9e-16
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		9e-16
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-15
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-15
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-15
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-15
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-15
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-15
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-15
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-15
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-15
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-15
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-15
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-15
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-15
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-15
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-15
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-15
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-15
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-15
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-15
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-15
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-15
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-15
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-15
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		7e-15
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		8e-15
2kb0_A	178	Cdc42(T35a) Length = 178		1e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-14
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-14
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-14
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		7e-14
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-13
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		4e-13
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		6e-13
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-12
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		8e-12
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		8e-12
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		9e-12
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-10
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		3e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		4e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-10
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-09
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-09
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-09
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-09
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-09
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		4e-09
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		6e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		6e-09
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-09
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		9e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		9e-09
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		1e-08
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		1e-08
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		3e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		4e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		4e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-08
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		5e-08
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		5e-08
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		6e-08
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		8e-08
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		9e-08
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		1e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-07
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-07
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-07
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		3e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-07
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		4e-07
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		4e-07
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		4e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-07
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-07
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		6e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-07
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		8e-07
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		8e-07
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		8e-07
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		8e-07
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		9e-07
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		9e-07
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-06
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		1e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		5e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-06
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		7e-06
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		1e-05
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-05
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		9e-05
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		1e-04
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		1e-04

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 3/169 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +  LVGNK+DKE
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
           + R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L
Sbjct: 135 N-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  189 bits (481), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 122/168 (72%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ +    TIGVDFKI+ ++L  K +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT RD+F N+   W +EID Y+  ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKLLVGN 122
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D  S+RVV+  EG + A  +G  F+E SAK   NVEQ F  +  +I
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 122/173 (70%), Gaps = 3/173 (1%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  K
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 124
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           LLVGNK D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y++ ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y++ ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/173 (56%), Positives = 122/173 (70%), Gaps = 3/173 (1%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGK+ LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  K
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 124
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           LLVGNK D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 24  SSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83
Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  K
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 141
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           LLVGNK D  +++VV      +FA   G  FLE SAK   NVEQ F     +I
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/168 (58%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/168 (58%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 138
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+D LFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVG 
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGI 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  176 bits (447), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 134/206 (65%), Gaps = 9/206 (4%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N   +W +EID Y+T+   +KLLVGN
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSS 187
           K D + +RVV      +FA      FLE SA    NVE  F  +  +I ++ S  +   +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 188 GVKK----NIFKESPPQNDASTTGCC 209
             KK    N+      Q+  +T GCC
Sbjct: 182 TQKKEDKGNV--NLKGQSLTNTGGCC 205

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N   +W +EID Y+T+   +KLLVGN
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           K D + +RVV      +FA      FLE SA    NVE  F  +  +I ++ S
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  174 bits (440), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N   +W +EID Y+T+   +KLLVGN
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 134
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D + +RVV      +FA      FLE SA    NVE  F  +  +I
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 114/162 (70%), Gaps = 3/162 (1%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           FRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGNK D  +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCDLTT 118
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++VV      +FA   G  FLE SAK   NVEQ F  +  +I
Sbjct: 119 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDT 68
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQE FR++T SYYRGA G ++VYD+TRRDTF +L   W ++   +S N + + +L+GNK
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNK 124
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
            D ES R V K+EG  FARE+G +F+E SAKT  NVE+ F
Sbjct: 125 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ +++  D  K+++GNK
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNK 122
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            D   +R VSK+ G   A +YG  F+E SAK  +NVE  F  L   I
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  169 bits (429), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 115/168 (68%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWD 67
             DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWD
Sbjct: 2   HMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ +++  D  K+++GN
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGN 119
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D   +R VSK+ G   A +YG  F+E SAK  +NVE  F  L   I
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 118/174 (67%), Gaps = 13/174 (7%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIW 66
           +++D+LFKLL+IGDSGVGKS+LLL F  +TF      TIGVDFKI+ V + G+K+KL IW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC---IKL 123
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI     NQ+C    ++
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRI 117
Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ---CFEELVLK 174
           LVGNK D    +VV  ++   FA + G    E SAK  VNVE+   C  ELVL+
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 127/189 (67%), Gaps = 7/189 (3%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
           ASS + + +D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK
Sbjct: 9   ASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68
Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N + 
Sbjct: 69  VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEA 126
Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF---EELVLKILD 177
             LLVGNK D E+ RVV+  +G   A+E G  F+E SAK   NV + F    +L+ + +D
Sbjct: 127 QLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185
Query: 178 TPSLLSEGS 186
           +  L+  G+
Sbjct: 186 SNKLVGVGN 194

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  166 bits (421), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGK 59
           + S+T+   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+
Sbjct: 3   LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN +
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPN 120
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            + +L+GNK D E++R V+ +E   FA E G LFLE SAKT  NVE  F E   KI
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 3/158 (1%)
Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAG 70
           YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V + GK++KL IWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QE FR++T SYYRGA G ++VYD+TRR+TF +L   W ++   +S++   I +L+GNK D
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVI-MLIGNKSD 137
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
            ES R V ++EG  FARE+G +F+E SAKT  NVE+ F
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 3/175 (1%)
Query: 7   QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
           Q  FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL I
Sbjct: 17  QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           WDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LV
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILV 134
Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           GNK D E ERVV  ++G   A + G  F E SAK  ++V Q FE LV  I D  S
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNK 119
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
            D E ERVVS + G   A   G  F E SAK  +NV+Q FE LV
Sbjct: 120 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  162 bits (411), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 121/203 (59%), Gaps = 10/203 (4%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
             FDY FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IW
Sbjct: 3   HXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAG ER+RT+T++YYRGA G I+ YD+T  ++F  + D W+ +I  YS +   + LLVG
Sbjct: 63  DTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVG 120
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI-------LDTP 179
           NK D E ERVVS + G   A   G  F E SAK  +NV+Q FE LV  I       LDT 
Sbjct: 121 NKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTA 180
Query: 180 SLLSEGSSGVKKNIFKESPPQND 202
                G+    +   +++PP  D
Sbjct: 181 DPAVTGAKQGPQLTDQQAPPHQD 203

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
           D E+ RVV+  +G   A+E G  F+E SAK   NV + F
Sbjct: 119 DMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 112/173 (64%), Gaps = 3/173 (1%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMK 62
           +T+   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+K+K
Sbjct: 21  ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 80
Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQ RFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN + + 
Sbjct: 81  LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVI 138
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           +L+GNK D E++R V+ +E   FA E G LFLE SAKT  NVE  F E   KI
Sbjct: 139 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 124/173 (71%), Gaps = 4/173 (2%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLA 64
           S +  D+  ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GKK++L 
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y++ +D   LL
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLL 136
Query: 125 VGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKIL 176
           VGNK+D E++R +++++G  FA++  G  F E SAK   NV++ F +LV  IL
Sbjct: 137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
           D E+ RVV+  +G   A+E G  F+E SAK   NV + F
Sbjct: 119 DXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  160 bits (404), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL +WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
           D E+ RVV+  +G   A+E G  F+E SAK   NV + F
Sbjct: 119 DXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 4/157 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL +WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           ERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK D 
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM 124
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
           E+ RVV+  +G   A+E G  F+E SAK   NV + F
Sbjct: 125 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 160

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 111/163 (68%), Gaps = 3/163 (1%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           DY+FKLLLIG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS +   + +LVGNK 
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKC 137
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           D E ERVV  ++G   A + G  F E SAK  +NV+Q FE LV
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 116/172 (67%), Gaps = 3/172 (1%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLA 64
           S +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL 
Sbjct: 19  SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 78
Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y++N+  I +L
Sbjct: 79  IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITVL 136
Query: 125 VGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           VGNK+D    R VS++   +F+      +LE SAK   NVE+ F +L  +++
Sbjct: 137 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
           A  T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK 
Sbjct: 18  AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77
Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +K  IWDTAGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + 
Sbjct: 78  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNI 135
Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + +LVGNK D    R V   E   FA + G  F+E SA    NVE  F+ ++ +I
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 4/170 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKM-KLAIWD 67
           +DYLFK++LIGDSGVGKS LL  FT D F  E   TIGV+F  K + L   K+ K  IWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQER+R +TS+YYRGA G ++VYD+T++++F N+ + W KE+   + + + + LLVGN
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELR-DNADSNIVILLVGN 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           K D +  RV++  +   +A++    F+E SA    NVE  F +L+ +I +
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYN 171

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 107/161 (66%), Gaps = 4/161 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           +D  FK++L+GDSGVGK+ LL+ F    F       T+G+DF+ K + + G K+KL +WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   +L+GN
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYA-QHDVALMLLGN 124
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
           KVD   ERVV +++G   A+EYG  F+E SAKT +NV+  F
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
           A  T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK 
Sbjct: 18  AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77
Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +K  IWDTAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + 
Sbjct: 78  IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNI 135
Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + +LVGNK D    R V   E   FA + G  F+E SA    NVE  F+ ++ +I
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGNK
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 134
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            D    R V   E   FA + G  F+E SA    NVE  F+ ++ +I
Sbjct: 135 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K + +GGK +KL IW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L + W  +  + ++ Q+ + +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 122
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           NK D +++R V+  E   FA+E   +FLE SA T  NVE+ F +   KIL+
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 119
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            D    R V   E   FA +    F+E SA    NVE+ F+ ++ +I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWD
Sbjct: 4   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGN
Sbjct: 64  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D    R V   E   FA + G  F+E SA    NVE  F+ ++ +I
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/172 (44%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKL 63
           T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K 
Sbjct: 3   TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 62
Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
            IWDTAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + +  
Sbjct: 63  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIX 120
Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           LVGNK D    R V   E   FA + G  F+E SA    NVE  F+ ++ +I
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K + +GGK +KL IW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L + W  +  + ++ Q+ + +L G
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 123
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           NK D +++R V+  E   FA+E   +FLE SA T  +VE+ F +   KIL+
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + +  LVGN
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGN 118
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D    R V   E   FA + G  F+E SA    NVE  F+ ++ +I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 90/116 (77%), Gaps = 3/116 (2%)
Query: 16  LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           LLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGNK D
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +KL IWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFR++T SYYRGA G ++VYD+T R+T+ +LA        L S N   + +L GNK 
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           D + ER V+  E   FA+E   +FLE SA T  NVE+ F +    IL+
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           ++DYLFK++LIGDSGVGKS LL  FT+D F  E   TIGV+F  + + +  KK+K  IWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVG 126
           TAG ER+R +TS+YYRGA G ++VYD+++  ++ N  + W  E  L     D + + L+G
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTE--LRENADDNVAVGLIG 122
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           NK D    R V   E  +FA E   LF E SA    NV++ F EL++ I    S
Sbjct: 123 NKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 117/204 (57%), Gaps = 7/204 (3%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK 59
           M+S     ++D LFK++LIGDSGVGKS LL  FT + F  +   TIGV+F  + + + GK
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           ++K  IWDTAGQER+R +TS+YYRGA G ++VYD+++  ++ N  + W  E  L     D
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLSE--LRENADD 117
Query: 120 CIKL-LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
            + + L+GNK D    R V  +E   FA+E   LF E SA    NV++ FEEL+  I   
Sbjct: 118 NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177
Query: 179 PS--LLSEGSSGVKKNIFKESPPQ 200
            S   +  G S    N    S P 
Sbjct: 178 VSKHQMDLGDSSANGNANGASAPN 201

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 112/179 (62%), Gaps = 8/179 (4%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
            S    +++D+LFKL+L+GD+ VGK+ ++  F +  F E    TIGVDF +K + + GK+
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQERFRT+T SYYR A G I+ YD+T+R +F ++   W +++  Y+   + 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135
Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCF----EELVLK 174
           ++LL+GNK D    R VS  E    A  Y  L  +E SAK   NVE+ F     EL+++
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 114/171 (66%), Gaps = 3/171 (1%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K + +GGK +KL IW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAG ERFR++T SYYRGA G ++VYD+T R+T+  L + W  +  + ++ Q+ + +L G
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 120
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           NK D +++R V+  E   FA+E   +FLE SA T  +VE+ F +   KIL+
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKL 63
           +  ++++++FK++LIG+SGVGK+ LL  FT + F   S  TIGV+F  + V LG   +K 
Sbjct: 2   SHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 61
Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-K 122
            IWDTAG ER+R +TS+YYRGA G ++V+D+T+  T+  + + W KE  LY   +  I  
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVV 118
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           +LVGNK D    R V  +E   FA   G LFLE SA    NVE  FE ++ +I 
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 5/171 (2%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           ++++++FK++LIG+SGVGK+ LL  FT + F   S  TIGV+F  + V LG   +K  IW
Sbjct: 20  EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLV 125
           DTAG ER+R +TS+YYRGA G ++V+D+T+  T+  + + W KE  LY   +  I  +LV
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLV 136
Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           GNK D    R V  +E   FA   G LFLE SA    NVE  FE ++ +I 
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 6/158 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+G++ VGKS+++L F S+ F E   PTIG  F  + V +    +K  IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           F +L   YYR AQ  ++VYDVT+  +F   A  W KE+     ++D I  LVGNK+D   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELH-EQASKDIIIALVGNKIDXLQ 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
           +  ER V+++EG   A E G LF E SAKT  NV   F
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  DTF   A  W KE+   ++    I  L GNK D  
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIA-LAGNKADLA 121
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 111/181 (61%), Gaps = 16/181 (8%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK-------- 59
           ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V    +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 60  --KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYS 115
             K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W  ++  + Y 
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYC 139
Query: 116 TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            N D +  L+GNK D   +R V++++  + A +YG  + E SA T  NVE+  E L+  I
Sbjct: 140 ENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
Query: 176 L 176
           +
Sbjct: 198 M 198

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D F+  +SPTIG  F  K V  G +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RF +L   YYRG+   ++VYD+T++D+F  L   W KE+  +   ++ +  + GNK D  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCDLS 141
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             R V  K+  ++A   G + +E SAK  +N+E+ F+ +  +I
Sbjct: 142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T ++TF   A  W KE+   ++    I  L GNK D  
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIA-LAGNKADLA 126
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R+V  +E   +A +   LF+E SAKT +NV   F  +  K+
Sbjct: 127 NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TI   F  + V L    +K  IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  DTF   A  W KE+   ++    I  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIA-LAGNKADLA 123
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 123/208 (59%), Gaps = 26/208 (12%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
           S +  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V        
Sbjct: 2   SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55  ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
              GK  K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE- 169
            + Y  N D +  L+GNK D   +R V++++  + A +YG  + E SA T  NVE+  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 --ELVLKILD-------TPSLLSEGSSG 188
             +L++K ++        P  ++ G+SG
Sbjct: 179 LLDLIMKRMEKCVEKTQVPDTVNGGNSG 206

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y FK++L+G+  VGK++L+L +  + F +    T+G  F  K + +GGK++ LAIWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
            E ER VS +E   +A   G      SAK    +E+ F +L  ++++T
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  DTF   A  W KE+   ++    I  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIA-LAGNKADLA 123
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           S+R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D+F+  ++PTIG  F  K V    +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 123
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
             R V +++  D+A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 124 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 169

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 112/184 (60%), Gaps = 12/184 (6%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
           S S  ++DYL K L +GDSGVGK+++L  +T   F  +   T+G+DF+ K V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 55  -ALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID 112
            A+G G+++ L +WDTAG ERFR+LT++++R A G ++++D+T   +F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120
Query: 113 LYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           +++ +++   +L GNK D E +R V ++E  + A +YG  + E SA    N+    E L+
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
Query: 173 LKIL 176
             I+
Sbjct: 181 DLIM 184

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 113/186 (60%), Gaps = 16/186 (8%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVAL------ 56
           S +  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V        
Sbjct: 2   SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57  --GGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
              GK  K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170
            + Y  N D +  L+GNK D   +R V++++  + A +YG  + E SA T  NVE+  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 171 LVLKIL 176
           L+  I+
Sbjct: 179 LLDLIM 184

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF E SAKT  NV + F  +  K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 110/182 (60%), Gaps = 16/182 (8%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVAL------ 56
           S +  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V        
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57  --GGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
              GK  K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170
            + Y  N D +  L+GNK D   +R V++++  + A +YG  + E SA T  NVE+  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 171 LV 172
           L+
Sbjct: 179 LL 180

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 110/182 (60%), Gaps = 16/182 (8%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVAL------ 56
           S +  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V        
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57  --GGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
              GK  K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170
            + Y  N D +  L+GNK D   +R V++++  + A +YG  + E SA T  NVE+  E 
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 171 LV 172
           L+
Sbjct: 179 LL 180

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD G GKS+L+L F  D F E    TIG  F  + +A+    +K  IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           + +L   YYRGA   I+V+DVT + +F   A  W +E+     N + +  L GNK D   
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQG-NPNMVMALAGNKSDLLD 131
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            R V+ ++   +A+E G  F+E SAKT  NV++ F E+  ++
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D+F+  ++PTIG  F  K V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
             R V +++  D+A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y FK++L+G+  VGK++L+L +  + F +    T+   F  K + +GGK++ LAIWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 136
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
            E ER VS +E   +A   G      SAK    +E+ F +L  ++++T
Sbjct: 137 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 184

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y FK++L+G+  VGK++L+L +  + F +    T+   F  K + +GGK++ LAIWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
            E ER VS +E   +A   G      SAK    +E+ F +L  ++++T
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 123
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+
Sbjct: 124 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F       +K ID   T +  D I +LVGNK D
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQT----SKWIDDVRTERGSDVIIMLVGNKTD 118
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
              +R ++ +EG   A+E   +F+E SAKT  NV+Q F  +   +L+
Sbjct: 119 LADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+ +G+  VGK++++  F  DTF+     TIG+DF  K + L    ++L +WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR+L  SY R +   I+VYD+T R +F N    W ++I L    +D I  LVGNK D  
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTDLG 119
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             R V+ +EG   A+EY   F E SAK   N++  F++   K+
Sbjct: 120 DLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
              +R VS +EG   A+E   +F+E SAK   NV+Q F  +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F       +K ID   T +  D I +LVGNK D
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQT----SKWIDDVRTERGSDVIIMLVGNKTD 130
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
              +R VS +EG   A+E   +F+E SAK   NV+Q F  +
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 11/201 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 129
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVK 190
              +R VS +EG   A+E   +F+E SAK   NV+Q F  +   +   P + S      +
Sbjct: 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL---PGMESTQDRSRE 186
Query: 191 KNI-FKESPPQNDASTTGCCS 210
             I  K   PQ    + G CS
Sbjct: 187 DMIDIKLEKPQEQPVSEGGCS 207

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 117
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
              +R VS +EG   A+E   +F+E SAK   NV+Q F  +
Sbjct: 118 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T+ D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 121
Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
            ERVV K++G + AR++  C FLE SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           LFK++L+GD GVGKS+L+  + ++ F+ +L  TIGV+F  K + + G  + + IWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERFR+L + +YRG+   ++ + V    +F NL++ W KE   Y+  ++      +++GNK
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 127
Query: 129 VDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
           +D  SER VS +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 128 IDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           LFK++L+GD GVGKS+L+  + ++ F+ +L  TIGV+F  K + + G  + + IWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERFR+L + +YRG+   ++ + V    +F NL++ W KE   Y+  ++      +++GNK
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 125
Query: 129 VDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
           +D  SER VS +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 126 IDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 108/173 (62%), Gaps = 12/173 (6%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK-LAIWDTAG 70
           + K++++GDSGVGK++L+  + +D + ++   TIG DF  K V + G K+  + +WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVG 126
           QERF++L  ++YRGA   ++VYDVT   +F N+   W  E  L   N +  +    +++G
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEF-LVHANVNSPETFPFVILG 125
Query: 127 NKVD-KESERVVSKKEGIDFAREYG--CLFLECSAKTRVNVEQCFEELVLKIL 176
           NK+D +ES+++VS+K   + A+  G   LFL  SAK  +NV+  FEE+    L
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSAL 177

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T+ D   +LVGNK D E
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 123
Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
            ERVV K++G + AR++  C FLE SAK+++NV + F +LV +I
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++L GD+ VGKS+ L+    + F E +S T+GVDF++K + + G++  L +WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
           RFR++  SY+R A G++++YDVT   +F N+ + W   I+  + ++    +LVGNK D  
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPIMLVGNKADIR 146
Query: 131 ----KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
                E ++ V    G   A  YG LF E SAK   N+ +    L  ++
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F +E  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
            ERVV K++G + AR++  C FLE SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 7/169 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++L+GD GVGKS+L+  + ++ F+  +  TIGV+F  + + + G+ + L IWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L + +YRGA   ++ + V  R +F NL + W KE   Y+  +D      +++GNK
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 129 VDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           VDKE +R V+ +E   +  E G   +LE SAK   NV   FEE V ++L
Sbjct: 126 VDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
            ERVV K++G + AR++  C FLE SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 11/200 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 132
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVK 190
              +R VS +EG   A+E   +F+E SAK   NV+Q F  +   +   P + S      +
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL---PGMESTQDRSRE 189
Query: 191 KNI-FKESPPQNDASTTGCC 209
             I  K   PQ    + G C
Sbjct: 190 DMIDIKLEKPQEQPVSEGGC 209

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           +D E+ +V +K+       +    + E SAK  +NVEQ F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           +D E+ +V +K+       +    + E SAK  +NVEQ F+ +    L
Sbjct: 127 IDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           LFK++L+GD GVGKS+L+  + ++ F+ +L  TIGV+F  K + + G  + + IWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERFR+L + +YRG+   ++ + V    +F NL++ W KE   Y+  ++      +++GNK
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 129
Query: 129 VDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKILDT 178
            D + ER VS +E   + ++ G   + E SAK   NV   FEE V +IL T
Sbjct: 130 TDIK-ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
              +R VS +EG   A+E   +F+E SAK   NV+Q F  +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           +D E+ +V +K+       +    + E SAK  +NVEQ F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           +D E+ +V +K+       +    + E SAK  +NVEQ F+ +    L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  106 bits (265), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FK+++IGDS VGK+ L   F +  F + +  TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 72  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ERFR ++   YYR    ++ VYD T   +F +L   W +E   +    D  ++LVGNK D
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 147
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKT---RVNVEQCFEELVLKI 175
             S   V       FA  +     E SAK      +VE  F  L  K+
Sbjct: 148 LRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FK+++IGDS VGK+ L   F +  F + +  TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 72  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D  ++LVGNK D
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 138
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKT---RVNVEQCFEELVLKI 175
             S   V       FA  +     E SAK      +VE  F  L  K+
Sbjct: 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 65
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV-GNKVD 130
           E +  +  +Y+R  +G ++V+ +T  ++FT  A+ + ++I      +D I LLV GNK D
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 124
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            E  R V  +E    A E+G  ++E SAKTR NV++ F +L+ +I
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 76
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 135
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           E +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 64
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 123
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           E +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 61
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV-GNKVD 130
           E +  +  +Y+R  +G ++V+ +T  ++FT  A+ + ++I      +D I LLV GNK D
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 120
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            E  R V  +E    A E+G  ++E SAKTR NV++ F +L+ +I
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 72
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 131
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           E +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 121
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           E +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 64
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 123
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           E +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+   PT+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+   PT+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 10/182 (5%)
Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGK 59
           +S +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G  
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-- 62
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 119
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
              +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P
Sbjct: 120 IPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
Query: 180 SL 181
           +L
Sbjct: 178 NL 179

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 10/182 (5%)
Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLL-LSFTSDTFEELSPTIGVDFK--IKHVALGGK 59
           +S +Q E    FKL+L+GD G GK+T +    T ++ ++   T+GV+    + H   G  
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRG-- 62
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 119
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
              +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P
Sbjct: 120 IPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
Query: 180 SL 181
           +L
Sbjct: 178 NL 179

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           S R V  K+  D AR YG  F+E SAKTR  V+  F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           S R V  K+  D AR YG  F+E SAKTR  V+  F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 127
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 128 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+ +DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAG 70
           FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +K  +WDTAG
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIKFNVWDTAG 61
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 118
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 119 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE++  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ I  + + GK+++LA+WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII--LVGNKKDLRQ 143
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A       +LECSAKT+  V + FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 10/183 (5%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGG 58
            S  +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G 
Sbjct: 1   GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG- 59
Query: 59  KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118
             +K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    +
Sbjct: 60  -PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCE 115
Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
           +   +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  
Sbjct: 116 NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 173
Query: 179 PSL 181
           P+L
Sbjct: 174 PNL 176

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQ 71
            K++++GD   GK++L   F  +TF ++   TIG+DF ++ + L G   + L IWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW--AKEIDLYSTNQDCIKLLVGNKV 129
                +   Y  GAQG+++VYD+T   +F NL D +   K++   S  Q  +  LVGNK+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-LVGNKI 125
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           D E  R +  ++ + F +E G      SAKT  +V  CF+++  +IL
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ I  + + GK+++LA+WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 143
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A       +LECSAKT+  V + FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +L GNKVD +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD G GK+T +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 129
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
             +V  K + I F R+    + + SAK+  N E+ F  L  K+   P L
Sbjct: 130 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD G GK+T +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
             +V  K + I F R+    + + SAK+  N E+ F  L  K+   P L
Sbjct: 123 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD G GK+T +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 121
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
             +V  K + I F R+    + + SAK+  N E+ F  L  K+   P L
Sbjct: 122 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
           SS +      + K +++GD  VGK+ LL+S+ +D F EE  PT+  D     V +GGK+ 
Sbjct: 8   SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQY 66
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
            L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N    
Sbjct: 67  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-- 124
Query: 122 KLLVGNKVDKE------------SERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCF 168
            LL+G ++D               E+ +  ++G   A+E G C ++ECSA T+  ++  F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
Query: 169 EELVLKILDTP 179
           +E ++ IL TP
Sbjct: 185 DEAIIAIL-TP 194

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K++++G+  VGKS+++  +    F ++   TIGVDF  + + +  + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            F  +T +YYRGAQ  ++V+  T R++F  ++  W +++   +   D    LV NK+D  
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKIDLL 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            +  +  +E    A+     F   S K  +NV + F+ L  K L
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAG 70
           FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +K  +WDTAG
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIKFNVWDTAG 64
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 65  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 121
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
            +  +V  K + I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 122 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLA 64
           S        K + +GD  VGK+ +L+ +TS+ F  +  PT+  +F   +VA+ G+ + L 
Sbjct: 2   SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLG 60
Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           +WDTAGQE +  L    YRGA   ++ + +  + ++ N+   W  E+  ++ N   +  L
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--L 118
Query: 125 VGNKVDKESER--------VVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKI 175
           VG K+D   ++        V++  +G +  ++ G   ++ECS+KT+ NV+  F+  +  +
Sbjct: 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
Query: 176 LDTP 179
           L  P
Sbjct: 179 LQPP 182

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F  +  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +       Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V   EG D A   G   ++ECSAKT+  V + FE
Sbjct: 124 DEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ I  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A       +LECSAKT+  V + FE
Sbjct: 124 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 15/176 (8%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
             K + +GD  VGK+ +L+S+TS+TF  +  PT+  +F   +V + G  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQ 64
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  L    YRGA   I+ + +  + ++ N+A  W  E+  Y+     I  LVG K+D 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDL 122
Query: 132 ESER----------VVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFEELVLKIL 176
             ++           ++  +G +  +  G  +++ECS+KT+ NV+  F+  +  +L
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    K  +  V  +EG D A   G   ++ECSAKT+  V + FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++L+GD G GK++LL+ F    F E  +PT+   + + ++ + GK + L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-----------K 122
           +  L   +Y  A  +++ +DVT  ++F N+ + W  E++ +      I           K
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEE 170
            LV NK+ +     V+   G + AR  G + +LECSA+   NV   F+E
Sbjct: 155 SLV-NKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 4/179 (2%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIG-VDFKIKHVALGGKKMKL 63
           S +  +  +K+ LIGD GVGK+T +       FE+  + T+G V+  +  +   G  +K 
Sbjct: 4   SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63
Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
            +WDTAGQE+   L   YY GA G I+ +DVT R T  NLA  W KE      N+  I +
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI-V 121
Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182
           +  NK+D ++ + +SKK  ++  +     + E SAKT  N    F  L       P L+
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  L    Y     I+M + V   D+  N+ + W  E+  +  N   I  LV NK D  S
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKDLRS 143
Query: 134 ERVVS------KKEGI--DFAREYGCL-----FLECSAKTRVNVEQCFE 169
           +  V       K+E +  D  R          +LECSAKT+  V + FE
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 26  KSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
           KS L + F    F  +  PTI  D   K   +  +  +L I DTAGQE F  +   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 85  AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID 144
            +G ++V+ VT R +F  +   + ++I       +   +L+GNK D + +R V+++EG  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ 135
Query: 145 FAREYGCLFLECSAKTRVNVEQCFEELV 172
            AR+    ++E SAK R+NV+Q F ELV
Sbjct: 136 LARQLKVTYMEASAKIRMNVDQAFHELV 163

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
             K + +GD  VGK+ LL+S+TS+TF  +  PT+  +F   +V + G  + L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  L    YRGA   I+ + +  + ++ N++  W  E+  Y+     +  LVG K+D 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDL 124
Query: 132 ESER----------VVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFEELVLKIL 176
             ++           ++  +G +  +  G   ++ECS+K++ NV+  F+  +  +L
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 26  KSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
           KS L + F    F  +  PTI  D   K  ++ G   +L I DTAGQE F  +   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 85  AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID 144
             G ++V+ +  R +F  +  ++ + + +   + D   +LVGNK D ES+R V + E   
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEASA 139
Query: 145 FAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           F   +   + E SAK R+NV++ FE+LV  +
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 43/200 (21%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGK------------- 59
           +K +L+G+S VGKS+++L  T DTF E  + TIG  F    V L                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 60  ------------------------KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 95
                                    +K  IWDTAGQER+ ++   YYRGA   I+V+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 96  RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLE 155
             +T  + A  W  ++ + S   + I +LV NK+DK   + V   E   +A++   LF++
Sbjct: 128 NSNTL-DRAKTWVNQLKISS---NYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQ 182
Query: 156 CSAKTRVNVEQCFEELVLKI 175
            SAKT  N++  F  L  +I
Sbjct: 183 TSAKTGTNIKNIFYMLAEEI 202

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 3/174 (1%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 125
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSS 187
           ERV+S +EG   A  +   FLE SAK        F  ++L+        S+G S
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
            +
Sbjct: 181 PV 182

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
            +
Sbjct: 181 PV 182

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
             K + +GD  VGK+ +L+S+T +TF  +  PT+  +F   +V + G  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQ 64
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  L    YRGA   ++ + +  + ++ N+   W  E+  Y+     +  LVG K+D 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLDL 122
Query: 132 ESER----------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
             ++           ++  +G +  +  G + +LECS+KT+ NV+  F+  +
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 122
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182
Query: 180 SL 181
            +
Sbjct: 183 PV 184

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 124
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 125 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184
Query: 180 SL 181
            +
Sbjct: 185 PV 186

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 125
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174
           ERV+S +EG   A  +   FLE SAK        F  ++L+
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
            +
Sbjct: 181 PV 182

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
            +
Sbjct: 181 PV 182

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           S R V  K+  D AR YG  F+E SAKTR  V+  F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           S R V  K+  D AR YG  F+E SAKTR  V+  F  LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 120
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174
           ERV+S +EG   A  +   FLE SAK        F  ++L+
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 123
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174
           ERV+S +EG   A  +   FLE SAK        F  ++L+
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 19/198 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKN 192
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I              +  
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-------------QHK 167
Query: 193 IFKESPPQNDASTTGCCS 210
           + K +PP  D S  GC S
Sbjct: 168 LRKLNPP--DESGPGCMS 183

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 133 S-----ERVVSKK-------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
                 ER+  KK       +G+  ARE G + +LECSA T+  ++  F+E +  +L
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 133 S-----ERVVSKK-------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
                 ER+  KK       +G+  ARE G + +LECSA T+  ++  F+E +  +L
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 127
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 128 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 139
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 23/196 (11%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK 59
           M SS          K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+
Sbjct: 1   MGSSHHHHHHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGE 59
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  EI        
Sbjct: 60  PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THH 114
Query: 120 CIK---LLVGNKVD------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVN 163
           C K   LLVG ++D            K  ++ ++ +     AR+   + ++ECSA T+  
Sbjct: 115 CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKG 174
Query: 164 VEQCFEELVLKILDTP 179
           ++  F+E +L  L+ P
Sbjct: 175 LKNVFDEAILAALEPP 190

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 120
Query: 133 S-----ERVVSKK-------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
                 ER+  KK       +G+  ARE G + +LECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 72
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 130
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 139
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           S R V  K+  D AR YG  F+E SAKTR  V+  F  LV +I
Sbjct: 140 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++ +++ ++I     + D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLP 139
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  K+  + A+ YG  F+E SAKTR  VE  F  LV +I
Sbjct: 140 T-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
            +
Sbjct: 181 PV 182

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 177 DTP 179
           + P
Sbjct: 180 EPP 182

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
            +
Sbjct: 181 PV 182

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 177 DTP 179
           + P
Sbjct: 185 EPP 187

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 177 DTP 179
           + P
Sbjct: 181 EPP 183

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
           + P
Sbjct: 178 EPP 180

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +++ + G  GVGKS+L+L F   TF E   PT+   ++ + ++       L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +           I+VY +T R +   L  I+ +  ++    +    +LVGNK D+ 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
             R V   E    AR + C F+E SAK   NV++ F+EL+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 177 DTP 179
           + P
Sbjct: 181 EPP 183

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
           + P
Sbjct: 178 EPP 180

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 127
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 128 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 118
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 119 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178
Query: 177 DTP 179
           + P
Sbjct: 179 EPP 181

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 177 DTP 179
           + P
Sbjct: 185 EPP 187

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
           + P
Sbjct: 178 EPP 180

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
           + P
Sbjct: 178 EPP 180

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F E+  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
           + P
Sbjct: 178 EPP 180

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGN+ D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNRCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  P+I   ++ K V + G+   L I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 127
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 128 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVA-LGGKKMKLAIWDTAGQ 71
            K++++GD  VGK+ LLL+F+         PT+  +F   HV     ++  L +WDTAGQ
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS--HVMKYKNEEFILHLWDTAGQ 81
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD- 130
           E +  L    Y  +  +++ + V  R +F N++  W  EI  Y      +  LVG KVD 
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVDL 139
Query: 131 -KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
            K+    V+K+EG D  ++ GC+ ++E S+  ++ + + FE+ V
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGK+ L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++    E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  P+I   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 25  GKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83
           GKS L + F + TF E+  PTI  DF  K + +      L I DTAG E+F ++   Y +
Sbjct: 15  GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK 73
Query: 84  GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI 143
             QG I+VY +  + +F ++  +  + I +    +  + +LVGNKVD ESER VS  EG 
Sbjct: 74  NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVDLESEREVSSSEGR 132
Query: 144 DFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             A E+GC F+E SAK++  V++ F E+V ++
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 132 ESER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
             ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 179 P 179
           P
Sbjct: 332 P 332

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVA-LGGKKMKLAIWDTAGQ 71
            K++++GD  VGK+ LLL+F+         PT+  +F   HV     ++  L +WDTAGQ
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS--HVMKYKNEEFILHLWDTAGQ 80
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD- 130
           E +  L    Y  +  +++ + V  R +F N++  W  EI  Y      +  LVG KVD 
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVDL 138
Query: 131 -KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
            K+    V+K+EG D  ++ GC+ ++E S+  ++ + + FE+ V
Sbjct: 139 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 182

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 132 ESER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
             ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 179 P 179
           P
Sbjct: 332 P 332

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 123
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 132 ESER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
             ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 179 P 179
           P
Sbjct: 332 P 332

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F ++  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
               +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  +   F E+  PT+  ++ +  V + G++++LA+WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y  +  +++ + +   D+  N+ + W  E+  +   Q    +LVG KVD   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QGVPIILVGCKVDLRN 128
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
                    +E ++ V+ +EG   A + G   + ECSAKT   V + FE
Sbjct: 129 DPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
           +
Sbjct: 178 E 178

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 177 D 177
           +
Sbjct: 180 E 180

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
Query: 177 D 177
           +
Sbjct: 182 E 182

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 36/201 (17%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADI-------------------WAKEIDL 113
            +  L    Y    G     D+T R     +AD+                   W  E+  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 114 YSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREYGCL-FLECSAKT 160
           +  N   I  LVG K+D   ++             ++  +G+  A+E G + +LECSA T
Sbjct: 125 HCPNTPII--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 161 RVNVEQCFEELVLKILDTPSL 181
           +  ++  F+E +  +L  P +
Sbjct: 183 QRGLKTVFDEAIRAVLCPPPV 203

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
           + P
Sbjct: 178 EPP 180

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
           +
Sbjct: 178 E 178

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
Query: 177 D 177
           +
Sbjct: 178 E 178

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL + G +GVGKS L++ F +  F  E  PT+   ++     +  + + + I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED 88
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
                  + R  +G ++VYD+T R +F  +  +    +D     ++   +LVGNK D + 
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLILVGNKADLDH 146
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKT-RVNVEQCFEELVLKI 175
            R VS +EG   A E  C F ECSA T   N+ + F EL  ++
Sbjct: 147 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
Query: 177 DTP 179
           + P
Sbjct: 182 EPP 184

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F  E  PTI  D  +KH  +  +
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQ 64
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELV 172
              +LV NKVD    R V++ +G + A +Y   ++E SAK   +NV++ F +LV
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F +E  PTI   ++ KH  +  +
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQ 64
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELV 172
              +LV NKVD    R V++ +G + A +Y   ++E SAK   +NV++ F +LV
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
           +
Sbjct: 178 E 178

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  P +  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
           +
Sbjct: 178 E 178

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F ++  PTI  D  +KH  +  +
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQ 64
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELV 172
              +LV NKVD    R V++ +G + A +Y   ++E SAK   +NV++ F +LV
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++G   VGK++L   F    F E   PT+   +  K V LG  +  L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  L  S+  G  G ++VY VT   +F  +  ++ K  + +   +  + +LVGNK D   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADLSP 143
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ER V   EG   A  +G  F+E SA+     +  F +++ +I
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++    E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           D            K  ++ ++ +     AR+   + ++ECSA T+  ++  F+E +L  L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
           +
Sbjct: 178 E 178

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F  +  PTI  D  +KH  +  +
Sbjct: 1   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQ 59
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      + 
Sbjct: 60  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 118
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELV 172
              +LV NKVD    R V++ +G + A +Y   ++E SAK   +NV++ F +LV
Sbjct: 119 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V +  K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E   + +LECSA T+  ++  F+E +  +L
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V +  K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 126
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E   + +LECSA T+  ++  F+E +  +L
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V +  K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 127
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
            ++             ++  +G+  A+E   + +LECSA T+  ++  F+E +  +L
Sbjct: 128 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 26  KSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
           KS+L+L F   TF +   PTI   ++ + ++       L I DT G  +F  +       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 85  AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID 144
               I+V+ VT + +   L  I+   + +  + +D   +LVGNK D E++R V  +E   
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 145 FAREYGCLFLECSAKTRVNVEQCFEELV 172
            A+E+ C F+E SAK   NV++ F+EL+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQELL 166

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +L+GD  VGK++L++S+T++ +  E  PT   +F    V++ G+ ++L + DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK----- 128
           F  L    Y      ++ + V    +F N+++ W  EI  +      I  LVG +     
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII--LVGTQSDLRE 138
Query: 129 -------VDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVL 173
                  +DK  E+ V ++     A E     ++ECSA T+ N+++ F+  ++
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV 191

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           L++++L+GD GVGK++L   F      +L   +G D   + + + G+   L + DT   E
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 73  RFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ-DCIKL-LVGNK 128
           +     S  S  +G    ++VY +  R +F + +++    I L  T+Q D + + LVGNK
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNK 120
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169
            D    R VS +EG   A  + C F+E SA  + NV + FE
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 141
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSA 158
                       +  VS  +G + A++ G   ++ECSA
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 88
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 146
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSA 158
                       +  VS  +G + A++ G   ++ECSA
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 67
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 125
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSA 158
                       +  VS  +G + A++ G   ++ECSA
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 14  FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWDT 68
           ++++LIG+ GVGKSTL  + +   D+ +     +G D   + + + G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
            G+  +  L     +     ++VY +T R +F   +++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           NK D    R VS  EG   A  + C F+E SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           S  S +  +  ++++LIG+ GVGKSTL  + +   D+ +     +G D   + + + G+ 
Sbjct: 27  SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 61  ---MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN 117
              + L +W+  G+  +  L     +     ++VY +T R +F   +++    I L    
Sbjct: 87  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRAR 141
Query: 118 Q--DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           Q  D   +LVGNK D    R VS  EG   A  + C F+E SA  + NV++ FE +V ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++K+LL+G  GVGKS L   F        +   G  +  + + + G++  L ++D   Q+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
             R L           ++VY VT + +F   +++    + L    Q  D   +LVGNK D
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
               R VS  EG   A  + C F+E SA    NV+  FE +V +I
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query: 7   QQEFDYLFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKL 63
           Q + D +FK++L+G+SGVGKSTL  +F     D+  E  P    D   + + +  +++ L
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMVDKEEVTL 74
Query: 64  AIWDTAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
            ++D   Q +    L     +     ++V+ VT R +F+ + +   + +     + D   
Sbjct: 75  VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPV 133
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           +LVGNK D    R VS +EG   A    C  +E SA    N  + FE  V +I
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++K+LL+G  GVGKS L   F        +   G  +  + + + G++  L ++D   Q+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
             R L           ++VY VT + +F   +++    + L    Q  D   +LVGNK D
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
               R VS  EG   A  + C F+E SA    NV+  FE +V +I
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++K+LL+G  GVGKS L   F        +   G  +  + + + G++  L ++D   Q+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
             R L           ++VY VT + +F   +++    + L    Q  D   +LVGNK D
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 117
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
               R VS  EG   A  + C F+E SA    NV+  FE +V +I
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 14  FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWDT 68
           ++++LIG+ GVGKSTL  + +   D+ +     +G D   + + + G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
            G+  +  L     +     ++VY +T R +F   +++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           NK D    R VS  EG   A  + C F+E SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDR 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
            R L   Y++  QG+I V D   R+    +AD   K + L    +D + LL  NK D  +
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQDLPN 132
Query: 134 ERVVSK 139
              +S+
Sbjct: 133 AMAISE 138

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 14  FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWDT 68
           ++++LIG+ GVGKSTL  + +   D+ +     +G D   + + + G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
            G+  +  L     +     ++VY +T R +F   +++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           NK D    R VS  EG   A  +   F+E SA  + NV++ FE +V ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 16  LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           L ++G  G GKS L + F +  F  E  P +   +  +   +  + + L + DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 75  RTLTSSYYRGAQGIIMVYDV------TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           R     Y   A   ++VY V          ++  L  + AKE     T +    LL+GNK
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE-----TQRSIPALLLGNK 136
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQCFEELV 172
           +D    R V+K EG+  A  +GCLF E SA     +V+  F E V
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD   GK+ +L     D + E   PT+  ++    +    ++++L++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 145
Query: 131 ---------KESERVVSKKEGIDFAREYGC-LFLECSAKT-RVNVEQCFEELVLKILDTP 179
                     + +  +S ++G   A++ G  ++LE SA T   ++   F    +  L+ P
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
Query: 180 SLLSEGS 186
           S L + S
Sbjct: 206 SPLPQKS 212

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD   GK+ +L     D + E   PT+  ++    +    ++++L++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 128
Query: 131 ---------KESERVVSKKEGIDFAREYGC-LFLECSAKT-RVNVEQCFEELVLKILDTP 179
                     + +  +S ++G   A++ G  ++LE SA T   ++   F    +  L+ P
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
Query: 180 SLLSEGSS 187
           S L + S 
Sbjct: 189 SPLPQKSP 196

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD   GK+ +L     D + E   PT+  ++    +    ++++L++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 129
Query: 131 ---------KESERVVSKKEGIDFAREYGC-LFLECSAKT-RVNVEQCFEELVLKILDTP 179
                     + +  +S ++G   A++ G  ++LE SA T   ++   F    +  L+ P
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
Query: 180 SLLSEGS 186
           S L + S
Sbjct: 190 SPLPQKS 196

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           D +FK++L+G+SGVGKSTL  +F     D   E+  +   D   + + +  +++ L ++D
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENS--EDTYERRIMVDKEEVTLIVYD 67
Query: 68  TAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
              Q +    L     +     ++V+ VT R +F+ + +   + +     + D   +LVG
Sbjct: 68  IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVG 126
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           NK D    R VS +EG   A    C  +E SA    N  + FE  V +I
Sbjct: 127 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG  F ++ V    K +   +WD  GQ+R
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 56
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 57  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 130 D 130
           D
Sbjct: 112 D 112

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG  F ++ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD----CIKLLVGNKV 129
            R+L   YYR  +G+I V D   R          A+E+     N+D     + L+  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 130 D 130
           D
Sbjct: 129 D 129

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG  F ++ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 128
Query: 130 D 130
           D
Sbjct: 129 D 129

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 378
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 434

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           +FK++L+G+SGVGKSTL  +F     D   E+  +   D   + + +  +++ L ++D  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--EDTYERRIMVDKEEVTLIVYDIW 59
Query: 70  GQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
            Q +    L     +     ++V+ VT R +F+ + +   + +     + D   +LVGNK
Sbjct: 60  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNK 118
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            D    R VS +EG   A    C  +E SA    N  + FE  V +I
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +LL++G    GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  GQ+ 
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 72
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
           R+   +Y+    G+I V D   R
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADR 96

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +LL++G    GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
           R+   +Y+    G+I V D   R
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADR 98

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +LL++G    GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
           R+   +Y+    G+I V D   R
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADR 98

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 68
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 124

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 69
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 1  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   YY G QG+I V D   RD
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRD 81

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           D   ++LL+G    GK+TLL    S+    ++PT G  F IK V   G   KL +WD  G
Sbjct: 15  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGG 70
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
           Q + R    SY+     +I V D   R  F
Sbjct: 71  QRKIRPYWRSYFENTDILIYVIDSADRKRF 100

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           D   ++LL+G    GK+TLL    S+    ++PT G  F IK V   G   KL +WD  G
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGG 69
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
           Q + R    SY+     +I V D   R  F
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRF 99

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
          + +LL++G    GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  G +
Sbjct: 1  MLRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGLK 56
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRR 97
            R+   +Y+    G+I V D   R
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADR 81

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G  F ++ V  G   +K  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR++   Y RG   I+ + D   R+      +     +D     Q    L++GNK D  
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL-QGIPVLVLGNKRDLP 137
Query: 133 S---ERVVSKKEGIDFA--REYGCLFLECSAKTRVNV 164
           +   E+ + +K  +     RE  C  + C  K  +++
Sbjct: 138 NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDI 174

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L +G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++ 
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 57
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 58  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN-DREXRDAIILIFANKQD 112

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++LL+G    GK+TLL    S+    ++PT G  F IK V   G   KL +WD  GQ + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKI 61
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF 100
           R    SY+     +I V D   R  F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDK 85
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
            R L   Y++  QG+I V D   R+     AD   K +      +D + L+  NK D  +
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPN 144
Query: 134 ERVVSK 139
              VS+
Sbjct: 145 AMPVSE 150

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 76
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   Y++  QG+I V D   RD      D   + ++     +D + L+  NK D
Sbjct: 77  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQD 132

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+++L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD----CIKLLVGNKV 129
            R L   YY+  Q II V D   RD         A+E  +   N+D     I L+  NK 
Sbjct: 74  IRPLWRHYYQNTQAIIFVVDSNDRDRIGE-----AREELMKMLNEDEMRNAILLVFANKH 128
Query: 130 D 130
           D
Sbjct: 129 D 129

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG + +     L  K +KL +WD  GQ  
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 74
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVD 130
            R     YY     +I V D T +D  +      +KE+ L       QD   L+  NK D
Sbjct: 75  IRPYWRCYYADTAAVIFVVDSTDKDRMSTA----SKELHLMLQEEELQDAALLVFANKQD 130
Query: 131 K 131
           +
Sbjct: 131 Q 131

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  G ++
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 69
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  G ++
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 58
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 59  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 114

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  G ++
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 59
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 60  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 115

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAI 65
           S QE     K++++G    GK+T+L  F+ +     SPTIG +  ++ + +   +    +
Sbjct: 19  SHQEH----KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLM 70
Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 98
           WD  GQE  R+  ++YY   + +I+V D T R+
Sbjct: 71  WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          K++++G    GK+T+L  F+ +     SPTIG +  ++ + +   +    +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLMWDIGGQESL 73
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R+  ++YY   + +I+V D T R+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          K++++G    GK+T+L  F+ +     SPTIG +  ++ + +   +    +WD  GQE  
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLMWDIGGQESL 73
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R+  ++YY   + +I+V D T R+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G  F ++ +  G   +KL  WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
           RFR++   Y RG   I+ + D   ++      +     +D     Q    L++GNK D  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL-QGIPVLVLGNKRDLP 137
Query: 131 ---KESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
               E E +          RE  C  + C  K  +++
Sbjct: 138 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++++G    GK+T+L  F+ +     SPTIG +  ++ + +     +  +WD  GQE  
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVI--NNTRFLMWDIGGQESL 78
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRD 98
           R+  ++YY   + +I+V D T R+
Sbjct: 79  RSSWNTYYTNTEFVIVVVDSTDRE 102

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 221
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRD 98
            R L   Y++  QG+I V D   R+
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G  F ++ +  G   +KL  WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 73  RFRTLTSSYYRGAQGIIMVYDV-------TRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           RFR++   Y RG   I+ + D          ++   NL D            Q    L++
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD--------KPQLQGIPVLVL 139
Query: 126 GNKVD-----KESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
           GNK D      E E +          RE  C  + C  K  +++
Sbjct: 140 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 183

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   Y++  QG+I V D   R+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 14/160 (8%)
Query: 10  FDYLF-----KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLA 64
           F+ LF     ++L++G    GK+T+L            PTIG  F ++ V    + +   
Sbjct: 9   FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIG--FNVETVEF--RNISFT 64
Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           +WD  GQ++ R L   YY    G+I V D   R+   +  +   + I+     +D I L+
Sbjct: 65  VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEEL-KDAIILV 123
Query: 125 VGNKVD---KESERVVSKKEGIDFAREYGCLFLECSAKTR 161
             NK D     S   V++K  ++  RE    F++ +  TR
Sbjct: 124 FANKQDLPNAMSAAEVTEKLHLNTIRERNW-FIQSTCATR 162

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 24 VGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83
           GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  GQ+  R+   +Y+ 
Sbjct: 29 AGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 84 GAQGIIMVYDVTRR 97
             G+I V D   R
Sbjct: 85 STDGLIWVVDSADR 98

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 72
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   Y++  QG+I V D   R+
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRE 97

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++++G    GK+T+L  F  +     SPTIG +  ++ + +  K     +WD  GQE  
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSN--VEEIVV--KNTHFLMWDIGGQESL 73
Query: 75  RTLTSSYYRGAQGIIMVYD--------VTRRDTFTNLA--DIWAKEIDLYSTNQD 119
           R+  ++YY   + II+V D        +T+ + +  LA  D+    + +++  QD
Sbjct: 74  RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQD 128

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   Y++  QG+I V D   R+
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRE 98

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G  G GK+T+L            PTIG + +          +   +WD  GQ+R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYC----NISFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
           R+L   YY   +G+I V D   R
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDSNDR 97

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++LL+G    GK+TLL    S+    ++PT G  F IK V   G   KL +WD  G  + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRKI 61
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF 100
           R    SY+     +I V D   R  F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL---SPTIGVDFKIKHVALGGKKMK---LAIWDT 68
           KL ++G++G GK+TLL         +L   S T+G+D K   + +  K+ +   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AG+E F +    +       + VYD+++     +    W   I   +++   I  LVG  
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 119
Query: 129 VDKESER 135
           +D   E+
Sbjct: 120 LDVSDEK 126

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL---SPTIGVDFKIKHVALGGKKMK---LAIWDT 68
           KL ++G++G GK+TLL         +L   S T+G+D K   + +  K+ +   L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AG+E F +    +       + VYD+++     +    W   I   +++   I  LVG  
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 121
Query: 129 VDKESER 135
           +D   E+
Sbjct: 122 LDVSDEK 128

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  G ++
Sbjct: 3  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGLDK 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   Y++  QG+I V D   R+
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRE 83

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  GQ  
Sbjct: 3  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R     YY     +I V D   RD
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDT---FEELSPTIGVDFKIKHVALGGK--KMKLAIWDTA 69
           K+ ++G++ VGKS L+  FTS      ++ + T GV+  +  V +      ++L + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD--CIKLLVGN 127
           G + ++   S Y+ G    I+V+DV+  ++F +    W + +     +++     +LV N
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFES-CKAWFELLKSARPDRERPLRAVLVAN 140
Query: 128 KVDKESERVVSKKEGIDFAREYG 150
           K D   +R    +  +D A+++ 
Sbjct: 141 KTDLPPQR---HQVRLDMAQDWA 160

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 25/127 (19%)
Query: 16  LLLIGDSGVGKSTLL--LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +L +G    GK+T++  L  ++   + + PTIG  F I+        +   ++D +GQ R
Sbjct: 24  VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIE--KFKSSSLSFTVFDMSGQGR 79
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKL 123
           +R L   YY+  Q II V D + R          DT  N  DI  + I +         L
Sbjct: 80  YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPI---------L 130
Query: 124 LVGNKVD 130
              NK+D
Sbjct: 131 FFANKMD 137

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  G   
Sbjct: 5  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 60
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R     YY     +I V D   RD
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  G    
Sbjct: 9  RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTSI 64
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R     YY     +I V D   RD
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRD 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-102
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-99
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-99
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	5e-99
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-98
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-98
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-98
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	5e-98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	8e-97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	5e-96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	9e-95
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	3e-94
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-93
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	5e-93
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	7e-92
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	6e-91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-90
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-89
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-89
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-88
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	4e-88
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	8e-87
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-85
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-82
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-81
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-80
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	8e-79
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	9e-79
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-77
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-76
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-76
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-75
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-75
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-75
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-75
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	7e-74
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	7e-74
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-72
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-72
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-72
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-72
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-71
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-71
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	6e-69
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-67
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	6e-67
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-64
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	8e-62
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-61
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-61
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-55
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-55
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-49
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	7e-49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-48
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	4e-46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-45
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-44
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-44
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-44
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-43
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-42
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-42
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-41
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-31
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-30
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-23
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	5e-19
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-18
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-18
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	3e-18
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	4e-18
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-18
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-17
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-17
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	7e-17
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-16
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	4e-16
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-15
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-15
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	6e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	6e-10
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	4e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	2e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	5e-04

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  292 bits (750), Expect = e-102
 Identities = 107/188 (56%), Positives = 134/188 (71%), Gaps = 3/188 (1%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
            SS   ++     K+L+IG+SGVGKS+LLL FT DTF  EL+ TIGVDFK+K +++ G K
Sbjct: 4   GSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
            KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L + W  E++ Y T  D 
Sbjct: 64  AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDI 122

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           + +LVGNK+DKE  R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP 
Sbjct: 123 VNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 181

Query: 181 LLSEGSSG 188
           L    +  
Sbjct: 182 LWESENQN 189

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  285 bits (732), Expect = 3e-99
 Identities = 101/205 (49%), Positives = 128/205 (62%), Gaps = 5/205 (2%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
            E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +   W +EID Y+     +KLLVG
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVG 120

Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGS 186
           NK D + +RVV      +FA      FLE SA    NVE  F  +  +I ++ S  +   
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180

Query: 187 SGVKKNIFKESPPQNDASTT--GCC 209
           +  KK        +  + T   GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  285 bits (731), Expect = 3e-99
 Identities = 84/204 (41%), Positives = 120/204 (58%), Gaps = 11/204 (5%)

Query: 7   QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
              FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL I
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           WDTAG ER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS   +   LLV
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLV 119

Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEG 185
           GNK D E ERVVS + G   A   G  F E SAK  +NV+Q FE LV  I +  S   + 
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179

Query: 186 SS--------GVKKNIFKESPPQN 201
           +         G +    +  P Q+
Sbjct: 180 ADPAVTGAKQGPQLTDQQAPPHQD 203

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  284 bits (729), Expect = 5e-99
 Identities = 85/179 (47%), Positives = 115/179 (64%), Gaps = 3/179 (1%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
           +   Q  FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++
Sbjct: 13  NLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 72

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS   +  
Sbjct: 73  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYS-WDNAQ 130

Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
            +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V Q FE LV  I D  S
Sbjct: 131 VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  282 bits (725), Expect = 1e-98
 Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 3/177 (1%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           + S+T+   + Y+FK ++IGD GVGKS LL  FT   F  +   TIGV+F  + + + G+
Sbjct: 3   LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+  W  +    + N +
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLT-NPN 120

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            + +L+GNK D E++R V+ +E   FA E G LFLE SAKT  NVE  F E   KI 
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  283 bits (727), Expect = 1e-98
 Identities = 101/191 (52%), Positives = 126/191 (65%), Gaps = 3/191 (1%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  K
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNK 124

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182
           LLVGNK D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I       
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184

Query: 183 SEGSSGVKKNI 193
           +      K N+
Sbjct: 185 ATAGGAEKSNV 195

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  282 bits (725), Expect = 2e-98
 Identities = 78/175 (44%), Positives = 109/175 (62%), Gaps = 3/175 (1%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKK 60
           A  T   E+DYLFK++LIGDSGVGKS LL  FT + F   S  TIGV+F  + + + GK 
Sbjct: 18  AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +K  IWDTAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+   W KE+  ++ + + 
Sbjct: 78  IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNI 135

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + +LVGNK D    R V   E   FA + G  F+E SA    NVE  F+ ++ +I
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  281 bits (722), Expect = 5e-98
 Identities = 81/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
           +S    +  DY+FKLLLIG+S VGK++ L  +  D+F      T+G+DFK+K V    K+
Sbjct: 11  SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS   + 
Sbjct: 71  IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNA 128

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
             +LVGNK D E ERVV  ++G   A + G  F E SAK  +NV+Q FE LV  I +
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  281 bits (720), Expect = 1e-97
 Identities = 99/175 (56%), Positives = 122/175 (69%), Gaps = 3/175 (1%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 24  SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  K
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNK 141

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           LLVGNK D  +++VV      +FA   G  FLE SAK   NVEQ F  +  +I  
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  280 bits (718), Expect = 1e-97
 Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 4/175 (2%)

Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKL 63
           +  +++D+LFKLL+IGDSGVGKS+LLL F  +TF      TIGVDFKI+ V + G+K+KL
Sbjct: 1   SMARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL 60

Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
            IWDTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI+    +    ++
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEINQNCDD--VCRI 117

Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
           LVGNK D    +VV  ++   FA + G    E SAK  VNVE+ F  +   +L  
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  280 bits (718), Expect = 1e-97
 Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 4/175 (2%)

Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMK 62
           +    +D  FK++L+GDSGVGK+ LL+ F    F   +   T+G+DF+ K + + G K+K
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 61

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L +WDTAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVAL 119

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           +L+GNKVD   ERVV +++G   A+EYG  F+E SAKT +NV+  F  +  ++  
Sbjct: 120 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  280 bits (719), Expect = 2e-97
 Identities = 86/179 (48%), Positives = 125/179 (69%), Gaps = 4/179 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           +    S +  D+  ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GK
Sbjct: 14  LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK 73

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K++L IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SED 131

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKILD 177
              LLVGNK+D E++R +++++G  FA++  G  F E SAK   NV++ F +LV  IL 
Sbjct: 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  280 bits (719), Expect = 2e-97
 Identities = 77/178 (43%), Positives = 115/178 (64%), Gaps = 3/178 (1%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           +    S +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+
Sbjct: 14  LVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE 73

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K+KL IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y+ +  
Sbjct: 74  KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYA-SNK 131

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
            I +LVGNK+D    R VS++   +F+      +LE SAK   NVE+ F +L  +++ 
Sbjct: 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  280 bits (717), Expect = 8e-97
 Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 18/225 (8%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK 59
           M+S     ++D LFK++LIGDSGVGKS LL  FT + F   S  TIGV+F  + + + GK
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           ++K  IWDTAGQER+R +TS+YYRGA G ++VYD+++  ++ N    W  E+   + + +
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSELRENA-DDN 118

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
               L+GNK D    R V  +E   FA+E   LF E SA    NV++ FEEL+  I    
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178

Query: 180 S---------------LLSEGSSGVKKNIFKESPPQNDASTTGCC 209
           S                 +   +G   ++         A+   CC
Sbjct: 179 SKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  278 bits (713), Expect = 1e-96
 Identities = 63/179 (35%), Positives = 93/179 (51%), Gaps = 6/179 (3%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
           S   +     +FK+++IGDS VGK+ L   F +  F +    TIGVDF+ + V + G+++
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 62  KLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           K+ +WDTAGQERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D 
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDI 128

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR---VNVEQCFEELVLKIL 176
            ++LVGNK D  S   V       FA  +     E SAK      +VE  F  L  K+ 
Sbjct: 129 PRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  278 bits (714), Expect = 2e-96
 Identities = 96/212 (45%), Positives = 126/212 (59%), Gaps = 7/212 (3%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
            ASS + + +D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GK
Sbjct: 8   SASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK 67

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +
Sbjct: 68  KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDE 125

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
              LLVGNK D E  RVV+  +G   A+E G  F+E SAK   NV + F  L   I +  
Sbjct: 126 AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK- 183

Query: 180 SLLSEGSSGVKKNIFKESPPQNDASTTGCCSS 211
             +         N  + +   N  S     S+
Sbjct: 184 --IDSNKLVGVGNGKEGNISINSGSGNSSKSN 213

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  277 bits (711), Expect = 2e-96
 Identities = 86/176 (48%), Positives = 118/176 (67%), Gaps = 3/176 (1%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKM 61
           SS       YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V + GK++
Sbjct: 11  SSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI 70

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           KL IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L   W ++   +S + + +
Sbjct: 71  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHS-SSNMV 128

Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
            +L+GNK D ES R V ++EG  FARE+G +F+E SAKT  NVE+ F     +I  
Sbjct: 129 IMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  277 bits (710), Expect = 3e-96
 Identities = 85/182 (46%), Positives = 120/182 (65%), Gaps = 3/182 (1%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
           + +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++G
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILG 120

Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGS 186
           NK D   +R VSK+ G   A +YG  F+E SAK  +NVE  F  L   I        + +
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180

Query: 187 SG 188
           + 
Sbjct: 181 AA 182

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  276 bits (709), Expect = 5e-96
 Identities = 73/175 (41%), Positives = 106/175 (60%), Gaps = 3/175 (1%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMK 62
               ++++++FK++LIG+SGVGK+ LL  FT + F   S  TIGV+F  + V LG   +K
Sbjct: 16  PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 75

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
             IWDTAG ER+R +TS+YYRGA G ++V+D+T+  T+  +   W KE+  ++     + 
Sbjct: 76  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-WLKELYDHA-EATIVV 133

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           +LVGNK D    R V  +E   FA   G LFLE SA    NVE  FE ++ +I  
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  276 bits (709), Expect = 5e-96
 Identities = 63/185 (34%), Positives = 108/185 (58%), Gaps = 12/185 (6%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVAL------ 56
           S S  ++DYL K L +GDSGVGK+++L  +T   F      T+G+DF+ K V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 57  ----GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID 112
                G+++ L +WDTAG ERFR+LT++++R A G ++++D+T   +F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120

Query: 113 LYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           +++ +++   +L GNK D E +R V ++E  + A +YG  + E SA    N+    E L+
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 173 LKILD 177
             I+ 
Sbjct: 181 DLIMK 185

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  275 bits (707), Expect = 1e-95
 Identities = 79/174 (45%), Positives = 115/174 (66%), Gaps = 3/174 (1%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K + +GGK +KL IW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L + W  +  + + +Q+ + +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCG 122

Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           NK D +++R V+  E   FA+E   +FLE SA T  NVE+ F +   KIL+   
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  276 bits (707), Expect = 1e-95
 Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 4/181 (2%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
            S    +++D+LFKL+L+GD+ VGK+ ++  F +  F E    TIGVDF +K + + GK+
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQERFRT+T SYYR A G I+ YD+T+R +F ++   W +++  Y+   + 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
           ++LL+GNK D    R VS  E    A  Y  L  +E SAK   NVE+ F  +  +++   
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195

Query: 180 S 180
            
Sbjct: 196 G 196

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  275 bits (706), Expect = 2e-95
 Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 3/175 (1%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMK 62
                  D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +K
Sbjct: 16  PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK 75

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +LA  W  +    + + + + 
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVV 133

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           +L GNK D + ER V+  E   FA+E   +FLE SA T  NVE+ F +    IL+
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  274 bits (703), Expect = 9e-95
 Identities = 65/187 (34%), Positives = 110/187 (58%), Gaps = 12/187 (6%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK- 59
                  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V    + 
Sbjct: 14  LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQG 73

Query: 60  ---------KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKE 110
                    K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W  +
Sbjct: 74  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQ 132

Query: 111 IDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170
           +   +  ++   +L+GNK D   +R V++++  + A +YG  + E SA T  NVE+  E 
Sbjct: 133 LQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192

Query: 171 LVLKILD 177
           L+  I+ 
Sbjct: 193 LLDLIMK 199

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  272 bits (698), Expect = 3e-94
 Identities = 80/200 (40%), Positives = 114/200 (57%), Gaps = 9/200 (4%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFK++LIGDSGVGKS LL  FT + F   S  TIGV+F  + + + GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+   W KE+  ++ + + + +LVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNK 119

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL------L 182
            D    R V   E   FA +    F+E SA    NVE+ F+ ++ +I    S        
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRA 179

Query: 183 SEGSSGVKKNIFKESPPQND 202
           +   S     +    PP  D
Sbjct: 180 AHDESPGNNVVDISVPPTTD 199

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  270 bits (693), Expect = 2e-93
 Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 4/210 (1%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK 59
           M++          FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  +
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            ++L +WDTAG ERFR+L  SY R +   ++VYD+T  ++F      W  ++       D
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRTER-GSD 121

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
            I +LVGNK D   +R VS +EG   A+E   +F+E SAK   NV+Q F  +   +    
Sbjct: 122 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 180 SLLSEGSSGVKKNIFKESPPQNDASTTGCC 209
           S   + S     +I  E P +   S  GC 
Sbjct: 182 S-TQDRSREDMIDIKLEKPQEQPVSEGGCL 210

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  269 bits (689), Expect = 3e-93
 Identities = 89/168 (52%), Positives = 112/168 (66%), Gaps = 4/168 (2%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           D E  RVV+  +G   A+E G  F+E SAK   NV + F  L   I +
Sbjct: 119 DME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  268 bits (687), Expect = 5e-93
 Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 3/170 (1%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDT 68
             Y FK++L+G+  VGK++L+L +  + F +    T+G  F  K + +GGK++ LAIWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERF  L   YYR + G I+VYD+T  D+F  + + W KE+       +    +VGNK
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNK 120

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
           +D E ER VS +E   +A   G      SAK    +E+ F +L  ++++T
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  265 bits (680), Expect = 7e-92
 Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           +   K++++G+  VGKS+++  +    F ++   TIGVDF  + + +  + ++L +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQE F  +T +YYRGAQ  ++V+  T R++F  ++  W +++     +      LV NK+
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKVVAEVGD--IPTALVQNKI 119

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           D   +  +  +E    A+     F   S K  +NV + F+ L  K L 
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  266 bits (682), Expect = 2e-91
 Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 4/187 (2%)

Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGV-DFKIKHVALGGKKMKL 63
           S +  +  +K+ LIGD GVGK+T +       FE+    T+G  +  +  +   G  +K 
Sbjct: 4   SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63

Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
            +WDTAGQE+   L   YY GA G I+ +DVT R T  NLA  W KE      N +   +
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGN-EAPIV 121

Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLS 183
           +  NK+D ++ + +SKK  ++  +     + E SAKT  N    F  L       P L+ 
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIF 181

Query: 184 EGSSGVK 190
             +  ++
Sbjct: 182 VSNVNLE 188

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  264 bits (677), Expect = 2e-91
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 5/175 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK-KMKLAIWD 67
                K++++GD   GK++L   F  +TF +    TIG+DF ++ + L G   + L IWD
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLV 125
             GQ     +   Y  GAQG+++VYD+T   +F NL D W   +   S       +  LV
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALV 121

Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           GNK+D E  R +  ++ + F +E G      SAKT  +V  CF+++  +IL    
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  264 bits (676), Expect = 6e-91
 Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 9/184 (4%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
              S         +K++L GD+ VGKS+ L+    + F E +S T+GVDF++K + + G+
Sbjct: 16  PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGE 75

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           +  L +WDTAGQERFR++  SY+R A G++++YDVT   +F N+ + W   I+  + ++ 
Sbjct: 76  RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HET 133

Query: 120 CIKLLVGNKVD------KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL 173
              +LVGNK D       E ++ V    G   A  YG LF E SAK   N+ +    L  
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193

Query: 174 KILD 177
           ++  
Sbjct: 194 EVKK 197

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  260 bits (667), Expect = 9e-90
 Identities = 66/180 (36%), Positives = 96/180 (53%), Gaps = 3/180 (1%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKK 60
            S  +        KL+L+GD G GKS+L+L F  D F E    TIG  F  + +A+    
Sbjct: 1   GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +K  IWDTAGQER+ +L   YYRGA   I+V+DVT + +F      W +E+     N + 
Sbjct: 61  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-WVQELQAQG-NPNM 118

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           +  L GNK D    R V+ ++   +A+E G  F+E SAKT  NV++ F E+  ++     
Sbjct: 119 VMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  260 bits (666), Expect = 1e-89
 Identities = 67/174 (38%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
             LFK++L+GD GVGKS+L+  + ++ F  +L  TIGV+F  K + + G  + + IWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC---IKLLVG 126
           GQERFR+L + +YRG+   ++ + V    +F NL   W KE   Y+  ++      +++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILG 123

Query: 127 NKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
           NK+D   ER VS +E   + R+ G   + E SAK   NV   FEE V ++L T 
Sbjct: 124 NKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  260 bits (666), Expect = 5e-89
 Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 7/182 (3%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK 59
           MAS+ +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+           
Sbjct: 4   MASA-AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +++     N  
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCEN-- 119

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
              +L GNKVD +  +V +  + I F R+    + + SAK+  N E+ F  L  K++  P
Sbjct: 120 IPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

Query: 180 SL 181
           +L
Sbjct: 178 NL 179

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  257 bits (659), Expect = 4e-88
 Identities = 65/214 (30%), Positives = 109/214 (50%), Gaps = 12/214 (5%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK 59
           M S         L K++++GDSGVGK++L+  + +  F      TIG DF  K V +  +
Sbjct: 1   MTS-----RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR 55

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            + + IWDTAGQERF++L  ++YRGA   ++V+DVT  +TF  L   W  E  + ++ +D
Sbjct: 56  LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRD 114

Query: 120 C---IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
                 +++GNK+D E+ +V +K+       +    + E SAK  +NVEQ F+ +    L
Sbjct: 115 PENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

Query: 177 DTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS 210
              + +   +        K    +   ++   CS
Sbjct: 175 KQETEVELYNE--FPEPIKLDKNERAKASAESCS 206

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  255 bits (655), Expect = 4e-88
 Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 3/166 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D+F+    PTIG  F  K V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHG-PPSIVVAIAGNKCDLT 124

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
             R V +++  D+A     +F+E SAK  +N+ + F E+  +I  T
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  253 bits (648), Expect = 8e-87
 Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 3/180 (1%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKK 60
           +    +       K+ L+GD+GVGKS+++  F  D F+    PTIG  F  K V  G + 
Sbjct: 12  SGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNEL 71

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
            K  IWDTAGQERF +L   YYRG+   ++VYD+T++D+F  L   W KE+  +   ++ 
Sbjct: 72  HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENI 129

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
           +  + GNK D    R V  K+  ++A   G + +E SAK  +N+E+ F+ +  +I     
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  252 bits (646), Expect = 1e-86
 Identities = 65/174 (37%), Positives = 98/174 (56%), Gaps = 3/174 (1%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKM 61
           SS         FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + +
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           +L +WDTAGQERFR+L  SY R +   ++VYD+T  ++F   +  W  ++       D I
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRTER-GSDVI 121

Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +LVGNK D   +R VS +EG   A+E   +F+E SAK   NV+Q F  +   +
Sbjct: 122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  249 bits (639), Expect = 1e-85
 Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
             FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QER+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   + + + +  L GNK D
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKAD 122

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
             ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+ 
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  245 bits (627), Expect = 1e-83
 Identities = 62/178 (34%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKM-KLAI 65
                + K++++GDSGVGK++L+  + +D + +    TIG DF  K V + G K+  + +
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS---TNQDCIK 122
           WDTAGQERF++L  ++YRGA   ++VYDVT   +F N+   W  E  +++   + +    
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPF 121

Query: 123 LLVGNKVD-KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
           +++GNK+D +ES+++VS+K   + A+  G +     SAK  +NV+  FEE+    L  
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  242 bits (619), Expect = 3e-82
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 3/175 (1%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKM 61
           +   Q + D +FK++L+G+SGVGKSTL  +F     +    P    D   + + +  +++
Sbjct: 13  NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV 72

Query: 62  KLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
            L ++D   Q      L     +     ++V+ VT R +F+ + +     +     + D 
Sbjct: 73  TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDL 131

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             +LVGNK D    R VS +EG   A    C  +E SA    N  + FE  V +I
Sbjct: 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  240 bits (614), Expect = 2e-81
 Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 10/184 (5%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFT--SDTFEELS-PTIGVDFKIKHVALGGK 59
                       K+ ++G++ VGKS L+  FT     F +    T GV+  +  V +   
Sbjct: 10  VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT 69

Query: 60  KMKLAIW--DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-- 115
            + + ++  DTAG + ++   S Y+ G    I+V+DV+  ++F +    W + +      
Sbjct: 70  TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSARPD 128

Query: 116 TNQDCIKLLVGNKVDKESER-VVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELVL 173
             +    +LV NK D   +R  V      D+A      F + SA     + +  F  +  
Sbjct: 129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188

Query: 174 KILD 177
               
Sbjct: 189 TFYR 192

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  236 bits (605), Expect = 5e-80
 Identities = 68/211 (32%), Positives = 114/211 (54%), Gaps = 9/211 (4%)

Query: 1   MASSTSQ-QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG 58
           MA++  + Q    L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 59

Query: 59  KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118
           +++++ I DTAGQE +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     ++
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDE 118

Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
           +   LLVGNK D E +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I   
Sbjct: 119 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA- 177

Query: 179 PSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209
                +     +KN  K+           CC
Sbjct: 178 ----RKMEDSKEKNGKKKRKSLAKRIRERCC 204

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  232 bits (595), Expect = 8e-79
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 3/168 (1%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
                 KL+++G  GVGKS L + F    F  +  PTI  D   K  ++ G   +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQE F  +   Y R   G ++V+ +  R +F  +  ++  +I       D   +LVGN
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLF-TQILRVKDRDDFPVVLVGN 122

Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K D ES+R V + E   F   +   + E SAK R+NV++ FE+LV  +
Sbjct: 123 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  232 bits (595), Expect = 9e-79
 Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 3/175 (1%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
                 Q    L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G++
Sbjct: 7   GGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEE 65

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +++ I DTAGQE +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++ 
Sbjct: 66  VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENV 124

Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             LLVGNK D E +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I
Sbjct: 125 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  227 bits (582), Expect = 5e-77
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FK++L+G+SGVGKSTL  +F     +         D   + + +  +++ L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 72  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
                 L     +     ++V+ VT R +F+ + +     +     + D   +LVGNK D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSD 120

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
               R VS +EG   A    C  +E SA    N  + FE  V +I
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  228 bits (582), Expect = 1e-76
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 43/208 (20%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKK------- 60
           E    +K +L+G+S VGKS+++L  T DTF E +  TIG  F    V L           
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 61  ------------------------------MKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90
                                         +K  IWDTAGQER+ ++   YYRGA   I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 91  VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG 150
           V+D++  +T       W  ++     + + I +LV NK+DK  +  V   E   +A++  
Sbjct: 123 VFDISNSNTLDRAKT-WVNQLK---ISSNYIIILVANKIDKN-KFQVDILEVQKYAQDNN 177

Query: 151 CLFLECSAKTRVNVEQCFEELVLKILDT 178
            LF++ SAKT  N++  F  L  +I   
Sbjct: 178 LLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  227 bits (580), Expect = 2e-76
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 4/177 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F ++  PTI  D  +KH  +  +
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQ 64

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++     + I      + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFH-QLILRVKDRES 123

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT-RVNVEQCFEELVLKI 175
              +LV NKVD    R V++ +G + A +Y   ++E SAK   +NV++ F +LV  I
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  224 bits (574), Expect = 1e-75
 Identities = 58/177 (32%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
              K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAG 63

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           Q+ +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSS 187
              ERV+S +EG   A  +   FLE SAK        F  ++L+        S+G S
Sbjct: 123 LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  224 bits (574), Expect = 2e-75
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 10/206 (4%)

Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLA 64
           S  E    +++++ G  GVGKS+L+L F   TF +   PTI   ++ + ++       L 
Sbjct: 1   SMPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQ 59

Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           I DT G  +F  +           I+V+ VT + +   L  I+   + +  + +D   +L
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML 119

Query: 125 VGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSE 184
           VGNK D E++R V  +E    A+E+ C F+E SAK   NV++ F+EL+         L+ 
Sbjct: 120 VGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNI 178

Query: 185 GSSGVKKNIFKESPPQNDASTTGCCS 210
                     +    +      G C+
Sbjct: 179 DGK-------RSGKQKRTDRVKGKCT 197

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  223 bits (570), Expect = 4e-75
 Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 121

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           E +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  222 bits (568), Expect = 6e-75
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++K+LL+G  GVGKS L   F        +   G  +  + + + G++  L ++D   Q+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
             R L           ++VY VT + +F   ++    ++       D   +LVGNK D  
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             R VS  EG   A  + C F+E SA    NV+  FE +V +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  219 bits (561), Expect = 7e-74
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++++G  GVGKS L + F + TF E+  PTI  DF  K + +      L I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F ++   Y +  QG I+VY +  + +F ++  +   +I      +    +LVGNKVD E
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR-DQIIRVKRYEKVPVILVGNKVDLE 121

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           SER VS  EG   A E+GC F+E SAK++  V++ F E+V ++
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  219 bits (561), Expect = 7e-74
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLA 121

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  217 bits (555), Expect = 1e-72
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLP 139

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             R V  K+  + A+ YG  F+E SAKTR  VE  F  LV +I
Sbjct: 140 -TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  216 bits (553), Expect = 2e-72
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 2/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +++ + G  GVGKS+L+L F   TF E   PT+   ++ + ++       L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +           I+VY +T R +   L  I+ +  ++    +    +LVGNK D+ 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             R V   E    AR + C F+E SAK   NV++ F+EL+   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  217 bits (554), Expect = 3e-72
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
                       K++++G   VGK++L   F    F E   PT+   +  K V LG  + 
Sbjct: 14  LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEF 72

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
            L + DTAGQ+ +  L  S+  G  G ++VY VT   +F  +     +++          
Sbjct: 73  HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVP 131

Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +LVGNK D   ER V   EG   A  +G  F+E SA+     +  F +++ +I
Sbjct: 132 VVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  216 bits (552), Expect = 4e-72
 Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 4/179 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +   Y R  +G + V+ +    +F ++     ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYR-EQIKRVKDSEDVPMVLVGNKCDLP 122

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKK 191
             R V  K+  D AR YG  F+E SAKTR  V+  F  LV +I      +S+     KK
Sbjct: 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKK 180

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  213 bits (544), Expect = 4e-71
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 3/165 (1%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           L++++L+GD GVGK++L   F      +L   +G D   + + + G+   L + DT   E
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63

Query: 73  RFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +     S  S  +G    ++VY +  R +F + +++   ++           +LVGNK D
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELR-IQLRRTHQADHVPIILVGNKAD 122

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
               R VS +EG   A  + C F+E SA  + NV + FE +V ++
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  211 bits (541), Expect = 8e-71
 Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  +   Y +  QG  +VY +T + TF +L D   ++I      +D   +LVGNK D E
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 121

Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
            ERVV K++G + AR++  C FLE SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  208 bits (532), Expect = 6e-69
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF---EELSPTIGVDFKIKHVALGGK 59
           S  S +  +  ++++LIG+ GVGKSTL   F         +       D   + + + G+
Sbjct: 27  SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGE 85

Query: 60  K---MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST 116
               + L +W+  G+  +  L     +     ++VY +T R +F   ++    ++     
Sbjct: 86  SATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQ 142

Query: 117 NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +D   +LVGNK D    R VS  EG   A  + C F+E SA  + NV++ FE +V ++
Sbjct: 143 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  203 bits (518), Expect = 2e-67
 Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 6/168 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            KL+L+G++ VGKS+++L F S+ F E   PTIG  F  + V +    +K  IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
           RF +L   YYR AQ  ++VYDVT+  +F      W KE+   + ++D I  LVGNK+D  
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXL 121

Query: 131 -KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
            +  ER V+++EG   A E G LF E SAKT  NV   F  +  KI  
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  203 bits (518), Expect = 6e-67
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
                      KL + G +GVGKS L++ F +  F  E  PT+   ++     +  + + 
Sbjct: 19  YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVS 77

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           + I DTAGQE        + R  +G ++VYD+T R +F  +       +D     ++   
Sbjct: 78  MEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTL 135

Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT-RVNVEQCFEELVLKI 175
           +LVGNK D +  R VS +EG   A E  C F ECSA T   N+ + F EL  ++
Sbjct: 136 ILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  198 bits (506), Expect = 3e-65
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
           +   Q   +    L ++G  G GKS L + F +  F  E  P +   +      +  + +
Sbjct: 13  NLYFQGPLEV--NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPV 69

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY--STNQD 119
            L + DTA  +  R     Y   A   ++VY V  R +F + +    + + L+   T + 
Sbjct: 70  HLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYL-ELLALHAKETQRS 127

Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQCFEELVLKI 175
              LL+GNK+D    R V+K EG+  A  +GCLF E SA     +V+  F E V + 
Sbjct: 128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  196 bits (499), Expect = 3e-64
 Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 16/178 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS---PTIGVDFKIKHVALGGKK---MKLAIWD 67
            KL+++G++G GK+TLL         +L     T+G+D K   + +  K+   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
            AG+E F +    +       + VYD+++     +    W   I   +++     +LVG 
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS--SPVILVGT 120

Query: 128 KVDKESER---VVSKKEGIDFAREYG-----CLFLECSAKTRVNVEQCFEELVLKILD 177
            +D   E+       K   +   + G           + +    + +  + ++ + L+
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  190 bits (484), Expect = 8e-62
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 8/190 (4%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFT--SDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWD 67
            ++++LIG+ GVGKSTL   F    D+ +     +G D   + + + G+    + L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
             G+  +  L     +     ++VY +T R +F   ++    ++      +D   +LVGN
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGN 122

Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSS 187
           K D    R VS  EG   A  +   F+E SA  + NV++ FE +V ++        +   
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNER 182

Query: 188 GVKKNIFKES 197
            +     KES
Sbjct: 183 RLAYQKRKES 192

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  189 bits (482), Expect = 1e-61
 Identities = 31/167 (18%), Positives = 69/167 (41%), Gaps = 10/167 (5%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K+ ++G+   GKS L+  + + T+ +     G  FK K + + G+   L I D  G   
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFK-KEIVVDGQSYLLLIRDEGGPPE 79

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--K 131
            +     +      ++ V+ +    +F  +   +   +  +    +   +LVG +     
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 132 ESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKILD 177
            + RV+        + +   C + E  A   +NVE+ F+++  K++ 
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  188 bits (480), Expect = 2e-61
 Identities = 36/180 (20%), Positives = 75/180 (41%), Gaps = 16/180 (8%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           S  S  E     +L ++GD+  GKS+L+  F + +++ L  T    +K K + + G+   
Sbjct: 1   SMRSIPEL----RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHL 55

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY----STNQ 118
           + I + AG    +     +   A  +I V+ +   ++F  ++     ++           
Sbjct: 56  VLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGL 109

Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDF-AREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
               +   +++   S RVV         A    C + E  A   +NV++ F+E+  K++ 
Sbjct: 110 ALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  174 bits (443), Expect = 1e-55
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 7/181 (3%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
            +   +      K++++GD  VGK+ LLL+F+         PT+  +F    +    ++ 
Sbjct: 13  GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV-MKYKNEEF 71

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
            L +WDTAGQE +  L    Y  +  +++ + V  R +F N++  W  EI  Y       
Sbjct: 72  ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT--AK 129

Query: 122 KLLVGNKVD--KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
            +LVG KVD  K+    V+K+EG D  ++ GC+ ++E S+  ++ + + FE+ V  I   
Sbjct: 130 TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

Query: 179 P 179
            
Sbjct: 190 K 190

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  182 bits (463), Expect = 5e-55
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 15/193 (7%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-- 57
             S           K+ LIGD   GK++LL     +TF  + S T G++   K       
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 58  ------GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI 111
                  K+     WD  GQE        +   +   +++ D     T +N    W + I
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNK-HYWLRHI 144

Query: 112 DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
           + Y        ++V NK+D+     + +K+  +        F   S K    VE   + L
Sbjct: 145 EKYGGK--SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

Query: 172 VLKILDTPSLLSE 184
              +L   S+   
Sbjct: 203 KSAVLHPDSIYGT 215

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  158 bits (401), Expect = 4e-49
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 26/207 (12%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K + +GD  VGK+ +L+ +TS+ F  +  PT+  +F   +VA+ G+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
            +  L    YRGA   ++ + +  + ++ N+   W  E+  ++ N   +  LVG K+D  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--LVGTKLDLR 126

Query: 131 ------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTPSLLS 183
                  +   V++  +G +  ++ G   ++ECS+KT+ NV+  F+  +  +L  P    
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR-- 184

Query: 184 EGSSGVKKNIFKESPPQNDASTTGCCS 210
                      KE P +        CS
Sbjct: 185 -----------KEVPRRRKNHRRSGCS 200

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  156 bits (397), Expect = 7e-49
 Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 15/175 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K + +GD  VGK+ LL+S+TS+TF  +  PT+  +F    V + G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
            +  L    YRGA   I+ + +  + ++ N++  W  E+  Y+     +  LVG K+D  
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDLR 125

Query: 131 --------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
                         ++  +G +  +  G   ++ECS+K++ NV+  F+  +  +L
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  157 bits (398), Expect = 1e-48
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 17/180 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K++L+GD G GK++LL+ F    F E  +PT+   + + ++ + GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
            +  L   +Y  A  +++ +DVT  ++F N+ + W  E++ +        ++VG K D  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK--VPIIVVGCKTDLR 151

Query: 131 ----------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
                     +     V+   G + AR  G + +LECSA+   NV   F+E     L + 
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  150 bits (380), Expect = 4e-46
 Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 20/182 (10%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
               KL+++GD   GK+ LL+ F+ D F E   PT+  +  I  + + GK+++LA+WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQE +  L    Y     I+M + +   D+  N+ + W  E+  +  N     +LVGNK 
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKK 139

Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEE---LVL 173
           D            K  +  V  +EG D A       +LECSAKT+  V + FE      L
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

Query: 174 KI 175
           ++
Sbjct: 200 QV 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  149 bits (377), Expect = 2e-45
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 17/179 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E   PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  L    Y     I+M + V   D+  N+ + W  E+  +  N     +LV NK D   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN--VPIILVANKKDLRS 143

Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
                    +  +  V   +G   A       +LECSAKT+  V + FE      L   
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  146 bits (370), Expect = 1e-44
 Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 17/177 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLR 147

Query: 131 ----------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
                     ++    ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  145 bits (367), Expect = 3e-44
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 15/178 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K +++GD  VGK+ LL+S+T++ F         D    +V + GK + L +WDTAGQE +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD---- 130
             L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D    
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLRDD 124

Query: 131 --------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
                   ++    ++  +G+  A+E G + +LECSA T+  ++  F+E +  +L  P
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  145 bits (367), Expect = 5e-44
 Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +L+GD  VGK++L++S+T++ +  E  PT   D     V++ G+ ++L + DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           F  L    Y      ++ + V    +F N+++ W  EI  +        +LVG + D   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK--APIILVGTQSDLRE 138

Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTPS 180
                    K  E+ V ++     A E     ++ECSA T+ N+++ F+  ++  +    
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  143 bits (362), Expect = 2e-43
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 18/184 (9%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
             S      +   K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++
Sbjct: 17  RGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDTQR 75

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           ++L++WDT+G   +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N   
Sbjct: 76  IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN--T 133

Query: 121 IKLLVGNKVD------------KESERVVSKKEGIDFAREYGCL-FLECSAK-TRVNVEQ 166
             LLVG K D               +  VS  +G + A++ G   ++ECSA  +  +V  
Sbjct: 134 KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRD 193

Query: 167 CFEE 170
            F  
Sbjct: 194 IFHV 197

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  141 bits (356), Expect = 1e-42
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 17/189 (8%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
            SS +      + K +++GD  VGK+ LL+S+ +D F EE  PT+  D     V +GGK+
Sbjct: 7   RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 65

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N   
Sbjct: 66  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--V 123

Query: 121 IKLLVGNKVD------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQC 167
             LL+G ++D               E+ +  ++G   A+E G   ++ECSA T+  ++  
Sbjct: 124 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183

Query: 168 FEELVLKIL 176
           F+E ++ IL
Sbjct: 184 FDEAIIAIL 192

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  140 bits (353), Expect = 7e-42
 Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 18/193 (9%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
              + Q      KL+L+GD   GK+ +L     D + E   PT+  ++         +++
Sbjct: 17  QGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLE-TEEQRV 75

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           +L++WDT+G   +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +    
Sbjct: 76  ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS--TR 133

Query: 122 KLLVGNKVD------------KESERVVSKKEGIDFAREYGCL-FLECSAKTR-VNVEQC 167
            LL+G K D             + +  +S ++G   A++ G   +LE SA T   ++   
Sbjct: 134 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193

Query: 168 FEELVLKILDTPS 180
           F    +  L+ PS
Sbjct: 194 FRTASMLCLNKPS 206

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  137 bits (346), Expect = 4e-41
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 18/171 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDTQRIELSLWDTSGSPY 67

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN--TKMLLVGCKSDLRT 125

Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAK-TRVNVEQCFEE 170
                       +  VS  +G + A++ G   ++ECSA  +  +V   F  
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  115 bits (289), Expect = 3e-31
 Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
             +    +    L K +++GD  VGK+ LL+S+T++ F         D    +V + GK 
Sbjct: 143 KTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP 202

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           + L +WDTAG E +  L    Y      ++ + +    +F ++   W  E+  +  N   
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262

Query: 121 IKLLVGNKVD------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQC 167
           I  LVG K+D            ++    ++  +G+  A+E G + +LECSA T+  ++  
Sbjct: 263 I--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320

Query: 168 FEELVLKILDTP 179
           F+E +  +L  P
Sbjct: 321 FDEAIRAVLCPP 332

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  111 bits (278), Expect = 3e-30
 Identities = 37/221 (16%), Positives = 63/221 (28%), Gaps = 67/221 (30%)

Query: 20  GDSGVGKSTLLLSFTS----DTFEELSPTIG-VDFKIKHV--------------ALGGKK 60
           G  G+GKS L   F      +   + +  +   DF  + V                   +
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 61  MKLAIW-------DTAGQERFRTLTSSYYRGA---------------------------- 85
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 86  ---------QGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134
                     G ++  DV+R     F +    +   +           ++V  K D+  E
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVE 213

Query: 135 RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           R +        +++     +E SA++ VNV+  F  LV  I
Sbjct: 214 RYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 91.3 bits (227), Expect = 3e-23
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 22/182 (12%)

Query: 14  FKLLLIGDSGVGKSTLL----LSFTSDTFEEL-------SPTIGVDF-KIKHVALGGKKM 61
           FK++  G    GK+T L             E+         T+  DF  +    + G K 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA--KEIDLYSTNQD 119
           +  ++   GQ  +        RG  GI+ V D        N   +    + +  Y    D
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 120 CIKLLVG-NKVDKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            + +++  NK D        +V      +         LE  A     V +  +E+   +
Sbjct: 135 DVPIVIQVNKRDLPDALPVEMVRAVVDPE----GKFPVLEAVATEGKGVFETLKEVSRLV 190

Query: 176 LD 177
           L 
Sbjct: 191 LA 192

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 79.6 bits (197), Expect = 5e-19
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 20/178 (11%)

Query: 10  FDYLF------KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKL 63
           FD L+      ++L++G  G GK+T+L            PTIG  F ++ ++   K +KL
Sbjct: 9   FDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG--FNVETLSY--KNLKL 64

Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK---EIDLYSTNQDC 120
            +WD  GQ   R     YY     +I V D T +D  +  +        E +L    QD 
Sbjct: 65  NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL----QDA 120

Query: 121 IKLLVGNKVDKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             L+  NK D+    S   VSK+  +   ++     +  SA     + +  + L+  I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 78.4 bits (194), Expect = 2e-18
 Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 14/168 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K++++G    GK+T+L  F+ +     SPTIG    ++ + +     +  +WD  GQE 
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVEEIVI--NNTRFLMWDIGGQES 72

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK---EIDLYSTNQDCIKLLVGNKVD 130
            R+  ++YY   + +I+V D T R+  +   +   K     DL    +    L+  NK D
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL----RKAGLLIFANKQD 128

Query: 131 KE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +   +   +S+   +   +++      C A T   + Q  E ++ ++
Sbjct: 129 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  G   
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKV 129
            R     YY     +I V D   RD        L  +  +E +L    +  I ++  NK 
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAM-LEEEEL----RKAILVVFANKQ 118

Query: 130 DKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           D E   +   ++   G+   ++      + SA     +++  E LV
Sbjct: 119 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 78.1 bits (193), Expect = 3e-18
 Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 13/174 (7%)

Query: 10  FDYLF-----KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLA 64
           F  +F     ++L++G    GK+T+L            PTIG  F ++ V    K +   
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFT 76

Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           +WD  GQ++ R L   Y++  QG+I V D   R+     +    +++      +D + L+
Sbjct: 77  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-QESADELQKMLQEDELRDAVLLV 135

Query: 125 VGNKVDKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             NK D         ++ K G+   R          A     +    + L  ++
Sbjct: 136 FANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 76.8 bits (190), Expect = 4e-18
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 16/168 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R L   Y++  QG+I V D   R+        L  +   E +L    +D + L+  NK D
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM-LAEDEL----RDAVLLVFANKQD 112

Query: 131 KE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
                +   ++ K G+   R          A +   + +  + L  ++
Sbjct: 113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 77.3 bits (191), Expect = 5e-18
 Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 14/168 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K++++G    GK+T+L  F+ +     SPTIG    ++ + +     +  +WD  GQE 
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVEEIVI--NNTRFLMWDIGGQES 77

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK---EIDLYSTNQDCIKLLVGNKVD 130
            R+  ++YY   + +I+V D T R+  +   +   K     DL    +    L+  NK D
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL----RKAGLLIFANKQD 133

Query: 131 KE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +   +   +S+   +   +++      C A T   + Q  E ++ ++
Sbjct: 134 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 76.5 bits (189), Expect = 1e-17
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            +LL++G    GK+T+L  F  +  + +SPT+G  F IK +    +  KL IWD  GQ+ 
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEH--RGFKLNIWDVGGQKS 74

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKV 129
            R+   +Y+    G+I V D   R    +    L  +   E  L         L+  NK 
Sbjct: 75  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL-LVEERL----AGATLLIFANKQ 129

Query: 130 DKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           D     S   + +   +D  R +      CSA T  ++    + L+  I
Sbjct: 130 DLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+++L            PT+G    ++ +    K +   +WD  GQ  
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG--VNLETLQY--KNISFEVWDLGGQTG 78

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKV 129
            R     Y+     +I V D T RD        L  +   E +L    +  + L+  NK 
Sbjct: 79  VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL-LDEDEL----RKSLLLIFANKQ 133

Query: 130 DKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
           D     SE  ++++ G+          ++ S+KT   + +  + LV
Sbjct: 134 DLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 74.2 bits (183), Expect = 7e-17
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 16/169 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++LL+G    GK+TLL    S+    ++PT G  F IK V    +  KL +WD  GQ +
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQS--QGFKLNVWDIGGQRK 72

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
            R    SY+     +I V D   R  F      L ++  +E  L         L+  NK 
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL-LEEEKL----SCVPVLIFANKQ 127

Query: 130 DKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           D         +++   +   R+       CSA T   V+     +   +
Sbjct: 128 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 16/171 (9%)

Query: 14  FKLLLIGDSGVGKSTLL--LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
             +L +G    GK+T++  L  ++   + + PTIG  F I+        +   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSGQ 77

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGN 127
            R+R L   YY+  Q II V D + R         L  +     D+   ++    L   N
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP-DI--KHRRIPILFFAN 134

Query: 128 KVDKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           K+D     +   VS+   ++  ++         A     +++  + L  +I
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 26/176 (14%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           KL+ +G    GK+TLL     D   +  PT+      + + + G  M    +D  G  + 
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH--PTSEELTIAG--MTFTTFDLGGHIQA 82

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL---YSTNQDCIKLLVGNKVDK 131
           R +  +Y     GI+ + D    +          +E+D      T  +   L++GNK+D+
Sbjct: 83  RRVWKNYLPAINGIVFLVDCADHERL----LESKEELDSLMTDETIANVPILILGNKIDR 138

Query: 132 E---SERVVSKKEGI-DFAREYGCLFLE-----------CSAKTRVNVEQCFEELV 172
               SE  + +  G+       G + L+           CS   R    + F  + 
Sbjct: 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 72.2 bits (178), Expect = 5e-16
 Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           KLL +G    GK+TLL    +D    L PT       + +A+    +K   +D  G  + 
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH--PTSEELAI--GNIKFTTFDLGGHIQA 80

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R L   Y+    GI+ + D    + F      L  ++          +D   +++GNK+D
Sbjct: 81  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-----ELKDVPFVILGNKID 135

Query: 131 KE---SERVVSKKEGIDFAREYGCLFLE-------CSAKTRVNVEQCFEELV 172
                SE  +    G+        +  +       CS   R    + F+ L 
Sbjct: 136 APNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 73.5 bits (180), Expect = 7e-16
 Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 20/187 (10%)

Query: 15  KLLLIGDSGVGKST----LLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           KLLL+G SG GKS+    +  ++++     L  TI    +  H+   G  M L +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLGN-MTLNLWDCGG 61

Query: 71  QERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           Q+ F            ++  Q +I V+DV   +   ++         L   + D    ++
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 126 GNKVD--KESERVVS----KKEGIDFAREYGCLFLEC--SAKTRVNVEQCFEELVLKILD 177
            +K+D  +  +R        K   + + E+G   L    ++    ++ + + ++V  ++ 
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIP 181

Query: 178 TPSLLSE 184
             S    
Sbjct: 182 NMSNHQS 188

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 70.8 bits (173), Expect = 2e-15
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 15  KLLLIGDSGVGKSTLLLSFTS-----DTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           ++LL+G    GKS++           +T   L  T         ++     +   IWD  
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNK--IYKDDISNSS-FVNFQIWDFP 77

Query: 70  GQERFRTLTS---SYYRGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLL 124
           GQ  F   T      +RG   +I V D      +  T L      +    + +   +   
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPD---MNFE 133

Query: 125 V-GNKVDKESE 134
           V  +KVD  S+
Sbjct: 134 VFIHKVDGLSD 144

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 17/167 (10%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G  F ++ +  G   +K  +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNK 128
           RFR++   Y RG   I+ + D   ++        L ++  K        Q    L++GNK
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-----QLQGIPVLVLGNK 133

Query: 129 VDKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
            D      E+ + +K  +   ++        S K + N++   + L+
Sbjct: 134 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 16/182 (8%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
                         ++L++G    GK+T+L            PTIG  F ++ V    K 
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KN 208

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYST 116
           +   +WD  GQ++ R L   Y++  QG+I V D   R+        L  +   E +L   
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM-LAEDEL--- 264

Query: 117 NQDCIKLLVGNKVDKE---SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL 173
            +D + L+  NK D     +   ++ K G+   R          A +   + +  + L  
Sbjct: 265 -RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 323

Query: 174 KI 175
           ++
Sbjct: 324 QL 325

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK-MKLAIWDTAGQER 73
            +L +G    GK+ L +   +  + +   +I          +   +   L + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES 66

Query: 74  FR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLV-GNK 128
            R  L   +   A+ ++ V D         + D+      +   +   ++   LL+  NK
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSA--AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 129 VD 130
            D
Sbjct: 125 QD 126

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
            +++ G    GK++LL   T+D+      +          A       + + D  G  + 
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-----PLSAADYDGSGVTLVDFPGHVKL 104

Query: 75  RTLTSSYYR----GAQGIIMVYD-VTRRDTFTNLADIWAKEI-DLYSTNQDCIK-----L 123
           R   S Y +      +G+I + D          L    A+ + D+ S  +   +     L
Sbjct: 105 RYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTT-AEFLVDILSITESSCENGIDIL 160

Query: 124 LVGNKVDK 131
           +  NK + 
Sbjct: 161 IACNKSEL 168

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 57.4 bits (138), Expect = 4e-10
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 16  LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75
           +LL+G    GKS++      +     +  +               + LA+ +  GQ  + 
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60

Query: 76  TLT---SSYYRGAQGIIMVYDVTR--RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             +      ++    ++ V D      +  TNLA I       Y  N      ++ +KVD
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEY---AYKVNPSINIEVLIHKVD 117

Query: 131 KESE 134
             SE
Sbjct: 118 GLSE 121

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 18/126 (14%)

Query: 16  LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75
           +++ G    GK++LL   T+D+      +          A       + + D  G  + R
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-----PLSAADYDGSGVTLVDFPGHVKLR 69

Query: 76  TLTSSYY----RGAQGIIMVYD-VTRRDTFTNLADIWAKEIDLYSTNQDCIK-----LLV 125
              S Y     +  +G+I + D          L       +D+ S  +   +     L+ 
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGIDILIA 126

Query: 126 GNKVDK 131
            NK + 
Sbjct: 127 CNKSEL 132

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 33/189 (17%), Positives = 54/189 (28%), Gaps = 52/189 (27%)

Query: 24  VGKSTLL--LSF------------TSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
            GKSTLL  L              T D  EE                        + DTA
Sbjct: 244 AGKSTLLNTLLGQERAIVSHMPGTTRDYIEE------------CFIHDK--TMFRLTDTA 289

Query: 70  GQ------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN 117
           G              R    +      A  I+ + D+          D   +  +L + +
Sbjct: 290 GLREAGEEIEHEGIRR----SRMKMAEADLILYLLDLGTERL----DDELTEIRELKAAH 341

Query: 118 QDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
                L V NK+D+ +    +       A   G   +  SA     ++   ++ +  ++ 
Sbjct: 342 PAAKFLTVANKLDRAAN---ADALIRAIADGTGTEVIGISALNGDGIDT-LKQHMGDLVK 397

Query: 178 TPSLLSEGS 186
               L E S
Sbjct: 398 NLDKLHEAS 406

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 43/188 (22%), Positives = 63/188 (33%), Gaps = 54/188 (28%)

Query: 14  FKLLLIGDSGVGKSTLL--LSF------------TSDTFEELSPTIGVDFKIKHVALGGK 59
            K+++ G    GKS+LL  L+             T D   E            H+ + G 
Sbjct: 5   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLRE------------HIHIDG- 51

Query: 60  KMKLAIWDTAGQ-------ERF---RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK 109
            M L I DTAG        ER    R         A  ++ + D T  D   + A+IW +
Sbjct: 52  -MPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRVLFMVDGTTTDA-VDPAEIWPE 107

Query: 110 EIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169
            I            +V NK D   E       G+     +  + L  SA+T   V    +
Sbjct: 108 FIARLPAKLPIT--VVRNKADITGE-----TLGMSEVNGHALIRL--SARTGEGV----D 154

Query: 170 ELVLKILD 177
            L   +  
Sbjct: 155 VLRNHLKQ 162

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 32/212 (15%), Positives = 59/212 (27%), Gaps = 70/212 (33%)

Query: 16  LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-- 73
           +L+ G  G GK+ +      D          +DFKI              W         
Sbjct: 153 VLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKI-------------FWLNLKNCNSP 195

Query: 74  ---FRTLTSSYYR----------GAQGIIMVYDVTR---RDTFTN---------LADIWA 108
                 L    Y+           +  I +     +   R    +         L ++  
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 109 KEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
            +    + N  C K+L+  +  K+    +S       A     + L+  + T    E   
Sbjct: 256 AKA-WNAFNLSC-KILLTTR-FKQVTDFLS-------AATTTHISLDHHSMTLTPDEV-- 303

Query: 169 EELVLKILDTPSLLSEGSSGVKKNIFKESPPQ 200
           + L+LK LD                 ++ P +
Sbjct: 304 KSLLLKYLDCR--------------PQDLPRE 321

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 14 FKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKMKL 63
          F L+++G+SG+GKSTL+ S F +D +         E++  T+ ++     +   G K++L
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78

Query: 64 AIWDTAGQERFRTLTSSY 81
           + DT G          +
Sbjct: 79 TVVDTPGYGDAINCRDCF 96

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 14  FKLLLIGDSGVGKSTLL-----LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           F +L +G++G+GKSTL+       F  +      P + +      +     ++KL I  T
Sbjct: 43  FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102

Query: 69  AG 70
            G
Sbjct: 103 VG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.98
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.98
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.98
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.88
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.88
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.87
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.83
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.83
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.81
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.8
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.8
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.79
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.69
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.66
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.65
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.65
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.62
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.61
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.6
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.59
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.57
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.56
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.44
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.38
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.31
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.27
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.23
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.12
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.01
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.0
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.99
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.99
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.96
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.96
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.87
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.86
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.79
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.45
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.38
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.37
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.3
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.26
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.21
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.1
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.01
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.0
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.96
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.9
2xxa_A	433	Signal recognition particle protein; protein trans	97.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.6
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.48
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.45
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.42
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.35
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.32
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.32
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.3
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.29
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.29
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.28
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.24
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.22
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.22
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.21
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.2
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.2
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.16
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.15
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.15
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.1
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.09
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.09
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.08
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.07
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.07
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.06
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.05
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.05
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.04
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.03
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.03
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.02
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.02
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.01
1g6h_A	257	High-affinity branched-chain amino acid transport	97.01
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.01
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.01
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.99
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.99
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.98
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.98
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.98
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.98
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.98
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.97
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.97
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.97
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.96
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.96
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.96
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.95
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.94
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.94
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.94
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.93
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.93
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.93
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.93
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.92
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.92
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.89
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.89
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.89
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.89
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.88
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.88
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.88
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.87
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.86
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.85
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.85
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.85
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.84
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.84
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.84
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.83
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.83
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.83
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.82
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.82
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.82
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.81
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.81
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.8
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.8
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.8
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.79
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.78
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.78
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.77
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.77
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.76
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.76
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.75
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.75
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.75
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.74
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.74
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.73
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.72
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.72
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.71
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.7
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.69
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.69
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.69
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.69
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.68
3co5_A	143	Putative two-component system transcriptional RES	96.68
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.68
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.67
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.67
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.67
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.67
1via_A	175	Shikimate kinase; structural genomics, transferase	96.67
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.66
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.66
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.66
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.65
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.64
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.64
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.63
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.63
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.61
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.61
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.6
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.6
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.6
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.59
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.59
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.58
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.58
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.58
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.56
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.55
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.55
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.53
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.51
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.51
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.49
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.47
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.47
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.47
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.47
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.46
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.44
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.42
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.42
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.41
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.41
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.4
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.4
3bos_A	242	Putative DNA replication factor; P-loop containing	96.38
2og2_A	359	Putative signal recognition particle receptor; nuc	96.37
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.37
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.36
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.36
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.35
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.35
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.33
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.33
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.33
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.32
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.32
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.27
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.27
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.26
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.24
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.24
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.22
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.17
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.15
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.14
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.14
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.13
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.12
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.11
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.1
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.08
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.08
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.07
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.06
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.06
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.06
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.05
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.04
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.03
3uc9_A	233	Increased recombination centers protein 6; rossman	96.03
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.98
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.96
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.96
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.91
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.91
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.87
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.86
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.84
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.8
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.77
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.76
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.76
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.75
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.74
2qgz_A	308	Helicase loader, putative primosome component; str	95.73
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.72
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.72
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.72
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.71
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.69
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.69
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.68
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.68
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.66
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.65
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.65
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.63
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.62
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.61
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.59
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.57
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.57
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.56
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.54
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.53
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.51
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.5
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.49
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.48
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.47
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.45
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.44
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.44
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.43
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.43
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.43
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.41
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.39
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.39
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.38
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.35
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.35
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.34
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.33
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.33
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.33
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.28
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.26
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.26
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.26
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.25
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.24
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.23

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.7e-44  Score=263.74  Aligned_cols=179  Identities=36%  Similarity=0.603  Sum_probs=142.9

Q ss_pred             CCCCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 028292            1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (211)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (211)
                      |++......+.+.+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+.+++..+.+.||||+|++++..+++
T Consensus         1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~   80 (216)
T 4dkx_A            1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP   80 (216)
T ss_dssp             ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred             CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence            55555555566789999999999999999999999998 67789999999999999999999999999999999999999


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK  159 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (211)
                      .++++++++++|||++++++|+.+.. |+..+.... ..++|++||+||+|+.+.+.+..+++.+++..+++.|+++||+
T Consensus        81 ~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk  158 (216)
T 4dkx_A           81 SYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK  158 (216)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred             HHhccccEEEEEeecchhHHHHHHHH-HHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCC
Confidence            99999999999999999999999998 666665555 5789999999999998888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCc
Q 028292          160 TRVNVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~~~  181 (211)
                      +|.||+++|.+|++.+......
T Consensus       159 tg~nV~e~F~~i~~~i~~~~~~  180 (216)
T 4dkx_A          159 AGYNVKQLFRRVAAALPGMEST  180 (216)
T ss_dssp             TTBSHHHHHHHHHHHC------
T ss_pred             CCcCHHHHHHHHHHHHHhhhcc
Confidence            9999999999999998765443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=9.9e-37  Score=221.73  Aligned_cols=170  Identities=56%  Similarity=0.895  Sum_probs=153.6

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ..+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            356789999999999999999999999988 5677888888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        84 vilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  161 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA  161 (206)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999887 777676655 568999999999999887788888899999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028292          168 FEELVLKILDTPS  180 (211)
Q Consensus       168 ~~~i~~~~~~~~~  180 (211)
                      |.+|.+.+.+...
T Consensus       162 ~~~l~~~i~~~~~  174 (206)
T 2bcg_Y          162 FLTMARQIKESMS  174 (206)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-37  Score=225.37  Aligned_cols=180  Identities=43%  Similarity=0.718  Sum_probs=144.9

Q ss_pred             CCCCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 028292            1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (211)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (211)
                      |++.......+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+.
T Consensus         1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (223)
T 3cpj_B            1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS   80 (223)
T ss_dssp             ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred             CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence            55566666678899999999999999999999999988 56667888888888888999999999999999999999999


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK  159 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (211)
                      .+++.+|++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+
T Consensus        81 ~~~~~~d~vilV~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  158 (223)
T 3cpj_B           81 AYYRGAVGALIVYDISKSSSYENCNH-WLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSAL  158 (223)
T ss_dssp             GGTTTCCEEEEEEC-CCHHHHHHHHH-HHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            99999999999999999999999887 777776654 5689999999999997777788888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCcc
Q 028292          160 TRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      ++.|++++|++|.+.+.+.....
T Consensus       159 ~~~gi~~l~~~l~~~i~~~~~~~  181 (223)
T 3cpj_B          159 NSENVDKAFEELINTIYQKVSKH  181 (223)
T ss_dssp             -CCCHHHHHHHHHHHHTTCC---
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999998765543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=221.46  Aligned_cols=173  Identities=35%  Similarity=0.575  Sum_probs=147.7

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR   83 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (211)
                      +.+.+..+.++|+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.|||+||++.+...+..++.
T Consensus         6 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (206)
T 2bov_A            6 PKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR   84 (206)
T ss_dssp             -----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH
T ss_pred             ccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHh
Confidence            3445566789999999999999999999999887 45556655444 456778888899999999999999999999999


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      .+|++++|||++++.+|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|
T Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  163 (206)
T 2bov_A           85 SGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN  163 (206)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred             hCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence            9999999999999999999877 666666655456899999999999987777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 028292          164 VEQCFEELVLKILDTP  179 (211)
Q Consensus       164 v~~~~~~i~~~~~~~~  179 (211)
                      ++++|++|.+.+.++.
T Consensus       164 i~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          164 VDKVFFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            9999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2e-35  Score=210.92  Aligned_cols=173  Identities=33%  Similarity=0.548  Sum_probs=149.5

Q ss_pred             CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292            4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY   82 (211)
Q Consensus         4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   82 (211)
                      +.......+.+||+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++
T Consensus         9 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   87 (183)
T 3kkq_A            9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYM   87 (183)
T ss_dssp             -----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHH
T ss_pred             ccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHH
Confidence            33345566889999999999999999999999887 55666666655 67778899999999999999999999999999


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC-CC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TR  161 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~  161 (211)
                      +++|++++|||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||+ ++
T Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (183)
T 3kkq_A           88 RTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP  166 (183)
T ss_dssp             HHCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSC
T ss_pred             hcCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCC
Confidence            99999999999999999999887 66666554446789999999999998888899999999999999999999999 99


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 028292          162 VNVEQCFEELVLKILDT  178 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~  178 (211)
                      .|++++|++|.+.+.++
T Consensus       167 ~~v~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          167 LNVDKTFHDLVRVIRQQ  183 (183)
T ss_dssp             BSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhhC
Confidence            99999999999988753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.3e-35  Score=210.80  Aligned_cols=174  Identities=49%  Similarity=0.825  Sum_probs=150.5

Q ss_pred             CCCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 028292            2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS   80 (211)
Q Consensus         2 ~~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (211)
                      +|+......++.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..
T Consensus         4 ~s~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   83 (179)
T 1z0f_A            4 GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS   83 (179)
T ss_dssp             -------CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHH
T ss_pred             CCCCCccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHH
Confidence            4455556677899999999999999999999999987 566778888888888889999999999999999999999999


Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                      +++++|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++..++++++++||++
T Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (179)
T 1z0f_A           84 YYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT  161 (179)
T ss_dssp             HHHTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HhccCCEEEEEEeCcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence            9999999999999999999998877 666666554 46899999999999977777888899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 028292          161 RVNVEQCFEELVLKILD  177 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~  177 (211)
                      |.|++++|++|.+.+.+
T Consensus       162 ~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          162 GENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             CTTHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999998864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=4.2e-35  Score=208.83  Aligned_cols=171  Identities=29%  Similarity=0.439  Sum_probs=147.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ..+.++|+|+|++|||||||+++|+++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34689999999999999999999998887 66677777766 67778899999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++|||++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            99999999999999988 66666555546789999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcc
Q 028292          169 EELVLKILDTPSLL  182 (211)
Q Consensus       169 ~~i~~~~~~~~~~~  182 (211)
                      .+|.+.+.+.....
T Consensus       161 ~~l~~~~~~~~~~~  174 (181)
T 3t5g_A          161 RRIILEAEKMDGAC  174 (181)
T ss_dssp             HHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCCc
Confidence            99999998776443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=5.6e-35  Score=210.66  Aligned_cols=172  Identities=57%  Similarity=0.917  Sum_probs=155.3

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      +..+..+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            4456889999999999999999999999887 667788888888899999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|+++
T Consensus        91 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999887 777776665 56899999999999988888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028292          167 CFEELVLKILDTPSL  181 (211)
Q Consensus       167 ~~~~i~~~~~~~~~~  181 (211)
                      +|.+|.+.+.+....
T Consensus       169 l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          169 SFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-35  Score=212.44  Aligned_cols=170  Identities=45%  Similarity=0.819  Sum_probs=152.0

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +...++.+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            34556889999999999999999999999888 56778888888888889999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  177 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPE-WLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE  177 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999998877 777776655 5689999999999997777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      ++|.+|.+.+.+.
T Consensus       178 ~l~~~l~~~i~~~  190 (201)
T 2ew1_A          178 KLFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1e-34  Score=208.42  Aligned_cols=171  Identities=47%  Similarity=0.842  Sum_probs=152.8

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (211)
                      .....+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..++..
T Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   94 (189)
T 2gf9_A           15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG   94 (189)
T ss_dssp             CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred             CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence            345566889999999999999999999999988 5667888888888888889999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|+
T Consensus        95 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A           95 AMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV  172 (189)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999998877 666666554 568999999999999777778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      ++++++|.+.+.++
T Consensus       173 ~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          173 KQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.3e-35  Score=209.83  Aligned_cols=176  Identities=60%  Similarity=0.976  Sum_probs=154.9

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +....+.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (195)
T 1x3s_A            9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA   88 (195)
T ss_dssp             CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34556789999999999999999999999987 56778888888888889999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|+|||++++.+++.+.. |+..+.......++|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++
T Consensus        89 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (195)
T 1x3s_A           89 QGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQ  166 (195)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence            99999999999999998887 66666655545689999999999994 45577888889999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccC
Q 028292          166 QCFEELVLKILDTPSLLSE  184 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~~~~~  184 (211)
                      ++|++|.+.+.+.......
T Consensus       167 ~l~~~l~~~~~~~~~~~~~  185 (195)
T 1x3s_A          167 CAFEELVEKIIQTPGLWES  185 (195)
T ss_dssp             HHHHHHHHHHHTSGGGTCC
T ss_pred             HHHHHHHHHHHhhhhhhcc
Confidence            9999999999977655544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=213.73  Aligned_cols=171  Identities=42%  Similarity=0.781  Sum_probs=144.8

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      ++..+..+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.|||+||++.+...+..+++++
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            45567889999999999999999999999888 56677878788888888899889999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNV  164 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v  164 (211)
                      |++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++...++ +++++||+++.|+
T Consensus       103 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence            99999999999999998887 666666655 57899999999999987777888899999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028292          165 EQCFEELVLKILDTP  179 (211)
Q Consensus       165 ~~~~~~i~~~~~~~~  179 (211)
                      +++|++|.+.+.+..
T Consensus       181 ~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          181 EEAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=7.2e-35  Score=209.52  Aligned_cols=171  Identities=49%  Similarity=0.811  Sum_probs=149.4

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (211)
                      ........+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.|||+||++.+...+..++++
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            355667899999999999999999999999888 4566777888888888899999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|+
T Consensus        94 ~d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           94 AAGALLVYDITRRETFNHLTS-WLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV  171 (191)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999998887 666666554 568999999999999777778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      +++|++|.+.+.++
T Consensus       172 ~~l~~~l~~~i~~~  185 (191)
T 2a5j_A          172 EEAFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-34  Score=204.85  Aligned_cols=171  Identities=43%  Similarity=0.810  Sum_probs=143.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +..+..++|+|+|++|||||||+++|++..+  ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            3456889999999999999999999999887  35677888888888888899999999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|+|+|++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD  162 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999998877 666666655 4789999999999998888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028292          166 QCFEELVLKILDTPS  180 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~  180 (211)
                      +++++|.+.+.++..
T Consensus       163 ~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          163 LAFTAIAKELKRRSM  177 (180)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999986543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.9e-35  Score=214.90  Aligned_cols=170  Identities=29%  Similarity=0.617  Sum_probs=142.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ....++|+|+|++|+|||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            35679999999999999999999999887 55666766544 45567788889999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--------cCHHHHHHHHHHhCC-cEEEeccC
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--------VSKKEGIDFAREYGC-LFLECSAK  159 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (211)
                      |+|||++++++|+.+...|+..+....  .++|+++|+||+|+.+.+.        +..+++.+++..+++ +++++||+
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK  162 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence            999999999999998755888887664  4899999999999866543        377888889999996 99999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCcc
Q 028292          160 TRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      +|.|++++|++|.+.+.+.....
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          163 TQQNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TCTTHHHHHHHHHHHHHCC----
T ss_pred             CCCCHHHHHHHHHHHHhhhhhhc
Confidence            99999999999999998765544

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.5e-35  Score=209.60  Aligned_cols=167  Identities=51%  Similarity=0.916  Sum_probs=123.1

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      .+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            46789999999999999999999998877 45667778788888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      |+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  162 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF  162 (183)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999887 776666554 4689999999999998877888899999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028292          169 EELVLKILDT  178 (211)
Q Consensus       169 ~~i~~~~~~~  178 (211)
                      .+|.+.+.+.
T Consensus       163 ~~l~~~i~~~  172 (183)
T 2fu5_C          163 FTLARDIKAK  172 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=6.4e-35  Score=206.61  Aligned_cols=167  Identities=28%  Similarity=0.426  Sum_probs=136.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccccccccCccEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FRTLTSSYYRGAQGI   88 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~~   88 (211)
                      .+.++|+|+|++|||||||+++|.+..+....++.+.++....+.+++..+.+.+||+||+..  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            357999999999999999999999988866667788888888888999999999999999887  556677788999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++|||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999999887 66555554334689999999999998878888888888999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028292          169 EELVLKILDT  178 (211)
Q Consensus       169 ~~i~~~~~~~  178 (211)
                      ++|.+.+.+.
T Consensus       161 ~~l~~~~~~~  170 (175)
T 2nzj_A          161 EGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=204.82  Aligned_cols=170  Identities=51%  Similarity=0.868  Sum_probs=150.9

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ...++.+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            3557889999999999999999999999887 567788888888888999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++++.+++.+.. |+..+....  .++|+++|+||+|+.+.+.+...++..++...+++++++||++|.|+++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKR-WLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE  160 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            9999999999999999877 666666544  6899999999999988888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028292          167 CFEELVLKILDTPS  180 (211)
Q Consensus       167 ~~~~i~~~~~~~~~  180 (211)
                      ++++|.+.+.+...
T Consensus       161 l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          161 MFNCITELVLRAKK  174 (181)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1e-34  Score=204.60  Aligned_cols=166  Identities=39%  Similarity=0.717  Sum_probs=142.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      .++.++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35789999999999999999999999888 56778888888888888888999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++|+|++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF  160 (170)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999998887 666665544 4679999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 028292          169 EELVLKILD  177 (211)
Q Consensus       169 ~~i~~~~~~  177 (211)
                      ++|.+.+.+
T Consensus       161 ~~l~~~~~~  169 (170)
T 1z08_A          161 LDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998865

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.1e-34  Score=205.09  Aligned_cols=169  Identities=38%  Similarity=0.646  Sum_probs=148.5

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ......++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            3456789999999999999999999999888 555678888888888889999999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|+++
T Consensus        87 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE  164 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence            9999999999999998887 666666554 46899999999999988788888899999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028292          167 CFEELVLKILDT  178 (211)
Q Consensus       167 ~~~~i~~~~~~~  178 (211)
                      ++++|.+.+.+.
T Consensus       165 l~~~l~~~~~~~  176 (181)
T 2efe_B          165 IFYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHHTCC--
T ss_pred             HHHHHHHHHHhc
Confidence            999999877654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=6.3e-35  Score=205.01  Aligned_cols=164  Identities=29%  Similarity=0.405  Sum_probs=122.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      .+||+++|++|||||||++++.+.......++.+.++ ...+.+++..+.+.+||+||++.+...+..++..+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            5899999999999999999999877766666777665 456788999999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            9999999999888 555555443357899999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028292          173 LKILDT  178 (211)
Q Consensus       173 ~~~~~~  178 (211)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-35  Score=211.65  Aligned_cols=173  Identities=28%  Similarity=0.447  Sum_probs=141.5

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      ..+..+.+||+|+|.+|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.||||||++.+...+..+++.+
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            34456789999999999999999999999988 55556666555 56666777788999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|+|||++++.+|+.+.. |+..+.......++|+++|+||+|+.+.+.+...++..++..++++++++||++|.|++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  175 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQ  175 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence            99999999999999999887 66666655445689999999999998888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCc
Q 028292          166 QCFEELVLKILDTPSL  181 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~~  181 (211)
                      ++|.+|.+.+.+....
T Consensus       176 ~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          176 GIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999999876543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5e-34  Score=205.56  Aligned_cols=170  Identities=29%  Similarity=0.579  Sum_probs=148.0

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ....+.+||+|+|++|||||||+++|++..+ ..+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++++|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            3456789999999999999999999999988 556677766655 36778899999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHhCCc-EEEeccCCCCC
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE--RVVSKKEGIDFAREYGCL-FLECSAKTRVN  163 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~  163 (211)
                      ++|+|||++++.+|+.+...|...+....  .++|+++|+||+|+.+.  +.+..+++.+++..+++. ++++||++|.|
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  174 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG  174 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence            99999999999999998665888887654  67999999999999653  678889999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 028292          164 VEQCFEELVLKILDTPS  180 (211)
Q Consensus       164 v~~~~~~i~~~~~~~~~  180 (211)
                      ++++|++|.+.+.++..
T Consensus       175 i~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          175 LNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             HHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999987654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=3.7e-35  Score=213.39  Aligned_cols=169  Identities=36%  Similarity=0.656  Sum_probs=145.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ....++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45779999999999999999999999887 66777888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCcEEEeccCCCCCH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFAR-EYGCLFLECSAKTRVNV  164 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  164 (211)
                      |+|||++++.+++.+.. |+..+.....   ..++|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            99999999999998877 5555544331   2578999999999997 45567778888877 66789999999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 028292          165 EQCFEELVLKILDTPS  180 (211)
Q Consensus       165 ~~~~~~i~~~~~~~~~  180 (211)
                      +++|++|.+.+.+...
T Consensus       163 ~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          163 EQAFQTIARNALKQET  178 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999986543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-34  Score=207.32  Aligned_cols=168  Identities=48%  Similarity=0.865  Sum_probs=151.5

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ..+..+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            346789999999999999999999999988 5667888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++
T Consensus        84 ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT  161 (203)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence            999999999999998887 666666554 568999999999999887788888999999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |++|.+.+.++
T Consensus       162 ~~~l~~~i~~~  172 (203)
T 1zbd_A          162 FERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.7e-34  Score=205.41  Aligned_cols=168  Identities=46%  Similarity=0.811  Sum_probs=151.0

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ..++.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            456889999999999999999999999888 5667788888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+...++..++...+++++++||++|.|++++
T Consensus        86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (186)
T 2bme_A           86 ALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA  163 (186)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            999999999999998887 666666554 468999999999999777778888899999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |++|.+.+.+.
T Consensus       164 ~~~l~~~~~~~  174 (186)
T 2bme_A          164 FVQCARKILNK  174 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.8e-34  Score=203.18  Aligned_cols=164  Identities=41%  Similarity=0.689  Sum_probs=146.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.++|+|+|++|+|||||+++|+++.+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4679999999999999999999999887 556688888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++++
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (170)
T 1r2q_A           84 VVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999998887 666665554 46899999999999977777888889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028292          170 ELVLKIL  176 (211)
Q Consensus       170 ~i~~~~~  176 (211)
                      +|.+.+.
T Consensus       162 ~i~~~~~  168 (170)
T 1r2q_A          162 AIAKKLP  168 (170)
T ss_dssp             HHHHTSC
T ss_pred             HHHHHHh
Confidence            9988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.3e-34  Score=211.84  Aligned_cols=175  Identities=26%  Similarity=0.486  Sum_probs=143.3

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR   83 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (211)
                      .+.......+||+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++
T Consensus        19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   97 (214)
T 3q3j_B           19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYS   97 (214)
T ss_dssp             --------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence            3445566789999999999999999999999988 55667777665 456677888899999999999999999999999


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC  151 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~  151 (211)
                      ++|++|+|||++++++|+.+...|+..+....  .++|+++|+||+|+.+.            +.+..+++..++..+++
T Consensus        98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  175 (214)
T 3q3j_B           98 DSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA  175 (214)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence            99999999999999999995444888887764  68999999999999653            67889999999999999


Q ss_pred             -cEEEeccCCCCC-HHHHHHHHHHHHHcCCCcc
Q 028292          152 -LFLECSAKTRVN-VEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       152 -~~~~~Sa~~~~~-v~~~~~~i~~~~~~~~~~~  182 (211)
                       +++++||++|.| ++++|.+|.+.+.+.....
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence             999999999998 9999999999998765543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-34  Score=208.88  Aligned_cols=169  Identities=38%  Similarity=0.673  Sum_probs=149.6

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      +..++.+||+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            3456889999999999999999999999987 578889998888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++...+++++++||+++.|+++
T Consensus        98 ~iilV~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKK-WVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE  175 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred             EEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            9999999999999999877 777776655 56899999999999977677888899999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028292          167 CFEELVLKILDT  178 (211)
Q Consensus       167 ~~~~i~~~~~~~  178 (211)
                      ++++|.+.+.+.
T Consensus       176 l~~~l~~~i~~~  187 (192)
T 2fg5_A          176 LFQGISRQIPPL  187 (192)
T ss_dssp             HHHHHHHTCC--
T ss_pred             HHHHHHHHHHhh
Confidence            999999877544

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.4e-34  Score=207.62  Aligned_cols=170  Identities=36%  Similarity=0.626  Sum_probs=145.3

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccC
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRG   84 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~   84 (211)
                      .....+.+||+|+|.+|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+. .++..++++
T Consensus        14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (189)
T 1z06_A           14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN   93 (189)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence            44556789999999999999999999999888 5677888888888888999999999999999999888 888889999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC---
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR---  161 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---  161 (211)
                      +|++|+|||++++.+|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||+++   
T Consensus        94 ~d~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~  172 (189)
T 1z06_A           94 VHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDN  172 (189)
T ss_dssp             CCEEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGG
T ss_pred             CCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcc
Confidence            999999999999999999888 6666666654678999999999999777778888899999999999999999999   


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028292          162 VNVEQCFEELVLKILD  177 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~  177 (211)
                      .|++++|.+|.+.+.+
T Consensus       173 ~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          173 DHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             SCHHHHHHHHC-----
T ss_pred             cCHHHHHHHHHHHHhh
Confidence            9999999999887753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=4.2e-34  Score=201.37  Aligned_cols=164  Identities=38%  Similarity=0.691  Sum_probs=148.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+|||||.+.+...+..+++++|++|
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999999987 667888888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++.+++.+.. |+..+.... ...+|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++++
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           84 IVYDITKEETFSTLKN-WVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999998877 777776654 57899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028292          170 ELVLKIL  176 (211)
Q Consensus       170 ~i~~~~~  176 (211)
                      +|.+.+.
T Consensus       162 ~i~~~i~  168 (170)
T 1z0j_A          162 EISRRIP  168 (170)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            9998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=206.44  Aligned_cols=169  Identities=43%  Similarity=0.753  Sum_probs=150.5

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      +..++.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+.+..+.+.||||||.+.+...+..++.++|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            4456789999999999999999999999888 456678888888888888999999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||++|.|+++
T Consensus       100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVER-WLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999988877 666665544 46899999999999977777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028292          167 CFEELVLKILDT  178 (211)
Q Consensus       167 ~~~~i~~~~~~~  178 (211)
                      +|++|.+.+.++
T Consensus       178 l~~~l~~~i~~~  189 (193)
T 2oil_A          178 AFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.6e-36  Score=214.65  Aligned_cols=171  Identities=49%  Similarity=0.851  Sum_probs=154.2

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (211)
                      .+...+..+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+.+..+.+.|||+||++.+...+..++++
T Consensus        16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (191)
T 3dz8_A           16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG   95 (191)
T ss_dssp             ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred             cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence            345567889999999999999999999999887 5666777888888888888888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+
T Consensus        96 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  173 (191)
T 3dz8_A           96 AMGFILMYDITNEESFNAVQD-WATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV  173 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999998887 777776655 578999999999999888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      +++|++|.+.+.++
T Consensus       174 ~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          174 RQAFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=4.1e-34  Score=205.66  Aligned_cols=173  Identities=35%  Similarity=0.699  Sum_probs=149.7

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeE-EEEEEECCe---------EEEEEEEeCCCccc
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFK-IKHVALGGK---------KMKLAIWDTAGQER   73 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~   73 (211)
                      +++.+.+..++|+|+|++|||||||+++|++..+ ..+.++.+.++. ...+.+.+.         .+.+.+||+||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            4455677899999999999999999999999887 566777777776 556666665         78999999999999


Q ss_pred             ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcE
Q 028292           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLF  153 (211)
Q Consensus        74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      +...+..+++++|++|+|||++++.+++.+.. |+..+.......++|+++|+||+|+.+.+.+..+++.+++...++++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY  161 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCE
Confidence            99999999999999999999999999998877 67666666544789999999999997777788888999999999999


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          154 LECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       154 ~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      +++||+++.|+++++++|.+.+.++
T Consensus       162 ~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          162 FETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-34  Score=202.59  Aligned_cols=163  Identities=45%  Similarity=0.729  Sum_probs=145.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999887 5677888888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC---cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE---RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      |||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.   +.+..+++..++...+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A           82 VYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEecCChHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999887 666665554 568999999999999654   667888888999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028292          168 FEELVLKIL  176 (211)
Q Consensus       168 ~~~i~~~~~  176 (211)
                      |++|.+.+.
T Consensus       160 ~~~l~~~i~  168 (170)
T 1ek0_A          160 FLGIGEKIP  168 (170)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHHHHh
Confidence            999987654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=208.27  Aligned_cols=172  Identities=28%  Similarity=0.365  Sum_probs=142.9

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccC
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRG   84 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~   84 (211)
                      +.+....++|+|+|++|||||||+++|++... ....++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            34456789999999999999999999986544 23345556666677788899999999999999987764 67778899


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|++|+|||++++.+|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|+
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            999999999999999999888 6666655543468999999999999887888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028292          165 EQCFEELVLKILDTP  179 (211)
Q Consensus       165 ~~~~~~i~~~~~~~~  179 (211)
                      +++|.+|++.+.+..
T Consensus       176 ~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          176 RELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987644

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.4e-34  Score=204.60  Aligned_cols=171  Identities=33%  Similarity=0.539  Sum_probs=147.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      .+....++|+|+|++|||||||+++|++..+ ..+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++..+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   82 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   82 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence            3456789999999999999999999999887 556666666555 66778888899999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++++|||++++.+++.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus        83 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  161 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE  161 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            9999999999999999887 454443333367899999999999987777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028292          167 CFEELVLKILDTPS  180 (211)
Q Consensus       167 ~~~~i~~~~~~~~~  180 (211)
                      ++++|.+.+.+...
T Consensus       162 l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          162 AFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999976543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-34  Score=209.44  Aligned_cols=170  Identities=30%  Similarity=0.465  Sum_probs=141.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ....++|+|+|++|||||||+++|++..+ ..+.++.+.++. ..+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            45679999999999999999999999887 455566654443 4566788889999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      |+|||++++.+++.+.. |+..+.... ...++|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL  161 (199)
T ss_dssp             EEEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence            99999999999988877 445444432 135789999999999965 556778888899999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 028292          168 FEELVLKILDTPSLL  182 (211)
Q Consensus       168 ~~~i~~~~~~~~~~~  182 (211)
                      +++|.+.+.++....
T Consensus       162 ~~~l~~~~~~~~~~~  176 (199)
T 2gf0_A          162 FQELLTLETRRNMSL  176 (199)
T ss_dssp             HHHHHHHCSSSCEEC
T ss_pred             HHHHHHHHhhhhccc
Confidence            999999887655433

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=5.1e-34  Score=204.34  Aligned_cols=169  Identities=35%  Similarity=0.592  Sum_probs=142.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.++|+|+|++|||||||+++|++..+ ..+.++. .+.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4679999999999999999999999887 3444444 4555667778999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++.+|+.+.. |...+.......++|+++|+||+|+. ...+..+++..++..++++++++||++|.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  158 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY  158 (189)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999888 66666665546789999999999986 455678888899999999999999999999999999


Q ss_pred             HHHHHHHcCCCcc
Q 028292          170 ELVLKILDTPSLL  182 (211)
Q Consensus       170 ~i~~~~~~~~~~~  182 (211)
                      +|.+.+.+.....
T Consensus       159 ~l~~~~~~~~~~~  171 (189)
T 4dsu_A          159 TLVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhc
Confidence            9999998665433

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.2e-34  Score=202.77  Aligned_cols=165  Identities=27%  Similarity=0.361  Sum_probs=132.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRGAQGIIM   90 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~il   90 (211)
                      .+||+++|++|||||||+++|.+... ....++.+.+.....+.+++..+.+.+||+||+..+.. .+..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            68999999999999999999997766 34445556677778888999999999999999988876 67777889999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            999999999999988 5555555543568999999999999878888999999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028292          171 LVLKILDT  178 (211)
Q Consensus       171 i~~~~~~~  178 (211)
                      |.+.+..+
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-33  Score=203.93  Aligned_cols=171  Identities=30%  Similarity=0.596  Sum_probs=147.0

Q ss_pred             CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292            4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY   82 (211)
Q Consensus         4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   82 (211)
                      +++..+....++|+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++
T Consensus         9 ~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   87 (194)
T 2atx_A            9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY   87 (194)
T ss_dssp             CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred             ccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence            34455566889999999999999999999999887 55566666554 45567788889999999999999999999999


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG  150 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~  150 (211)
                      +++|++|+|||++++++|+.+...|+..+....  .++|+++|+||+|+.+.            +.+..+++.+++..++
T Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (194)
T 2atx_A           88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG  165 (194)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence            999999999999999999998755777777654  58999999999999654            4677888999999999


Q ss_pred             C-cEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          151 C-LFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       151 ~-~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      + +++++||++|.|++++|++|.+.+..
T Consensus       166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          166 ACCYVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            8 99999999999999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=4.1e-34  Score=201.44  Aligned_cols=164  Identities=53%  Similarity=0.851  Sum_probs=141.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            569999999999999999999999888 5667777878888888888888999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++.+++.+.. |+..+.... ..++|+++|+||+|+ ..+.+..+++.+++...+++++++||++|.|+++++.+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  158 (170)
T 1g16_A           82 VYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  158 (170)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999988877 666666554 468999999999999 45567788888999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028292          171 LVLKILDT  178 (211)
Q Consensus       171 i~~~~~~~  178 (211)
                      |.+.+.++
T Consensus       159 l~~~~~~~  166 (170)
T 1g16_A          159 LAKLIQEK  166 (170)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=208.38  Aligned_cols=170  Identities=50%  Similarity=0.876  Sum_probs=144.9

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      ..+....++|+|+|.+|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            34556889999999999999999999999887 56678888888888888999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNV  164 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v  164 (211)
                      |++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++... +++++++||++|.|+
T Consensus       100 d~iilV~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  177 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV  177 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence            99999999999999998877 777776655 568999999999999777778888888888874 789999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      +++|++|.+.+.++
T Consensus       178 ~~l~~~l~~~i~~~  191 (192)
T 2il1_A          178 DEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=3.6e-34  Score=201.35  Aligned_cols=164  Identities=31%  Similarity=0.605  Sum_probs=147.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ++.+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999999888 566788888888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++.+++.+.. |+..+....  .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++++
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  159 (168)
T 1z2a_A           83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK  159 (168)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            9999999999998887 666665544  6799999999999977777888889999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 028292          170 ELVLKILD  177 (211)
Q Consensus       170 ~i~~~~~~  177 (211)
                      +|.+.+.+
T Consensus       160 ~l~~~~~~  167 (168)
T 1z2a_A          160 YLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99998875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=208.39  Aligned_cols=169  Identities=46%  Similarity=0.761  Sum_probs=141.6

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ...++.+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            3456789999999999999999999999887 566777787888888888999999999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+...++..++...+++++++||++|.|+++
T Consensus       100 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  177 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  177 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998887 666665554 47899999999999977777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028292          167 CFEELVLKILDT  178 (211)
Q Consensus       167 ~~~~i~~~~~~~  178 (211)
                      +|.+|.+.+.++
T Consensus       178 l~~~l~~~i~~~  189 (200)
T 2o52_A          178 AFLKCARTILNK  189 (200)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=208.72  Aligned_cols=169  Identities=37%  Similarity=0.677  Sum_probs=137.5

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +....+.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++
T Consensus        22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  101 (199)
T 2p5s_A           22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA  101 (199)
T ss_dssp             ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred             CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence            34456789999999999999999999999987 56778888888888899999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC------CCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVSKKEGIDFAREYGCLFLECSAK  159 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (211)
                      |++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.      ..+.+..+++..++...+++++++||+
T Consensus       102 d~iilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~  179 (199)
T 2p5s_A          102 DGVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK  179 (199)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTT
T ss_pred             CEEEEEEECCChHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence            99999999999999998887 777776554 4689999999999985      456778888899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHc
Q 028292          160 TRVNVEQCFEELVLKILD  177 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~  177 (211)
                      +|.|++++|.+|.+.+.+
T Consensus       180 ~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          180 DGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TCTTHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=7.8e-34  Score=203.04  Aligned_cols=165  Identities=19%  Similarity=0.361  Sum_probs=140.3

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      .....+.+||+|+|++|||||||+++++++.+ ..+.++ +.. ....+.+++..+.+.+|||+|++.+.     +++++
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGR-FKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEE-EEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cce-EEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            45566889999999999999999999999988 445555 333 34778889999999999999988776     67789


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC--CCCcccCHHHHHHHHHHhC-CcEEEeccCCCC
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK--ESERVVSKKEGIDFAREYG-CLFLECSAKTRV  162 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~--~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  162 (211)
                      |++++|||++++.+|+.+.. |+..+.......++|+++|+||+|+  ...+.+..+++.+++..++ ++++++||++|.
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence            99999999999999999888 7777766553468999999999999  4567788899999999997 899999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028292          163 NVEQCFEELVLKILDTP  179 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~  179 (211)
                      |++++|++|.+.+.+.+
T Consensus       166 gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          166 NVERVFQDVAQKVVALR  182 (184)
T ss_dssp             THHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999987654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.6e-34  Score=207.95  Aligned_cols=169  Identities=26%  Similarity=0.365  Sum_probs=138.9

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGA   85 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~   85 (211)
                      .....+||+|+|.+|||||||+++|++...  ....++.+.++....+.+++..+.+.+|||+|... +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            445779999999999999999999996543  34445577777777888899999999999999876 455667788899


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|+|||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||++|.||+
T Consensus       113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999887 55555443324689999999999997767788888888888999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      ++|++|.+.+...
T Consensus       192 elf~~l~~~i~~~  204 (211)
T 2g3y_A          192 ELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=4.4e-34  Score=202.89  Aligned_cols=166  Identities=38%  Similarity=0.651  Sum_probs=146.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ..+.++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            34679999999999999999999999887 56677888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      |+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|+++++
T Consensus        91 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  168 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSK-WIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF  168 (179)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999998887 665555544 4689999999999998777788888899999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 028292          169 EELVLKILD  177 (211)
Q Consensus       169 ~~i~~~~~~  177 (211)
                      ++|.+.+.+
T Consensus       169 ~~l~~~~~~  177 (179)
T 2y8e_A          169 RRVAAALPG  177 (179)
T ss_dssp             HHHHHTCC-
T ss_pred             HHHHHHHhh
Confidence            999987643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.9e-33  Score=198.45  Aligned_cols=167  Identities=40%  Similarity=0.705  Sum_probs=143.5

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ....++|+|+|++|+|||||++++++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45779999999999999999999999887 56778888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCcEEEeccCCCCCH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFAR-EYGCLFLECSAKTRVNV  164 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  164 (211)
                      ++|||++++.+++.+.. |+..+.....   ..++|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|+
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            99999999999998877 6666654432   2678999999999996 55677888888888 56689999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      +++|++|.+.+.+.
T Consensus       162 ~~l~~~l~~~~~~~  175 (177)
T 1wms_A          162 AAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=204.80  Aligned_cols=167  Identities=28%  Similarity=0.467  Sum_probs=139.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ......+||+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.||||||++.+..+ ..++..+|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            3445789999999999999999999999987 56677777655 455778899999999999999888774 56889999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEecc-CCCCC
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSA-KTRVN  163 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~  163 (211)
                      ++|+|||++++++|+.+.. |+..+.....  ..++|+++|+||+|+...+.+..+++.+++..++++++++|| ++|.|
T Consensus        94 ~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g  172 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH  172 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence            9999999999999999887 6666655431  268999999999999877788889999999999999999999 89999


Q ss_pred             HHHHHHHHHHHHHc
Q 028292          164 VEQCFEELVLKILD  177 (211)
Q Consensus       164 v~~~~~~i~~~~~~  177 (211)
                      ++++|++|.+.+.+
T Consensus       173 v~~lf~~l~~~i~~  186 (187)
T 3c5c_A          173 VQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=9.6e-34  Score=198.99  Aligned_cols=164  Identities=37%  Similarity=0.615  Sum_probs=140.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            469999999999999999999999887 44555555443 4456788888999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            999999999999887 6666666554568999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028292          171 LVLKILD  177 (211)
Q Consensus       171 i~~~~~~  177 (211)
                      |.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-33  Score=205.64  Aligned_cols=170  Identities=52%  Similarity=0.842  Sum_probs=146.2

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (211)
                      ........++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..++..
T Consensus        13 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (213)
T 3cph_A           13 NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG   92 (213)
T ss_dssp             -------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTT
T ss_pred             CCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence            345566789999999999999999999999887 6677888888888888899989999999999999999999999999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+ ..+.+..+++..++..++++++++||+++.|+
T Consensus        93 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           93 AMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNV  169 (213)
T ss_dssp             CSEEEEEEETTCHHHHHTHHH-HHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSS
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999988877 666666554 457999999999999 55567778888899999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      +++|.+|.+.+.+.
T Consensus       170 ~~l~~~l~~~~~~~  183 (213)
T 3cph_A          170 NEIFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.2e-33  Score=198.50  Aligned_cols=163  Identities=40%  Similarity=0.673  Sum_probs=141.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.++|+++|++|||||||+++|+++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887 45566666544 3556778888999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      |||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..+ +++++++||++|.|++++++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            999999999998887 5555555443578999999999999877778888888998887 78999999999999999999


Q ss_pred             HHHHHHH
Q 028292          170 ELVLKIL  176 (211)
Q Consensus       170 ~i~~~~~  176 (211)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=4.4e-34  Score=202.88  Aligned_cols=170  Identities=34%  Similarity=0.566  Sum_probs=145.6

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ..+.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+.+ ..+.+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            34679999999999999999999999887 45567777778888888876 67899999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCc-EEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCI-KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      +|+|||++++.+|+.+.. |+..+..... ..+.| +++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  161 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF  161 (178)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            999999999999988876 6666654321 12445 89999999997777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028292          166 QCFEELVLKILDTPS  180 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~  180 (211)
                      ++|++|.+.+.+...
T Consensus       162 ~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          162 LCFQKVAAEILGIKL  176 (178)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999876643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=7.6e-34  Score=208.18  Aligned_cols=180  Identities=31%  Similarity=0.474  Sum_probs=148.6

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      ......+||+|+|.+|||||||+++|++..+ ..+.++.+.+.....+... +..+.+.+|||||++.+...+..++.++
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            4456789999999999999999999998887 5556777776666666554 3448899999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLAR-WVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG  163 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred             CEEEEEEeCCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence            99999999999999998887 777776655 4669999999999998877888888888988999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCCc
Q 028292          166 QCFEELVLKILDTPSLLSEGSSGV  189 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~~~~~~~~~~  189 (211)
                      ++|.+|.+.+.+............
T Consensus       164 ~l~~~l~~~~~~~~~~~~~~~~~~  187 (218)
T 4djt_A          164 LPFLHLARIFTGRPDLIFVSNVNL  187 (218)
T ss_dssp             HHHHHHHHHHHCCTTCCBCSCCCC
T ss_pred             HHHHHHHHHHhcccccccccccCc
Confidence            999999999998877765544443

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2e-34  Score=211.19  Aligned_cols=172  Identities=38%  Similarity=0.724  Sum_probs=147.2

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCe----------EEEEEEEeCCCccccc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK----------KMKLAIWDTAGQERFR   75 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~   75 (211)
                      ....++.+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++.          .+.+.||||||++.+.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~   98 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   98 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence            34557889999999999999999999999887 455667777777777777666          7899999999999999


Q ss_pred             ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLE  155 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      ..+..++.++|++|+|||++++.+++.+.. |+..+.......++|+++|+||+|+...+.+..+++.+++...++++++
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  177 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE  177 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEE
Confidence            999999999999999999999999998876 6665554443378999999999999777778888999999999999999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHcCC
Q 028292          156 CSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       156 ~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      +||+++.|++++|++|.+.+.++.
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999987643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.2e-33  Score=198.36  Aligned_cols=164  Identities=38%  Similarity=0.629  Sum_probs=141.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.++|+|+|++|+|||||+++++++.+ ..+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887 44445554 3446677888999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++++++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            999999999999888 5555544443578999999999999777778888889999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028292          171 LVLKILD  177 (211)
Q Consensus       171 i~~~~~~  177 (211)
                      |.+.+.+
T Consensus       160 l~~~~~~  166 (167)
T 1kao_A          160 IVRQMNY  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2e-33  Score=200.88  Aligned_cols=169  Identities=36%  Similarity=0.592  Sum_probs=144.3

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ......+||+|+|++|+|||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.|||+||+..+...+..++..+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            3345679999999999999999999999887 44555555443 455677888899999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++++|||++++.+++.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  170 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  170 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            9999999999999999887 666666655456899999999999977777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028292          167 CFEELVLKILDT  178 (211)
Q Consensus       167 ~~~~i~~~~~~~  178 (211)
                      +|++|.+.+.++
T Consensus       171 l~~~l~~~i~~~  182 (187)
T 2a9k_A          171 VFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.1e-32  Score=197.79  Aligned_cols=171  Identities=33%  Similarity=0.536  Sum_probs=133.1

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (211)
                      ...+..+.++|+|+|.+|||||||+++|++..+ ..+.++.+.. ....+.+++..+.+.+||+||++.+...+..++..
T Consensus        14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (190)
T 3con_A           14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT   92 (190)
T ss_dssp             -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred             ccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence            344556789999999999999999999999887 4444444433 34567778888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|++++|||++++.+++.+.. |...+.......++|+++|+||+|+.. +.+..+++.+++...+++++++||+++.|+
T Consensus        93 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  170 (190)
T 3con_A           93 GEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGV  170 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred             CCEEEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            999999999999999998877 666676665456899999999999866 556788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028292          165 EQCFEELVLKILDTP  179 (211)
Q Consensus       165 ~~~~~~i~~~~~~~~  179 (211)
                      ++++++|.+.+.+.+
T Consensus       171 ~~l~~~l~~~~~~~~  185 (190)
T 3con_A          171 EDAFYTLVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-33  Score=203.92  Aligned_cols=167  Identities=26%  Similarity=0.552  Sum_probs=141.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ......+||+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.||||||++.+...+..++.++|
T Consensus        23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  101 (205)
T 1gwn_A           23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD  101 (205)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence            4456789999999999999999999999988 55567776655 345677888899999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhC-CcE
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYG-CLF  153 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~  153 (211)
                      ++|+|||++++.+|+.+...|+..+....  .++|+++|+||+|+.+            .+.+..+++.+++..++ +++
T Consensus       102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  179 (205)
T 1gwn_A          102 AVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY  179 (205)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence            99999999999999998544777776654  5899999999999964            25677888999999888 699


Q ss_pred             EEeccC-CCCCHHHHHHHHHHHHHc
Q 028292          154 LECSAK-TRVNVEQCFEELVLKILD  177 (211)
Q Consensus       154 ~~~Sa~-~~~~v~~~~~~i~~~~~~  177 (211)
                      +++||+ ++.|++++|++|.+.+..
T Consensus       180 ~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          180 IECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHHHHhh
Confidence            999999 689999999999998874

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2.9e-33  Score=199.96  Aligned_cols=165  Identities=27%  Similarity=0.559  Sum_probs=141.6

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ....+||+|+|++|||||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999888 55667776655 34567788889999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CcEEE
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG-CLFLE  155 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~  155 (211)
                      |+|||++++.+|+.+...|...+....  .++|+++|+||+|+.+.            +.+..+++.+++..++ +++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            999999999999998555777776654  58999999999999642            5678888999999888 69999


Q ss_pred             eccC-CCCCHHHHHHHHHHHHHc
Q 028292          156 CSAK-TRVNVEQCFEELVLKILD  177 (211)
Q Consensus       156 ~Sa~-~~~~v~~~~~~i~~~~~~  177 (211)
                      +||+ ++.|++++|++|.+.+.+
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999998874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-33  Score=202.42  Aligned_cols=166  Identities=33%  Similarity=0.521  Sum_probs=142.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ....++|+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+||+||+.. ...+..++..+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            35679999999999999999999999888 45556666444 45577888899999999999887 77788889999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC-CHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQC  167 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~  167 (211)
                      |+|||++++++|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|. |++++
T Consensus       103 ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l  181 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI  181 (196)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence            99999999999999887 66666655545789999999999997777788899999999999999999999999 99999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |++|.+.+.++
T Consensus       182 ~~~l~~~i~~~  192 (196)
T 2atv_A          182 FYELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=7.8e-33  Score=196.56  Aligned_cols=161  Identities=21%  Similarity=0.365  Sum_probs=136.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.+||+|+|++|||||||+++|+++.+..+.++.+..+ ...+.+++..+.+.+|||||++.     ..+++++|++|+
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            467999999999999999999999999866777777443 56677888899999999999875     456788999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCC--CCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDK--ESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~--~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~  165 (211)
                      |||++++++|+.+.. |+..+.....  ..++|+++|+||+|+  ...+.+..+++.+++... +++++++||++|.|++
T Consensus        79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            999999999999887 5555544332  357999999999999  356678888888888887 6899999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      ++|++|.+.+.+.
T Consensus       158 ~lf~~l~~~~~~~  170 (178)
T 2iwr_A          158 RVFQEVAQKVVTL  170 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=4.9e-33  Score=201.39  Aligned_cols=169  Identities=27%  Similarity=0.482  Sum_probs=137.8

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ......++|+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            4556789999999999999999999998887 45556665443 456777888899999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cE
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LF  153 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~  153 (211)
                      ++|+|||++++.+|+.+...|+..+....  .++|+++|+||+|+..            .+.+..+++..++...++ ++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY  171 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            99999999999999998755777777654  4899999999999965            356778888899999887 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          154 LECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       154 ~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      +++||++|.|++++|++|.+.+.+..
T Consensus       172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          172 IECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhccc
Confidence            99999999999999999999987543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=203.65  Aligned_cols=168  Identities=32%  Similarity=0.590  Sum_probs=125.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ..+.++|+|+|++|||||||+++|++..+ ..+.++.+.. ....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  109 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL  109 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence            45689999999999999999999998887 4455555433 345677888999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhCC-cEEE
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREYGC-LFLE  155 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~  155 (211)
                      |+|||++++.+|+.+...|+..+....  .++|+++|+||+|+....            .+..+++..++...++ ++++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  187 (214)
T 2j1l_A          110 LLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE  187 (214)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence            999999999999998755777776654  679999999999996643            5677888899999997 9999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          156 CSAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       156 ~Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      +||++|.|++++|++|.+.+.+.+.
T Consensus       188 ~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          188 CSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999986643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.1e-32  Score=196.85  Aligned_cols=167  Identities=30%  Similarity=0.573  Sum_probs=143.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.++|+|+|++|+|||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            3579999999999999999999999887 45555655443 456678899999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEe
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLEC  156 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  156 (211)
                      +|||++++.+|+.+...|+..+....  .++|+++|+||+|+.+.            +.+..+++..++...++ +++++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence            99999999999998755777777654  48999999999998653            46778888889999997 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          157 SAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      ||++|.|++++|++|.+.+.+...
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred             cCCCccCHHHHHHHHHHHHhcccc
Confidence            999999999999999999976543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=3.5e-33  Score=198.75  Aligned_cols=168  Identities=35%  Similarity=0.660  Sum_probs=130.6

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ..+.++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            45679999999999999999999999887 5667788888888888777 566889999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HhCCcEEEeccCCCC
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKES-ERVVSKKEGIDFAR-EYGCLFLECSAKTRV  162 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  162 (211)
                      +|+|||++++.+++.+.. |+..+.....   ..++|+++|+||+|+.. .+.+..+++.+++. ..+++++++||++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            999999999999998877 5555554431   36799999999999953 34567788888887 456899999999999


Q ss_pred             CHHHHHHHHHHHHHcC
Q 028292          163 NVEQCFEELVLKILDT  178 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~  178 (211)
                      |++++|++|.+.+.++
T Consensus       164 gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQ  179 (182)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=3.3e-32  Score=197.15  Aligned_cols=164  Identities=34%  Similarity=0.600  Sum_probs=142.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...+||+|+|.+|||||||++++.+..+ ..+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            4679999999999999999999999888 455666666554 34677888899999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEe
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLEC  156 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  156 (211)
                      +|||++++.+|+.+...|...+....  .++|+++|+||+|+.+.            +.+..+++..++...++ +++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            99999999999998655887777654  58999999999999765            45778888899999888 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHc
Q 028292          157 SAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      ||++|.|+++++++|.+.+.+
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.9e-32  Score=198.52  Aligned_cols=163  Identities=37%  Similarity=0.629  Sum_probs=142.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeE-----------------------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK-----------------------------   60 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------   60 (211)
                      ...++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            4679999999999999999999999988 5677788878877777777655                             


Q ss_pred             --------EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           61 --------MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        61 --------~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                              +.+.||||||++.+...+..+++.+|++|+|||++++.+++.+.. |+..+....   ++|+++|+||+| .
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~---~~piilv~NK~D-~  159 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS---NYIIILVANKID-K  159 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS---CCEEEEEEECTT-C
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC---CCcEEEEEECCC-c
Confidence                    889999999999999999999999999999999999999998877 666665543   399999999999 5


Q ss_pred             CCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ..+.+..+++.+++...+++++++||+++.|+++++++|.+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            6667888899999999999999999999999999999999988753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=4.5e-32  Score=190.00  Aligned_cols=162  Identities=35%  Similarity=0.601  Sum_probs=139.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .++|+++|++|+|||||+++|.+..+ ..+.++.+. .....+.+++..+.+.+||+||+..+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            58999999999999999999999887 444455443 3355677788889999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++.+++.+.. |...+.......++|+++|+||+|+.+ +....+++.+++...+++++++||++|.|+++++++|
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999998877 666666655456899999999999866 4567788889999999999999999999999999999


Q ss_pred             HHHHHc
Q 028292          172 VLKILD  177 (211)
Q Consensus       172 ~~~~~~  177 (211)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.9e-33  Score=204.39  Aligned_cols=167  Identities=25%  Similarity=0.403  Sum_probs=111.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCcceeeeEEEEEEECCe--EEEEEEEeCCCcccccccccccccCc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVALGGK--KMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      ...++|+|+|++|||||||+++|++.  .+ ..+.++.+.++....+.+++.  .+.+.+|||||++.+...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            57799999999999999999999998  66 566777777777778888877  88999999999999999999999999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCC-CcccCHHHHHHHHHHhCCcEEEeccCC-C
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKES-ERVVSKKEGIDFAREYGCLFLECSAKT-R  161 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~  161 (211)
                      |++|+|||++++.+|+.+.. |+..+.....  ..++|+++|+||+|+.+ .+.+..+++.+++..++++++++||++ +
T Consensus        98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG  176 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred             cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence            99999999999999999887 7777776652  16899999999999987 777888999999999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 028292          162 VNVEQCFEELVLKILDT  178 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~  178 (211)
                      .|++++|++|.+.+.+.
T Consensus       177 ~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          177 KDADAPFLSIATTFYRN  193 (208)
T ss_dssp             ---CHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999988754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.6e-32  Score=196.81  Aligned_cols=166  Identities=33%  Similarity=0.567  Sum_probs=138.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...+||+|+|.+|||||||+++|++..+ ..+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            4678999999999999999999999888 445566655544 34677888899999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEe
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLEC  156 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  156 (211)
                      +|||++++.+|+.+...|...+....  .++|+++|+||+|+.+.            +.+..+++..++...++ +++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            99999999999998555777776654  58999999999999654            45677888889988888 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCC
Q 028292          157 SAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      ||++|.|+++++++|.+.+.+..
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999988653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.7e-33  Score=194.91  Aligned_cols=164  Identities=30%  Similarity=0.457  Sum_probs=137.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.++|+|+|++|+|||||+++|++..+ ..+.++.+.++ ...+..++..+.+.+|||||+..+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            469999999999999999999999887 45556655444 3445678888999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      |||++++.+++.+.. |...+... ....++|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++++
T Consensus        81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A           81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence            999999999988877 44444433 2235799999999999977777888888889999999999999999999999999


Q ss_pred             HHHHHHHc
Q 028292          170 ELVLKILD  177 (211)
Q Consensus       170 ~i~~~~~~  177 (211)
                      +|.+.+..
T Consensus       160 ~l~~~~~~  167 (172)
T 2erx_A          160 ELLNLEKR  167 (172)
T ss_dssp             HHHHTCCS
T ss_pred             HHHHHHhh
Confidence            99987654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=211.47  Aligned_cols=168  Identities=58%  Similarity=0.948  Sum_probs=139.5

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ..++.+||+|+|.+|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            346789999999999999999999999887 4556777778888888999999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++
T Consensus       109 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             EEECC-CCCSHHHHHHHH-HHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999887 777776554 468999999999999877777777788899999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |.+|.+.+.++
T Consensus       187 ~~~l~~~l~~~  197 (199)
T 3l0i_B          187 FMTMAAEIKKR  197 (199)
T ss_dssp             HHHHTTTTTTT
T ss_pred             HHHHHHHHHHh
Confidence            99998877643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=3.4e-33  Score=205.22  Aligned_cols=173  Identities=34%  Similarity=0.552  Sum_probs=150.3

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR   83 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (211)
                      ..+......+||+|+|.+|||||||+++++.+.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus         7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (221)
T 3gj0_A            7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI   86 (221)
T ss_dssp             CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred             ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence            4455667889999999999999999999877765 667788899999999999999999999999999999999999999


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      ++|++|+|||++++.+|+.+.. |+..+....  .++|+++|+||+|+.+....  .+...++...+++++++||++|.|
T Consensus        87 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g  161 (221)
T 3gj0_A           87 QAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN  161 (221)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHH-HHHHHHHHS--TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred             cCCEEEEEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999887 776666654  58999999999999654432  255567888899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCcc
Q 028292          164 VEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       164 v~~~~~~i~~~~~~~~~~~  182 (211)
                      ++++|.+|.+.+.......
T Consensus       162 i~~l~~~l~~~l~~~~~~~  180 (221)
T 3gj0_A          162 FEKPFLWLARKLIGDPNLE  180 (221)
T ss_dssp             TTHHHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHHHHHHhCcccc
Confidence            9999999999998876544

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=2.9e-32  Score=196.13  Aligned_cols=167  Identities=26%  Similarity=0.368  Sum_probs=135.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCC--CCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGAQG   87 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~   87 (211)
                      ...+||+++|++|||||||+++|++..  +....++.+.++....+.+++..+.+.+|||+|... +..++..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            456999999999999999999999643  333345566677777788899999999999999766 45566777888999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +++|||++++++|+.+.. |...+.......++|+++|+||+|+...+.+..++...++..++++++++||++|.||+++
T Consensus        84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            999999999999999887 5555554433468999999999999776777788888888888999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |++|.+.+...
T Consensus       163 f~~l~~~~~~~  173 (192)
T 2cjw_A          163 FEGIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=1.6e-32  Score=193.46  Aligned_cols=162  Identities=22%  Similarity=0.347  Sum_probs=128.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ..+.++|+|+|++|+|||||+++|.+..+..+.++.+...  ..+.++  ...+.+|||||++.+...+..+++++|++|
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            4567999999999999999999999998876777776443  344444  467999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHhCCcEEEeccCCCCCH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-----FAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|+|++++.+|.....++...+.... ..++|+++|+||+|+.+...  .++...     ++...+++++++||++|.|+
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGL  156 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence            99999999999988874544443222 46899999999999965432  222222     12234568999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      ++++++|.+.+.++
T Consensus       157 ~~l~~~l~~~i~~~  170 (171)
T 1upt_A          157 DEAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999998764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=3.5e-33  Score=198.89  Aligned_cols=164  Identities=31%  Similarity=0.647  Sum_probs=127.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.+||+|+|++|+|||||++++.+..+ ..+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            4579999999999999999999999887 445555554332 23445667788899999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----------cCHHHHHHHHHHhCC-cEEEecc
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV----------VSKKEGIDFAREYGC-LFLECSA  158 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  158 (211)
                      +|||++++.+|+.+...|...+....  .++|+++|+||+|+.+.+.          +..+++.+++..+++ +++++||
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999998855887777664  4899999999999866544          477888899999996 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHc
Q 028292          159 KTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~~~~  177 (211)
                      ++|.|++++|++|.+.+.+
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=3.1e-32  Score=197.77  Aligned_cols=162  Identities=30%  Similarity=0.565  Sum_probs=137.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.+||+|+|.+|||||||++++++..+ ..+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4679999999999999999999999888 44555554 445566777888899999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc------------cCHHHHHHHHHHhCC-cEEEe
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------VSKKEGIDFAREYGC-LFLEC  156 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~  156 (211)
                      +|||++++.+|+.+...|...+....  .++|+++|+||+|+.+...            +..+++..++...++ +++++
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            99999999999998755888777664  6899999999999865443            778888899999886 59999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 028292          157 SAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~  175 (211)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=5.2e-33  Score=200.42  Aligned_cols=168  Identities=22%  Similarity=0.219  Sum_probs=134.9

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CCCcceeeeEEEEE-EECCeEEEEEEEeCCCcccc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----------LSPTIGVDFKIKHV-ALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~   74 (211)
                      .......+||+|+|++|||||||++.+.+.....           +.++.+.++....+ .+++..+.+.+|||||++.+
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            3455688999999999999999997776644333           23455555544444 56778899999999999999


Q ss_pred             cccccccccCccEEEEEEECCC------hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTR------RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE  148 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  148 (211)
                      ...+..+++++|++|+|||+++      .++|+.+.. |+..+..  ...++|+++|+||+|+.+.  +..+++.+++..
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~--~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~  162 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGL--TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDP  162 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTC--CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCT
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhcc--ccCCCCEEEEEEchhcccc--cCHHHHHHHHHh
Confidence            9999999999999999999994      456666555 4444421  2478999999999998654  778888999999


Q ss_pred             hCC-cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          149 YGC-LFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       149 ~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      .++ +++++||++|.|++++|++|.+.+.++.
T Consensus       163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            999 9999999999999999999999988653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=2.8e-32  Score=196.95  Aligned_cols=172  Identities=13%  Similarity=0.223  Sum_probs=127.6

Q ss_pred             CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 028292            4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY   81 (211)
Q Consensus         4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (211)
                      ++...+....++|+|+|++|||||||+++|++..+ . .+.++.+....  .+.  ...+.+.||||||++.+...+..+
T Consensus         8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~   83 (199)
T 4bas_A            8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETY   83 (199)
T ss_dssp             --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGG
T ss_pred             cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHH
Confidence            34456777899999999999999999999999988 3 45777774433  232  345789999999999999999999


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcC------CCCCcEEEEEeCCCCCCCcc---cCHHHHHHHH-HHhCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST------NQDCIKLLVGNKVDKESERV---VSKKEGIDFA-REYGC  151 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~-~~~~~  151 (211)
                      ++++|++|+|||++++++|+.+..++...+.....      ..++|+++|+||+|+.....   +......... ...++
T Consensus        84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (199)
T 4bas_A           84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF  163 (199)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred             HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence            99999999999999999999988855544432110      13899999999999966532   1111111111 34667


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          152 LFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       152 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      +++++||++|.|++++|++|.+.+.+..
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.98  E-value=2.6e-31  Score=190.82  Aligned_cols=157  Identities=24%  Similarity=0.318  Sum_probs=126.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+++|++|||||||++++.+..+..+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++|+
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45689999999999999999999999887777777754  44556665  789999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------hCCcEEEecc
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE------------YGCLFLECSA  158 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  158 (211)
                      |||++++++|+.+.. |...+.......++|+++|+||+|+.+  .+..+++.+....            .+++++++||
T Consensus        97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999887 444443332246899999999999965  4556666555432            3468999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028292          159 KTRVNVEQCFEELVLK  174 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~  174 (211)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.98  E-value=1.2e-31  Score=193.90  Aligned_cols=157  Identities=20%  Similarity=0.296  Sum_probs=120.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+++|++|||||||++++.+..+..+.++.+.+.  ..+.+++  +.+.+|||||++.+...+..+++++|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            456899999999999999999999988866777777653  4555565  789999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----------------hCCcE
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-----------------YGCLF  153 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  153 (211)
                      |||++++++|+.+.. |+..+.......++|+++|+||+|+..  .+..+++.++...                 .++++
T Consensus        99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999888 444443332246899999999999965  4566677666542                 24579


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 028292          154 LECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       154 ~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.98  E-value=2e-32  Score=191.81  Aligned_cols=157  Identities=22%  Similarity=0.401  Sum_probs=121.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      +||+++|++|||||||+++++++.+..+.|+.+..  ...+..  ..+.+.+|||||++.+...+..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999998886666776633  333333  34679999999999999999999999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++++++|+.+..++..... .....++|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|+++++
T Consensus        77 ~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLA-EDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHh-chhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999988874444333 2224689999999999996542  222222211     1234579999999999999999


Q ss_pred             HHHHHHHHc
Q 028292          169 EELVLKILD  177 (211)
Q Consensus       169 ~~i~~~~~~  177 (211)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999988754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.98  E-value=4.7e-32  Score=194.38  Aligned_cols=164  Identities=23%  Similarity=0.361  Sum_probs=126.2

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      ....+.++|+|+|++|||||||+++|++..+ ..+.++.+.++..  +..  ..+.+.+||+||++.+...+..++.++|
T Consensus        17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (188)
T 1zd9_A           17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVS   92 (188)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence            3345789999999999999999999999888 4667777766543  322  3577999999999999999999999999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCC
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTR  161 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  161 (211)
                      ++|+|||++++++++.+..++...+.... ..++|+++|+||+|+....  ..++..+...     ..+++++++||++|
T Consensus        93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  169 (188)
T 1zd9_A           93 AIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEK  169 (188)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence            99999999999999998884444443222 4789999999999996542  2222222111     23457999999999


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 028292          162 VNVEQCFEELVLKILDT  178 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~  178 (211)
                      .|++++|++|.+.+.++
T Consensus       170 ~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          170 DNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             TTHHHHHHHHHHTCC--
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999877543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.8e-31  Score=190.17  Aligned_cols=163  Identities=23%  Similarity=0.340  Sum_probs=124.3

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (211)
                      +......+.++|+|+|.+|||||||+++|++..+..+.++.+....  .+.+++  +.+.+||+||++.+...+..++.+
T Consensus        13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~   88 (181)
T 2h17_A           13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTN   88 (181)
T ss_dssp             --------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred             CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence            3455566889999999999999999999999988666677775543  344444  789999999999999999999999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccC
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAK  159 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  159 (211)
                      +|++|+|||++++++|+.+..++....... ...++|+++|+||+|+...  ...++..+..     ...+++++++||+
T Consensus        89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  165 (181)
T 2h17_A           89 TEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCAL  165 (181)
T ss_dssp             CCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCC
Confidence            999999999999999999888454444322 2478999999999999653  2333433332     2234589999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028292          160 TRVNVEQCFEELVLK  174 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~  174 (211)
                      +|.|++++|++|.+.
T Consensus       166 ~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          166 TGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTBTHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHhh
Confidence            999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.4e-30  Score=186.16  Aligned_cols=161  Identities=24%  Similarity=0.353  Sum_probs=128.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+++|++|||||||++++++.....+.++.+..  ...+.++  .+.+.+|||||++.+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            57799999999999999999999988866667777744  3344444  4679999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  165 (211)
                      |+|++++.+|+.+..++..... .....++|+++|+||+|+.+...  .++..+...     ..+++++++||++|.|++
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLV-EERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHh-ChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999998874444443 32246899999999999965432  333332221     245689999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      +++++|.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=8.6e-32  Score=193.66  Aligned_cols=162  Identities=23%  Similarity=0.365  Sum_probs=120.1

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ...+.++|+|+|++|||||||+++++++.+..+.++.+  +....+...  .+.+.+|||||++.+...+..++.++|++
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            34577999999999999999999999888755555555  333334443  47799999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCC
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVN  163 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~  163 (211)
                      |+|||++++++|+.+..++..... .....++|+++|+||+|+.+..  ..++..+..     ...+++++++||++|.|
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g  177 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTG  177 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhc-ccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence            999999999999998874444433 2224689999999999996542  222222211     12345799999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 028292          164 VEQCFEELVLKILD  177 (211)
Q Consensus       164 v~~~~~~i~~~~~~  177 (211)
                      +++++++|.+.+.+
T Consensus       178 i~~l~~~l~~~i~~  191 (192)
T 2b6h_A          178 LYDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.4e-31  Score=189.09  Aligned_cols=166  Identities=22%  Similarity=0.325  Sum_probs=124.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+|+|++|||||||+++|+++.+..+.++.+...  ..+.+++  +.+.+|||||++.+...+..++.++|++|+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            467999999999999999999999888766666666443  3444444  789999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  165 (211)
                      |+|++++++|+.+.. |+..+.......++|+++|+||+|+.+.  ...+++.+...     ..+++++++||++|.|++
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            999999999999888 4444443322468999999999999653  23444443332     245689999999999999


Q ss_pred             HHHHHHHHHHHcCCCccc
Q 028292          166 QCFEELVLKILDTPSLLS  183 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~~~~  183 (211)
                      +++++|.+.+.......+
T Consensus       167 ~l~~~l~~~~~~~~~~~~  184 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLEHHH  184 (187)
T ss_dssp             HHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHHhhhhc
Confidence            999999999876655443

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=1.1e-31  Score=192.58  Aligned_cols=162  Identities=20%  Similarity=0.325  Sum_probs=127.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+|+|++|||||||++++.++.+..+.++.+..  ...+.++  .+.+.+|||||++.+...+..+++++|++|+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999988875566676643  3344444  4679999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF-----AREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |+|++++++++.+..++...+. .....++|+++|+||+|+.+...  .++..+.     +...+++++++||+++.|++
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLD-EDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHT-CSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHh-hhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999988874444443 22246899999999999965432  2222221     12234579999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 028292          166 QCFEELVLKILDTP  179 (211)
Q Consensus       166 ~~~~~i~~~~~~~~  179 (211)
                      +++++|.+.+.++.
T Consensus       173 ~l~~~l~~~i~~~~  186 (189)
T 2x77_A          173 EGMDWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=186.87  Aligned_cols=164  Identities=20%  Similarity=0.282  Sum_probs=125.6

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCC-C-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDT-F-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (211)
                      .....+.++|+|+|.+|||||||+++|++.. + ..+.++.+  +....+.+++  +.+.+|||||++.+...+..++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~   90 (190)
T 2h57_A           15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE   90 (190)
T ss_dssp             ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred             ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence            3445578999999999999999999999887 3 55666666  4444555554  679999999999999999999999


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEec
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECS  157 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S  157 (211)
                      +|++|+|||++++.+|+.+..++..... ....  .++|+++|+||+|+...  ...++..++..     ..+++++++|
T Consensus        91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  167 (190)
T 2h57_A           91 GQAIIFVIDSSDRLRMVVAKEELDTLLN-HPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASD  167 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHH-STTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHh-ChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEcc
Confidence            9999999999999999998874444443 3212  68999999999999653  34455555443     2356899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHc
Q 028292          158 AKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~~~~~  177 (211)
                      |++|.|+++++++|.+.+.+
T Consensus       168 a~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          168 AIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999988754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=5.9e-32  Score=192.78  Aligned_cols=161  Identities=25%  Similarity=0.349  Sum_probs=124.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+++|++|||||||++++.+..+..+.++.|..  ...+.++  .+.+.+|||||++.+...+..++.++|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            46799999999999999999999988776666777743  3344455  4679999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |||++++++|+.+..++...+.... ..++|+++|+||+|+.+...  .++..+..     ...+++++++||++|.|++
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           90 VIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999988774444433222 46899999999999965532  22332221     1234579999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      ++|++|.+.+.++
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=7e-30  Score=184.62  Aligned_cols=166  Identities=45%  Similarity=0.773  Sum_probs=144.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      +..++|+|+|++|||||||++++++..+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            4679999999999999999999999887 566678788888888899999999999999999999888888899999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|+|+++..+++.+.. |...+.... ..+.|+++++||+|+.+.+.+...++..++...++.++++||+++.|++++++
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~  160 (199)
T 2f9l_A           83 LVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  160 (199)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999988776 555554443 45789999999999977777778888999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028292          170 ELVLKILDT  178 (211)
Q Consensus       170 ~i~~~~~~~  178 (211)
                      +|.+.+.+.
T Consensus       161 ~l~~~~~~~  169 (199)
T 2f9l_A          161 NILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=2.5e-29  Score=180.65  Aligned_cols=167  Identities=46%  Similarity=0.792  Sum_probs=145.8

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +.+.+..++|+|+|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus        23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~  102 (191)
T 1oix_A           23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA  102 (191)
T ss_dssp             -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence            34456789999999999999999999999887 56778888888888899999999999999999998888888888999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      +++++|+|.++..+|+.+.. |...+.... ..+.|+++++||+|+.+.+.+...++..++...++.++++||+++.+++
T Consensus       103 ~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~  180 (191)
T 1oix_A          103 VGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE  180 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999888766 555554433 4578999999999997767777888999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028292          166 QCFEELVLKI  175 (211)
Q Consensus       166 ~~~~~i~~~~  175 (211)
                      +++++|.+.+
T Consensus       181 ~l~~~l~~~i  190 (191)
T 1oix_A          181 AAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=3.9e-31  Score=188.54  Aligned_cols=161  Identities=23%  Similarity=0.340  Sum_probs=123.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+|+|++|||||||+++++++.+..+.++.+...  ..+.+++  ..+.+||+||+..+...+..++.++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            578999999999999999999999888766667777443  3444444  779999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----hCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-----YGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~  165 (211)
                      |+|++++.+++.+.. |...+.......++|+++|+||+|+.+.  ...++..+....     .+++++++||++|.|++
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            999999999998887 4444433322478999999999998654  233343333221     23479999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      +++++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=2e-29  Score=195.54  Aligned_cols=165  Identities=29%  Similarity=0.566  Sum_probs=142.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...++|+++|.+|+|||||++++++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            4568999999999999999999998887 45556665444 456678889999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEe
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLEC  156 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  156 (211)
                      +|||++++.+|+.+...|...+....  .++|+++|+||+|+.+.            +.+..+++..++...++ +++++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            99999999999998755777777654  48999999999998543            56778889999999997 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028292          157 SAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ||++|.|++++|++|.+.+...
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999988753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=7.1e-31  Score=189.43  Aligned_cols=165  Identities=22%  Similarity=0.232  Sum_probs=119.4

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEEC-CeEEEEEEEeCCCcccccccc---
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALG-GKKMKLAIWDTAGQERFRTLT---   78 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---   78 (211)
                      ....+..+.+||+|+|++|||||||++++.+.....  ++.+.++  ......+. +..+.+.+|||+|++.+....   
T Consensus        12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             --------CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            345667789999999999999999999888754333  3333333  33333333 566889999999999987665   


Q ss_pred             cccccCccEEEEEEECCCh--hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------CcccCHHHHHHHHH--
Q 028292           79 SSYYRGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-------ERVVSKKEGIDFAR--  147 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~--  147 (211)
                      ..+++++|++|+|||++++  +++..+.. |+..+...  ..++|+++|+||+|+.+       .+.+..++..+++.  
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~  166 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG  166 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence            7899999999999999997  55555544 33333222  46899999999999854       33455556667777  


Q ss_pred             --HhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          148 --EYGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       148 --~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                        ..+++++++||++ .|++++|..|++.+
T Consensus       167 ~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          167 LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence              6678999999999 99999999999865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.2e-32  Score=198.52  Aligned_cols=162  Identities=30%  Similarity=0.586  Sum_probs=135.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.+||+|+|.+|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4679999999999999999999998877 44445554333 444566777788999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhCC-cEEEe
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREYGC-LFLEC  156 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  156 (211)
                      +|||++++.+|+.+...|+..+....  .++|+++|+||+|+.+..            .+..+++..++...++ +++++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            99999999999988754777776543  389999999999996543            4566677788888887 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 028292          157 SAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~  175 (211)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=1.9e-30  Score=185.43  Aligned_cols=164  Identities=21%  Similarity=0.374  Sum_probs=121.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCcceeeeEEEEEEE---CCeEEEEEEEeCCCcccccccccccccCcc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVAL---GGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (211)
                      .+||+|+|++|||||||+++|.+.  .+ ..+.++.+.++....+.+   ++..+.+.+|||+|++.+...+..++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            489999999999999999999985  34 446677776666555443   345678999999999999888899999999


Q ss_pred             EEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHhCCc----EEEecc
Q 028292           87 GIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS---KKEGIDFAREYGCL----FLECSA  158 (211)
Q Consensus        87 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa  158 (211)
                      ++++|||++++ .+|+.+.. |+..+....  .++|+++|+||+|+.+.+.+.   .+....++..++++    ++++||
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKP-WLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA  158 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHH-HHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred             EEEEEEeCCcchhHHHHHHH-HHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence            99999999998 47887776 666655443  579999999999986544332   23344555566776    999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHcCC
Q 028292          159 KTRV-NVEQCFEELVLKILDTP  179 (211)
Q Consensus       159 ~~~~-~v~~~~~~i~~~~~~~~  179 (211)
                      +++. +++++++.|.+.+.+..
T Consensus       159 ~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          159 TEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             TSCCHHHHHHHHHHHHHHHCC-
T ss_pred             ccCchhHHHHHHHHHHHHhccc
Confidence            9997 99999999999887644

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.8e-30  Score=199.88  Aligned_cols=161  Identities=21%  Similarity=0.351  Sum_probs=121.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.++|+|+|++|||||||+++|.+..+....++.+..+.  .+..  ..+.+.||||||++.+..++..+++.+|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4668999999999999999999999887444455554333  3333  34679999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~  165 (211)
                      |||++++.+|..+..++...+.... ..++|+++|+||+|+.+...  .++......     ..+++++++||++|.||+
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            9999999999998886666655433 56899999999999965432  222222211     124579999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      ++|++|.+.+.++
T Consensus       316 el~~~l~~~l~~~  328 (329)
T 3o47_A          316 EGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=8.9e-30  Score=186.00  Aligned_cols=162  Identities=18%  Similarity=0.233  Sum_probs=117.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCccEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFRT-LTSSYYRGAQGI   88 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~   88 (211)
                      .+.++|+|+|++|||||||+++|++..+....++.+..+..  +.+++. .+.+.+|||||+..+.. ++..+++++|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            45789999999999999999999998885544554444333  555544 57899999999998887 788889999999


Q ss_pred             EEEEECCChh-cHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH-----------------
Q 028292           89 IMVYDVTRRD-TFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERVVS--KKEGIDFAR-----------------  147 (211)
Q Consensus        89 ilv~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~-----------------  147 (211)
                      |+|||+++.. ++.....+|...+... ....++|+++|+||+|+.......  .+.+.+...                 
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~  162 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS  162 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence            9999999864 5666666566665542 224579999999999996654321  111111111                 


Q ss_pred             ----------------Hh--CCcEEEeccCCC------CCHHHHHHHHHHH
Q 028292          148 ----------------EY--GCLFLECSAKTR------VNVEQCFEELVLK  174 (211)
Q Consensus       148 ----------------~~--~~~~~~~Sa~~~------~~v~~~~~~i~~~  174 (211)
                                      ..  +++|+++||++|      .||+++|++|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                            11  567999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=190.25  Aligned_cols=167  Identities=23%  Similarity=0.299  Sum_probs=121.9

Q ss_pred             ccccCeeEEEEEEcCC---------CCcHHHHHHHHhhC---CC-CCCCCcc-eeeeEEEE--------------EEECC
Q 028292            7 QQEFDYLFKLLLIGDS---------GVGKSTLLLSFTSD---TF-EELSPTI-GVDFKIKH--------------VALGG   58 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~---------~~GKstli~~l~~~---~~-~~~~~~~-~~~~~~~~--------------~~~~~   58 (211)
                      .....+.+||+|+|.+         |||||||+++|++.   .+ ..+.++. +.++....              ..+++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3455678999999999         99999999999984   44 3444443 22222111              12456


Q ss_pred             eEEEEEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEEC
Q 028292           59 KKMKLAIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIIMVYDV   94 (211)
Q Consensus        59 ~~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~ilv~d~   94 (211)
                      ..+.+.|||                       ++|++.+..++..++.                     ++|++|+|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            778899999                       6677777777777777                     79999999999


Q ss_pred             CCh--hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCcEEEeccCCCCCHHHHHHHH
Q 028292           95 TRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        95 ~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      +++  .+|+.+.. |+..+.......++|+++|+||+|+.+.+.+  +++..++.. .+++++++||++|.|++++|++|
T Consensus       173 t~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          173 SRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             BC----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence            998  99999887 6666654422467999999999999655444  566677766 47899999999999999999999


Q ss_pred             HHHHH
Q 028292          172 VLKIL  176 (211)
Q Consensus       172 ~~~~~  176 (211)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=1.3e-27  Score=169.48  Aligned_cols=160  Identities=21%  Similarity=0.239  Sum_probs=119.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ..+.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++.  .+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            34679999999999999999999999887 344455554555555666664  477999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-------C--CcEEEeccC
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-------G--CLFLECSAK  159 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~  159 (211)
                      |+|+|++++........ + ..+.    ..++|+++|+||+|+.+..   .++........       +  ++++++||+
T Consensus        83 i~v~d~~~~~~~~~~~~-l-~~~~----~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVEA-I-NHAK----AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEEEETTCCCCHHHHHH-H-HHHG----GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEEEECCCCCcHHHHHH-H-HHHH----hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            99999988543332221 2 1111    3578999999999996532   22333222222       2  489999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCC
Q 028292          160 TRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      +|.|+++++++|.+.+...+.
T Consensus       154 ~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHhhhhhcc
Confidence            999999999999998876544

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.96  E-value=1.6e-28  Score=176.72  Aligned_cols=164  Identities=16%  Similarity=0.187  Sum_probs=115.6

Q ss_pred             CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------cc
Q 028292            4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QE   72 (211)
Q Consensus         4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~   72 (211)
                      .+.+.+....++|+|+|++|||||||+++|++..+ ..+.++.+.+.......+++   .+.+|||||          ++
T Consensus        14 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~   90 (195)
T 1svi_A           14 KPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSERE   90 (195)
T ss_dssp             SGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHH
T ss_pred             ChhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHH
Confidence            34455666889999999999999999999999875 56667777666666555544   589999999          66


Q ss_pred             cccccccccccCc---cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HH
Q 028292           73 RFRTLTSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK--KEGID-FA  146 (211)
Q Consensus        73 ~~~~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~  146 (211)
                      .+...+..++..+   |++++|+|++++.++....  +...+.    ..++|+++|+||+|+.+.+.+..  +++.+ +.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~  164 (195)
T 1svi_A           91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLK----YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChHHHHHHHHHHHHHHc
Confidence            6666677777666   9999999999988776642  233333    26789999999999976554332  22222 22


Q ss_pred             HHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          147 REYGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       147 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      ...+++++++||++|.|+++++++|.+.+.
T Consensus       165 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          165 IDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            234579999999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.8e-28  Score=172.15  Aligned_cols=152  Identities=18%  Similarity=0.236  Sum_probs=111.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR--   83 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   83 (211)
                      .++|+++|++|||||||+++|.+..+ ....++.+.+.....+.+++  ..+.+|||||+..+.      .+...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998765 33333333344444555554  578999999987764      23344554  


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      ++|++++|+|+++.+..   .. |...+..    .++|+++|+||+|+...+.+.. +...++..++++++++||++|.|
T Consensus        81 ~~~~~i~v~D~~~~~~~---~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~  151 (165)
T 2wji_A           81 KPDLVVNIVDATALERN---LY-LTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG  151 (165)
T ss_dssp             CCSEEEEEEETTCHHHH---HH-HHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred             CCCEEEEEecCCchhHh---HH-HHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence            79999999999986433   23 4444432    4799999999999854433332 35677788899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028292          164 VEQCFEELVLKI  175 (211)
Q Consensus       164 v~~~~~~i~~~~  175 (211)
                      ++++|++|.+.+
T Consensus       152 v~~l~~~l~~~~  163 (165)
T 2wji_A          152 IEELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.96  E-value=5.4e-28  Score=185.54  Aligned_cols=178  Identities=16%  Similarity=0.109  Sum_probs=137.4

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCccccc----------
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFR----------   75 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~----------   75 (211)
                      .++....-.|+++|.+|||||||+|+|++.++....+..+++........... ..++.||||||.....          
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence            34556778999999999999999999999988666666666555444433333 5789999999985543          


Q ss_pred             ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcE
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLF  153 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~  153 (211)
                      ..+..++..+|++++|+|++++.++.+... |...+..    .++|+++|+||+|+........+....+...++  .++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence            455667889999999999999888877554 4555553    578999999999997455555666777777775  789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHcCCCcccCCCCCc
Q 028292          154 LECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGV  189 (211)
Q Consensus       154 ~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~  189 (211)
                      +++||++|.|+++++++|.+.+.+....++.+....
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td  194 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMITD  194 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccC
Confidence            999999999999999999999988877776654433

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=6e-28  Score=178.05  Aligned_cols=165  Identities=18%  Similarity=0.066  Sum_probs=114.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------RTLTSS   80 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   80 (211)
                      .+.++|+|+|.+|||||||+++|++..+. ...+....+.....+...+  ..+.||||||....         ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            46799999999999999999999988763 2222222223333333333  57999999997321         112233


Q ss_pred             cccCccEEEEEEECCChhcHHHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHhC--CcEE
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLA-DIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK---EGIDFAREYG--CLFL  154 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~  154 (211)
                      ++..+|++|+|||++++.+|.... ..|...+...  ..++|+++|+||+|+.+.+.+...   ....++...+  ++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            467889999999999998775221 1133333322  248999999999999776666544   4556666666  8999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          155 ECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      ++||++|.|++++|++|.+.+.+.+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=3.8e-28  Score=186.40  Aligned_cols=161  Identities=25%  Similarity=0.388  Sum_probs=126.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-----RTLTSSYY   82 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   82 (211)
                      ..+||+++|.+|||||||+++++++..    ..+.+|.+..+.  .+.+.+ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            358999999999999999999998743    234455554443  344444 678999999999888     67888889


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCC--Ccc----cCHHHHHHHHHHhC---Cc
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKES--ERV----VSKKEGIDFAREYG---CL  152 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~  152 (211)
                      +++|++|+|||++++++|+.+.. |...+... ....++|+++|+||+|+.+  .+.    +..+++.+++..++   ++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~  157 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI  157 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred             ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence            99999999999999999998876 54444322 1146899999999999976  443    55677888888887   79


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          153 FLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       153 ~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      ++++||++ .++.++|..+++.+..
T Consensus       158 ~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          158 GFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEEeeecC-ChHHHHHHHHHHHHcC
Confidence            99999999 8999999998876543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=5.4e-28  Score=173.14  Aligned_cols=158  Identities=24%  Similarity=0.302  Sum_probs=118.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG-----------QERFRTLTSSY   81 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~   81 (211)
                      ++|+|+|++|||||||+++|++..+ ..+.+  +.+.....+.+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999887 33333  333444444443    589999999           55666677777


Q ss_pred             ccC-ccEEEEEEECCChhcHHHHHHHHHHH--------HHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCc
Q 028292           82 YRG-AQGIIMVYDVTRRDTFTNLADIWAKE--------IDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCL  152 (211)
Q Consensus        82 ~~~-~d~~ilv~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                      ++. ++++++|+++.+..+++.+...|...        +.......++|+++|+||+|+....   .++..+++..++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 78777888888888887774445532        2122224689999999999986654   55677788888864


Q ss_pred             -------EEEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          153 -------FLECSAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       153 -------~~~~Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                             ++++||++|.|++++|++|.+.+.+.+.
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   6999999999999999999999876543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=1e-27  Score=167.16  Aligned_cols=149  Identities=18%  Similarity=0.178  Sum_probs=107.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRG   84 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   84 (211)
                      +||+++|++|+|||||++++.+..+....  +....+.....+...+.  .+.+|||||...       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999998753222  33333445555555554  688999999876       33455667899


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCC
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVN  163 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  163 (211)
                      +|++|+|+|++++.+...  .++...+..    .++|+++|+||+|+.+..    +++.++. ..++ +++++||++|.|
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence            999999999998755432  223333332    568999999999986542    2233344 5677 899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028292          164 VEQCFEELVLKI  175 (211)
Q Consensus       164 v~~~~~~i~~~~  175 (211)
                      ++++|++|.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=5.2e-27  Score=168.58  Aligned_cols=165  Identities=18%  Similarity=0.202  Sum_probs=121.6

Q ss_pred             CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccc
Q 028292            4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QER   73 (211)
Q Consensus         4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~   73 (211)
                      .+.+.+....++|+|+|++|||||||+++|++.....+.++.+.+........+.   .+.+|||||          +..
T Consensus        14 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~   90 (195)
T 3pqc_A           14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERML   90 (195)
T ss_dssp             STTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHH
T ss_pred             ChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHH
Confidence            3445556678999999999999999999999988767777777766655554443   478999999          555


Q ss_pred             ccccccccccCc---cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--ccCHHHHHHHHHH
Q 028292           74 FRTLTSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVSKKEGIDFARE  148 (211)
Q Consensus        74 ~~~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~  148 (211)
                      +...+..++..+   |++++|+|.++..+.....  +...+.    ..++|+++|+||+|+.+..  ....++...++..
T Consensus        91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~  164 (195)
T 3pqc_A           91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMK----SLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK  164 (195)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence            666666666555   9999999998875443321  222333    2379999999999986543  2333455555555


Q ss_pred             hC-CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          149 YG-CLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       149 ~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      .+ ++++++||++|.|++++|++|.+.+.+
T Consensus       165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            34 699999999999999999999998754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=4.7e-27  Score=168.05  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=118.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR-   83 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   83 (211)
                      +.++|+++|++|||||||+++|++..+ ....++.+.+.....+.+++  ..+.+|||||+..+.      ..+..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            569999999999999999999998765 33334444445555555554  678999999988764      33445553 


Q ss_pred             -CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292           84 -GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV  162 (211)
Q Consensus        84 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (211)
                       .+|++++|+|.++.   +.... |...+.    ..++|+++|+||+|+...+.+. .+..+++..++++++++||+++.
T Consensus        84 ~~~~~~i~v~d~~~~---~~~~~-~~~~~~----~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL---ERNLY-LTLQLM----EMGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HCCSEEEEEEEGGGH---HHHHH-HHHHHH----TTTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             cCCCEEEEEecchhH---HHHHH-HHHHHH----hcCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence             58999999999864   44444 444443    3578999999999985443333 34567788889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028292          163 NVEQCFEELVLKILDTP  179 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~  179 (211)
                      |++++|++|.+.+.+..
T Consensus       155 ~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          155 GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999987765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=3.3e-27  Score=176.82  Aligned_cols=157  Identities=18%  Similarity=0.176  Sum_probs=117.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc------cccc--
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT------SSYY--   82 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~--   82 (211)
                      .+.++|+|+|++|||||||+++|++..+. ....+|.+.......+......+.+|||||...+...+      ..++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            46799999999999999999999987762 22223444444444443334689999999987765432      4444  


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV  162 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (211)
                      ..+|++|+|+|+++.++...    |...+.    ..++|+++|+||+|+...+.+.. +...++..++++++++||++|.
T Consensus        82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~----~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSLY----LLLEIL----EMEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHHH----HHHHHH----TTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred             cCCCEEEEEeCCCchhhHHH----HHHHHH----hcCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence            58999999999998765432    333333    35799999999999855444332 3567888899999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 028292          163 NVEQCFEELVLKILD  177 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~  177 (211)
                      |+++++++|.+.+..
T Consensus       153 gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          153 GLEELKEKIVEYAQK  167 (258)
T ss_dssp             THHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999998763

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=1.9e-27  Score=195.18  Aligned_cols=166  Identities=23%  Similarity=0.283  Sum_probs=126.4

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEE------EEE--CCeEEEEEEEeCCCccccccccc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKH------VAL--GGKKMKLAIWDTAGQERFRTLTS   79 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~   79 (211)
                      .....+||+++|.+|||||||++++++..+ ..+.++.+.++....      +.+  ++..+.+.+||+||++.+...+.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            356789999999999999999999999887 566677776655432      112  33457899999999999999999


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK  159 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (211)
                      .+++++|++|+|+|+++.+..   .. |...+..+.  .++|+++|+||+|+.+.+.+..++...++...+++++++||+
T Consensus       117 ~~l~~~d~ii~V~D~s~~~~~---~~-~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~  190 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDSNK---HY-WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCK  190 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGGGH---HH-HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-
T ss_pred             HHccCCcEEEEEEeCCCchhH---HH-HHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecC
Confidence            999999999999999876443   33 677776664  479999999999998888888888888888889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCC
Q 028292          160 TRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      +|.|+++++.+|.+.+.+...
T Consensus       191 ~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          191 NGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             ----CTTHHHHHHHHHTCTTS
T ss_pred             cccCHHHHHHHHHHHHhcccc
Confidence            999999999999999987655

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=3.7e-28  Score=185.20  Aligned_cols=156  Identities=19%  Similarity=0.237  Sum_probs=118.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc---cccccccCccE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT---LTSSYYRGAQG   87 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~   87 (211)
                      ||+++|+.|||||||++++.+.....    ..+|.|.++..    ++ ..+.++||||+|++++..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654432    45666665543    22 347899999999999964   35788999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHHH----hCCcEEE
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESE-------RVVSKKEGIDFARE----YGCLFLE  155 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~  155 (211)
                      +|+|||++++  +.....+|...+... ...+++|+++++||+|+.+.       +.+..+++.+++..    .++.|++
T Consensus        76 ~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e  153 (331)
T 3r7w_B           76 LVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL  153 (331)
T ss_dssp             EEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred             EEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence            9999999998  333333354433321 11468999999999999764       34666667777775    6789999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHcC
Q 028292          156 CSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       156 ~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      +||++ .+|.+.|..+++.+..+
T Consensus       154 TSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          154 TSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             eccCC-CcHHHHHHHHHHHHHhh
Confidence            99998 59999999999877654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=2.1e-27  Score=167.76  Aligned_cols=153  Identities=21%  Similarity=0.189  Sum_probs=110.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCC--CCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY   81 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   81 (211)
                      ..++|+++|.+|||||||+++|.+......  .+..+.++....+.+++.  .+.+|||||...+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            457999999999999999999998765222  233333455566667664  4789999997653211        1135


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      ++++|++++|+|++++.+++.. . |...+.... ..++|+++|+||+|+.+...       .++...+.+++++||++|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~~-~-~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDPA-E-IWPEFIARL-PAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTG  150 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHH-H-HCHHHHHHS-CTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTC
T ss_pred             HHhCCEEEEEEECCCCCCHHHH-H-HHHHHHHhc-ccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCC
Confidence            7899999999999999887643 3 555555443 45799999999999843211       011224678999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028292          162 VNVEQCFEELVLKIL  176 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~  176 (211)
                      .|++++|++|.+.+.
T Consensus       151 ~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          151 EGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TTHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999988764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=5.7e-27  Score=176.49  Aligned_cols=155  Identities=17%  Similarity=0.161  Sum_probs=116.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR--   83 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   83 (211)
                      +.++|+++|++|||||||+++|++... .....+|.++......+.. ...+.+|||||...+.      .....++.  
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            468999999999999999999998764 2233346666556666665 6679999999987765      34455554  


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (211)
                      ++|++|+|+|+++.+++.   . |...+.    ..++|+++|+||+|+...+.+. .+...+...++++++++||++|.|
T Consensus        80 ~~d~vi~V~D~t~~e~~~---~-~~~~l~----~~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A           80 RADSILNVVDATNLERNL---Y-LTTQLI----ETGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHH---H-HHHHHH----HTCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             CCCEEEEEecCCchHhHH---H-HHHHHH----hcCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence            699999999999865443   2 333333    2579999999999985443333 345677788899999999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 028292          164 VEQCFEELVLKILD  177 (211)
Q Consensus       164 v~~~~~~i~~~~~~  177 (211)
                      ++++|++|.+.+..
T Consensus       151 i~el~~~i~~~~~~  164 (272)
T 3b1v_A          151 VDQVVKKAAHTTTS  164 (272)
T ss_dssp             HHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999886543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.94  E-value=1.3e-26  Score=170.12  Aligned_cols=169  Identities=17%  Similarity=0.078  Sum_probs=117.7

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCc----------c
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQ----------E   72 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~   72 (211)
                      +.+.+....++|+|+|.+|+|||||+++|++... .......+++.......+. .....+.||||||.          +
T Consensus        21 ~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~  100 (223)
T 4dhe_A           21 LRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKA  100 (223)
T ss_dssp             GGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHH
T ss_pred             hhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHH
Confidence            3445556789999999999999999999999873 4555666665555555554 44467899999994          2


Q ss_pred             cccccccccccC---ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH
Q 028292           73 RFRTLTSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAR  147 (211)
Q Consensus        73 ~~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~  147 (211)
                      .+...+..++..   +|++++|+|+++..+...  ..+...+.    ..++|+++|+||+|+.......  .++..+...
T Consensus       101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~  174 (223)
T 4dhe_A          101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFA----PTGKPIHSLLTKCDKLTRQESINALRATQKSLD  174 (223)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHG----GGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHH----hcCCCEEEEEeccccCChhhHHHHHHHHHHHHH
Confidence            334444455544   789999999998644322  22444444    3578999999999986543321  122223333


Q ss_pred             H-------hCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          148 E-------YGCLFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       148 ~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      .       .+.+++++||++|.|+++++++|.+.+....
T Consensus       175 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          175 AYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            3       4568999999999999999999999886543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=5.6e-26  Score=173.53  Aligned_cols=166  Identities=20%  Similarity=0.202  Sum_probs=118.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYY   82 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   82 (211)
                      .+..+|+++|.+|||||||+|+|++.++....+.++++.......+.....++.||||||...        +......++
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            456789999999999999999999988754444444433332222223356899999999765        344556678


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hC-CcEEEeccCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YG-CLFLECSAKT  160 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~  160 (211)
                      +.+|++++|+|++++.+...  .++...+....  .++|+++|+||+|+......    ....... .+ .+++++||++
T Consensus        85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~--~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPED--ELVARALKPLV--GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT--TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTC
T ss_pred             hcCCEEEEEEECCCCCChHH--HHHHHHHHhhc--CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCC
Confidence            99999999999998755543  32444444332  47999999999998654330    2222232 23 4789999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcccC
Q 028292          161 RVNVEQCFEELVLKILDTPSLLSE  184 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~~~~~~~~  184 (211)
                      |.|+++++++|.+.+.+....+++
T Consensus       157 g~gv~~l~~~l~~~l~~~~~~y~~  180 (301)
T 1wf3_A          157 ERQVAELKADLLALMPEGPFFYPE  180 (301)
T ss_dssp             HHHHHHHHHHHHTTCCBCCCSSCT
T ss_pred             CCCHHHHHHHHHHhcccCCCCCCc
Confidence            999999999999988776665544

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=7.7e-26  Score=169.13  Aligned_cols=150  Identities=20%  Similarity=0.223  Sum_probs=111.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT----------LTSSYY   82 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   82 (211)
                      .+|+++|.+|||||||+|+|++... ....+..+.+.....+.+.+.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998865 223344444455555555554  789999999876653          445556


Q ss_pred             --cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292           83 --RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus        83 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                        .++|++|+|+|+++.+++..+.    ..+.    ..++|+++|+||+|+...+.+.. ....+...++++++++||++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~  150 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLT----SQLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHK  150 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHH----HHHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGG
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHH----HHHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCC
Confidence              8899999999999975554432    2222    45899999999999854333222 23456777899999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVLK  174 (211)
Q Consensus       161 ~~~v~~~~~~i~~~  174 (211)
                      |.|+++++++|.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999887

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=2.3e-25  Score=179.39  Aligned_cols=156  Identities=17%  Similarity=0.083  Sum_probs=99.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEE--EEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--KHVALGGKKMKLAIWDTAGQERFRTLT--------SSY   81 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   81 (211)
                      ..++|+++|.+|+|||||+|+|++.......+..+++...  ..+.+++  +.+.||||||...+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            4589999999999999999999988654444444444433  4455555  579999999987655332        346


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      +.++|++|+|+|++++.+++.+.. +..++...   .++|+++|+||+|+.+......   ..+......+++++||++|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg  382 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALNG  382 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTT
T ss_pred             cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCC
Confidence            789999999999999988754333 33333332   2799999999999976654422   2233332378999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028292          162 VNVEQCFEELVLKIL  176 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~  176 (211)
                      .|+++++++|.+.+.
T Consensus       383 ~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          383 DGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BSHHHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999987

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=3.4e-26  Score=167.40  Aligned_cols=150  Identities=19%  Similarity=0.263  Sum_probs=105.6

Q ss_pred             ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 028292            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS   80 (211)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (211)
                      +......+.++|+|+|++|+|||||+++|.+..+..    +.++.+..+         ....+.+|||||++.+...+..
T Consensus         4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~   74 (218)
T 1nrj_B            4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD   74 (218)
T ss_dssp             ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred             CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence            334445678999999999999999999999987633    333333222         3456899999999999888888


Q ss_pred             cccC----ccEEEEEEECC-ChhcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHH
Q 028292           81 YYRG----AQGIIMVYDVT-RRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVS------KKEGIDFAR  147 (211)
Q Consensus        81 ~~~~----~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~  147 (211)
                      ++..    +|++|+|+|++ ++.+|.....++...+....  ...++|+++|+||+|+.....+.      .+++..++.
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~  154 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE  154 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence            8877    89999999999 88899888875544443321  24689999999999997766544      455667777


Q ss_pred             HhCCcEEEeccCCCCC
Q 028292          148 EYGCLFLECSAKTRVN  163 (211)
Q Consensus       148 ~~~~~~~~~Sa~~~~~  163 (211)
                      ..++.++++||+++.+
T Consensus       155 ~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          155 RRKKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHC--------
T ss_pred             HHhccccccccccccc
Confidence            7788999999998875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=5.1e-25  Score=166.34  Aligned_cols=158  Identities=19%  Similarity=0.144  Sum_probs=115.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--   82 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   82 (211)
                      +.++|+++|++|||||||+++|++..+ ....+..+.+.....+...+.  .+.+|||||...+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            358999999999999999999998876 223344444444445555554  589999999877665      444454  


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV  162 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  162 (211)
                      .++|++|+|+|+++.+.   ...++.....    ...+|+++|+||+|+.+.+.+... ...+...++++++++||++|.
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~  151 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFE----MEVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGE  151 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHH----TTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHh----cCCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence            68999999999998632   2222332222    223999999999998543333322 566778889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028292          163 NVEQCFEELVLKILDTP  179 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~  179 (211)
                      |++++++++.+.+....
T Consensus       152 gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          152 GVEELKRMIALMAEGKV  168 (271)
T ss_dssp             THHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999999987654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=3e-26  Score=173.18  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=111.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeEEEEEEEeCCCccccccc----------cc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKKMKLAIWDTAGQERFRTL----------TS   79 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~   79 (211)
                      +.++|+++|.+|||||||+|+|++..+ ......|.+.  ....+...+  ..+.+|||||...+...          +.
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence            358999999999999999999998875 2223333333  333444443  46889999998776521          22


Q ss_pred             ccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292           80 SYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus        80 ~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      .++  .++|++|+|+|+++.+.+...    ...+..    .++|+++|+||+|+.+.+.+.. ....+...++++++++|
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~S  149 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYL----TLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLV  149 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECC
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHH----HHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEE
Confidence            222  689999999999986554433    222322    3799999999999854333221 24567778899999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcC
Q 028292          158 AKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~~~~~~  178 (211)
                      |++|.|+++++++|.+.+...
T Consensus       150 A~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          150 STRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             CGGGHHHHHHHHHHHTCCCCC
T ss_pred             cCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999998876544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=8.8e-26  Score=181.02  Aligned_cols=162  Identities=18%  Similarity=0.134  Sum_probs=115.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQE----------RFRTLT   78 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   78 (211)
                      +..++|+++|.+|||||||+|+|++.......+..+++..  ...+.+++.  .+.||||||+.          .+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            4679999999999999999999998876333333444333  334455554  48999999973          233222


Q ss_pred             c-ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-H----HhCCc
Q 028292           79 S-SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-R----EYGCL  152 (211)
Q Consensus        79 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~  152 (211)
                      . .++..+|++|+|+|++++.++++..  |...+.    ..++|+++|+||+|+.+.+....++..+.. .    ..+++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~  324 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP  324 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence            2 3678899999999999998887753  444443    367999999999999766554443333222 2    23679


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          153 FLECSAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       153 ~~~~Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      ++++||++|.|++++|+.+.+.+.+...
T Consensus       325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~~  352 (436)
T 2hjg_A          325 ILFMSALTKKRIHTLMPAIIKASENHSL  352 (436)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998876443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=2.3e-25  Score=179.54  Aligned_cols=164  Identities=20%  Similarity=0.156  Sum_probs=120.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAG----------QERFRTL   77 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   77 (211)
                      ....++|+++|.+|+|||||+++|++.......+..++  +.....+..++.  .+.||||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            35679999999999999999999998764222333333  333344555554  689999999          4555544


Q ss_pred             cc-ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-----CC
Q 028292           78 TS-SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-----GC  151 (211)
Q Consensus        78 ~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~  151 (211)
                      .. .++..+|++|+|+|+++..+....  .|...+.    ..++|+++|+||+|+.+.+....++..+.+...     ++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  343 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA  343 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHH----HTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHH----HcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence            44 367889999999999986543332  2444444    367999999999999877777777777776665     57


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292          152 LFLECSAKTRVNVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       152 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  181 (211)
                      +++++||++|.|++++|.++.+.+.+....
T Consensus       344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          344 PILFMSALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             CEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999988765543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.92  E-value=2e-24  Score=165.13  Aligned_cols=168  Identities=20%  Similarity=0.126  Sum_probs=116.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTSSY   81 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   81 (211)
                      .+..+|+++|++|+|||||+|+|++..+....+..+++.......+.....++.+|||||..         .+.......
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            35568999999999999999999998764333333333322222222234578999999986         234455677


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKT  160 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (211)
                      +..+|++++|+|.++ -+  ....++...+.    ..+.|+++++||+|+........+.+.++...+++ .++++||++
T Consensus        86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             CCCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HhcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            899999999999977 22  22222333332    46799999999999865333233444455555666 699999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcccCC
Q 028292          161 RVNVEQCFEELVLKILDTPSLLSEG  185 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~~~~~~~~~  185 (211)
                      +.|++++++++...+.+....++++
T Consensus       159 g~~v~~l~~~i~~~l~~~~~~~~~~  183 (301)
T 1ega_A          159 GLNVDTIAAIVRKHLPEATHHFPED  183 (301)
T ss_dssp             TTTHHHHHHHHHTTCCBCCCSSCTT
T ss_pred             CCCHHHHHHHHHHhCCcCCCCCCcc
Confidence            9999999999999887766655443

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=8.7e-26  Score=179.05  Aligned_cols=162  Identities=17%  Similarity=0.153  Sum_probs=114.7

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcce--eeeEEEEEEECCeEEEEEEEeCCCccccccc------
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERFRTL------   77 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------   77 (211)
                      .+.+....++|+|+|+.|+|||||+++|++..+.......+  .+.....+.+.+.. .+.+|||||+..+...      
T Consensus        27 ~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~  105 (423)
T 3qq5_A           27 RLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVE  105 (423)
T ss_dssp             CC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHH
T ss_pred             ccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHH
Confidence            34456678999999999999999999999887633333333  34444555555443 7899999998877654      


Q ss_pred             -ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292           78 -TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC  156 (211)
Q Consensus        78 -~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                       ...++.++|++|+|+|+...+..   .. |...+..    .++|+++|+||+|+......  +...++...++++++++
T Consensus       106 ~~~~~l~~aD~vllVvD~~~~~~~---~~-~l~~l~~----~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v  175 (423)
T 3qq5_A          106 KARRVFYRADCGILVTDSAPTPYE---DD-VVNLFKE----MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV  175 (423)
T ss_dssp             HHHHHHTSCSEEEEECSSSCCHHH---HH-HHHHHHH----TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred             HHHHHHhcCCEEEEEEeCCChHHH---HH-HHHHHHh----cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence             23467899999999999333222   22 5555543    37999999999999766554  55566666778999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028292          157 SAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ||++|.|+++++++|.+.+.+.
T Consensus       176 SAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          176 SALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             SSCCTTSTTTHHHHHHHHSCCC
T ss_pred             ECCCCCCHHHHHHHHHHhhhhh
Confidence            9999999999999999998654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=2.8e-24  Score=166.38  Aligned_cols=160  Identities=21%  Similarity=0.223  Sum_probs=115.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---Ccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSYYR---GAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~d   86 (211)
                      +|+|+|.+|||||||+++|++... ....+....+.....+.+.+ ...+.+|||||...    +..+...+++   .+|
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            689999999999999999998764 11222222222233344443 24689999999532    3334444444   599


Q ss_pred             EEEEEEECCC---hhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCC
Q 028292           87 GIIMVYDVTR---RDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKT  160 (211)
Q Consensus        87 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  160 (211)
                      ++|+|+|+++   +.+++.+.. |...+..+.. ..++|+++|+||+|+....    +...++...+.  .+++++||++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             EEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            9999999998   778888776 6666666542 3589999999999985432    33455666665  6899999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCC
Q 028292          161 RVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~~~~  180 (211)
                      +.|+++++.+|.+.+.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          314 REGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SSTTHHHHHHHHHHHTSCCC
T ss_pred             CcCHHHHHHHHHHHHhhCcc
Confidence            99999999999999977654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.2e-23  Score=164.54  Aligned_cols=161  Identities=21%  Similarity=0.187  Sum_probs=116.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSS   80 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~   80 (211)
                      ...++|+++|.+|||||||+++|++... ....+..........+...  ...+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4678999999999999999999998765 1111222222333333333  3568999999965432         11223


Q ss_pred             cccCccEEEEEEECCChh--cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292           81 YYRGAQGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSA  158 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (211)
                      ....+|++++|+|++++.  +++.... |...+....  .++|+++|+||+|+.....+  ++...++...+++++++||
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA  317 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA  317 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence            445689999999998876  6777666 555555443  28999999999999655433  4455666778899999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028292          159 KTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ++|+|+++++++|.+.+...
T Consensus       318 ~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          318 LKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999988654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=2.1e-24  Score=173.87  Aligned_cols=152  Identities=21%  Similarity=0.218  Sum_probs=112.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCCcc-cccc--------ccccc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAGQE-RFRT--------LTSSY   81 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~   81 (211)
                      .++|+++|.+|||||||+|+|++.......+..++  +.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            48999999999999999999998865333333333  44445556655  468999999987 5432        22356


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      +..+|++|+|+|++++.+++...  ++..+      .++|+++|+||+|+.+.  +..+++.++. ..+++++++||++|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg  389 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKG  389 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGT
T ss_pred             hhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCC
Confidence            78999999999999988876532  22222      37899999999999653  3444444432 24478999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028292          162 VNVEQCFEELVLKILD  177 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~  177 (211)
                      .|+++++++|.+.+..
T Consensus       390 ~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          390 EGLEKLEESIYRETQE  405 (482)
T ss_dssp             CCHHHHHHHHHHHTHH
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998663

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=3.3e-24  Score=172.04  Aligned_cols=153  Identities=24%  Similarity=0.277  Sum_probs=103.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSYY   82 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   82 (211)
                      .+|+++|.+|||||||+|+|++.......+++|.+  .....+.+.+.  .+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999988764445555554  34445555654  578999999653         234456678


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH-HHHHHHhCC-cEEEeccCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEG-IDFAREYGC-LFLECSAKT  160 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  160 (211)
                      +++|++|+|+|++++.++.+.  .+..++..    .++|+++|+||+|+...  . ..+. .++. ..++ .++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE--SLADFLRK----STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH--HHHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            999999999999887655431  12233332    46899999999997421  1 1222 3333 5676 789999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 028292          161 RVNVEQCFEELVLKILDT  178 (211)
Q Consensus       161 ~~~v~~~~~~i~~~~~~~  178 (211)
                      |.|++++++++.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=1.8e-24  Score=173.40  Aligned_cols=154  Identities=18%  Similarity=0.153  Sum_probs=105.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccCc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSYYRGA   85 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~   85 (211)
                      .+|+++|.+|||||||+|+|++.....+.+++|.+.......+......+.+|||||..        .+...+..++.++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a   83 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA   83 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            68999999999999999999998876677888887776666666666679999999975        4556677788999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNV  164 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v  164 (211)
                      |++|+|+|++++.++.+.  .+...+.    ..++|+++|+||+|+......    ..++. ..++ .++++||++|.|+
T Consensus        84 d~il~vvD~~~~~~~~d~--~~~~~l~----~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           84 DVIIFMVNGREGVTAADE--EVAKILY----RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             SEEEEEEETTTCSCHHHH--HHHHHHT----TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             CEEEEEEeCCCCCCHHHH--HHHHHHH----HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence            999999999988776542  1333333    468999999999998543211    11122 3455 7899999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028292          165 EQCFEELVLKILDT  178 (211)
Q Consensus       165 ~~~~~~i~~~~~~~  178 (211)
                      .++++++.+.+.+.
T Consensus       153 ~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          153 GDLLDAVAEHFKNI  166 (436)
T ss_dssp             HHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHhcCcc
Confidence            99999999988653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.90  E-value=2.7e-23  Score=154.17  Aligned_cols=169  Identities=14%  Similarity=0.152  Sum_probs=109.1

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCC--cceeeeEEEEEEECCeEEEEEEEeCCCcc-----------
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSP--TIGVDFKIKHVALGGKKMKLAIWDTAGQE-----------   72 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------   72 (211)
                      +.+....++|+|+|.+|||||||+++|++..+ ....+  +.+.......+.+.+  ..+.||||||..           
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~  100 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSK  100 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHH
Confidence            34456789999999999999999999999877 33333  233334444455555  468899999932           


Q ss_pred             cccccccccccCccEEEEEEECCChhcHHH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------HHHHHHH
Q 028292           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTN-LADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS------KKEGIDF  145 (211)
Q Consensus        73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~  145 (211)
                      .+...+...++++|++|+|+|+++...... ....+...+..   ....|+++|+||+|+.....+.      .+.+..+
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~---~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l  177 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE---RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL  177 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH---HHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh---hccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence            334445556678899999999976544221 11112222221   2346999999999986554433      2456778


Q ss_pred             HHHhCCcEEEeccCCC-----CCHHHHHHHHHHHHHcCCC
Q 028292          146 AREYGCLFLECSAKTR-----VNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       146 ~~~~~~~~~~~Sa~~~-----~~v~~~~~~i~~~~~~~~~  180 (211)
                      ...++..++.++...+     .++.+++..+.+.+.+...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g  217 (239)
T 3lxx_A          178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKE  217 (239)
T ss_dssp             HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence            8888888888877644     6899999999888876544

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=7.7e-23  Score=162.44  Aligned_cols=166  Identities=15%  Similarity=0.100  Sum_probs=114.7

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEE-------EE---------E---ECCeEEEEEEEeCC
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK-------HV---------A---LGGKKMKLAIWDTA   69 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-------~~---------~---~~~~~~~~~i~D~~   69 (211)
                      .....++|+++|++++|||||+++|++............+....       .+         .   .......+.|||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            44567999999999999999999999854422111111110000       00         0   01223689999999


Q ss_pred             CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH
Q 028292           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAR  147 (211)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~  147 (211)
                      |++.+...+...+..+|++|+|+|+++..++..... +...+...   ...|+++|+||+|+.+.....  .++..++..
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875655555 44444433   236899999999986543211  122222222


Q ss_pred             Hh---CCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          148 EY---GCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       148 ~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ..   +++++++||++|.|+++++++|.+.+...
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            22   56899999999999999999999877543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.89  E-value=9.1e-23  Score=167.92  Aligned_cols=160  Identities=25%  Similarity=0.305  Sum_probs=112.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCC--CC------------CCCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FE------------ELSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ   71 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~   71 (211)
                      ++..||+++|+.++|||||+++|+...  ..            ......|.++......+     ++..+.++||||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            356899999999999999999998632  10            01112333333322222     456789999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC  151 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      .+|...+...+..+|++|+|+|+++..+++.... |....     ..++|+++++||+|+....  ..+...++...+++
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~-----~~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~  153 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAM-----EMDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGI  153 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHH-----HTTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEeeeccCccccc--HHHHHHHHHHHhCC
Confidence            9999999999999999999999999877766655 44433     2578999999999996653  22334455556666


Q ss_pred             ---cEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          152 ---LFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       152 ---~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                         .++++||++|.|+++++++|.+.+...
T Consensus       154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          154 DATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             CcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence               499999999999999999999987654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=1.9e-22  Score=163.07  Aligned_cols=159  Identities=16%  Similarity=0.119  Sum_probs=112.7

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCC----CC----CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDT----FE----ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT   78 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   78 (211)
                      +....+.++|+++|++++|||||+++|++..    .+    +..+....+.....+.+++  ..+.||||||++.+...+
T Consensus        13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~   90 (482)
T 1wb1_A           13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAV   90 (482)
T ss_dssp             CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHH
T ss_pred             hhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHH
Confidence            4445578999999999999999999999876    21    1111111112222233333  679999999999998888


Q ss_pred             cccccCccEEEEEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHh----
Q 028292           79 SSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFAREY----  149 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----  149 (211)
                      ...+..+|++|+|+|+++.   ++++.+.     .+.    ..++|+++++||+|+.+...  ...+++.++....    
T Consensus        91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~-----~~~----~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~  161 (482)
T 1wb1_A           91 VSAADIIDLALIVVDAKEGPKTQTGEHML-----ILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK  161 (482)
T ss_dssp             HHHTTSCCEEEEEEETTTCSCHHHHHHHH-----HHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred             HHHHhhCCEEEEEEecCCCccHHHHHHHH-----HHH----HcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc
Confidence            8889999999999999983   4443322     222    24688899999999965321  1233444555554    


Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          150 GCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       150 ~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      +++++++||++|.|+++++++|.+.+.
T Consensus       162 ~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          162 NSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             GCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            578999999999999999999999876

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=9.5e-24  Score=169.36  Aligned_cols=154  Identities=16%  Similarity=0.200  Sum_probs=103.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY   81 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   81 (211)
                      ..++|+++|++|+|||||+|+|++.......  +..+.++....+.+++  ..+.+|||||...+...        ....
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4689999999999999999999987653333  3333333334455555  45799999997654432        2335


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR  161 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (211)
                      +.++|++++|+|.+++.++... . ++..+      ..+|+++|+||+|+.+...+.  ....+.  .+.+++++||++|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~~-~-i~~~l------~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg  368 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGDQ-E-IYEQV------KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK  368 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHHH-H-HHHHH------TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred             hhcCCEEEEEeccCCCCCHHHH-H-HHHhc------cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence            7899999999999998776552 2 33333      237999999999996654433  111111  3568999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC
Q 028292          162 VNVEQCFEELVLKILDTP  179 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~~  179 (211)
                      .|+++++++|.+.+....
T Consensus       369 ~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          369 QGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             BSHHHHHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHHHhccC
Confidence            999999999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=2.2e-22  Score=165.40  Aligned_cols=161  Identities=24%  Similarity=0.289  Sum_probs=114.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC------C------CCcceeeeE----EEEEEE-CCeEEEEEEEeCCC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE------L------SPTIGVDFK----IKHVAL-GGKKMKLAIWDTAG   70 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~------~------~~~~~~~~~----~~~~~~-~~~~~~~~i~D~~g   70 (211)
                      .++..||+++|+.++|||||+++|+...  ...      .      ....|.++.    ...+.. ++..+.++||||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            3567899999999999999999998632  110      0      011222221    111221 45668999999999


Q ss_pred             cccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC
Q 028292           71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG  150 (211)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  150 (211)
                      +.+|...+...+..+|++|+|+|+++..+++.... |....     ..++|+++++||+|+.....  .+...++...++
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~-----~~~ipiIvviNKiDl~~a~~--~~v~~el~~~lg  154 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAV-----EQDLVIIPVINKIDLPSADV--DRVKKQIEEVLG  154 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHH-----HTTCEEEEEEECTTSTTCCH--HHHHHHHHHTSC
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHH-----HCCCCEEEEEeccCccccCH--HHHHHHHHHhhC
Confidence            99999888888999999999999999888777665 44433     25789999999999965431  223344555556


Q ss_pred             C---cEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          151 C---LFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       151 ~---~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      +   .++++||++|.|+++++++|.+.+...
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            6   489999999999999999999987653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=1.4e-21  Score=155.49  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=105.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC----CCCCC--cceeeeEEEEEEE-------------C--C----eEEEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSP--TIGVDFKIKHVAL-------------G--G----KKMKLAI   65 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~----~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i   65 (211)
                      ...++|+++|+.++|||||+++|++...    .+..+  |....+....+..             .  +    ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            3569999999999999999999985432    22222  3332333333211             1  1    2378999


Q ss_pred             EeCCCcccccccccccccCccEEEEEEECCCh----hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCH
Q 028292           66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSK  139 (211)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~  139 (211)
                      |||||++.|...+...+..+|++|+|+|+++.    ++++.+.     .+..   ....|+++++||+|+.+...  ...
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-----ALEI---LGIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-----HHHH---TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-----HHHH---cCCCeEEEEEEccCCCCHHHHHHHH
Confidence            99999999888887888899999999999964    3443332     2222   23358999999999966543  234


Q ss_pred             HHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          140 KEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       140 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      +++.+++..   .+++++++||++|.|+++++++|.+.+..
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            555566554   35789999999999999999999987654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.88  E-value=4.3e-22  Score=159.50  Aligned_cols=157  Identities=18%  Similarity=0.201  Sum_probs=107.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCcceeeeEEEEEEEC
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALG   57 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~   57 (211)
                      .+....++|+++|++++|||||+++|+.....                              ......|.+.......+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            34457799999999999999999999654210                              011123444555454555


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhc---HH---HHHHHHHHHHHhhcCCCCCc-EEEEEeCCC
Q 028292           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDCI-KLLVGNKVD  130 (211)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D  130 (211)
                      .....+.||||||+++|...+...+.++|++|+|+|+++...   |+   .... ......    ..++| +++++||+|
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~~~v~~iIvviNK~D  166 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK----TAGVKHLIVLINKMD  166 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHH----HcCCCeEEEEeecCC
Confidence            556689999999999999888888999999999999998632   11   1111 111222    24566 899999999


Q ss_pred             CCCCc------ccCHHHHHHHHHHhC------CcEEEeccCCCCCHHHHHH
Q 028292          131 KESER------VVSKKEGIDFAREYG------CLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus       131 ~~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +....      ....++...+....+      ++++++||++|.|+.++.+
T Consensus       167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            85321      111233444444444      4799999999999999665

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=2e-22  Score=161.67  Aligned_cols=161  Identities=22%  Similarity=0.195  Sum_probs=110.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKKMKLAIWDTAGQERFRTLT----------   78 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------   78 (211)
                      ...++|+++|++|||||||+|+|++.......+..|++.  ....+.+++.  .+.+|||+|........          
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            457999999999999999999999887533444444433  3345566665  57899999974332211          


Q ss_pred             --cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-H----HhCC
Q 028292           79 --SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-R----EYGC  151 (211)
Q Consensus        79 --~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~  151 (211)
                        ..++..+|++++|+|+++..++++..  +...+.    ..++|+++|+||+|+.+.+....++..+.. .    ..++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  329 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQR--MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS  329 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence              23456789999999999877665422  333332    367999999999999765544444333222 2    2357


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          152 LFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       152 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      +++++||++|.|++++|+.+.+.+.+..
T Consensus       330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          330 PLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            8999999999999999999998876643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=7.2e-23  Score=153.69  Aligned_cols=165  Identities=14%  Similarity=0.151  Sum_probs=106.3

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCc-ceeeeEEEEEEECCeEEEEEEEeCCCcccccccc-------
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E-ELSPT-IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT-------   78 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------   78 (211)
                      +....++|+|+|++|||||||+++|++... . ...+. ...+.........+  ..+.||||||...+....       
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            345679999999999999999999998774 2 22222 22233333444444  468999999976543221       


Q ss_pred             ----cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEe-CCCCCCCcccCH-------HHHHHH
Q 028292           79 ----SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGN-KVDKESERVVSK-------KEGIDF  145 (211)
Q Consensus        79 ----~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~  145 (211)
                          ...++.+|++|+|+|+++.....   ..+...+... ......|.++++| |+|+.... +..       .++..+
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence                23578899999999998632221   1122233222 1122456666666 99996432 221       234445


Q ss_pred             HHHhCCc---E--EEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          146 AREYGCL---F--LECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       146 ~~~~~~~---~--~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      ....+..   +  +++||+++.|++++|.+|.+.+....
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            5555532   2  78999999999999999999998765

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.88  E-value=3e-23  Score=168.23  Aligned_cols=152  Identities=15%  Similarity=0.080  Sum_probs=101.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCcceeeeEEEEEEECCeE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKK   60 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~   60 (211)
                      ...+||+++|++++|||||+++|++...                              .......|.++......++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            3579999999999999999999986511                              0111122444444444455556


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHH------HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN------LADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      ..+.||||||+++|...+..++.++|++|+|+|+++..++..      ... .......   ....|+++|+||+|+.+.
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~~---~~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS---LGIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHHH---cCCCcEEEEEECcCcccc
Confidence            789999999999999999999999999999999998754322      111 2222221   233579999999999664


Q ss_pred             cccCHHHHHH----HHHHh-----CCcEEEeccCCCCCHHH
Q 028292          135 RVVSKKEGID----FAREY-----GCLFLECSAKTRVNVEQ  166 (211)
Q Consensus       135 ~~~~~~~~~~----~~~~~-----~~~~~~~Sa~~~~~v~~  166 (211)
                      .....++...    +....     +++++++||++|.|+++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            4333333333    33333     45899999999999975

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.88  E-value=5.9e-24  Score=172.65  Aligned_cols=159  Identities=19%  Similarity=0.153  Sum_probs=113.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.++|+++|++++|||||+++|.+..+ ....+..+.++....+... ....++||||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            567899999999999999999998766 3333333333333333321 22368999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHH---HHHh--CCcEEEeccCCCCCH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-KKEGIDF---AREY--GCLFLECSAKTRVNV  164 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v  164 (211)
                      |+|+++....+.... + ..+.    ..++|+++++||+|+.+..... ..+...+   ...+  .++++++||++|.|+
T Consensus        82 VVDa~dg~~~qt~e~-l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI  155 (537)
T 3izy_P           82 VVAADDGVMKQTVES-I-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM  155 (537)
T ss_dssp             ECBSSSCCCHHHHHH-H-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred             EEECCCCccHHHHHH-H-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence            999999766554433 2 2222    4678999999999986533211 1111111   1112  247999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 028292          165 EQCFEELVLKILD  177 (211)
Q Consensus       165 ~~~~~~i~~~~~~  177 (211)
                      ++++++|...+..
T Consensus       156 ~eLle~I~~l~~~  168 (537)
T 3izy_P          156 MALAEATIALAEM  168 (537)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhc
Confidence            9999999988753

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=1.9e-21  Score=151.92  Aligned_cols=163  Identities=19%  Similarity=0.126  Sum_probs=108.6

Q ss_pred             EE-EEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 028292           14 FK-LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSYY   82 (211)
Q Consensus        14 ~~-i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   82 (211)
                      ++ |+++|.+|+|||||+|+|++... ....+....+.....+.+++  ..+.+|||+|...         +...+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            44 99999999999999999998775 11222222234556667776  4578999999521         222222 46


Q ss_pred             cCccEEEEEEECCChh--cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHh---CCcEEEe
Q 028292           83 RGAQGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-SKKEGIDFAREY---GCLFLEC  156 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~  156 (211)
                      ..+|++++|+|++++.  .++.... +...+.... ..++|+++|+||+|+.+.... ....+..+....   +.+++++
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQS-SFEILREIG-VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHHT-CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHhC-cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            8899999999999876  4444433 555555443 467899999999998654311 011232333444   2478999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292          157 SAKTRVNVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~~~~  181 (211)
                      ||+++.|+++++++|.+.+......
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~~~~~  358 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQLSLE  358 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred             ECCCCcCHHHHHHHHHHHhcccCCC
Confidence            9999999999999999988765443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.87  E-value=7.4e-23  Score=164.96  Aligned_cols=156  Identities=18%  Similarity=0.147  Sum_probs=106.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC--------cccccccccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG--------QERFRTLTSSYY   82 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~   82 (211)
                      ....+|+|+|.+|||||||+|+|++..+.....++|.+.......+......+.+|||||        ++.+...+..++
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            456799999999999999999999988766777888888877777777777899999999        566667778888


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTR  161 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  161 (211)
                      .++|++|+|+|..+..+...  .++...+.    ..++|+++|+||+|+.....    ...++ ...++ .++++||++|
T Consensus       101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CCS-GGGSSSSEEECCTTTC
T ss_pred             hhCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhh----hHHHH-HHcCCCceEEeecccc
Confidence            99999999999987544332  22333333    46899999999999853321    11111 12343 5689999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 028292          162 VNVEQCFEELVLKILD  177 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~  177 (211)
                      .|+.++++++.+.+.+
T Consensus       170 ~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TTHHHHHHHHHTTGGG
T ss_pred             cchHHHHHHHHhhccc
Confidence            9999999999887654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=1.5e-22  Score=152.95  Aligned_cols=158  Identities=19%  Similarity=0.251  Sum_probs=93.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC--CCC-------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------cc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EEL-------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FR   75 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~   75 (211)
                      ..++|+|+|.+|+|||||+|+|++...  ..+       .++.+.+.....+..++..+.+.||||||...       +.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            569999999999999999999887665  222       34555555555555556667999999999622       22


Q ss_pred             ccc-------cccc-------------cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           76 TLT-------SSYY-------------RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        76 ~~~-------~~~~-------------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      .+.       ..++             ..+|+++++++.+.......-.. ++..+.    . ++|+++|+||+|+....
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~-~l~~l~----~-~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE-FMKRLH----E-KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHH-HHHHHT----T-TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHH-HHHHHh----c-cCCEEEEEeccCCCCHH
Confidence            221       1112             23679999998766322111112 333332    2 79999999999985433


Q ss_pred             ccC--HHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          136 VVS--KKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       136 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      +..  .+.+.+.....+++++++||++++|+++++.+|.+.+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            322  1234455567789999999999999999999988764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=7.9e-22  Score=157.98  Aligned_cols=156  Identities=22%  Similarity=0.162  Sum_probs=105.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC---CCC----------CCc-------------------ceeeeEEEEEE
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF---EEL----------SPT-------------------IGVDFKIKHVA   55 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~----------~~~-------------------~~~~~~~~~~~   55 (211)
                      ......++|+++|++++|||||+++|++...   ...          ..+                   .|.+.......
T Consensus        19 ~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~   98 (434)
T 1zun_B           19 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   98 (434)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE
Confidence            3445679999999999999999999986541   100          011                   12222222222


Q ss_pred             ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           56 LGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      +......+.||||||++.|...+..++..+|++|+|+|+++....+.. . +...+..   ....|+++|+||+|+.+..
T Consensus        99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~-~l~~~~~---~~~~~iIvviNK~Dl~~~~  173 (434)
T 1zun_B           99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-R-HSYIASL---LGIKHIVVAINKMDLNGFD  173 (434)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-H-HHHHHHH---TTCCEEEEEEECTTTTTSC
T ss_pred             eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHHH---cCCCeEEEEEEcCcCCccc
Confidence            333446799999999999988888889999999999999987543332 2 2233332   1224699999999996532


Q ss_pred             cc----CHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 028292          136 VV----SKKEGIDFAREYG-----CLFLECSAKTRVNVEQCF  168 (211)
Q Consensus       136 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~  168 (211)
                      ..    ..++...++..++     ++++++||++|.|+++++
T Consensus       174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence            11    2344556666677     689999999999998753

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=2.8e-21  Score=153.82  Aligned_cols=161  Identities=18%  Similarity=0.172  Sum_probs=111.9

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC----CCCCC--cceeeeEEEEEEE-------------C--C----eEEEE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSP--TIGVDFKIKHVAL-------------G--G----KKMKL   63 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~----~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   63 (211)
                      .....++|+++|+.++|||||+++|++...    .+..+  |....+....+..             .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            345779999999999999999999996432    12222  3332333332211             0  1    13689


Q ss_pred             EEEeCCCcccccccccccccCccEEEEEEECCCh----hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--c
Q 028292           64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--V  137 (211)
Q Consensus        64 ~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~  137 (211)
                      .||||||++.|.......+..+|++|+|+|+++.    ++++.+.     .+...   ...|+++++||+|+.+...  .
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~~---~~~~iivviNK~Dl~~~~~~~~  157 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-----ALQII---GQKNIIIAQNKIELVDKEKALE  157 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-----HHHHH---TCCCEEEEEECGGGSCHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-----HHHHc---CCCcEEEEEECccCCCHHHHHH
Confidence            9999999999888777778899999999999964    3443332     12221   2368999999999865432  1


Q ss_pred             CHHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          138 SKKEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       138 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      ..+++.++...   .+++++++||++|.|+++++++|.+.+..
T Consensus       158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            23344445443   35799999999999999999999987654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=1.9e-22  Score=156.68  Aligned_cols=119  Identities=16%  Similarity=0.188  Sum_probs=96.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV  129 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  129 (211)
                      .+.+.+||++|++.++..|..++++++++|+|||+++          ..+++....++..... .....++|++|++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~-~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN-NKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT-CGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc-CccccCCcEEEEEECc
Confidence            4679999999999999999999999999999999999          4568887774444433 2224679999999999


Q ss_pred             CCCCCc---------------ccCHHHHHHHHH-----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          130 DKESER---------------VVSKKEGIDFAR-----------EYGCLFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       130 D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      |+...+               .+..+++..++.           ..++.++++||+++.||+++|.++.+.+.+..
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            984322               356778888876           34678999999999999999999999987543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.87  E-value=9.5e-23  Score=159.42  Aligned_cols=165  Identities=21%  Similarity=0.309  Sum_probs=92.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-C-CC--------CCcceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-E-EL--------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ER   73 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   73 (211)
                      ...++|+|+|++|+|||||+++|++... . .+        .++.+.......+...+..+.+++|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            3568999999999999999999876543 1 11        133333333333444566778999999997       55


Q ss_pred             cccccc-------ccccCccE-----------EEEEEECCC-hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           74 FRTLTS-------SYYRGAQG-----------IIMVYDVTR-RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        74 ~~~~~~-------~~~~~~d~-----------~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      +..++.       .++.++++           .+++|++++ ..++..+...++..+     ..++|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCH
Confidence            555554       44433322           234444443 334444433243333     367999999999999765


Q ss_pred             cccCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292          135 RVVSK--KEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL  181 (211)
Q Consensus       135 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~  181 (211)
                      +.+..  +++..++..++++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            55443  466667777889999999999999 88899999988765543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.86  E-value=9.9e-22  Score=155.73  Aligned_cols=159  Identities=17%  Similarity=0.136  Sum_probs=112.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCC-------CCC--------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDT-------FEE--------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (211)
                      ..+||+++|++++|||||+++|++..       +..        .....|.+.......+......+.||||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            45899999999999999999998741       100        011233444444444544556799999999999888


Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHhC--
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VSKKEGIDFAREYG--  150 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--  150 (211)
                      .+...+..+|++|+|+|+++....+.... + ..+.    ..++| +++++||+|+.....   ...+++.+++..++  
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~----~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLAR----QIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHH----HTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            88888999999999999998654443332 3 3333    24678 689999999864221   12235556666665  


Q ss_pred             ---CcEEEeccCCCCC----------HHHHHHHHHHHHH
Q 028292          151 ---CLFLECSAKTRVN----------VEQCFEELVLKIL  176 (211)
Q Consensus       151 ---~~~~~~Sa~~~~~----------v~~~~~~i~~~~~  176 (211)
                         ++++++||++|.|          +.++++.|.+.+.
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence               5899999999764          7888888877664

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.2e-22  Score=166.59  Aligned_cols=153  Identities=15%  Similarity=0.092  Sum_probs=102.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------------------cceeeeEEEEEEECCeE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP------------------------------TIGVDFKIKHVALGGKK   60 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~   60 (211)
                      ...++|+++|++++|||||+++|++........                              ..|.++......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999999764311110                              12333333333344445


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cH---HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      ..+.||||||++.+...+...+..+|++|+|+|+++..   .|   ..... .......   ....|+++|+||+|+.+.
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~---lgi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS---LGIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHT---TTCCEEEEEEECTTTTTT
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHH---cCCCeEEEEEecccccch
Confidence            67999999999999999999999999999999998742   11   01111 1111221   223459999999999664


Q ss_pred             cccCHH----HHHHHHHHh-----CCcEEEeccCCCCCHHHH
Q 028292          135 RVVSKK----EGIDFAREY-----GCLFLECSAKTRVNVEQC  167 (211)
Q Consensus       135 ~~~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~  167 (211)
                      .....+    ++..+....     +++++++||++|.|+.++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            332222    333344444     358999999999999876

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.86  E-value=5.7e-22  Score=161.50  Aligned_cols=120  Identities=17%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-------------------C--CCCCcceeeeEEEEEEECCeEEEEEEEe
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-------------------E--ELSPTIGVDFKIKHVALGGKKMKLAIWD   67 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D   67 (211)
                      +..+..+|+|+|++|+|||||+++|+....                   +  ......|.+.......+....+.++|||
T Consensus         9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liD   88 (528)
T 3tr5_A            9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLD   88 (528)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEEC
T ss_pred             hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEE
Confidence            345678999999999999999999972111                   0  0000122222222233333456799999


Q ss_pred             CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      |||+..+...+..+++.+|++|+|+|+++..+...... |. .+.    ..++|+++++||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~-~~~----~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-ME-VCR----LRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HH-HHH----TTTCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEeCCCCccc
Confidence            99999999999999999999999999999877666543 33 232    457999999999998543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=2.6e-22  Score=160.73  Aligned_cols=157  Identities=22%  Similarity=0.233  Sum_probs=104.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC--CCCCC----------------------------CCcceeeeEEEEEEECCeE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TFEEL----------------------------SPTIGVDFKIKHVALGGKK   60 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~   60 (211)
                      ...++|+++|++++|||||+++|+..  .+...                            ....|.+.......++...
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45699999999999999999999864  22110                            0012333333333444455


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHH---HHHHHHHhhcCCCC-CcEEEEEeCCCCCCCc-
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLAD---IWAKEIDLYSTNQD-CIKLLVGNKVDKESER-  135 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~-  135 (211)
                      ..+.||||||+.+|...+..++..+|++|+|+|+++ .+|+....   .....+.... ..+ .|+++++||+|+.+.. 
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~-~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAK-TMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHH-HTTCTTCEEEEECGGGSSSTT
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHH-HcCCCeEEEEEEcccCCCccc
Confidence            679999999999999888889999999999999998 66764432   0111111111 234 4689999999996521 


Q ss_pred             -----ccCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHHH
Q 028292          136 -----VVSKKEGIDFAREYG-----CLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus       136 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~  169 (211)
                           ....+++.+++...+     ++++++||++|.|+.+++.
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 122345666666665     6799999999999986544

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.86  E-value=3.4e-21  Score=158.76  Aligned_cols=157  Identities=21%  Similarity=0.142  Sum_probs=107.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----CcceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----PTIGVDFKIKHV------------ALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~   74 (211)
                      +.++|+++|++++|||||+++|++..+....     ++.+..+.....            .++.....++||||||+..|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            5679999999999999999999976542222     222221111000            00011125899999999999


Q ss_pred             cccccccccCccEEEEEEECCC---hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-------------
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-------------  138 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------  138 (211)
                      ..++...+..+|++|+|+|+++   +++++.+..     +.    ..++|+++++||+|+.+.....             
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~-----l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI-----LR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-----HH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH-----HH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence            9999999999999999999999   555554321     22    3578999999999985422100             


Q ss_pred             H----------HHHHHHHHHhC---------------CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          139 K----------KEGIDFAREYG---------------CLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       139 ~----------~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      .          .+........+               ++++++||++|.|+++++++|...+..
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence            0          01111122222               379999999999999999999988754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=6.3e-22  Score=151.66  Aligned_cols=127  Identities=16%  Similarity=0.138  Sum_probs=98.8

Q ss_pred             EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhcHHHHHHHHHHHHHhhcCCCCC
Q 028292           51 IKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDC  120 (211)
Q Consensus        51 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~  120 (211)
                      ...+.+.  .+.+.+||++|++.++..|..++++++++|+|||++          +..+++....+|..... .....++
T Consensus       159 ~~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~-~~~~~~~  235 (327)
T 3ohm_A          159 EYPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT-YPWFQNS  235 (327)
T ss_dssp             EEEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT-SGGGTTC
T ss_pred             EEEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh-hhccCCc
Confidence            3344444  478999999999999999999999999999999654          66778777774444443 2224689


Q ss_pred             cEEEEEeCCCCCCCc----------------ccCHHHHHHHHH----------HhCCcEEEeccCCCCCHHHHHHHHHHH
Q 028292          121 IKLLVGNKVDKESER----------------VVSKKEGIDFAR----------EYGCLFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       121 p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      |+++++||+|+...+                ..+.+++.++..          ..++.++++||+++.||+.+|..+.+.
T Consensus       236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~  315 (327)
T 3ohm_A          236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  315 (327)
T ss_dssp             EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence            999999999984432                467778877743          345678999999999999999999999


Q ss_pred             HHcCCC
Q 028292          175 ILDTPS  180 (211)
Q Consensus       175 ~~~~~~  180 (211)
                      +.+...
T Consensus       316 Il~~~l  321 (327)
T 3ohm_A          316 ILQLNL  321 (327)
T ss_dssp             HHHTTC
T ss_pred             HHHHhH
Confidence            987643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.86  E-value=7.5e-22  Score=156.88  Aligned_cols=161  Identities=16%  Similarity=0.127  Sum_probs=113.1

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC--------CCCCC--------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD--------TFEEL--------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (211)
                      ....++|+++|++++|||||+++|++.        .+..+        ....|.++......+......+.||||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            346799999999999999999999873        11111        01334444444555555556799999999999


Q ss_pred             ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHh
Q 028292           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREY  149 (211)
Q Consensus        74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~  149 (211)
                      |.......+..+|++|+|+|+++....+. .. +...+..    .++| +++++||+|+......   ..++..+++..+
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~-~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HH-HHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            98888888999999999999998765433 33 3333332    4678 8899999998642211   123455666665


Q ss_pred             C-----CcEEEeccCCCCC------------------HHHHHHHHHHHHH
Q 028292          150 G-----CLFLECSAKTRVN------------------VEQCFEELVLKIL  176 (211)
Q Consensus       150 ~-----~~~~~~Sa~~~~~------------------v~~~~~~i~~~~~  176 (211)
                      +     ++++++||++|.|                  +.++++.|.+.+.
T Consensus       162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            5     6899999999987                  6666666666554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=9.5e-22  Score=140.99  Aligned_cols=122  Identities=20%  Similarity=0.244  Sum_probs=87.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC----c
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG----A   85 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~   85 (211)
                      ..+.++|+|+|++|||||||+++|.+..+.....+...+.     ..+...+.+.+|||||+..+...+..++..    +
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            4577999999999999999999999987632111111000     111134578999999999888777777765    8


Q ss_pred             cEEEEEEECC-ChhcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcc
Q 028292           86 QGIIMVYDVT-RRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKESERV  136 (211)
Q Consensus        86 d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~  136 (211)
                      |++|+|+|++ ++.++..+..++...+....  ...++|+++|+||+|+.....
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            9999999999 88899888775555444321  246899999999999976554

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.86  E-value=9.3e-22  Score=154.07  Aligned_cols=146  Identities=6%  Similarity=-0.004  Sum_probs=104.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      +|+++|++++|||||+++|+         ..+.+.......+......+.||||||+++|.......+..+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998         12222222223344445579999999999998777778899999999999 


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEe-CCCCCCCcccCH--HHHHHHHHHhC---CcEEE--eccCC---CC
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGN-KVDKESERVVSK--KEGIDFAREYG---CLFLE--CSAKT---RV  162 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~  162 (211)
                      +.. .+..... +...+.    ..++|. ++++| |+|+ +...+..  +++.++....+   +++++  +||++   +.
T Consensus        93 ~~g-~~~qt~e-~~~~~~----~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 PQG-LDAHTGE-CIIALD----LLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             TTC-CCHHHHH-HHHHHH----HTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             CCC-CcHHHHH-HHHHHH----HcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            543 3333333 333333    245777 88899 9998 4332221  34444544433   68999  99999   99


Q ss_pred             CHHHHHHHHHHHHHc
Q 028292          163 NVEQCFEELVLKILD  177 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~  177 (211)
                      |++++++.|.+.+..
T Consensus       166 gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          166 GVDELKARINEVAEK  180 (370)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhccc
Confidence            999999999988754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=4.4e-21  Score=148.96  Aligned_cols=119  Identities=13%  Similarity=0.195  Sum_probs=90.9

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                      ..+.+.+|||+|++.++..|..++++++++|+|||++          +..+|+....+|..... .....++|+++++||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~-~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHT-CGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHh-ccccCCCeEEEEEEC
Confidence            5789999999999999999999999999999999998          77889888884444443 222467999999999


Q ss_pred             CCCCCCcc--c-------------------CHHHHHHHHHH----------------hCCcEEEeccCCCCCHHHHHHHH
Q 028292          129 VDKESERV--V-------------------SKKEGIDFARE----------------YGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus       129 ~D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      +|+...+.  +                   ..+++..++..                ..+.++++||+++.||+++|.++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            99843211  1                   24566666443                12346899999999999999999


Q ss_pred             HHHHHcC
Q 028292          172 VLKILDT  178 (211)
Q Consensus       172 ~~~~~~~  178 (211)
                      .+.+.+.
T Consensus       340 ~~~I~~~  346 (354)
T 2xtz_A          340 DETLRRR  346 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=6.1e-22  Score=159.76  Aligned_cols=157  Identities=19%  Similarity=0.156  Sum_probs=90.2

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC----------------------C------CCcceeeeEEEEEEECCe
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE----------------------L------SPTIGVDFKIKHVALGGK   59 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~----------------------~------~~~~~~~~~~~~~~~~~~   59 (211)
                      ....++|+++|+.++|||||+++|+...  +..                      .      ....|.+.......+...
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            3567899999999999999999997521  110                      0      001122222221122223


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCc
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESER  135 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  135 (211)
                      ...+.||||||++.|...+...+..+|++|+|+|+++..   +|+.... +...+.... ..++| +++++||+|+....
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~~~-~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVLAR-TQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHHHH-HTTCSSEEEEEECTTSTTCS
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHHHH-HcCCCEEEEEEECccCCCcc
Confidence            467899999999999988888899999999999999862   2221111 111111111 35677 99999999985421


Q ss_pred             ------ccCHHHHHHHHHHh-------CCcEEEeccCCCCCHHHHH
Q 028292          136 ------VVSKKEGIDFAREY-------GCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus       136 ------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~  168 (211)
                            .....+...++...       +++++++||++|.|+.+++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                  11223455666655       3569999999999998765

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.84  E-value=1e-22  Score=164.20  Aligned_cols=153  Identities=18%  Similarity=0.246  Sum_probs=104.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+..+|+++|++++|||||+++|.+..+. ...+....+.....+..+  ...++||||||++.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            36689999999999999999999876542 111111111111122222  346899999999999999999999999999


Q ss_pred             EEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--ccCHHH--HHHHHHHhC--CcEEEeccCC
Q 028292           90 MVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVSKKE--GIDFAREYG--CLFLECSAKT  160 (211)
Q Consensus        90 lv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~  160 (211)
                      +|+|+++.   ++.+.+.     ...    ..++|+++++||+|+....  .+..+.  ...+...++  ++++++||++
T Consensus        80 LVVda~~g~~~qT~e~l~-----~~~----~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt  150 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAIQ-----HAK----AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA  150 (501)
T ss_dssp             EEEETTTBSCTTTHHHHH-----HHH----HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred             EEeecccCccHHHHHHHH-----HHH----hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence            99999884   4443321     121    3578999999999996421  111100  000112222  6899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028292          161 RVNVEQCFEELVLK  174 (211)
Q Consensus       161 ~~~v~~~~~~i~~~  174 (211)
                      |.|+++++++|...
T Consensus       151 G~gI~eLle~I~~~  164 (501)
T 1zo1_I          151 GTGIDELLDAILLQ  164 (501)
T ss_dssp             CTTCTTHHHHTTTT
T ss_pred             ccCcchhhhhhhhh
Confidence            99999999998753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.83  E-value=1.8e-20  Score=136.07  Aligned_cols=161  Identities=16%  Similarity=0.132  Sum_probs=103.9

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccc
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRT   76 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~   76 (211)
                      .+.....+|+++|++|||||||++++++..+ ..+.++.|.+.....+.+++   .+.+||+||...          +..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence            3455678999999999999999999998774 55567777665544444433   478999999642          222


Q ss_pred             cccccc---cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHhC-
Q 028292           77 LTSSYY---RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFAREYG-  150 (211)
Q Consensus        77 ~~~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~-  150 (211)
                      ....++   ..++++++++|++++.++....  +...+.    ..+.|+++++||+|+.....  .....+..++...+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            222333   5689999999999876653211  222222    35789999999999854321  11344555555554 


Q ss_pred             -CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          151 -CLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       151 -~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                       +.++++||+++.|+++++++|.+.+.+
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence             478999999999999999999887654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.83  E-value=2.6e-22  Score=165.76  Aligned_cols=149  Identities=22%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCcceeeeEEEEEEEC
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALG   57 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~   57 (211)
                      ......++|+++|++++|||||+++|+.....                              ......|.+.......+.
T Consensus       172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~  251 (592)
T 3mca_A          172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE  251 (592)
T ss_dssp             SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred             ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence            34557789999999999999999999742110                              000123444444444455


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh----------cHHHHHHHHHHHHHhhcCCCCCc-EEEEE
Q 028292           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD----------TFTNLADIWAKEIDLYSTNQDCI-KLLVG  126 (211)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p-~ivv~  126 (211)
                      .....+.||||||+..|...+...+..+|++|+|+|+++..          +.+.     ...+.    ..++| +|+|+
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~-----l~~~~----~lgip~iIvvi  322 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH-----AYLLR----ALGISEIVVSV  322 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH-----HHHHH----HSSCCCEEEEE
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH-----HHHHH----HcCCCeEEEEE
Confidence            55678999999999999998888999999999999998632          2222     12222    23555 89999


Q ss_pred             eCCCCCCCcccC----HHHHHHHH-HHhCC-----cEEEeccCCCCCHH
Q 028292          127 NKVDKESERVVS----KKEGIDFA-REYGC-----LFLECSAKTRVNVE  165 (211)
Q Consensus       127 nK~D~~~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~  165 (211)
                      ||+|+.......    ..++..+. ...++     +++++||++|.|+.
T Consensus       323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            999986522211    22333333 33344     79999999999998

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.83  E-value=1e-20  Score=163.08  Aligned_cols=161  Identities=16%  Similarity=0.075  Sum_probs=109.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCC-------CC--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT-------FE--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      ....++|+++|++++|||||+++|++..       +.        ....+.|.++....+.++.....+.||||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3467999999999999999999998741       10        11123444444333444455568999999999999


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHhC
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREYG  150 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~  150 (211)
                      .......+..+|++|+|+|+++....+.. . +...+..    .++| +++++||+|+.+....   ..+++.++....+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr-E-hL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQTR-E-HILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTHH-H-HHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHHH-H-HHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            88888889999999999999986443332 2 2233332    3677 7899999999653221   2245556666665


Q ss_pred             -----CcEEEeccCCC--------CCHHHHHHHHHHHHH
Q 028292          151 -----CLFLECSAKTR--------VNVEQCFEELVLKIL  176 (211)
Q Consensus       151 -----~~~~~~Sa~~~--------~~v~~~~~~i~~~~~  176 (211)
                           ++++++||++|        .|+.++++.|.+.+.
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence                 68999999999        457788877776554

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.83  E-value=3.9e-21  Score=146.98  Aligned_cols=161  Identities=18%  Similarity=0.142  Sum_probs=102.1

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCCcce----------------------eeeE-----------
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-----ELSPTIG----------------------VDFK-----------   50 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-----~~~~~~~----------------------~~~~-----------   50 (211)
                      +....++|+|+|.+|||||||+|+|++..+.     .....++                      +++.           
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            3456789999999999999999999998763     1111121                      1100           


Q ss_pred             ------------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCccEEE-EEEECCChhcHHHH
Q 028292           51 ------------IKHVALG-GKKMKLAIWDTAGQE-------------RFRTLTSSYYRGAQGII-MVYDVTRRDTFTNL  103 (211)
Q Consensus        51 ------------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~  103 (211)
                                  ...+.+. .....+.||||||..             .+..+...++..++.+| +|+|+++..+....
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                        0000000 012579999999953             23445566777887666 69999876544332


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--hC-CcEEEeccCCCCCHHHHHHHHHHH
Q 028292          104 ADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE--YG-CLFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       104 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                      .. +...+.    ..+.|+++|+||+|+.+......+.+......  .+ .+++++||++|.|+++++++|.+.
T Consensus       182 ~~-~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          182 LK-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HH-HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HH-HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            22 333332    46799999999999966543222222110001  12 367899999999999999998874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=4.6e-20  Score=138.51  Aligned_cols=126  Identities=19%  Similarity=0.209  Sum_probs=84.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-----   83 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   83 (211)
                      .+.++|+++|.+|+|||||+++|++.......+..+++.  ....+..++  ..+.||||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            367999999999999999999999987633344343333  333344444  47999999998777654433332     


Q ss_pred             ----CccEEEEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCH
Q 028292           84 ----GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSK  139 (211)
Q Consensus        84 ----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~  139 (211)
                          ++|++++|++++... +......|...+.... .....|+++|+||+|+.+.+....
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  171 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY  171 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence                789999999987654 3333222555554432 122359999999999965444433

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.82  E-value=9.3e-21  Score=152.51  Aligned_cols=152  Identities=16%  Similarity=0.147  Sum_probs=102.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCC--CCCC----------------------------CCcceeeeEEEEEEECCeE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FEEL----------------------------SPTIGVDFKIKHVALGGKK   60 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~   60 (211)
                      ...++|+++|++++|||||+++|++..  +...                            ....|.+.......++...
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            356999999999999999999998641  1100                            0012222222222333445


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHH---HHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLADIWAKEIDLYSTNQDCI-KLLVGNKVDKES  133 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  133 (211)
                      ..+.||||||++.|...+...+..+|++|+|+|+++..   +|+   .... +.....    ..++| +++++||+|+.+
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~----~~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAF----TLGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHH----HTTCCEEEEEEECGGGGT
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence            67999999999999988888999999999999998763   221   1222 122222    23555 899999999863


Q ss_pred             Ccc----cCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHH
Q 028292          134 ERV----VSKKEGIDFAREYG-----CLFLECSAKTRVNVEQC  167 (211)
Q Consensus       134 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  167 (211)
                      ...    ...+++..++...+     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            211    12234555556555     68999999999999754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=1.2e-20  Score=145.04  Aligned_cols=118  Identities=18%  Similarity=0.231  Sum_probs=94.0

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                      ..+.+.+||++|++.++..|..++++++++|+|||++          +..++++...+|...+.... ..++|+++++||
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~-~~~~piiLv~NK  237 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF-LKGAVKLIFLNK  237 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG-GTTSEEEEEEEC
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc-cCCCeEEEEEEC
Confidence            3477999999999999999999999999999999998          67888888875555554322 478999999999


Q ss_pred             CCCCCCc---------------ccCHHHHHHHHHH-h--------------------------CCcEEEeccCCCCCHHH
Q 028292          129 VDKESER---------------VVSKKEGIDFARE-Y--------------------------GCLFLECSAKTRVNVEQ  166 (211)
Q Consensus       129 ~D~~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~v~~  166 (211)
                      +|+...+               ....+++.+++.. +                          .+.++++||++..+|+.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            9983211               1245566555432 2                          36789999999999999


Q ss_pred             HHHHHHHHHHc
Q 028292          167 CFEELVLKILD  177 (211)
Q Consensus       167 ~~~~i~~~~~~  177 (211)
                      +|..+.+.+.+
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999886

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.81  E-value=1.6e-19  Score=147.34  Aligned_cols=118  Identities=16%  Similarity=0.147  Sum_probs=80.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CC-------------------CCCcceeeeEEEEEEECCeEEEEEEEeC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE-------------------LSPTIGVDFKIKHVALGGKKMKLAIWDT   68 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   68 (211)
                      ..+.++|+++|++|+|||||+++|+....  ..                   .....|.++......+....+.++||||
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            45679999999999999999999996421  00                   0112222222222223334467999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        69 ~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      ||+..+...+..++..+|++|+|+|+++...... .. +.....    ..++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~-~~~~~~----~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK-LMEVTR----LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH-HHHHHT----TTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH-HHHHHH----HcCCCEEEEEcCcCCcc
Confidence            9999998888888999999999999998644322 11 222222    46799999999999854

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.80  E-value=5.5e-19  Score=133.20  Aligned_cols=127  Identities=18%  Similarity=0.139  Sum_probs=85.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc-------c--c
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS-------S--Y   81 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~--~   81 (211)
                      ...++|+|+|.+|+|||||+|+|++..+....+..+++.......+......+.||||||...+.....       .  .
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            357999999999999999999999887644445555544444444444456799999999866543221       1  1


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccC
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVS  138 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~  138 (211)
                      ...+|++++|+|++.. ++......|+..+.... ....+|+++|+||+|+.+.....
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~  173 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  173 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence            3478999999998653 33333222555554432 12237999999999997655433

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=5e-19  Score=148.21  Aligned_cols=118  Identities=15%  Similarity=0.101  Sum_probs=83.0

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCC----------------cceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSP----------------TIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ...+..+|+++|+.|+|||||+++|++.... ....                ..+.++......+....+.++||||||+
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY   84 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence            3456789999999999999999999853321 0000                1122333333333334578999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      ..+...+..++..+|++++|+|+++....... . +...+.    ..++|+++++||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~-~~~~~~----~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-R-AWTVAE----RLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-H-HHHHHH----HTTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-H-HHHHHH----HccCCEEEEecCCchh
Confidence            99988888899999999999999876554333 2 333333    2578999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.80  E-value=8.9e-19  Score=138.60  Aligned_cols=161  Identities=22%  Similarity=0.198  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc----cccccc---cccCcc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF----RTLTSS---YYRGAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~d   86 (211)
                      .|+|+|++|||||||++++++... ....+..........+..++ ...+.+||+||....    ..+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999998753 11111111122222333333 246889999996432    112222   245689


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      .++.++|++ ...+..+.. +...+..+.. ....|.++|+||+|+...  ...++..+.....+++++.+||++++|++
T Consensus       238 ~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            999999998 555666555 4444443321 236889999999998554  23344445555667899999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028292          166 QCFEELVLKILDTPS  180 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~  180 (211)
                      +++++|.+.+.+...
T Consensus       314 eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          314 ALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999987654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.79  E-value=3.4e-19  Score=137.22  Aligned_cols=166  Identities=15%  Similarity=0.191  Sum_probs=100.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CC----CCCcceeeeEEE--------------------------------
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EE----LSPTIGVDFKIK--------------------------------   52 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~----~~~~~~~~~~~~--------------------------------   52 (211)
                      .....+|+|+|.+|+|||||+|+|++..+ +.    ....++......                                
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            34567999999999999999999998876 11    111111000000                                


Q ss_pred             ---------------------EEE-ECCeEEEEEEEeCCCccc-------------ccccccccccCccEEEEEEECCCh
Q 028292           53 ---------------------HVA-LGGKKMKLAIWDTAGQER-------------FRTLTSSYYRGAQGIIMVYDVTRR   97 (211)
Q Consensus        53 ---------------------~~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~   97 (211)
                                           .+. .......+.||||||...             +......++..+|++++|+|..+.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 111124689999999643             344556678899999999997443


Q ss_pred             hcH-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC------CCCHHHHHHH
Q 028292           98 DTF-TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT------RVNVEQCFEE  170 (211)
Q Consensus        98 ~s~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~~~  170 (211)
                      ... ..... +...+.    ..+.|+++|+||+|+........+.+......++..++++++..      +.|+.+++..
T Consensus       181 ~~~~~~~~~-i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~  255 (315)
T 1jwy_B          181 DLANSDALQ-LAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS  255 (315)
T ss_dssp             CSTTCSHHH-HHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred             chhhhHHHH-HHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence            211 11111 222222    46799999999999965544222222211111225666666544      7899999999


Q ss_pred             HHHHHHcCCC
Q 028292          171 LVLKILDTPS  180 (211)
Q Consensus       171 i~~~~~~~~~  180 (211)
                      +.+.+.....
T Consensus       256 ~~~~~~~~~~  265 (315)
T 1jwy_B          256 EILYFKNHPI  265 (315)
T ss_dssp             HHHHHHTCTT
T ss_pred             HHHHHhCCCc
Confidence            9998877554

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=4.3e-19  Score=149.19  Aligned_cols=163  Identities=17%  Similarity=0.179  Sum_probs=107.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccee--------------eeE--------------------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--------------DFK--------------------------   50 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--------------~~~--------------------------   50 (211)
                      ...++|+|+|.+|+|||||+|+|++.........+++              +..                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            3679999999999999999999998876332222222              000                          


Q ss_pred             ---------------EEEEEECCeE--EEEEEEeCCCccc---ccccccccccCccEEEEEEECCChhcHHHHHHHHHHH
Q 028292           51 ---------------IKHVALGGKK--MKLAIWDTAGQER---FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKE  110 (211)
Q Consensus        51 ---------------~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~  110 (211)
                                     ...+.+....  ..+.||||||...   .......++.++|++|+|+|++++.+...... |...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence                           0000000000  2589999999554   33455677889999999999998877766543 4333


Q ss_pred             HHhhcCCCCCcEEEEEeCCCCCCCcccCHH----------HHHHH----HH-H--------hCCcEEEeccC--------
Q 028292          111 IDLYSTNQDCIKLLVGNKVDKESERVVSKK----------EGIDF----AR-E--------YGCLFLECSAK--------  159 (211)
Q Consensus       111 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~~----~~-~--------~~~~~~~~Sa~--------  159 (211)
                      +.    ..+.|+++|+||+|+.....+..+          .....    .. .        ...+++++||+        
T Consensus       226 l~----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~  301 (695)
T 2j69_A          226 IK----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK  301 (695)
T ss_dssp             TT----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred             HH----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence            32    347789999999998543211110          11111    11 1        12478999999        


Q ss_pred             ------CCCCHHHHHHHHHHHHHcC
Q 028292          160 ------TRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       160 ------~~~~v~~~~~~i~~~~~~~  178 (211)
                            ++.|+++++.+|.+.+.+.
T Consensus       302 ~~~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          302 NPQADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             CTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             CchhhhhccCHHHHHHHHHHHHHHh
Confidence                  9999999999999887643

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.79  E-value=7.9e-19  Score=147.51  Aligned_cols=119  Identities=18%  Similarity=0.238  Sum_probs=83.2

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC---CC------------CcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE---LS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~---~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      +..+..+|+|+|++|+|||||+++|+...  +..   ..            ...+.+.......+....+.++||||||+
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~   87 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH   87 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence            34678999999999999999999998421  100   00            01122222212222223467999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      ..+...+..++..+|++|+|+|+++..++..... |.. +.    ..++|+++++||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~-~~----~~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQ-AE----KYKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHH-HH----HTTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHH-HH----HcCCCEEEEEECCCccc
Confidence            9998888999999999999999999887766544 443 22    25799999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=2.8e-19  Score=136.52  Aligned_cols=163  Identities=20%  Similarity=0.250  Sum_probs=87.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC-CCCCCC---------CcceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD-TFEELS---------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ER   73 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   73 (211)
                      .-.++|+|+|++|+|||||+++|.+. .+....         ++.........+...+....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34589999999999999999998875 332111         11111111122222344568999999997       44


Q ss_pred             cccccc-------ccccC-------------ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           74 FRTLTS-------SYYRG-------------AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        74 ~~~~~~-------~~~~~-------------~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      +.....       .++.+             +++++++.+.+. .+++....   ..+....  .++|+++|+||.|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~--~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIH--NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHT--TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHH--hcCCEEEEEEeCCCCC
Confidence            444332       22222             234444444332 12333221   2233322  4689999999999865


Q ss_pred             Cccc--CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292          134 ERVV--SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS  180 (211)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~  180 (211)
                      .+++  ..+++.+++..++++++++||+++ +++++|.++.+.+.+..+
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            4433  245777888899999999999999 999999999999976544

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.77  E-value=8.9e-18  Score=141.32  Aligned_cols=119  Identities=16%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCCC---C------------CcceeeeEEE--EEEEC-----CeEEEEE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEEL---S------------PTIGVDFKIK--HVALG-----GKKMKLA   64 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~---~------------~~~~~~~~~~--~~~~~-----~~~~~~~   64 (211)
                      ...+..+|+|+|+.++|||||+++|+...  +...   .            ...+.+....  .+.+.     +..+.++
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            44577899999999999999999997531  1100   0            0122222222  22222     2338899


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      ||||||+.+|...+...++.+|++|+|+|+++..+...... |.. ..    ..++|+++++||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~-~~----~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQ-AN----KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHH-HH----HcCCCEEEEEeCCCccc
Confidence            99999999998888889999999999999998766554433 332 22    35789999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=3.3e-18  Score=143.77  Aligned_cols=119  Identities=15%  Similarity=0.173  Sum_probs=82.9

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhC--CCCC---CCC------------cceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD--TFEE---LSP------------TIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      +..+..+|+|+|++|+|||||+++|+..  .+..   ..+            ..+.+.......+....+.++||||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            3457899999999999999999999952  2110   000            1111111111122222467999999999


Q ss_pred             ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .++...+..+++.+|++|+|+|+++..++..... |.. +.    ..++|+++|+||+|+..
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~----~~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-AT----TYGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HH----HTTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HH----HcCCCEEEEEECCCccc
Confidence            9998888889999999999999999877766544 433 32    25789999999999854

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=7e-20  Score=144.55  Aligned_cols=83  Identities=24%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee----EEEEE-------------------EECC-eEEEEEEEeCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF----KIKHV-------------------ALGG-KKMKLAIWDTA   69 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~----~~~~~-------------------~~~~-~~~~~~i~D~~   69 (211)
                      ++|+++|.+|||||||+|+|++... .....++++.    ....+                   .+++ ...++.|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            5899999999999999999998763 2222222211    11111                   1122 24789999999


Q ss_pred             Cccc----ccccc---cccccCccEEEEEEECCCh
Q 028292           70 GQER----FRTLT---SSYYRGAQGIIMVYDVTRR   97 (211)
Q Consensus        70 g~~~----~~~~~---~~~~~~~d~~ilv~d~~~~   97 (211)
                      |...    ...+.   ...++++|++++|+|+++.
T Consensus        80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9743    22222   2457899999999999875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.75  E-value=6.5e-19  Score=137.99  Aligned_cols=157  Identities=15%  Similarity=0.169  Sum_probs=102.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcce---eee--------------------------------------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIG---VDF--------------------------------------   49 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~---~~~--------------------------------------   49 (211)
                      ...+|+|+|++|||||||+++|++..+ +.......   ...                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            445999999999999999999999776 21111110   000                                      


Q ss_pred             -----------EEEEEEE-CCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEECCChhcHHHHH
Q 028292           50 -----------KIKHVAL-GGKKMKLAIWDTAGQERF-------------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLA  104 (211)
Q Consensus        50 -----------~~~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~  104 (211)
                                 ....+.+ ......+++|||||...+             ..+...++.++|++|+|+|..+......  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence                       0001110 111235899999997665             4556677899999999998765433221  


Q ss_pred             HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292          105 DIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus       105 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      . +...+.... ..+.|+++|+||+|+.+......+.+..+....+.+|+.++++++.++++.+..+.
T Consensus       191 ~-~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 D-AIKISREVD-PSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             H-HHHHHHHSC-TTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             H-HHHHHHHhc-ccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            1 344444333 56789999999999976655544444444455678899999999888877655543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=3.1e-18  Score=135.60  Aligned_cols=157  Identities=18%  Similarity=0.223  Sum_probs=82.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCC-CC--------CCcceeeeEEEEEEE--CCeEEEEEEEeCCCccccc-----
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-EL--------SPTIGVDFKIKHVAL--GGKKMKLAIWDTAGQERFR-----   75 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~--------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~-----   75 (211)
                      -.++|+|+|++|+|||||++.|++..+. ..        .++.+  .....+.+  .+....+++||++|.....     
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~--~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE--EEEEECC------CEEEEEEECC-----------
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee--eeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            4578999999999999999999987651 11        11111  11122222  2333578999999964421     


Q ss_pred             --c------------------cccccccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           76 --T------------------LTSSYYRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        76 --~------------------~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                        .                  +.+.++.++++.+++|+.... .++......|+..+.     .++|+|+|+||+|+...
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH
Confidence              1                  123345566655555555432 234333322444432     47999999999999765


Q ss_pred             cccCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          135 RVVSK--KEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       135 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      +.+..  ..+.+++..++++++++|++++.++++++..+...+
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            55554  567778888899999999999999998877776543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.74  E-value=7.8e-18  Score=131.21  Aligned_cols=131  Identities=16%  Similarity=0.188  Sum_probs=94.1

Q ss_pred             CcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhcHHHHHHHHHHHHH
Q 028292           43 PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEID  112 (211)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~  112 (211)
                      +|.|..  ...+.++  .+.+.+||++|++.++..|..++.+++++|+|||+++          ..+++....+|...+.
T Consensus       187 ~T~Gi~--~~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~  262 (362)
T 1zcb_A          187 PTKGIH--EYDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN  262 (362)
T ss_dssp             CCSSEE--EEEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             CccceE--EEEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence            455543  3344444  4779999999999999999999999999999999999          6788888885555444


Q ss_pred             hhcCCCCCcEEEEEeCCCCCCCc----------------ccCHHHHHHHHH-----------HhCCcEEEeccCCCCCHH
Q 028292          113 LYSTNQDCIKLLVGNKVDKESER----------------VVSKKEGIDFAR-----------EYGCLFLECSAKTRVNVE  165 (211)
Q Consensus       113 ~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~  165 (211)
                      ... ..++|+++++||+|+...+                .+..+++..++.           ..++.++++||+++.||+
T Consensus       263 ~~~-~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~  341 (362)
T 1zcb_A          263 NRV-FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR  341 (362)
T ss_dssp             CGG-GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred             chh-hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHH
Confidence            322 4679999999999984321                256677777652           345788999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028292          166 QCFEELVLKILDT  178 (211)
Q Consensus       166 ~~~~~i~~~~~~~  178 (211)
                      ++|.++.+.+.+.
T Consensus       342 ~vF~~v~~~i~~~  354 (362)
T 1zcb_A          342 LVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=1.9e-18  Score=132.02  Aligned_cols=133  Identities=19%  Similarity=0.162  Sum_probs=104.5

Q ss_pred             HHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh-cHHHHH
Q 028292           28 TLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLA  104 (211)
Q Consensus        28 tli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~  104 (211)
                      +|+.+++.+.+  ..+.|+.|..+. ..+..++   .+.+||+  ++++..+++.+++++|++|+|||++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            68888888877  457788884443 3322222   6899999  8899999999999999999999999997 677666


Q ss_pred             HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHH
Q 028292          105 DIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus       105 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                      . |+..+..    .++|+++|+||+|+.+.+.+  +++.+++..++  .+++++||++|.|++++|.++..
T Consensus       106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 K-FLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             H-HHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             H-HHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            6 6665543    57999999999999654433  45667777777  89999999999999999987653

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.73  E-value=1.3e-17  Score=130.96  Aligned_cols=124  Identities=18%  Similarity=0.138  Sum_probs=95.3

Q ss_pred             EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhcHHHHHHHHHHHHHhhcCCCCCc
Q 028292           52 KHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCI  121 (211)
Q Consensus        52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p  121 (211)
                      ..+.+++  +.+.+||++|++.++..|..++++++++|+|||+++          ..+|+.... |...+.......++|
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~p  286 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTIS  286 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCC
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCe
Confidence            3445554  789999999999999999999999999999999999          889999888 444444332246799


Q ss_pred             EEEEEeCCCCCCCcc---c---------------------------CHHHHHHHHH-----H--------hCCcEEEecc
Q 028292          122 KLLVGNKVDKESERV---V---------------------------SKKEGIDFAR-----E--------YGCLFLECSA  158 (211)
Q Consensus       122 ~ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~~-----~--------~~~~~~~~Sa  158 (211)
                      ++|++||+|+...+.   +                           ..+++..++.     .        .++.++++||
T Consensus       287 iiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA  366 (402)
T 1azs_C          287 VILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCA  366 (402)
T ss_dssp             EEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCT
T ss_pred             EEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEe
Confidence            999999999843221   1                           1345555532     1        2456789999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028292          159 KTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~~~~~  178 (211)
                      +++.||+++|.++.+.+...
T Consensus       367 ~d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          367 VDTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCcCHHHHHHHHHHHHHHH
Confidence            99999999999999888654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.69  E-value=1.8e-17  Score=129.45  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=70.1

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK  139 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  139 (211)
                      .+.+.||||||..   ......+..+|++|+|+|....+.+..+..        .  ....|+++|+||+|+........
T Consensus       171 ~~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~--~~~~p~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          171 GFDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKK--------G--VLELADIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             TCCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCT--------T--SGGGCSEEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHH--------h--HhhcCCEEEEECCCCcChhHHHH
Confidence            3578999999943   223334578999999999877654422211        0  13468999999999853322111


Q ss_pred             --HHHHHHHH-------HhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          140 --KEGIDFAR-------EYGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       140 --~~~~~~~~-------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                        .+......       .++.+++++||++|+|+++++++|.+.+..
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence              11111111       125789999999999999999999998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.69  E-value=5.6e-17  Score=118.56  Aligned_cols=154  Identities=16%  Similarity=0.097  Sum_probs=95.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-C----ccee----------eeEEEEEEE----------------CCeE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-P----TIGV----------DFKIKHVAL----------------GGKK   60 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~----~~~~----------~~~~~~~~~----------------~~~~   60 (211)
                      +..+|+++|.+|||||||+++|+........ .    ..+.          ......+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            5679999999999999999999875321100 0    0000          001111111                1123


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK  140 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  140 (211)
                      +.+.+|||+|......   .+....+.+++|+|+.+....  ... +...       .+.|+++|+||+|+.+......+
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI-------FRVADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence            4678899988411111   111256889999998776421  111 1111       24788999999998543334556


Q ss_pred             HHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          141 EGIDFAREY--GCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       141 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      +..++....  +++++++||++|.|+++++++|.+.+...
T Consensus       176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            666666554  46899999999999999999999988654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=1.1e-15  Score=118.48  Aligned_cols=146  Identities=18%  Similarity=0.161  Sum_probs=89.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQERFR--   75 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~--   75 (211)
                      ++|+++|.+|||||||+|+|++... ....|....+.....+.+.+.               ...+.+|||||.....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            6899999999999999999998764 111111111111112333332               1469999999976542  


Q ss_pred             --ccc---cccccCccEEEEEEECCCh----------hcHHHHHHHHHHH------------------------------
Q 028292           76 --TLT---SSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKE------------------------------  110 (211)
Q Consensus        76 --~~~---~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~------------------------------  110 (211)
                        .+.   ..+++++|++++|+|+++.          +.++++.. +...                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~-i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDT-INTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHH-HHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence              222   2347899999999999862          22333221 1000                              


Q ss_pred             ----------H-------------------HhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292          111 ----------I-------------------DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT  160 (211)
Q Consensus       111 ----------~-------------------~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (211)
                                +                   ..+.....+|+++++|+.|..-......+.+.+++...+.+++++||+.
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                      1                   1111234699999999999642222335566778888899999999653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.68  E-value=8.9e-17  Score=131.67  Aligned_cols=119  Identities=15%  Similarity=0.140  Sum_probs=83.6

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCC---------------------CCCCCCcceeeeEEEEEEECCeEEEEEEEe
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT---------------------FEELSPTIGVDFKIKHVALGGKKMKLAIWD   67 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   67 (211)
                      +..+.-||+|+|+.++|||||..+|+...                     +.......|.++......+....+.++|+|
T Consensus        27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlID  106 (548)
T 3vqt_A           27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLD  106 (548)
T ss_dssp             HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEEC
T ss_pred             cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEe
Confidence            44577899999999999999999997321                     111112223333333333334457899999


Q ss_pred             CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      |||+.+|.......++-+|++|+|+|+...-.-+.... |... .    ..++|+++++||+|...
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a-~----~~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVC-R----MRATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHH-H----HTTCCEEEEEECTTSCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHH-H----HhCCceEEEEecccchh
Confidence            99999999999999999999999999998755544333 4332 2    47899999999999754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=2.8e-18  Score=134.03  Aligned_cols=158  Identities=16%  Similarity=0.120  Sum_probs=93.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCCcce----------------------eeeE-------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-----ELSPTIG----------------------VDFK-------------   50 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-----~~~~~~~----------------------~~~~-------------   50 (211)
                      ....+|+|+|.+|||||||+|+|++..+.     .....++                      +++.             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            45679999999999999999999998762     1111122                      0000             


Q ss_pred             ----------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCcc-EEEEEEECCChhcHHHHHH
Q 028292           51 ----------IKHVALG-GKKMKLAIWDTAGQE-------------RFRTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLAD  105 (211)
Q Consensus        51 ----------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~  105 (211)
                                ...+.+. .....+.||||||..             .+..+...++.+.+ ++++|.|++....-..   
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence                      0001111 113569999999953             23344555665555 5555666654322112   


Q ss_pred             HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH--HHHHhC-CcEEEeccCCCCCHHHHHHHHHH
Q 028292          106 IWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID--FAREYG-CLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus       106 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                       +...+.... ..+.|+++|+||+|+.+...........  +....+ .+++++||+++.|++++++++.+
T Consensus       186 -~~~i~~~~~-~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 -ALKVAKEVD-PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             -HHHHHHHHC-TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             -HHHHHHHhC-cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence             222233222 4679999999999996543321211110  001123 25788999999999999999876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.66  E-value=1.1e-18  Score=128.06  Aligned_cols=154  Identities=19%  Similarity=0.198  Sum_probs=91.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCcceeeeE------------EEEEEEC-Ce------------------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK------------IKHVALG-GK------------------   59 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~------------~~~~~~~-~~------------------   59 (211)
                      +.++|+|+|.+|||||||+++|+...+.. ..++.+.++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            56899999999999999999999875522 2223222221            1111111 10                  


Q ss_pred             -EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 028292           60 -KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS  138 (211)
Q Consensus        60 -~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  138 (211)
                       .+.+.++|++|.-....   .+-...+..+.+.|.........  . +...       .+.|.++|+||+|+.+.....
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~-~~~~-------~~~~~iiv~NK~Dl~~~~~~~  183 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--K-HPGI-------MKTADLIVINKIDLADAVGAD  183 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--T-CHHH-------HTTCSEEEEECGGGHHHHTCC
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--h-hhhH-------hhcCCEEEEeccccCchhHHH
Confidence             01345556555211100   01112344566666432211100  0 1111       136789999999985543355


Q ss_pred             HHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          139 KKEGIDFAREY--GCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       139 ~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      .++...++...  +++++++||++|.|++++|++|.+.+...
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            66666666655  57899999999999999999999887653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.65  E-value=7.8e-16  Score=126.24  Aligned_cols=123  Identities=17%  Similarity=0.250  Sum_probs=81.6

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCcceeeeEEEEEEECCe-----------------------E-
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGK-----------------------K-   60 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------------------~-   60 (211)
                      .......++|+|+|.+|+|||||+|+|++..+.  ...+...++...... ....                       . 
T Consensus        59 ~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~-~~~~~~i~~g~~l~~~~~~~~~~L~~~g~  137 (550)
T 2qpt_A           59 DADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM-HGETEGTVPGNALVVDPEKPFRKLNPFGN  137 (550)
T ss_dssp             STTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEE-CCSSSEEECCC------------------
T ss_pred             cccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEE-ECCcccccCCceeeecCcccHHHHhhhcc
Confidence            344567899999999999999999999998763  222222222111110 0000                       0 


Q ss_pred             ----------------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHh
Q 028292           61 ----------------MKLAIWDTAGQER-----------FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL  113 (211)
Q Consensus        61 ----------------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~  113 (211)
                                      ..+.||||||...           +...+..++..+|++|+|+|+++....+.... +...+. 
T Consensus       138 ~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~-  215 (550)
T 2qpt_A          138 TFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALR-  215 (550)
T ss_dssp             CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTT-
T ss_pred             cccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHH-
Confidence                            2589999999764           33455567788999999999988644444433 444333 


Q ss_pred             hcCCCCCcEEEEEeCCCCCCCc
Q 028292          114 YSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus       114 ~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                         ..+.|+++|+||+|+....
T Consensus       216 ---~~~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          216 ---GHEDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             ---TCGGGEEEEEECGGGSCHH
T ss_pred             ---hcCCCEEEEEECCCccCHH
Confidence               3568999999999986543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.65  E-value=3.9e-16  Score=133.75  Aligned_cols=117  Identities=19%  Similarity=0.185  Sum_probs=86.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CC---------------C--CCcceeeeEEEEEE------------ECC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE---------------L--SPTIGVDFKIKHVA------------LGG   58 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~---------------~--~~~~~~~~~~~~~~------------~~~   58 (211)
                      ..+..||+|+|+.++|||||+++|+....  ..               .  ..+.........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            34678999999999999999999986421  00               0  01111111222222            234


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      ..+.++||||||+.+|...+..+++.+|++|+|+|+++..+++.... |....     ..++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~-----~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHH-----HcCCCeEEEEECCCcc
Confidence            47899999999999999999999999999999999999988877544 44332     3578999999999984

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.62  E-value=2.8e-15  Score=112.29  Aligned_cols=113  Identities=17%  Similarity=-0.002  Sum_probs=70.6

Q ss_pred             EEEEEEeCCCccccccccc------ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      +.+.||||||.........      ..+.. +++|+++|.............+........ ..++|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-ccCCCeEEEEeccccccc
Confidence            5799999999765432211      23456 888999988654433332221111111111 346899999999998553


Q ss_pred             cccCHHHHHH----------------------------HHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          135 RVVSKKEGID----------------------------FAREYG--CLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       135 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      ..+  ++..+                            +...++  ++++++||+++.|+++++++|.+.+..
T Consensus       187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            321  11111                            123333  489999999999999999999988754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=117.54  Aligned_cols=102  Identities=8%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK  140 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  140 (211)
                      +.+.|+||+|....   .......+|++++|+|++.+...+.+..    .      ....|.++|+||+|+.+.... ..
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~------il~~~~ivVlNK~Dl~~~~~~-~~  232 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----G------IIEMADLVAVTKSDGDLIVPA-RR  232 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHH-HH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----H------HHhcCCEEEEeeecCCCchhH-HH
Confidence            46889999995321   2334568999999999987643222111    0      124578999999998432111 01


Q ss_pred             HHHHHHH----------HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          141 EGIDFAR----------EYGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       141 ~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      ....+..          .+..+++.+||++|.|+++++++|.+.+.
T Consensus       233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            1112211          12457899999999999999999998764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.60  E-value=2.3e-15  Score=117.36  Aligned_cols=151  Identities=19%  Similarity=0.132  Sum_probs=90.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-------------------KKMKLAIWDTAGQER   73 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~   73 (211)
                      ++|+++|.+|+|||||+++|++... ....+....+.......+.+                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999998642 11111111111111112221                   235799999999765


Q ss_pred             cc----cc---ccccccCccEEEEEEECCCh----------hcHHHHHHHHHHH--------------------------
Q 028292           74 FR----TL---TSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKE--------------------------  110 (211)
Q Consensus        74 ~~----~~---~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~--------------------------  110 (211)
                      ..    .+   ....++++|++++|+|+++.          +.+.++.. +...                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~-i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~  160 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEV-VETELLLADLATLERRLERLRKEARADRER  160 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHH-HhhHHHHccHHHHHHHHHHHHhhhccchhH
Confidence            42    12   22347899999999999852          12222211 0000                          


Q ss_pred             -------------H-------------------HhhcCCCCCcEEEEEeCCCCC--CC-cccCHHHHHHHHHHhCCcEEE
Q 028292          111 -------------I-------------------DLYSTNQDCIKLLVGNKVDKE--SE-RVVSKKEGIDFAREYGCLFLE  155 (211)
Q Consensus       111 -------------~-------------------~~~~~~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~  155 (211)
                                   +                   ..+.....+|+++++||.|..  .. .....+.+.+++...+.++++
T Consensus       161 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~  240 (368)
T 2dby_A          161 LPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVV  240 (368)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEE
Confidence                         0                   001113348999999999842  22 123456677788888999999


Q ss_pred             eccCCCCCHH
Q 028292          156 CSAKTRVNVE  165 (211)
Q Consensus       156 ~Sa~~~~~v~  165 (211)
                      +||+.+.++.
T Consensus       241 iSAk~E~el~  250 (368)
T 2dby_A          241 VSARLEAELA  250 (368)
T ss_dssp             ECHHHHHHHH
T ss_pred             eechhHHHHH
Confidence            9988744333

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.59  E-value=9.2e-15  Score=114.01  Aligned_cols=153  Identities=17%  Similarity=0.120  Sum_probs=94.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccccc-------cccccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFR-------TLTSSY   81 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~   81 (211)
                      +...+|+++|.||||||||+|+|++... .....++++..  ...+.+.+  .+++|+||||...-.       ......
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            3457999999999999999999998764 33344444443  34455555  458889999953221       112234


Q ss_pred             ccCccEEEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCC--------CcccCHHHHHHHHHHhCCc
Q 028292           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKES--------ERVVSKKEGIDFAREYGCL  152 (211)
Q Consensus        82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~  152 (211)
                      ++.+|++++|+|+++|..-...   +...+... ......|.++++||.|...        ......++.......+.+.
T Consensus       147 i~~ad~il~vvD~~~p~~~~~~---i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt  223 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPLHHKQI---IEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN  223 (376)
T ss_dssp             HHHCSEEEEEEETTSHHHHHHH---HHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred             HHhcCccccccccCccHHHHHH---HHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence            6789999999999987432222   22223222 1134578889999999632        2345566666666666554


Q ss_pred             EEEeccCCCCCHHHHHH
Q 028292          153 FLECSAKTRVNVEQCFE  169 (211)
Q Consensus       153 ~~~~Sa~~~~~v~~~~~  169 (211)
                      --++-...+...+++.+
T Consensus       224 ~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          224 SAEIAFRCDATVDDLID  240 (376)
T ss_dssp             SEEEEECSCCCHHHHHH
T ss_pred             CCCeeecccCCHHHHHH
Confidence            33333344455555543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.57  E-value=1.1e-15  Score=118.79  Aligned_cols=104  Identities=16%  Similarity=0.117  Sum_probs=65.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK  139 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  139 (211)
                      .+.+.||||||.......   ....+|++++|+|++....+..+..      .    ..+.|.++|+||+|+.....+..
T Consensus       148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~------~----~~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK------G----LMEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH------H----HHHHCSEEEECCCCTTCHHHHHH
T ss_pred             CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH------h----hhcccCEEEEECCCCCChHHHHH
Confidence            357999999996543322   3578999999999976533211110      0    12467899999999854322211


Q ss_pred             --HHHHHHHHHh-------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          140 --KEGIDFAREY-------GCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       140 --~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                        ++........       ..+++++||++|.|+++++++|.+.+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence              1121211121       357899999999999999999998775

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.56  E-value=6.6e-16  Score=128.86  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=82.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC--CCC---------CC------CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT--FEE---------LS------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~--~~~---------~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (211)
                      ..||+|+|+.++|||||..+|+...  ...         +.      ...|.++......+....+.++|+||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            3589999999999999999997421  100         00      111344444445555566789999999999999


Q ss_pred             ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      ......++-+|++|+|+|+...-.-+.... |.. ..    ..++|.++++||+|...
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v-~~~-a~----~~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRIL-FHA-LR----KMGIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHHH-HHH-HH----HHTCSCEECCEECCSSS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHHH-HHH-HH----HcCCCeEEEEecccccc
Confidence            999999999999999999988644333222 333 22    35688999999999743

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=1.4e-13  Score=116.35  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=81.1

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCC--------CC---------CCCCcceeeeEEE--EEEEC-----CeEEEEE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT--------FE---------ELSPTIGVDFKIK--HVALG-----GKKMKLA   64 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--------~~---------~~~~~~~~~~~~~--~~~~~-----~~~~~~~   64 (211)
                      +.++.-||+|+|+.++|||||..+|+...        ..         ......|.++...  .+.+.     ...+.++
T Consensus         9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN   88 (709)
T 4fn5_A            9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN   88 (709)
T ss_dssp             CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred             chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence            44677899999999999999999997321        10         0111122222222  22222     2357899


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292           65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE  132 (211)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  132 (211)
                      |+||||+.+|.......++-+|++|+|+|+...-..+.... |.+..     ..++|.++++||+|..
T Consensus        89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~-----~~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQAN-----KYGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHH-----HHTCCEEEEEECSSST
T ss_pred             EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHH-----HcCCCeEEEEcccccc
Confidence            99999999999999999999999999999988754443332 43333     3679999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.50  E-value=4.7e-14  Score=118.51  Aligned_cols=159  Identities=18%  Similarity=0.135  Sum_probs=96.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccee-------------------------------------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV-------------------------------------------   47 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~-------------------------------------------   47 (211)
                      ....+|+|+|.+++|||||+|+|++..+-.......+                                           
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4567999999999999999999999765111110000                                           


Q ss_pred             -------eeEEEEEEE-CCeEEEEEEEeCCCccc-------------ccccccccc-cCccEEEEEEECCChhcHHHHHH
Q 028292           48 -------DFKIKHVAL-GGKKMKLAIWDTAGQER-------------FRTLTSSYY-RGAQGIIMVYDVTRRDTFTNLAD  105 (211)
Q Consensus        48 -------~~~~~~~~~-~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~  105 (211)
                             ......+.+ ......+.|+||||-..             +..+...++ ..+|++++|+|++......+...
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                   000011111 01112578999999432             112233333 57899999999987643333212


Q ss_pred             HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH--HHhC-CcEEEeccCCCCCHHHHHHHHHHH
Q 028292          106 IWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA--REYG-CLFLECSAKTRVNVEQCFEELVLK  174 (211)
Q Consensus       106 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~  174 (211)
                       +...+.    ..+.|+++|+||+|+...............  ...+ .+++.+||++|.|++++++.+.+.
T Consensus       209 -ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 -IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             -HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             -HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence             333332    467999999999999765443222111000  0112 257889999999999999999873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.47  E-value=1.9e-13  Score=104.35  Aligned_cols=97  Identities=21%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             cccccccccccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHH
Q 028292           71 QERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-KKEGIDFARE  148 (211)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~  148 (211)
                      ++++..+.+.++.++|++++|+|++++. ++..+.. |+..+.    ..++|+++|+||+|+.+...+. .++..+++..
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~----~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~  140 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYE----YFKVEPVIVFNKIDLLNEEEKKELERWISIYRD  140 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHH----HTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHH----hCCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence            5667777888999999999999999986 8876665 665554    3679999999999996544322 3455666777


Q ss_pred             hCCcEEEeccCCCCCHHHHHHHHH
Q 028292          149 YGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus       149 ~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      .+.+++++||++|.|+++++..+.
T Consensus       141 ~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          141 AGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHhhcc
Confidence            789999999999999999987753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.44  E-value=3.1e-13  Score=104.63  Aligned_cols=104  Identities=8%  Similarity=0.081  Sum_probs=63.9

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK  139 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  139 (211)
                      .+.+.|+||+|.....   ......+|.+++++|....+..+.+..    .+      ...|.++++||+|+........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i------~~~~~ivvlNK~Dl~~~~~~s~  213 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GI------FELADMIAVNKADDGDGERRAS  213 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----TH------HHHCSEEEEECCSTTCCHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HH------hccccEEEEEchhccCchhHHH
Confidence            3578999999964322   123467899999999865432211111    00      1245678889999744332222


Q ss_pred             HHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          140 KEGIDFARE----------YGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       140 ~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      ....++...          +..+++.+||+++.|++++++.|.+.+.
T Consensus       214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222233221          1357899999999999999999988764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.38  E-value=3.5e-13  Score=95.71  Aligned_cols=172  Identities=12%  Similarity=0.016  Sum_probs=98.9

Q ss_pred             CCCccccccCeeEEEEEEcCC-CCcHHHHHHHHhhCCC-C-------CCCCcceeeeEEEEEEECCe-E-----------
Q 028292            2 ASSTSQQEFDYLFKLLLIGDS-GVGKSTLLLSFTSDTF-E-------ELSPTIGVDFKIKHVALGGK-K-----------   60 (211)
Q Consensus         2 ~~~~~~~~~~~~~~i~v~G~~-~~GKstli~~l~~~~~-~-------~~~~~~~~~~~~~~~~~~~~-~-----------   60 (211)
                      +|.....-.....+++++|+. ..=+.+|+.++...+- .       ......|..   +.+.+++. .           
T Consensus         5 ~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsg---v~~~~~~~~~fni~tlys~~~   81 (227)
T 3l82_B            5 TSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSG---VNFQLNNQHKFNILILYSTTR   81 (227)
T ss_dssp             CCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCC---EEEESSSSCEEEEEECSCC--
T ss_pred             HHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccc---eEEEECCeeEEEEEEeccCcH
Confidence            455555556677899999985 2345689999987652 1       011111111   11111111 0           


Q ss_pred             --------------EEEEEEeCC------CcccccccccccccCccEEEEEEECCChhcHHHHHHHH---HHHHHhhcCC
Q 028292           61 --------------MKLAIWDTA------GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW---AKEIDLYSTN  117 (211)
Q Consensus        61 --------------~~~~i~D~~------g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~~~~~~~~  117 (211)
                                    -.+-....|      |+..++..|+.|+.++|++|||+|.+|.+.++ ....+   ..++......
T Consensus        82 ~er~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L  160 (227)
T 3l82_B           82 KERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGS  160 (227)
T ss_dssp             -----------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSC
T ss_pred             HHhhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhh
Confidence                          012223333      78888999999999999999999999986554 33323   2222221113


Q ss_pred             CCCcEEEEEeCC-CCCCCcccCHHHHHHHHH----HhCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          118 QDCIKLLVGNKV-DKESERVVSKKEGIDFAR----EYGCLFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       118 ~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      .++|++|++||. |+..  .....++.+...    ...+.+..|||++|+|+.+-++||.+.+..++
T Consensus       161 ~gapLLVlANKqqDlp~--Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          161 SGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             SCSCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             CCCeEEEEeCCCcCccC--CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            689999999995 6633  344444433221    23457899999999999999999988775443

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=102.54  Aligned_cols=88  Identities=23%  Similarity=0.204  Sum_probs=51.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQERFR   75 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   75 (211)
                      ..++|+++|.+|||||||+|+|++... ....+..+.+.....+.+.+.               ...+.+|||||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            457999999999999999999998765 222222222333334444332               2358999999976543


Q ss_pred             c-------cccccccCccEEEEEEECCChhc
Q 028292           76 T-------LTSSYYRGAQGIIMVYDVTRRDT   99 (211)
Q Consensus        76 ~-------~~~~~~~~~d~~ilv~d~~~~~s   99 (211)
                      .       .+..+++++|++++|+|+++.++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            2       44566789999999999986443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.27  E-value=1e-10  Score=91.84  Aligned_cols=85  Identities=24%  Similarity=0.273  Sum_probs=57.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQER-   73 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-   73 (211)
                      ...+|+++|++|||||||+|.|++.......  |....+.....+.+.+.               ...+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            4579999999999999999999997642222  22222333344445441               13588999999432 


Q ss_pred             ------ccccccccccCccEEEEEEECCC
Q 028292           74 ------FRTLTSSYYRGAQGIIMVYDVTR   96 (211)
Q Consensus        74 ------~~~~~~~~~~~~d~~ilv~d~~~   96 (211)
                            +...+...++++|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22234445688999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.23  E-value=7e-12  Score=93.30  Aligned_cols=109  Identities=9%  Similarity=-0.034  Sum_probs=74.7

Q ss_pred             CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHH---HHHHhhcCCCCCcEEEEEeC-CCCCCCcccCHHHHH
Q 028292           68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA---KEIDLYSTNQDCIKLLVGNK-VDKESERVVSKKEGI  143 (211)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK-~D~~~~~~~~~~~~~  143 (211)
                      .+|+..++..|+.|+.++|++|+|+|.+|.+.++ ....+.   .++.......++|++|++|| .|+..  .....++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            3567888999999999999999999999987654 222122   22322111368999999996 68743  33444433


Q ss_pred             HHHH----HhCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292          144 DFAR----EYGCLFLECSAKTRVNVEQCFEELVLKILDTP  179 (211)
Q Consensus       144 ~~~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~  179 (211)
                      +...    .....+..|||.+|+|+.+-++||.+.+..++
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            2221    13457899999999999999999999876543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.12  E-value=9.5e-12  Score=97.47  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=86.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC-----CCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD-----TFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSS   80 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   80 (211)
                      .+|+++|.+|+|||||+|+|++.     ......+.+|++.....+.+...   +.++||||.......        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~  239 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI  239 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence            57999999999999999999986     22334455566666666665543   789999994322211        111


Q ss_pred             cc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292           81 YY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSA  158 (211)
Q Consensus        81 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (211)
                      ++  ...+.++++++....-.+..+.     .+.... ..+.|+++++||.|..+...... ....+.+..+..+.+.++
T Consensus       240 ~~~~~~i~~~~~~l~~~~~~~~g~l~-----~l~~l~-~~~~~~~~v~~k~d~~~~~~~~~-~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          240 ITPKREIHPRVYQLNEGQTLFFGGLA-----RLDYIK-GGRRSFVCYMANELTVHRTKLEK-ADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTE-----EEEEEE-SSSEEEEEEECTTSCEEEEEGGG-HHHHHHHHBTTTBCSSCG
T ss_pred             HhcccccCceEEEEcCCceEEECCEE-----EEEEcc-CCCceEEEEecCCcccccccHHH-HHHHHHHhcCCccCCCCc
Confidence            12  5678999999884321111100     011112 46789999999999865544332 233455566666666665


Q ss_pred             CCCCCH
Q 028292          159 KTRVNV  164 (211)
Q Consensus       159 ~~~~~v  164 (211)
                      .+..++
T Consensus       313 ~~~~~~  318 (369)
T 3ec1_A          313 RYAAEF  318 (369)
T ss_dssp             GGTTTC
T ss_pred             hhhhhc
Confidence            544433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.01  E-value=4.9e-10  Score=88.63  Aligned_cols=140  Identities=19%  Similarity=0.236  Sum_probs=72.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCC---CCCcceeeeEEEEEEECCe--EEEEEEEeCCCcccc-------------
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEE---LSPTIGVDFKIKHVALGGK--KMKLAIWDTAGQERF-------------   74 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~-------------   74 (211)
                      .++++|+|++|+|||||++.|++..+..   .....+.......+.....  ...++++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            4679999999999999999999875421   1111222233333333222  246889999874211             


Q ss_pred             -cccc----cc---------cccCc--cE-EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 028292           75 -RTLT----SS---------YYRGA--QG-IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV  137 (211)
Q Consensus        75 -~~~~----~~---------~~~~~--d~-~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  137 (211)
                       ...+    ..         ....+  |+ ++++.|...+.+..++     ..+...  ..++|+|+|.||+|.....++
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-----eilk~L--~~~~~vI~Vi~KtD~Lt~~E~  194 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-----VTMKKL--DSKVNIIPIIAKADAISKSEL  194 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-----HHHHHT--CSCSEEEEEESCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-----HHHHHH--hhCCCEEEEEcchhccchHHH
Confidence             0001    00         11222  33 5556666554333332     222222  267999999999998544332


Q ss_pred             CH--HHHHHHHHHhCCcEEEeccC
Q 028292          138 SK--KEGIDFAREYGCLFLECSAK  159 (211)
Q Consensus       138 ~~--~~~~~~~~~~~~~~~~~Sa~  159 (211)
                      ..  ..+.+.....|++++.+|..
T Consensus       195 ~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          195 TKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHHHHcCCcEEecCCC
Confidence            11  11222233456777777753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.00  E-value=5.8e-10  Score=87.30  Aligned_cols=97  Identities=15%  Similarity=0.189  Sum_probs=72.8

Q ss_pred             CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH----HH
Q 028292           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI----DF  145 (211)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~  145 (211)
                      ..+.|...+..+.+.+|++++|+|++++.      ..|...+..+.  .++|+++|+||+|+.+.. ...+...    .+
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~  125 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYS  125 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHH
Confidence            34678888888888999999999999863      12555555544  479999999999996543 2333333    33


Q ss_pred             HHHhCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 028292          146 AREYGC---LFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       146 ~~~~~~---~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      +...+.   .++.+||++|.|++++++.|.+..
T Consensus       126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            566677   799999999999999999997765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.99  E-value=2.7e-11  Score=94.86  Aligned_cols=135  Identities=15%  Similarity=0.145  Sum_probs=78.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TS   79 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~   79 (211)
                      .+|+++|.+|+|||||+|+|++...      .......+++.....+.+...   +.++||||.......        ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            5799999999999999999998632      224455666666666665543   789999995332211        11


Q ss_pred             cc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292           80 SY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus        80 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      .+  ....+..+++++......+..+.     .+.... ..+.|+++++||.|..+.... ......+.+..+..+.+.+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~-----~~d~l~-~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA-----RFDYVS-GGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE-----EEEEEE-SSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE-----EEEEec-CCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence            11  35678888888874321111100     011112 467899999999998655433 2222334445565554444


Q ss_pred             c
Q 028292          158 A  158 (211)
Q Consensus       158 a  158 (211)
                      +
T Consensus       311 ~  311 (368)
T 3h2y_A          311 P  311 (368)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.99  E-value=6.1e-10  Score=90.13  Aligned_cols=151  Identities=13%  Similarity=0.108  Sum_probs=86.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHh------hCCC-----CCCCCcc-----------eeeeEEEEEE-------------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFT------SDTF-----EELSPTI-----------GVDFKIKHVA-------------   55 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~------~~~~-----~~~~~~~-----------~~~~~~~~~~-------------   55 (211)
                      .....|+++|.+||||||++++|.      +.+.     +.+.+..           +..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998      3322     1111111           0111110000             


Q ss_pred             ECCeEEEEEEEeCCCcccccc-cccc---c--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEeC
Q 028292           56 LGGKKMKLAIWDTAGQERFRT-LTSS---Y--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNK  128 (211)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK  128 (211)
                      .....+.+.|+||||...... .+..   .  +..+|.+++|+|+.........    ...+..     .+|+ .+|+||
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~-----~~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD-----KVDVASVIVTK  249 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH-----HHCCCCEEEEC
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh-----hcCceEEEEeC
Confidence            000335789999999653221 1110   1  1268999999999876432221    122221     2564 889999


Q ss_pred             CCCCCCcccCHHHHHHHHHHhCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q 028292          129 VDKESERVVSKKEGIDFAREYGCLF------------------LECSAKTRVN-VEQCFEELVLK  174 (211)
Q Consensus       129 ~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~~~~i~~~  174 (211)
                      .|.......    +.......++|+                  +.+|+..|.| +.++++++.+.
T Consensus       250 ~D~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CccccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            998533221    222334445443                  3468889999 99988888766

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.96  E-value=3.5e-09  Score=83.71  Aligned_cols=162  Identities=17%  Similarity=0.128  Sum_probs=87.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCC-Ccceee--eEEEEEEECCeEEEEEEEeCCCccccccc-----ccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELS-PTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRTL-----TSSYY   82 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~-~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~   82 (211)
                      ....|+|+|++|+|||||+|.+.+.... ... ...+..  ........ .....+++||++|-......     ....+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            3458999999999999999999984321 110 011111  11111111 11124788999984321111     11123


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-------CCcccCHHHHH----HHH----H
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVSKKEGI----DFA----R  147 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~~----~~~----~  147 (211)
                      ...+..++ ++....+   .....+...+.    ..++|+++|.||.|+.       ........+..    ++.    .
T Consensus       147 ~~~~~~~~-lS~G~~~---kqrv~la~aL~----~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~  218 (413)
T 1tq4_A          147 YEYDFFII-ISATRFK---KNDIDIAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  218 (413)
T ss_dssp             GGCSEEEE-EESSCCC---HHHHHHHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCCcc---HHHHHHHHHHH----hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            34455554 7765321   11111222222    2468999999999962       22222333322    332    1


Q ss_pred             HhC---CcEEEecc--CCCCCHHHHHHHHHHHHHcCCCcc
Q 028292          148 EYG---CLFLECSA--KTRVNVEQCFEELVLKILDTPSLL  182 (211)
Q Consensus       148 ~~~---~~~~~~Sa--~~~~~v~~~~~~i~~~~~~~~~~~  182 (211)
                      +.+   ..++.+|+  ..+.|++++.+.+.+.+.+.+..+
T Consensus       219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~  258 (413)
T 1tq4_A          219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN  258 (413)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred             hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence            222   36788999  666679999999998886655433

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.96  E-value=2.3e-09  Score=80.40  Aligned_cols=137  Identities=20%  Similarity=0.166  Sum_probs=72.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------Ccce-eeeEEEEEEECCeE--EEEEEEeCCCcccc-------c
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-------PTIG-VDFKIKHVALGGKK--MKLAIWDTAGQERF-------R   75 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~--~~~~i~D~~g~~~~-------~   75 (211)
                      .++++|+|++|+|||||++.|++.......       +... .......+......  ..++++|++|....       .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            489999999999999999999975431100       0000 01112222222222  36789999982110       0


Q ss_pred             c---------------------cccccccCccEEEEEEECC-ChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           76 T---------------------LTSSYYRGAQGIIMVYDVT-RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        76 ~---------------------~~~~~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .                     .-+..+..+++.++++|.. .+-.-.+. . ++..+.    .. +++++|.+|+|...
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~-~-~l~~L~----~~-~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL-E-FMKHLS----KV-VNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH-H-HHHHHH----TT-SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH-H-HHHHHH----hc-CcEEEEEeccccCC
Confidence            0                     0011234568889999965 33222221 1 233332    23 89999999999854


Q ss_pred             CcccC--HHHHHHHHHHhCCcEEEe
Q 028292          134 ERVVS--KKEGIDFAREYGCLFLEC  156 (211)
Q Consensus       134 ~~~~~--~~~~~~~~~~~~~~~~~~  156 (211)
                      ..+..  ..........+++.+|+.
T Consensus       155 ~~e~~~~k~~i~~~l~~~~i~i~~~  179 (270)
T 3sop_A          155 LEEKSEFKQRVRKELEVNGIEFYPQ  179 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHcCccccCC
Confidence            43321  223334455667776653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.87  E-value=1.8e-09  Score=81.44  Aligned_cols=59  Identities=27%  Similarity=0.394  Sum_probs=37.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (211)
                      ...++|+++|.+|||||||+|+|.+.......+.+|++.....+.+..   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            456899999999999999999999887656666666665554444433   57899999953

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.86  E-value=1.6e-09  Score=84.80  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----H
Q 028292           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID----F  145 (211)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~  145 (211)
                      .++.|...+..++..++++++|+|++++.+.      |...+..+.  .++|+++|+||+|+.+.. ...+...+    +
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s------~~~~l~~~l--~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~  127 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS------FIPGLPRFA--ADNPILLVGNKADLLPRS-VKYPKLLRWMRRM  127 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGGG------CCSSHHHHC--TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCCc------hhhHHHHHh--CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHH
Confidence            3677888888888899999999999998631      333333333  478999999999996543 22333333    3


Q ss_pred             HHHhCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          146 AREYGC---LFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       146 ~~~~~~---~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      +...+.   .++.+||++|.|++++++.+.+...
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            555666   6899999999999999999987653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=6.2e-09  Score=78.53  Aligned_cols=102  Identities=13%  Similarity=0.034  Sum_probs=69.2

Q ss_pred             EeCCCcc-cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 028292           66 WDTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID  144 (211)
Q Consensus        66 ~D~~g~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  144 (211)
                      -..||+. .........+.++|+++.|+|+.+|.+....      .+..+.  .++|.++|+||+|+.+...  .+...+
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~------~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~~~~   73 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP------MIEDIL--KNKPRIMLLNKADKADAAV--TQQWKE   73 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHC--SSSCEEEEEECGGGSCHHH--HHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH------HHHHHH--CCCCEEEEEECcccCCHHH--HHHHHH
Confidence            3578875 3334556678999999999999999766421      111111  5799999999999965211  222334


Q ss_pred             HHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          145 FAREYGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       145 ~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      +....+.+++.+||+++.|+++++..+.+.+.+
T Consensus        74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            445567899999999999999999988887653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.79  E-value=1.9e-09  Score=80.51  Aligned_cols=57  Identities=23%  Similarity=0.356  Sum_probs=37.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (211)
                      ++|+++|.+|+|||||+|+|.+.......++.|++.....+.+..   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            699999999999999999999877655666666655444343332   578999999543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.56  E-value=9.4e-08  Score=76.00  Aligned_cols=140  Identities=18%  Similarity=0.167  Sum_probs=77.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC------CC-----CCCCC-----------cceeeeEEEEEEEC------------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD------TF-----EELSP-----------TIGVDFKIKHVALG------------   57 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~~~~~------------   57 (211)
                      ++..|+++|.+|+||||++..|...      +.     +.+.+           ..+..+.......+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999741      11     11111           01111110000000            


Q ss_pred             -CeEEEEEEEeCCCcccccccc----c--ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           58 -GKKMKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        58 -~~~~~~~i~D~~g~~~~~~~~----~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                       ...+.+.|+||+|........    .  ......|.+++|+|+..........    ..+..    .-.+..+|+||.|
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~----~~~i~gVIlTKlD  250 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKE----ATPIGSIIVTKLD  250 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHH----SCTTEEEEEECCS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHh----hCCCeEEEEECCC
Confidence             012568899999954322111    0  1123568999999998764432222    22221    2234568999999


Q ss_pred             CCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292          131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      .....    -.+.......++|+.+++.  |++++
T Consensus       251 ~~~~g----G~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          251 GSAKG----GGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             SCSSH----HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             Ccccc----cHHHHHHHHHCCCEEEEEc--CCChH
Confidence            74332    2344455567888877775  55443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.45  E-value=1.1e-07  Score=72.26  Aligned_cols=90  Identities=13%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHhCCcE
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGIDFAREYGCLF  153 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  153 (211)
                      .+.+..+.++|.+++|+|+.+|..-......++....    ..++|.++|+||+|+.+....  ..+.........+.++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3444567899999999999987644333332433333    468899999999999665321  1233445555678899


Q ss_pred             EEeccCCCCCHHHHHH
Q 028292          154 LECSAKTRVNVEQCFE  169 (211)
Q Consensus       154 ~~~Sa~~~~~v~~~~~  169 (211)
                      +.+||.++.|+++++.
T Consensus       154 ~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EECCHHHHTTCTTTGG
T ss_pred             EEEecCCCCCHHHHHh
Confidence            9999998888776543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.38  E-value=2.7e-07  Score=76.00  Aligned_cols=63  Identities=19%  Similarity=0.152  Sum_probs=39.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcc-eeeeEEEEE--EE-CCeEEEEEEEeCCCccc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTI-GVDFKIKHV--AL-GGKKMKLAIWDTAGQER   73 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~   73 (211)
                      .+.++|+|+|.+|+|||||+|+|++.... ....++ +.+......  .+ ......+.|+||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            46789999999999999999999987642 222211 222221111  11 12234688999999543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.37  E-value=1.7e-07  Score=69.95  Aligned_cols=93  Identities=15%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             CCCcccc-cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 028292           68 TAGQERF-RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA  146 (211)
Q Consensus        68 ~~g~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  146 (211)
                      .||+... .......+.++|+++.|+|+.+|.+....      .+. +  . ++|.++|+||+|+.+...  .+...++.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l--l-~k~~iivlNK~DL~~~~~--~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F--S-RKETIILLNKVDIADEKT--TKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C--T-TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h--c-CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence            3665422 23455667899999999999998665321      111 1  1 799999999999965321  22233445


Q ss_pred             HHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292          147 REYGCLFLECSAKTRVNVEQCFEELVL  173 (211)
Q Consensus       147 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~  173 (211)
                      ...+.++ .+||+++.|+++++..+..
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            5667888 9999999999998877644

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.30  E-value=7.3e-07  Score=71.06  Aligned_cols=132  Identities=19%  Similarity=0.142  Sum_probs=72.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC------CC-----CCCCCc-----------ceeeeEEE--------EE----EECC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD------TF-----EELSPT-----------IGVDFKIK--------HV----ALGG   58 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~------~~-----~~~~~~-----------~~~~~~~~--------~~----~~~~   58 (211)
                      ...|+++|.+|+||||+++.|...      +.     +.+.+.           .+..+...        .+    .-..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            467999999999999999999762      11     111000           00000000        00    0001


Q ss_pred             eEEEEEEEeCCCccccccc-c-----cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCC-c-EEEEEeCCC
Q 028292           59 KKMKLAIWDTAGQERFRTL-T-----SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC-I-KLLVGNKVD  130 (211)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~-~-----~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D  130 (211)
                      ..+.+.|+||||....... .     ...+..+|.+++|+|+.....   ... .   ...+.  ... | ..+|+||.|
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~---~~~~~--~~~~~i~gvVlnK~D  249 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-Q---AKAFK--EAVGEIGSIIVTKLD  249 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-H---HHHHH--TTSCSCEEEEEECSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-H---HHHHh--hcccCCeEEEEeCCC
Confidence            3356899999996542211 1     111236899999999876542   111 1   12222  234 5 788999999


Q ss_pred             CCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292          131 KESERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      .....    ..+.......+.++..++
T Consensus       250 ~~~~~----g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          250 GSAKG----GGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             SCSTT----HHHHHHHHHSSCCEEEEC
T ss_pred             Cccch----HHHHHHHHHHCCCEEEee
Confidence            74321    223445666777776653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.26  E-value=2.8e-07  Score=73.28  Aligned_cols=139  Identities=20%  Similarity=0.209  Sum_probs=77.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC------CC-----CCCCC-----------cceeeeEEEEE-------------EE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD------TF-----EELSP-----------TIGVDFKIKHV-------------AL   56 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~~-------------~~   56 (211)
                      ....|+++|++|+||||++..|...      +.     +.+.+           ..+........             ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            4567889999999999999999731      11     11100           00111100000             00


Q ss_pred             CCeEEEEEEEeCCCccc--ccc----cccc--cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           57 GGKKMKLAIWDTAGQER--FRT----LTSS--YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        57 ~~~~~~~~i~D~~g~~~--~~~----~~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                      ....+.+.|+||||...  ...    ....  .....+.+++|+|+...........    .+..    .-.+..+|+||
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~----~f~~----~~~~~gVIlTK  247 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS----RFHQ----ASPIGSVIITK  247 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH----HHHH----HCSSEEEEEEC
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH----HHhc----ccCCcEEEEec
Confidence            11235688999999544  111    1111  1124589999999987644333222    2221    11346789999


Q ss_pred             CCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292          129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus       129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      .|....    .-.+.......+.|+.+++.  |+++
T Consensus       248 lD~~a~----~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          248 MDGTAK----GGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             GGGCSC----HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             cccccc----chHHHHHHHHHCCCEEEEEC--CCCh
Confidence            997432    23345556667899887775  6554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.21  E-value=6.5e-07  Score=67.93  Aligned_cols=92  Identities=18%  Similarity=0.191  Sum_probs=54.9

Q ss_pred             EEEEEEEeCCCccc--ccc-ccc-----ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCC
Q 028292           60 KMKLAIWDTAGQER--FRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVD  130 (211)
Q Consensus        60 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D  130 (211)
                      .+.+.|+||||...  ... ...     .....+|.+++|+|+......   .. ....+.     ...| ..+|+||.|
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~-~~~~~~-----~~~~i~gvVlnk~D  250 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YD-LASKFN-----QASKIGTIIITKMD  250 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HH-HHHHHH-----HTCTTEEEEEECGG
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HH-HHHHHH-----hhCCCCEEEEeCCC
Confidence            35689999999765  211 111     123468999999998754222   11 111121     1244 678899999


Q ss_pred             CCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292          131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ....    ...+.......++|+..++  .|+++++
T Consensus       251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          251 GTAK----GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             CCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            6432    2344556677788888776  5666544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.10  E-value=3.1e-06  Score=70.48  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .|+|+|++|||||||++.+.+..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.01  E-value=1.6e-05  Score=61.72  Aligned_cols=85  Identities=20%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHhCCcEEEeccC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-SKKEGIDFAREYGCLFLECSAK  159 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~  159 (211)
                      .+.++|.+++|... .|..-....+.++....    ..++|.++|+||+|+.+.... ..+.........|.+++.+||.
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH  201 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence            46789999988665 56433333332433332    356788999999999654321 0122333445668899999999


Q ss_pred             CCCCHHHHHHH
Q 028292          160 TRVNVEQCFEE  170 (211)
Q Consensus       160 ~~~~v~~~~~~  170 (211)
                      ++.|++++...
T Consensus       202 ~~~gl~~L~~~  212 (358)
T 2rcn_A          202 TQDGLKPLEEA  212 (358)
T ss_dssp             TTBTHHHHHHH
T ss_pred             CCcCHHHHHHh
Confidence            99999987654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.00  E-value=5.8e-06  Score=63.57  Aligned_cols=141  Identities=14%  Similarity=0.210  Sum_probs=74.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCC-----------cceeeeEEEEEEEC------------
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSP-----------TIGVDFKIKHVALG------------   57 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~-----------~~~~~~~~~~~~~~------------   57 (211)
                      ..--|+++|++|+||||+++.|.+...           +.+..           ..+..+........            
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            456789999999999999999985311           00000           00000000000000            


Q ss_pred             -CeEEEEEEEeCCCcccccccccc------cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           58 -GKKMKLAIWDTAGQERFRTLTSS------YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        58 -~~~~~~~i~D~~g~~~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                       ...+.+.++|++|..........      ..-..|-.++++|......   +.. ....+..   ..+ .-.+++||.|
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~-~~~~~~~---~~~-it~iilTKlD  279 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVE-QARQFNE---AVK-IDGIILTKLD  279 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHH-HHHHHHH---HSC-CCEEEEECGG
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHH-HHHHHHH---hcC-CCEEEEeCcC
Confidence             01133567899996432211100      1123678899999776532   222 1222221   112 2367889999


Q ss_pred             CCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292          131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ....    .-.+.......+.|+..++  +|+++++
T Consensus       280 ~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          280 ADAR----GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             GCSC----CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             Cccc----hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            6322    2234566777889888877  6665543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.96  E-value=2.2e-07  Score=75.05  Aligned_cols=101  Identities=14%  Similarity=0.070  Sum_probs=56.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccc--------cc
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FRTLT--------SS   80 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~~   80 (211)
                      ...+.|+++|.+|+||||+.++|.........++.+...........+......+||..|...  ....+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999999998643211112211100000000011112345788888632  22222        44


Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHh
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL  113 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~  113 (211)
                      ++...++.++|+|.++. +.+.... |...+..
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~  147 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQ  147 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHh
Confidence            55567888999999987 3444333 5555543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.90  E-value=1.1e-05  Score=64.41  Aligned_cols=26  Identities=19%  Similarity=0.103  Sum_probs=22.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+..-|.|+|.+++|||+|+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            46677899999999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.76  E-value=0.00014  Score=58.00  Aligned_cols=132  Identities=20%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHh-------hCCC-----CCCCCc-----------ceeeeEEEE------------E-E
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFT-------SDTF-----EELSPT-----------IGVDFKIKH------------V-A   55 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~-------~~~~-----~~~~~~-----------~~~~~~~~~------------~-~   55 (211)
                      ....|+++|.+|+||||+...|.       +.+.     +.+.+.           .+.++....            + .
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            45678888999999999999987       2221     111111           010100000            0 0


Q ss_pred             ECCeEEEEEEEeCCCcccccc-ccc-----ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeC
Q 028292           56 LGGKKMKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNK  128 (211)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK  128 (211)
                      .....+.+.|+||||...... ...     ..+...+.+++|+|+.........    ...+..     ..+ .-+|+||
T Consensus       179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~-----~l~i~gvVlnK  249 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE-----ALPLTGVVLTK  249 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH-----HSCCCCEEEEC
T ss_pred             HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc-----cCCCeEEEEec
Confidence            001235689999999644321 111     113367889999998765432221    112221     223 2468999


Q ss_pred             CCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292          129 VDKESERVVSKKEGIDFAREYGCLFLEC  156 (211)
Q Consensus       129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .|.....    ..+.......+.|+..+
T Consensus       250 ~D~~~~~----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          250 VDGDARG----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             TTSSSCC----THHHHHHHHHCCCEEEE
T ss_pred             CCCCccH----HHHHHHHHHHCCCeEEE
Confidence            9974322    13334555566664443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.60  E-value=3.6e-05  Score=53.85  Aligned_cols=24  Identities=33%  Similarity=0.688  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .+++++|++|+|||||++.+.+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999998753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.48  E-value=4.2e-05  Score=58.15  Aligned_cols=23  Identities=39%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|||||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            78999999999999999998754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.45  E-value=7.3e-05  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.610  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5889999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.42  E-value=8.2e-05  Score=52.92  Aligned_cols=21  Identities=48%  Similarity=0.643  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .++|+|++|+|||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999986

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.32  E-value=0.00012  Score=51.98  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -|+++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.32  E-value=0.00047  Score=52.37  Aligned_cols=22  Identities=45%  Similarity=0.652  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57899999999999999999 54

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.30  E-value=0.00013  Score=51.22  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -.|+|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.29  E-value=0.00061  Score=54.11  Aligned_cols=85  Identities=19%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCcccccc-ccc-----ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           61 MKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      +.+.|+||||...... ...     ...-..|.+++|+|+.....   ... ....+...   .+ ..-+|+||.|....
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~-~a~~f~~~---l~-i~GVIlTKlD~~~~  252 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALS-VARAFDEK---VG-VTGLVLTKLDGDAR  252 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHH-HHHHHHHH---TC-CCEEEEESGGGCSS
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHH-HHHHHHhc---CC-ceEEEEeCcCCccc
Confidence            5688999999643321 111     11225788899999875422   222 11222211   11 24578899996322


Q ss_pred             cccCHHHHHHHHHHhCCcEEEec
Q 028292          135 RVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      .    ..+.......+.|+.++.
T Consensus       253 ~----g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          253 G----GAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             C----HHHHHHHHHHCCCEEEEE
T ss_pred             H----HHHHHHHHHHCCCEEEEe
Confidence            2    234455667788877665

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.29  E-value=0.00014  Score=52.56  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      --++|+|++|||||||++.|.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            35789999999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.28  E-value=0.00014  Score=52.01  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++|+|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.24  E-value=0.00017  Score=52.07  Aligned_cols=22  Identities=41%  Similarity=0.709  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|+|++|+|||||++.|.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5889999999999999999874

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.22  E-value=0.00019  Score=50.45  Aligned_cols=21  Identities=43%  Similarity=0.705  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+|+|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.22  E-value=0.00015  Score=50.19  Aligned_cols=20  Identities=45%  Similarity=0.590  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028292           15 KLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~   34 (211)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.21  E-value=0.00021  Score=48.94  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.20  E-value=0.00023  Score=50.52  Aligned_cols=25  Identities=40%  Similarity=0.490  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..--|+|+|++|+|||||++.|...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3345889999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.20  E-value=0.0002  Score=51.23  Aligned_cols=24  Identities=38%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      --|+|+|++|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358899999999999999998753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.16  E-value=0.00022  Score=50.97  Aligned_cols=26  Identities=31%  Similarity=0.267  Sum_probs=22.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .....|+|+|++|+|||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.15  E-value=0.00036  Score=49.97  Aligned_cols=86  Identities=9%  Similarity=0.045  Sum_probs=52.3

Q ss_pred             EEEEEEEeCCCc-ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 028292           60 KMKLAIWDTAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS  138 (211)
Q Consensus        60 ~~~~~i~D~~g~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  138 (211)
                      .+.+.|+|+|+. ..  ......+..+|.+|++...+ ..+...+.. +...+....   +.++.+|+|+.|.....  .
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~-~~~~l~~~~---~~~~~vv~N~~~~~~~~--~  137 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALML-TIETLQKLG---NNRFRILLTIIPPYPSK--D  137 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHH-HHHHHHHTC---SSSEEEEECSBCCTTSC--H
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHH-HHHHHHhcc---CCCEEEEEEecCCccch--H
Confidence            356889999985 32  23344566789999999875 344444444 444444322   56688999999863301  1


Q ss_pred             HHHHHHHHHHhCCcEE
Q 028292          139 KKEGIDFAREYGCLFL  154 (211)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (211)
                      .++..+...+++.+++
T Consensus       138 ~~~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          138 GDEARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHHcCCchh
Confidence            3445555555666554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.15  E-value=0.00023  Score=52.08  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998744

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.11  E-value=0.00028  Score=49.53  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .++++|++|+|||||++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.10  E-value=0.00026  Score=51.33  Aligned_cols=23  Identities=43%  Similarity=0.476  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.09  E-value=0.0003  Score=50.10  Aligned_cols=25  Identities=40%  Similarity=0.566  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...-|+|+|++|||||||++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999999753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.09  E-value=0.00035  Score=49.59  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=23.2

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ......+.|+|.|.+||||||+.+.|..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445667899999999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.08  E-value=0.00031  Score=51.53  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.07  E-value=0.00033  Score=48.35  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..|+|+|++|||||||.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.07  E-value=0.00032  Score=54.41  Aligned_cols=23  Identities=39%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|++|||||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58899999999999999999754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.06  E-value=0.00032  Score=49.82  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ..|+|+|++|||||||++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.05  E-value=0.00033  Score=50.42  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.05  E-value=0.00032  Score=49.45  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.04  E-value=0.00033  Score=52.07  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.04  E-value=0.00045  Score=47.88  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.03  E-value=0.00037  Score=49.46  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      -.|+|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.03  E-value=0.00035  Score=52.32  Aligned_cols=23  Identities=39%  Similarity=0.603  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998744

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.02  E-value=0.00034  Score=48.73  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -.++++|++|+|||||++.+.+.-
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.02  E-value=0.00038  Score=47.89  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHH
Q 028292           14 FKLLLIGDSGVGKSTLLLSF   33 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l   33 (211)
                      +.|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.01  E-value=0.00041  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~   34 (211)
                      ...|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.01  E-value=0.00036  Score=51.73  Aligned_cols=23  Identities=43%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.01  E-value=0.0004  Score=50.80  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.01  E-value=0.00044  Score=49.38  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ....|+|+|++|||||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999863

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.00  E-value=0.00042  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999954

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.99  E-value=0.00039  Score=51.67  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999998753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.99  E-value=0.00046  Score=47.43  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.98  E-value=0.00038  Score=51.83  Aligned_cols=23  Identities=43%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999999753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.98  E-value=0.00044  Score=49.61  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.98  E-value=0.00045  Score=50.72  Aligned_cols=23  Identities=30%  Similarity=0.327  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.98  E-value=0.00046  Score=50.22  Aligned_cols=23  Identities=30%  Similarity=0.601  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.98  E-value=0.00046  Score=49.38  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.97  E-value=0.00041  Score=51.34  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.97  E-value=0.00041  Score=50.84  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.97  E-value=0.00046  Score=50.84  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.97  E-value=0.00038  Score=49.85  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++++|+.|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.97  E-value=0.00043  Score=51.05  Aligned_cols=23  Identities=48%  Similarity=0.635  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.96  E-value=0.00043  Score=51.40  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|+|++|+|||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999999863

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.96  E-value=0.00059  Score=47.88  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ....|+|.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999975

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.96  E-value=0.00062  Score=47.51  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ....|++.|.+||||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999974

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.95  E-value=0.00045  Score=48.07  Aligned_cols=25  Identities=44%  Similarity=0.554  Sum_probs=21.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .....|++.|.+|+||||+.+.|..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3456799999999999999999974

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.94  E-value=0.00047  Score=50.86  Aligned_cols=22  Identities=41%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.94  E-value=0.00068  Score=48.09  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .+...|+|.|.+||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999874

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.94  E-value=0.00064  Score=49.87  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=22.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...++|+|.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999974

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.93  E-value=0.00064  Score=47.02  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|+++|++||||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.93  E-value=0.00049  Score=51.28  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.93  E-value=0.00054  Score=47.61  Aligned_cols=23  Identities=35%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-++++|++|+|||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45789999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.93  E-value=0.00053  Score=51.45  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.92  E-value=0.00058  Score=48.41  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .-.|+++|++||||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999999974

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.92  E-value=0.00053  Score=50.88  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999999974

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.91  E-value=0.00054  Score=51.97  Aligned_cols=22  Identities=36%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6889999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.89  E-value=0.00052  Score=50.72  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.89  E-value=0.00056  Score=48.54  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.89  E-value=0.00057  Score=51.03  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|++|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.89  E-value=0.00058  Score=48.49  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|+|+|.+||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.88  E-value=0.00061  Score=48.19  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999976

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.88  E-value=0.0005  Score=52.18  Aligned_cols=24  Identities=38%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      .++++|++|+|||||+|.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999997543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.88  E-value=0.00054  Score=51.05  Aligned_cols=23  Identities=43%  Similarity=0.547  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.88  E-value=0.00062  Score=47.16  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999863

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.87  E-value=0.00062  Score=49.13  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999975

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.86  E-value=0.00074  Score=47.28  Aligned_cols=22  Identities=36%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.85  E-value=0.00078  Score=47.91  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.85  E-value=0.00036  Score=50.71  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh-hC
Q 028292           15 KLLLIGDSGVGKSTLLLSFT-SD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~-~~   36 (211)
                      -|+|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58899999999999999999 54

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.85  E-value=0.00068  Score=50.39  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.84  E-value=0.00066  Score=48.68  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.84  E-value=0.00086  Score=51.12  Aligned_cols=27  Identities=26%  Similarity=0.186  Sum_probs=23.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .....-|+|+|++|||||||++.|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            445678999999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.84  E-value=0.00076  Score=49.69  Aligned_cols=29  Identities=21%  Similarity=0.211  Sum_probs=21.8

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +....+.+.|+|.|.+||||||+.+.|..
T Consensus        16 ~~~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           16 QPNGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34445678899999999999999998865

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.83  E-value=0.001  Score=46.55  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .....|++.|.+|+||||+.+.|...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34577999999999999999998753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.83  E-value=0.00094  Score=47.55  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=23.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ......|+|+|.+|+|||||.+.|.+.
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            334568999999999999999999874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.82  E-value=0.00071  Score=48.32  Aligned_cols=25  Identities=24%  Similarity=0.125  Sum_probs=21.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .+...|+|.|.+||||||+.+.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999975

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.82  E-value=0.00085  Score=47.52  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.82  E-value=0.0007  Score=48.02  Aligned_cols=25  Identities=32%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..-.|+|+|++|+|||||.+.|.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.81  E-value=0.00067  Score=48.96  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999873

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.81  E-value=0.00099  Score=47.99  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=19.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +.--|+|+|+|||||+|...+|..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            333467789999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.80  E-value=0.00089  Score=47.71  Aligned_cols=24  Identities=21%  Similarity=0.012  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ....|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999975

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.80  E-value=0.0008  Score=48.96  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ....+|+|+|.+||||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999974

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.80  E-value=0.00077  Score=48.52  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.79  E-value=0.00053  Score=46.37  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998744

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.78  E-value=0.00086  Score=46.89  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...+|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.78  E-value=0.00085  Score=46.92  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.77  E-value=0.001  Score=46.68  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.77  E-value=0.00093  Score=50.33  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ....-|++.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999975

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.76  E-value=0.00078  Score=50.38  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.76  E-value=0.00083  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +...|+|.|.+||||||+.+.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999974

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.75  E-value=0.001  Score=47.32  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36799999999999999999975

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.75  E-value=0.00076  Score=52.32  Aligned_cols=23  Identities=43%  Similarity=0.637  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999999854

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.75  E-value=0.00097  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.74  E-value=0.00047  Score=47.79  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|.|+|++|+|||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999874

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.74  E-value=0.00078  Score=52.50  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .-+++|+|++|+|||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.73  E-value=0.0011  Score=50.59  Aligned_cols=26  Identities=23%  Similarity=0.230  Sum_probs=22.7

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...++-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44678899999999999999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.72  E-value=0.00088  Score=50.50  Aligned_cols=23  Identities=30%  Similarity=0.601  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999998753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.72  E-value=0.00094  Score=51.87  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+|+|++|+|||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999999863

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.71  E-value=0.00089  Score=51.89  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999999754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.70  E-value=0.0011  Score=48.57  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ....|.|+|+.|||||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999999976

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.69  E-value=0.00097  Score=49.09  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.69  E-value=0.00081  Score=48.48  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.69  E-value=0.0011  Score=45.39  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999975

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.69  E-value=0.0011  Score=45.97  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.68  E-value=0.00095  Score=51.84  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            46899999999999999999753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.68  E-value=0.0022  Score=42.87  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            346999999999999999988754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.68  E-value=0.00069  Score=51.45  Aligned_cols=22  Identities=45%  Similarity=0.560  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5889999999999999999874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.67  E-value=0.0013  Score=46.49  Aligned_cols=27  Identities=26%  Similarity=0.204  Sum_probs=22.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..+...|+|.|.+||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            345678999999999999999999865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.67  E-value=0.00099  Score=51.79  Aligned_cols=23  Identities=43%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46899999999999999999754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.67  E-value=0.001  Score=52.06  Aligned_cols=23  Identities=39%  Similarity=0.535  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999999754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.67  E-value=0.0013  Score=47.15  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +.+.|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999975

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.67  E-value=0.001  Score=46.02  Aligned_cols=21  Identities=38%  Similarity=0.581  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.66  E-value=0.0013  Score=48.81  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999975

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.66  E-value=0.0011  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.66  E-value=0.001  Score=51.68  Aligned_cols=23  Identities=39%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            46899999999999999999754

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.65  E-value=0.0046  Score=49.32  Aligned_cols=62  Identities=23%  Similarity=0.242  Sum_probs=38.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh------------------CCCC----CCCCcceeeeEEEEE--E-ECCeEEEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS------------------DTFE----ELSPTIGVDFKIKHV--A-LGGKKMKLAI   65 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~------------------~~~~----~~~~~~~~~~~~~~~--~-~~~~~~~~~i   65 (211)
                      .+..-|.|+|..++|||+|+|.|++                  ..|.    ....|.|.-.....+  . -++....+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            3566777999999999999996642                  1121    111233332222111  1 1566788999


Q ss_pred             EeCCCcc
Q 028292           66 WDTAGQE   72 (211)
Q Consensus        66 ~D~~g~~   72 (211)
                      +||.|..
T Consensus       145 lDTEG~~  151 (457)
T 4ido_A          145 MDTQGTF  151 (457)
T ss_dssp             EEECCBT
T ss_pred             EeccCCC
Confidence            9999944

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.64  E-value=0.0011  Score=47.67  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .++|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.64  E-value=0.0012  Score=45.51  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..|.++|.+|+|||||+.+|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999999863

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.63  E-value=0.0011  Score=51.82  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            46899999999999999999754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.63  E-value=0.0011  Score=51.72  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.61  E-value=0.001  Score=46.77  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +...|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.61  E-value=0.0011  Score=50.24  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .-.|+++|++|||||||++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34788999999999999999974

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.60  E-value=0.0012  Score=50.08  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..--++++|++||||||+++.+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345788999999999999999975

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.60  E-value=0.001  Score=49.04  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ......|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.60  E-value=0.0011  Score=50.87  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|++|+|||||++.+.+.-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.59  E-value=0.0017  Score=48.98  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=22.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ......|+|.|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.59  E-value=0.0016  Score=46.24  Aligned_cols=25  Identities=28%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .....|+|+|.+|+|||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.58  E-value=0.0016  Score=49.51  Aligned_cols=26  Identities=23%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .....|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999873

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.58  E-value=0.0013  Score=51.43  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+|+|++|+|||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.58  E-value=0.00086  Score=46.62  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=16.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999974

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.56  E-value=0.0009  Score=51.76  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999999754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.55  E-value=0.0012  Score=50.79  Aligned_cols=24  Identities=38%  Similarity=0.527  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -.++++|++|+|||||++.+.+..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            358999999999999999998743

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.55  E-value=0.0012  Score=51.34  Aligned_cols=22  Identities=27%  Similarity=0.670  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|+|++|+|||||++.+.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999999974

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.53  E-value=0.0013  Score=52.10  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .|+|+|++|+|||||++.+++.-
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999998743

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.51  E-value=0.0015  Score=48.84  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.51  E-value=0.0015  Score=48.17  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.49  E-value=0.0017  Score=45.48  Aligned_cols=21  Identities=24%  Similarity=0.272  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.47  E-value=0.0013  Score=45.47  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.|+|.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.47  E-value=0.0015  Score=51.30  Aligned_cols=22  Identities=45%  Similarity=0.656  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.47  E-value=0.0015  Score=53.21  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .|+|+|++|||||||++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            59999999999999999998743

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.47  E-value=0.00068  Score=48.42  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999975

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.46  E-value=0.0019  Score=50.29  Aligned_cols=24  Identities=42%  Similarity=0.607  Sum_probs=21.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~   34 (211)
                      .+.+||+|+|.++||||||++.+.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            468999999999999999998874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.44  E-value=0.0018  Score=45.60  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999975

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.42  E-value=0.00091  Score=51.87  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999999754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.41  E-value=0.0019  Score=44.85  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999975

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.41  E-value=0.0019  Score=46.56  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++++|++|+|||||++.+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4788999999999999999854

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.41  E-value=0.0021  Score=45.41  Aligned_cols=24  Identities=38%  Similarity=0.513  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -.|++.|++|+|||+|++.+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999988643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.40  E-value=0.0026  Score=44.40  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.40  E-value=0.002  Score=46.93  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..+.|.+.|++|+||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999974

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.38  E-value=0.0022  Score=46.37  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.+++.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.37  E-value=0.002  Score=50.05  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..--|+++|++||||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            345788999999999999999975

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.37  E-value=0.0022  Score=44.01  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.36  E-value=0.0023  Score=47.14  Aligned_cols=21  Identities=33%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~   34 (211)
                      ..|.|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.36  E-value=0.0021  Score=47.34  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.35  E-value=0.0024  Score=43.71  Aligned_cols=22  Identities=41%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      -+|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.0018  Score=52.10  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|+.|+|||||++.|.+..
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999998753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.33  E-value=0.0023  Score=46.45  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=22.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ....-|+|.|..|||||||++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999999875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.33  E-value=0.0029  Score=43.87  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...|++.|.+|+||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999976

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.33  E-value=0.0017  Score=48.05  Aligned_cols=28  Identities=25%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...+...|+|.|..||||||+++.|...
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            3446678999999999999999998754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.32  E-value=0.0021  Score=51.83  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .--|+|+|.+|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            44688999999999999999975

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.32  E-value=0.0032  Score=45.70  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...-|++.|.+||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5567999999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.27  E-value=0.0026  Score=44.23  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.27  E-value=0.0026  Score=49.21  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ++.++|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.26  E-value=0.0025  Score=48.66  Aligned_cols=24  Identities=38%  Similarity=0.438  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      --++|+|+.|+|||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            356788999999999999999753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.24  E-value=0.015  Score=45.32  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=18.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .+ .+|+|++|+|||||++.++.
T Consensus        24 g~-~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           24 GI-TVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHH
Confidence            35 45899999999999999873

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.24  E-value=0.0031  Score=47.27  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999973

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.22  E-value=0.0026  Score=47.97  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++|+|++|+|||||+..+.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47889999999999999998643

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.22  E-value=0.0025  Score=46.90  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      -.|+++|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999965

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.17  E-value=0.004  Score=44.47  Aligned_cols=24  Identities=33%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ....|++.|.+|+||||+.+.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.15  E-value=0.0033  Score=42.04  Aligned_cols=26  Identities=19%  Similarity=0.123  Sum_probs=22.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ....|++.|++|+|||++.+.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34579999999999999999998754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.14  E-value=0.0032  Score=45.70  Aligned_cols=22  Identities=14%  Similarity=0.258  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999999874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.14  E-value=0.0043  Score=46.79  Aligned_cols=27  Identities=22%  Similarity=0.112  Sum_probs=21.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ..+.-+++.|+||+|||+|.+.+....
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344567888999999999999998643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.13  E-value=0.0027  Score=45.13  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+++.|+||+|||+++.++...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.12  E-value=0.0033  Score=51.57  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.11  E-value=0.0035  Score=44.80  Aligned_cols=21  Identities=29%  Similarity=0.240  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.10  E-value=0.0039  Score=42.06  Aligned_cols=20  Identities=45%  Similarity=0.652  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      .+|+|+.|+|||||+.++..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999863

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.08  E-value=0.0037  Score=46.68  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..-.+++.|++|+|||+|++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999999764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.08  E-value=0.0034  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      -.|+++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3688999999999999999986

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.07  E-value=0.0042  Score=46.80  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.06  E-value=0.0033  Score=51.59  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999999754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.06  E-value=0.0038  Score=46.92  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.|++.|++|+|||+|++.+.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.06  E-value=0.0037  Score=45.02  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|.|++|+|||+|++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.05  E-value=0.0036  Score=50.52  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .++|+|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.04  E-value=0.0042  Score=45.65  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.|++.|++|+|||+|++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.04  E-value=0.0039  Score=44.30  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.03  E-value=0.0044  Score=46.80  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ....|++.|++|+|||+|++.+...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999877653

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.0052  Score=44.36  Aligned_cols=27  Identities=11%  Similarity=-0.028  Sum_probs=21.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .+.+=|++-|.++.||++|++++.+..
T Consensus        27 ~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           27 QNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCceEEEecCcccccHHHHHHHHhccc
Confidence            344555555999999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.98  E-value=0.004  Score=47.12  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.|++.|++|+|||+|++.+.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.96  E-value=0.0043  Score=49.52  Aligned_cols=23  Identities=43%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.004  Score=51.80  Aligned_cols=23  Identities=39%  Similarity=0.567  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999999754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.91  E-value=0.0044  Score=47.29  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -.+++.|++|+|||+|++.+.+.-
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999998643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.91  E-value=0.0061  Score=42.97  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-+.|++.|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3578999999999999999999753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.87  E-value=0.0071  Score=44.90  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            35568999999999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.86  E-value=0.0047  Score=51.21  Aligned_cols=23  Identities=39%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68899999999999999998743

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.84  E-value=0.005  Score=51.22  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57899999999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.80  E-value=0.0061  Score=44.30  Aligned_cols=26  Identities=19%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ......|+|+|.+|+||||+.+.|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999999875

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.79  E-value=0.0053  Score=45.82  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999986

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.77  E-value=0.0061  Score=46.06  Aligned_cols=133  Identities=14%  Similarity=0.141  Sum_probs=68.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC------------CCCCCcc-----------eeeeEEEE----E--EE-CCeEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF------------EELSPTI-----------GVDFKIKH----V--AL-GGKKMK   62 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~------------~~~~~~~-----------~~~~~~~~----~--~~-~~~~~~   62 (211)
                      .-.|+++|++|+||||++..|...-.            +.+.+..           +.......    +  .+ .-..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d  184 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD  184 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence            34788999999999999999863211            1111100           00000000    0  00 002356


Q ss_pred             EEEEeCCCcccccc--cc--ccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292           63 LAIWDTAGQERFRT--LT--SSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV  136 (211)
Q Consensus        63 ~~i~D~~g~~~~~~--~~--~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (211)
                      +.|+||+|......  +.  ...+.  ..+..++|+|.+..  ...+.. +   ...+. .-+. .-+|+||.|..... 
T Consensus       185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~---~~~~~-~l~~-~giVltk~D~~~~~-  255 (296)
T 2px0_A          185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-I---VKRFS-SVPV-NQYIFTKIDETTSL-  255 (296)
T ss_dssp             EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-H---TTTTS-SSCC-CEEEEECTTTCSCC-
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-H---HHHHh-cCCC-CEEEEeCCCcccch-
Confidence            89999999654321  11  11222  35778899988754  222222 2   22221 1222 34667999974322 


Q ss_pred             cCHHHHHHHHHHhCCcEEEec
Q 028292          137 VSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~S  157 (211)
                         ..+.......++++..+.
T Consensus       256 ---g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          256 ---GSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             ---HHHHHHHHTCSCCCSEEC
T ss_pred             ---hHHHHHHHHHCcCEEEEE
Confidence               245566677788776554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.76  E-value=0.006  Score=50.06  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999854

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.76  E-value=0.0054  Score=50.83  Aligned_cols=23  Identities=43%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998743

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.75  E-value=0.0053  Score=50.33  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|+.|+|||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.74  E-value=0.0084  Score=47.57  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...-|+++|.+||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456889999999999999999753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.74  E-value=0.0061  Score=50.71  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|+|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999854

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.73  E-value=0.0066  Score=46.12  Aligned_cols=24  Identities=42%  Similarity=0.606  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.72  E-value=0.0057  Score=47.45  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.++|.|++|+|||+|++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.72  E-value=0.0054  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ++++.|++|+||||+++.+.+.-
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999998753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.72  E-value=0.007  Score=43.88  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      -+++.|+|++||||||+...|..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            47899999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.71  E-value=0.0063  Score=45.85  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.+++.|++|+|||+|++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999763

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.69  E-value=0.0068  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++|.|++|+|||+|++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.0062  Score=48.38  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      --|++.|+||+|||+|++++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.68  E-value=0.0068  Score=46.27  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.|++.|++|+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.68  E-value=0.0062  Score=46.55  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.|++.|++|+|||+|++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999999864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.66  E-value=0.0052  Score=47.37  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++++.|++|+|||||++.+.+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998873

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.0066  Score=48.30  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+--|++.|+||+|||+|++++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3457999999999999999999874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.63  E-value=0.0094  Score=44.98  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -.+++.|++|+|||++++.+....
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            479999999999999999998643

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.62  E-value=0.0073  Score=42.72  Aligned_cols=24  Identities=42%  Similarity=0.650  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .-|+++|++|+|||+|...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.61  E-value=0.0073  Score=45.84  Aligned_cols=86  Identities=17%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCcccccccc-------ccc-----ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292           61 MKLAIWDTAGQERFRTLT-------SSY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~-------~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  128 (211)
                      +.+.|+|+||........       ...     -...+.+++|+|.....  +.+.. .. .+..   ..++ .-+|+||
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~-~~~~---~~~i-~gvVlTk  258 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AK-IFKE---AVNV-TGIILTK  258 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HH-HHHH---HSCC-CEEEEEC
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HH-HHHh---cCCC-CEEEEeC
Confidence            458899999953222110       111     12468889999987432  11111 21 1211   1222 3466899


Q ss_pred             CCCCCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292          129 VDKESERVVSKKEGIDFAREYGCLFLECSA  158 (211)
Q Consensus       129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (211)
                      .|....-    -.+.......++|+.++..
T Consensus       259 ~D~~~~g----G~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          259 LDGTAKG----GITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GGGCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred             CCCccch----HHHHHHHHHHCCCEEEEeC
Confidence            9963222    2356677788888877654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.59  E-value=0.0056  Score=50.92  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999998743

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.57  E-value=0.0092  Score=46.11  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ...+|+++|++|+||||+.+.|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            346899999999999999987764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.0074  Score=48.08  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+--|++.|+||+|||+|++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999999864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.56  E-value=0.0048  Score=51.08  Aligned_cols=23  Identities=35%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            67899999999999999888743

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.0073  Score=50.24  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      ++++|+.|+|||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            78999999999999999997543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.53  E-value=0.0093  Score=42.13  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .|.|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999965

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.51  E-value=0.096  Score=39.73  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      +++-|++|+|||++++.+....
T Consensus        51 ~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHHT
T ss_pred             EEeeCcCCCCHHHHHHHHHHHh
Confidence            4555669999999999997643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.50  E-value=0.0082  Score=43.60  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999877764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.49  E-value=0.0095  Score=45.48  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.48  E-value=0.01  Score=43.23  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...|++-|..||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999999754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.47  E-value=0.0084  Score=47.18  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +--|++.|+||+|||+|++++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            446999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.45  E-value=0.0098  Score=52.00  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      .++++|+.|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999997654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.44  E-value=0.009  Score=46.27  Aligned_cols=23  Identities=22%  Similarity=0.544  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -.+++.|++|+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.44  E-value=0.0081  Score=48.40  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -+++++|++|+|||+|++.+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998764

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.43  E-value=0.035  Score=39.02  Aligned_cols=86  Identities=13%  Similarity=0.011  Sum_probs=54.3

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCH
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSK  139 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~  139 (211)
                      +.+.|+|+|+..  .......+..+|.+|++...+...  ..+.. +...+..... ..+.++.+|+|+.|....   ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~  147 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAG-SVVTVLEAQAYSRKVEARFLITRKIEMAT---ML  147 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHH-HHHHHHTTSCGGGCCEEEEEECSBCTTEE---EE
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHH-HHHHHHHHHHhCCCCcEEEEEeccCCCch---HH
Confidence            678999999864  334445566789999999886554  44444 4455543321 345677999999984221   23


Q ss_pred             HHHHHHHHHhCCcEE
Q 028292          140 KEGIDFAREYGCLFL  154 (211)
Q Consensus       140 ~~~~~~~~~~~~~~~  154 (211)
                      .+..+....++.+++
T Consensus       148 ~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          148 NVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHHcCCcee
Confidence            445555666666554

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.43  E-value=0.0038  Score=46.19  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999763

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.43  E-value=0.0087  Score=45.98  Aligned_cols=22  Identities=32%  Similarity=0.732  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.41  E-value=0.0065  Score=50.41  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999874

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.39  E-value=0.01  Score=42.17  Aligned_cols=20  Identities=45%  Similarity=0.652  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      .+|+|+.|+|||||+..+..
T Consensus        26 ~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            35669999999999998853

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.0072  Score=46.08  Aligned_cols=26  Identities=8%  Similarity=-0.026  Sum_probs=22.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ..-.++|.|+||+|||++++.++..-
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999998643

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.38  E-value=0.008  Score=46.68  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.35  E-value=0.0096  Score=46.16  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.35  E-value=0.0093  Score=46.14  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.34  E-value=0.011  Score=45.44  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999854

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.33  E-value=0.011  Score=44.88  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -|+|+|++|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999999754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.33  E-value=0.0094  Score=47.64  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.+++.|++|+|||+|++.+.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.33  E-value=0.01  Score=45.62  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999999875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.28  E-value=0.011  Score=45.74  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..-.|++.|++|+|||+|++.+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.26  E-value=0.01  Score=48.19  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.26  E-value=0.011  Score=48.61  Aligned_cols=23  Identities=39%  Similarity=0.494  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -.++++|++|+|||||++.+.+.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999999764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.26  E-value=0.0075  Score=49.58  Aligned_cols=25  Identities=36%  Similarity=0.498  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ....|+|+|.+|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4467999999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.25  E-value=0.012  Score=43.42  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ..|++.|++|+|||+|++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            579999999999999999998654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.24  E-value=0.01  Score=46.28  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ...|++.|++|+|||+|.+.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999764

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.23  E-value=0.0073  Score=46.19  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+++.|++|+|||+|++.+...
T Consensus        48 ~vll~G~pGtGKT~la~~la~~   69 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKT   69 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            7999999999999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-53
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-51
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-50
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-49
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-49
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-48
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-48
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-47
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	9e-46
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-45
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	5e-45
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-41
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-40
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-39
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-38
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-38
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-38
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-37
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-36
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-36
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	6e-36
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-35
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-34
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-34
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	9e-34
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-33
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-33
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-33
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-33
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-32
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-32
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-32
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-32
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-31
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	7e-29
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-29
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-28
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-28
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-28
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	6e-28
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	8e-28
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-26
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-24
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-24
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-23
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-22
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	6e-20
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-18
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	5e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	6e-16
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-09
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-08
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-08
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	5e-07
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-05
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	4e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	6e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.002
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	0.004

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  167 bits (424), Expect = 1e-53
 Identities = 83/170 (48%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
           + +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IW
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ +           + D  K+++G
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI--RNIEEHASADVEKMILG 118

Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           NK D   +R VSK+ G   A +YG  F+E SAK  +NVE  F  L   I 
Sbjct: 119 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (411), Expect = 1e-51
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           ++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL IWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFR++T SYYR A  +I+ YD+T  ++F  L +           +   I +LVGN
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL--REIEQYASNKVITVLVGN 118

Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           K+D    R VS++   +F+      +LE SAK   NVE+ F +L  +++
Sbjct: 119 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 167

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  159 bits (402), Expect = 5e-50
 Identities = 92/185 (49%), Positives = 116/185 (62%), Gaps = 3/185 (1%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +     +           +KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGN 119

Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSS 187
           K D + +RVV      +FA      FLE SA    NVE  F  +  +I ++ S  +   +
Sbjct: 120 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

Query: 188 GVKKN 192
             KK 
Sbjct: 180 TQKKE 184

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  155 bits (393), Expect = 4e-49
 Identities = 86/166 (51%), Positives = 107/166 (64%), Gaps = 4/166 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL IWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           ERFRT+T++YYRGA GII+VYD+T   TFTN+   +  +      N +   LLVGNK D 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWF--KTVNEHANDEAQLLLVGNKSDM 119

Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
           E  RVV+  +G   A+E G  F+E SAK   NV + F  L   I +
Sbjct: 120 E-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (393), Expect = 4e-49
 Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 4/169 (2%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIW 66
            +D  FK++L+GDSGVGK+ LL+ F    F       T+G+DF+ K + + G K+KL +W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T +YYR A  ++++YDVT + +F N+     +  +      D   +L+G
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--QHDVALMLLG 119

Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           NKVD   ERVV +++G   A+EYG  F+E SAKT +NV+  F  +  ++
Sbjct: 120 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (391), Expect = 1e-48
 Identities = 95/177 (53%), Positives = 120/177 (67%), Gaps = 5/177 (2%)

Query: 9   EFDYL--FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
           + D L   K+L+IG+SGVGKS+LLL FT DTF  EL+ TIGVDFK+K +++ G K KLAI
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           WDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L +   +     + N      ++
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN--ML 118

Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182
                 +  R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+ TP L 
Sbjct: 119 VGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 175

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  153 bits (387), Expect = 3e-48
 Identities = 77/169 (45%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+RT+T++YYRGA G I++YD+T  ++F  + D          +  +   LLVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS--TQIKTYSWDNAQVLLVGNK 119

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
            D E ERVVS + G   A   G  F E SAK  +NV+Q FE LV  I +
Sbjct: 120 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (383), Expect = 1e-47
 Identities = 83/167 (49%), Positives = 109/167 (65%), Gaps = 3/167 (1%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           + Y+FK ++IGD GVGKS LL  FT   F  +   TIGV+F  + + + G+K+KL IWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERFR +T SYYRGA G +MVYD+TRR T+ +L+       +   TN + + +L+GNK
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN--LTNPNTVIILIGNK 118

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            D E++R V+ +E   FA E G LFLE SAKT  NVE  F E   KI
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 9e-46
 Identities = 78/169 (46%), Positives = 111/169 (65%), Gaps = 3/169 (1%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +D+LFK L+IG++G GKS LL  F    F ++ + TIGV+F  K + +GGK +KL IWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERFR++T SYYRGA G ++VYD+T R+T+  L +       L   +Q+ + +L GNK
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA--SQNIVIILCGNK 119

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
            D +++R V+  E   FA+E   +FLE SA T  NVE+ F +   KIL+
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 1e-45
 Identities = 65/179 (36%), Positives = 106/179 (59%), Gaps = 12/179 (6%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-------- 59
           ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V    +        
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 60  --KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN 117
             K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ +  ++        
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 118 QDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
              I L +GNK D   +R V++++  + A +YG  + E SA T  NVE+  E L+  I+
Sbjct: 121 NPDIVL-IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 5e-45
 Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+     KE+  ++ + + + +LVGNK
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHA-DSNIVIMLVGNK 118

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            D    R V   E   FA +    F+E SA    NVE+ F+ ++ +I 
Sbjct: 119 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 2e-41
 Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y FK++L+G+  VGK++L+L +  + F ++   T+G  F  K + +GGK++ LAIWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERF  L   YYR + G I+VYD+T  D+F  + +   +         +    +VGNK+D
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR--KMLGNEICLCIVGNKID 119

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
            E ER VS +E   +A   G      SAK    +E+ F +L  ++++T
Sbjct: 120 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 2e-40
 Identities = 83/166 (50%), Positives = 114/166 (68%), Gaps = 3/166 (1%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           YLFK ++IGD+GVGKS LLL FT   F      TIGV+F  + V + GK++KL IWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QE FR++T SYYRGA G ++VYD+TRR+TF +L     ++   +S++ + + +L+GNK D
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWL-EDARQHSSS-NMVIMLIGNKSD 119

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            ES R V ++EG  FARE+G +F+E SAKT  NVE+ F     +I 
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 3e-39
 Identities = 62/163 (38%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F      TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR+L  SY R +   ++VYD+T  ++F                  D I +LVGNK D  
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT--ERGSDVIIMLVGNKTDLA 118

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
            +R VS +EG   A+E   +F+E SAK   NV+Q F  +   +
Sbjct: 119 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-38
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 1/163 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +K++++G  GVGKS L + F + TF E       DF  K + +      L I DTAG E+
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F ++   Y +  QG I+VY +  + +F +       +I      +    +LVGNKVD ES
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQD-IKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           ER VS  EG   A E+GC F+E SAK++  V++ F E+V ++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  127 bits (319), Expect = 5e-38
 Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 1/164 (0%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           L K++++G  GVGKS L L F  D F E       D   K V L G+++++ I DTAGQE
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D E
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLE 122

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            +R VS +E  + A ++   ++E SAKTR NV++ F +L+ +I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 6e-38
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 3/164 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           R+ +L   YYRGAQ  I+VYD+T  ++F    +    +      + + +  L GNK D  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV--KELQRQASPNIVIALSGNKADLA 124

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           ++R V  +E   +A +   LF+E SAKT +NV + F  +  K+ 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 6e-37
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 15/179 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K +++GD  VGK+ LL+S+T++ F         D    +V + GK + L +WDTAGQE 
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLDLRD 123

Query: 134 ERVVSKK------------EGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKILDTP 179
           ++   +K            +G+  A+E G   +LECSA T+  ++  F+E +  +L  P
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-36
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 20/192 (10%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           MA          + K +++GD  VGK+ LL+S+ +D F E       D     V +GGK+
Sbjct: 1   MAHGPGA----LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ 56

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y    + 
Sbjct: 57  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNV 114

Query: 121 IKLLVGNKVDKESERV------------VSKKEGIDFAREYG-CLFLECSAKTRVNVEQC 167
             LL+G ++D   +              +  ++G   A+E G C ++ECSA T+  ++  
Sbjct: 115 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 174

Query: 168 FEELVLKILDTP 179
           F+E ++ IL TP
Sbjct: 175 FDEAIIAIL-TP 185

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 3e-36
 Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 5/172 (2%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
             LFK++L+GD GVGKS+L+  + ++ F  +L  TIGV+F  K + + G  + + IWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC--IKLLVGN 127
           GQERFR+L + +YRG+   ++ + V    +F N    W KE   Y+  ++      ++  
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 122

Query: 128 KVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKILDT 178
                SER VS +E   + R+ G   + E SAK   NV   FEE V ++L T
Sbjct: 123 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 6e-36
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 1/166 (0%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
               KL+++G  GVGKS L + F    F         D   K  ++ G   +L I DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QE F  +   Y R   G ++V+ +  R +F  +  ++ + +       D   +LVGNK D
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR-VKDRDDFPVVLVGNKAD 122

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            ES+R V + E   F   +   + E SAK R+NV++ FE+LV  + 
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 5e-35
 Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +KL+++G  GVGKS L +    + F +       D   K V + G+   L I DTAGQE 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  +   Y R  +G + V+ +    +F      + ++I     + D   +LVGNK D   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSF-EDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            R V  ++  D AR YG  ++E SAKTR  VE  F  LV +I 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (296), Expect = 2e-34
 Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FK+++IGDS VGK+ L   F +  F +    TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 72  ERFRTL-TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ERFR      YYR    ++ VYD+T   +F +L     +E   +    D  ++LVGNK D
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI-EECKQHLLANDIPRILVGNKCD 120

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTR---VNVEQCFEEL 171
             S   V       FA  +     E SAK      +VE  F  L
Sbjct: 121 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D     V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
            +  L    Y      ++ + V    +F N+ + W  EI           LLVG ++D  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCPKTPFLLVGTQIDLR 120

Query: 133 SERVV------------SKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKILDTP 179
            +               + +     AR+     ++ECSA T+  ++  F+E +L  L+ P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 9e-34
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L+++G  GVGKS L + F    F         D   K   +  +  +L I DTAGQE 
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F  +   Y R  +G ++V+ VT R +F  +   + ++I       +   +L+GNK D + 
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           +R V+++EG   AR+    ++E SAK R+NV+Q F ELV  I 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +KL+++GD GVGKS L + F    F         D  +KH  +  +   L + DTAGQE 
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F  +   Y R   G ++VY VT + +F ++       + +       + +LV NKVD   
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM-ILVANKVDLMH 123

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTR-VNVEQCFEELVLKIL 176
            R V++ +G + A +Y   ++E SAK   +NV++ F +LV  I 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (286), Expect = 6e-33
 Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+G++ VGKS+++L F S+ F E   PTIG  F  + V +    +K  IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
           F +L   YYR AQ  ++VYDVT+  +F        +       ++D I  LVGNK+D   
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDMLQ 122

Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           +  ER V+++EG   A E G LF E SAKT  NV   F  +  KI
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 7e-33
 Identities = 62/163 (38%), Positives = 91/163 (55%), Gaps = 2/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +KL+++G  GVGKS L + F    F E       D   K V +  ++  L I DTAG E+
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F  +   Y +  QG  +VY +T + TF N      ++I      +D   +LVGNK D E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 134 ERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
           ERVV K++G + AR++  C FLE SAK+++NV + F +LV +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (285), Expect = 9e-33
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D+F   ++PTIG  F  K V    +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR L   YYRG+   I+VYD+T+ +TF+ L +   +           +  + GNK D  
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR--QHGPPSIVVAIAGNKCDLT 122

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             R V +++  D+A     +F+E SAK  +N+ + F E+  +I
Sbjct: 123 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (282), Expect = 3e-32
 Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKV 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L     + +   S    ++   +++GNK+
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           D E+ +V +K+       +    + E SAK  +NVEQ F+ +    L
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 15/176 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KL+++GD   GK+ LL+  + D F E+      +  +  + + GK+++LA+WDTAG E 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I   VGNK D  +
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL--VGNKKDLRN 120

Query: 134 ERVVSKK------------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
           +    ++            EG D A   G   ++ECSAKT+  V + FE      L
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 4e-32
 Identities = 48/159 (30%), Positives = 75/159 (47%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +++ + G  GVGKS+L+L F   TF E       D   + ++       L I DT G  +
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F  +           I+VY +T R +   L  I+ +  ++    +    +LVGNK D+  
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
            R V   E    AR + C F+E SAK   NV++ F+EL+
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  111 bits (278), Expect = 7e-32
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 6/163 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L             T           +  K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV--DKE 132
           R L   Y++  QG+I V D   R+      +   + +         + +    +   +  
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           +   ++ K G+   R          A +   + +  + L  ++
Sbjct: 118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G + +        K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 68

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE- 132
            R L   YY G QG+I V D   RD     A      I      +D I L+  NK D   
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDE-ARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 133 --SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
                 + +K G+   R+         A +   + +    L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (274), Expect = 3e-31
 Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++G+  VGKS+++  +    F ++   TIGVDF  + + +  + ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           F  +T +YYRGAQ  ++V+  T R++F  ++    K     +   D    LV NK+D   
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV---VAEVGDIPTALVQNKIDLLD 120

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
           +  +  +E    A+     F   S K  +NV + F+ L  K L
Sbjct: 121 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG + +        K +KL +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSY----KNLKLNVWDLGGQTS 73

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE- 132
            R     YY     +I V D T +D  +  +      +      QD   L+  NK D+  
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 133 --SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
             S   VSK+  +   ++     +  SA     + +  + L+  I +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 60/170 (35%), Positives = 100/170 (58%), Gaps = 6/170 (3%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK-MKLAIWDTAG 70
           + K++++GDSGVGK++L+  + +D + ++   TIG DF  K V + G K   + +WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN--QDCIKLLVGNK 128
           QERF++L  ++YRGA   ++VYDVT   +F N+     + +   + N  +    +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 129 VDKESER-VVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKIL 176
           +D E  + +VS+K   + A+  G       SAK  +NV+  FEE+    L
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 7e-29
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD G GK+T +    +  F ++   T+GV+            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           +F  L   YY  AQ  I+++DVT R T+ N+ +      DL    ++   +L GNKVD +
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIVLCGNKVDIK 120

Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
             +V +K   I F R+    + + SAK+  N E+ F  L  K++  P+L
Sbjct: 121 DRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 7e-29
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++++GDS  GK+ LL  F  D F E       +       +  ++++L++WDT+G   +
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD---- 130
             +    Y  +  +++ +D++R +T  ++   W  EI  +    +   LLVG K D    
Sbjct: 64  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 121

Query: 131 --------KESERVVSKKEGIDFAREYG-CLFLECSAKTRVN-VEQCFEELVLKILD 177
                      +  VS  +G + A++ G   ++ECSA    N V   F    L  ++
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-28
 Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KL + G +GVGKS L++ F +  F                 +  + + + I DTAGQE 
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
                  + R  +G ++VYD+T R +F  +  +    +D     ++   +LVGNK D + 
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLK-NILDEIKKPKNVTLILVGNKADLDH 120

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKT-RVNVEQCFEELVLKIL 176
            R VS +EG   A E  C F ECSA T   N+ + F EL  ++ 
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 4e-28
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K+ ++G   VGKS+L + F    F +       +   K + + G++  L + DTAGQ+ 
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
           +     +Y     G I+VY VT   +F  +  I  K +D          +LVGNK D   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD-MVGKVQIPIMLVGNKKDLHM 123

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           ERV+S +EG   A  +   FLE SAK        F  ++L+ 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  102 bits (253), Expect = 4e-28
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 8/165 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            +LL++G    GK+T+L  F  +  + +SPT+G + K        +  KL IWD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKS 58

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
            R+   +Y+    G+I V D   R    +      + + +         L+  NK D   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQREL-QSLLVEERLAGATLLIFANKQDLPG 117

Query: 134 ERVVSK---KEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
               +       +D  R +      CSA T  ++    + L+  I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 6e-28
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 2/163 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +K+LL+G  GVGKS L   F        +   G     + + + G++  L ++D   Q+ 
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
            R L           ++VY VT + +F   +++  +         D   +LVGNK D   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR-ARQTDDVPIILVGNKSDLVR 119

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            R VS  EG   A  + C F+E SA    NV+  FE +V +I 
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 162

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  101 bits (252), Expect = 8e-28
 Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K++++G    GK+T+L  F+ +     SPTIG + +   +       +  +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQES 71

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE- 132
            R+  ++YY   + +I+V D T R+  +   +   K +      +  + L+  NK D + 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQDVKE 130

Query: 133 --SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
             +   +S+   +   +++      C A T   + Q  E ++ ++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 8/168 (4%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           D   ++LL+G    GK+TLL    S+    ++PT G + K        +  KL +WD  G
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGG 69

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           Q + R    SY+     +I V D   R  F         E+           L+  NK D
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRFEE-TGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 131 ---KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
                    +++   +   R+       CSA T   V+     +   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (241), Expect = 2e-26
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 2/168 (1%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTS--DTFEELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +  ++++LIG+ GVGKSTL   F    D+ +     +G D   + + + G+   + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
              +        +        ++            A     ++      +D   +LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
            D    R VS  EG   A  + C F+E SA  + NV++ FE +V ++ 
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.7 bits (226), Expect = 4e-24
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 15/168 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           KLL +G    GK+TLL    +D    L PT           L    +K   +D  G  + 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH----PTSEELAIGNIKFTTFDLGGHIQA 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134
           R L   Y+    GI+ + D    + F          +   +  +D   +++GNK+D  + 
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 135 RVVSK----------KEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
              ++                  +       CS   R    + F+ L 
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 6e-24
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 4/164 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            +L ++GD+  GKS+L+  F + +++ L  T    +  K + + G+   + I + AG   
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 64

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
            +    +       +  + D       + L    +              +   +++   S
Sbjct: 65  AKFSGWADA--VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 122

Query: 134 ERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQCFEELVLKIL 176
            RVV          +   C + E  A   +NV++ F+E+  K++
Sbjct: 123 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 90.2 bits (222), Expect = 2e-23
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 8/167 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG + +        K +K  +WD  G   
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT----YKNLKFQVWDLGGLTS 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
            R     YY     +I V D   RD            ++     +  +  +  NK D E 
Sbjct: 62  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV-VFANKQDMEQ 120

Query: 134 ERVVSK---KEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
               S+     G+   ++      + SA     +++  E LV  +  
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.0 bits (220), Expect = 1e-22
 Identities = 37/197 (18%), Positives = 61/197 (30%), Gaps = 17/197 (8%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           Q +    +LLL+G    GKST++             T G+            K+   ++D
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFETK----FQVDKVNFHMFD 53

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------ADIWAKEIDLYSTNQ 118
             GQ   R      +     II V   +  +              A    K I      +
Sbjct: 54  VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 113

Query: 119 DCIKLLVGNKVDKESERVVSKKEGI-DFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
               +L  NK D  +E+V++ K  I D+  E+        A      +         I D
Sbjct: 114 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 173

Query: 178 TPSLLSEGSSGVKKNIF 194
               +S  S   +   +
Sbjct: 174 EFLRISTASGDGRHYCY 190

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 2e-22
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 9/163 (5%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G + +          + + +WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQP 58

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
           RFR++   Y RG   I+ + D   ++     +      +      Q    L++GNK D  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEA-SKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 133 S---ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
               E+ + +K  +   ++        S K + N++   + L+
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.5 bits (200), Expect = 6e-20
 Identities = 33/198 (16%), Positives = 54/198 (27%), Gaps = 40/198 (20%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KLLL+G    GKST +          + PT G+           + +   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGV-PTTGIIEYPFD----LQSVIFRMVDVGGQRS 57

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------ADIWAKEIDLYSTNQDCIKLL 124
            R      +     I+ +  ++  D              +    + I  Y   Q+   +L
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 125 VGNKVDKESERVVSKKEGIDFAREYG--------------------------CLFLECSA 158
             NK D   E+++       F    G                                 A
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 159 KTRVNVEQCFEELVLKIL 176
               N+   F  +   IL
Sbjct: 178 TDTENIRFVFAAVKDTIL 195

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 76.7 bits (187), Expect = 3e-18
 Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 20/177 (11%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KL+ +G    GK+TLL     D   +  PT+    +   +      M    +D  G  +
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 69

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
            R +  +Y     GI+ + D    +      +     +    T  +   L++GNK+D+  
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE 128

Query: 134 ERVVSK---------------KEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
                +                  +            CS   R    + F  +   I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.5 bits (187), Expect = 5e-18
 Identities = 31/168 (18%), Positives = 48/168 (28%), Gaps = 17/168 (10%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           L K+LL+G    GKST L            PT G+           K +   + D  GQ 
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRII--HGQDPTKGIHEYD----FEIKNVPFKMVDVGGQR 55

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------ADIWAKEIDLYSTNQDCIKL 123
             R      +     I+ +   +  D              +    + I       +   +
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
           L  NK D   E+V        F    G        +    + +CF   
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGK 161

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.3 bits (181), Expect = 4e-17
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 2/123 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
            +L +G    GK+ L +   +  + +   +I     I  V          I     +   
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYSTNQDCIKLLVGNKVDKE 132
             L   +   A+ ++ V D             +  ++  D  +       L+  NK D  
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121

Query: 133 SER 135
             +
Sbjct: 122 MAK 124

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.8 bits (172), Expect = 6e-16
 Identities = 33/198 (16%), Positives = 53/198 (26%), Gaps = 43/198 (21%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KLLL+G    GKST++               G    I       K +   ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE----AGTG----IVETHFTFKDLHFKMFDVGGQRS 54

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY---------STNQDCIKLL 124
            R      + G   II    ++  D      +   +  +               D   +L
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 125 VGNKVDKESERVVSKKEGIDFAREYG--------------------------CLFLECSA 158
             NK D   E++      I +    G                                 A
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 159 KTRVNVEQCFEELVLKIL 176
               NV+  F+ +   I+
Sbjct: 175 TDTKNVQFVFDAVTDVII 192

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 52.1 bits (123), Expect = 2e-09
 Identities = 29/166 (17%), Positives = 49/166 (29%), Gaps = 18/166 (10%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA---- 69
            K+++ G    GKS+LL +        ++   G    +    +    M L I DTA    
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 70  ----GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
                +             A  ++ + D T  D              +          +V
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP---AEIWPEFIARLPAKLPITVV 118

Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
            NK D          E +  +   G   +  SA+T   V+     L
Sbjct: 119 RNKADI-------TGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 157

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 25/166 (15%), Positives = 45/166 (27%), Gaps = 4/166 (2%)

Query: 18  LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ----ER 73
           L+G    GKS+LL + T    +              V    ++ +  + D  G       
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
            + L   + R      ++  V              ++           +  +      + 
Sbjct: 66  GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125

Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
               + K   D     G   L  SA T   +    E L   +  TP
Sbjct: 126 LEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 171

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 20/200 (10%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           Y   +++ G    GK++LL   T+D+     PT+     +      G  +   + D  G 
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADYDGSGVT--LVDFPGH 56

Query: 72  ERFRTLTSSYY-----RGAQGIIMVYDVTRRDTFTNLADIWAK--EIDLYSTNQDCIKLL 124
            + R   S Y           I MV         T  A+       I   S       L+
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 125 VGNKVDKESERVVSKK--------EGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
             NK +  + R  SK         + +   R+     +E         E   + L     
Sbjct: 117 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDG 176

Query: 177 DTPSLLSEGSSGVKKNIFKE 196
              + L       + +I K 
Sbjct: 177 FKFANLEASVVAFEGSINKR 196

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 45.9 bits (107), Expect = 5e-07
 Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 2/169 (1%)

Query: 18  LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77
           ++G   VGKSTLL +        +SP      K     L   + ++   DT G  +    
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA 69

Query: 78  TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 137
              +        +                  ++  +    +  +  +    V  + +   
Sbjct: 70  LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129

Query: 138 SKKEGIDFAREYGCL--FLECSAKTRVNVEQCFEELVLKILDTPSLLSE 184
             +E +    E          SA     V +   +L+  + + P    E
Sbjct: 130 YPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPE 178

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 11/181 (6%)

Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAI 65
           S+ E     K+ ++G   VGKSTL  +  +     +SP  G         +     K   
Sbjct: 1   SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 60

Query: 66  WDTAGQERFRTLTSSYYRGAQGI----------IMVYDVTRRDTFTNLADIWAKEIDLYS 115
            DTAG  R   +                     ++V  +      T      A  ++   
Sbjct: 61  VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRG 120

Query: 116 TNQDCIKLLVGNKVDKESERVVSKKEGID-FAREYGCLFLECSAKTRVNVEQCFEELVLK 174
                +       V +E       K   +          +  SA    N+++  + + L 
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180

Query: 175 I 175
            
Sbjct: 181 Y 181

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 9/179 (5%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTS-DTFEELSPTIGVDFKIKHVALGGKK 60
           A        D   ++   G S  GKS+ L + T+  +    S T G    I    +   K
Sbjct: 5   APDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 64

Query: 61  MKLAIWDTAGQ-------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL 113
             + +              +++     Y    Q +  +  +          D    E  +
Sbjct: 65  RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV 124

Query: 114 YSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEEL 171
            S     + L   +K+   + +              G       S+  +  V++  ++L
Sbjct: 125 DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG---- 70
           +++++G   VGKSTLL    ++    ++   G    +    +  + +   I DTAG    
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 71  -----QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
                +      T      A  ++ V D +             K ++     +  + +  
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDE-----EDRKILERIKNKRYLVVINK 116

Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
            + V+K +E  +  K G D         ++ SA     +E+  E + 
Sbjct: 117 VDVVEKINEEEIKNKLGTDRH------MVKISALKGEGLEKLEESIY 157

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 17/167 (10%)

Query: 18  LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----- 72
           ++G   VGKSTL           +    GV        +        + DT G       
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 73  ----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
               + + +T +  R A  ++ V D  R  T  + +           T     K      
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANK---AEN 121

Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
           + +    V  +   + F        +  SA+  +N++   E ++ K+
Sbjct: 122 LREFEREVKPELYSLGFGE-----PIPVSAEHNINLDTMLETIIKKL 163

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 28/173 (16%), Positives = 48/173 (27%), Gaps = 9/173 (5%)

Query: 18  LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77
           ++G   VGKSTLL           S                   +    DT G       
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 78  TSSYYRGAQGIIMVYDVTRRDTFTNLAD-----IWAKEIDLYSTNQDCIKLLVGNKVDKE 132
             +          + DV   +    + +        + +           +L  NKVD  
Sbjct: 70  AINRLMNKAASSSIGDV---ELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 126

Query: 133 SERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTPSLLSE 184
            E+          A +   L  +  SA+T +NV+     +   + +      E
Sbjct: 127 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 179

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 11/140 (7%)

Query: 14  FKLLLIGDSGVGKSTLLLSFT-SDTFEELSPTIGVDFKIKHVALG--GKKMKLAIWDTAG 70
             + + G++G GKS+ + +       EE +   GV                 +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK--LLVGNK 128
                    +Y    +     YD     +          +ID+        K    V  K
Sbjct: 117 IGSTNFPPDTYL--EKMKFYEYDFFIIIS---ATRFKKNDIDIAKAISMMKKEFYFVRTK 171

Query: 129 VDKESERVVSKKEGIDFARE 148
           VD +       +    F +E
Sbjct: 172 VDSDITNEADGEP-QTFDKE 190

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 16/174 (9%)

Query: 18  LIGDSGVGKSTLLLSFT-------SDTFEELSPTIGVDF-----KIKHVALGGKKMKLAI 65
           L+G   VGKSTLL   +          F  L P +G+             L G       
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 65

Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
               G +  R +  +        +   +           +    E +L  T +  I +  
Sbjct: 66  GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 125

Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
              + + +E +    E               SA TR  + +   E+  ++ +TP
Sbjct: 126 KMDMPEAAENL----EAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 175

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 4/181 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             +L++G  GVGKS+ + S   +    +SP      +   V+       L I DT G   
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
              +        +  ++   +        L       +D        I    G  +  ++
Sbjct: 93  GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKL--VAKAITDSFGKGIWNKA 150

Query: 134 ERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQCFEELVLKIL-DTPSLLSEGSSGVKK 191
              ++  +        Y   F + S      V             D P +L E S    K
Sbjct: 151 IVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNK 210

Query: 192 N 192
           N
Sbjct: 211 N 211

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 8/16 (50%), Positives = 14/16 (87%)

Query: 15 KLLLIGDSGVGKSTLL 30
          K+++ G+ GVGK+TL+
Sbjct: 2  KIIITGEPGVGKTTLV 17

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.98
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.94
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.85
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.79
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.75
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.7
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.7
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.65
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.61
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.47
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.36
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.35
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.34
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.28
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.08
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.04
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.96
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.94
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.5
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.45
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.42
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.41
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.41
d1okkd2	207	GTPase domain of the signal recognition particle r	98.39
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.35
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.32
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.26
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.25
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.25
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.15
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.74
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.7
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.61
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.61
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.59
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.56
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.5
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.5
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.48
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.47
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.47
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.46
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.43
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.39
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.35
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.32
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.29
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.27
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.25
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.23
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.22
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.21
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.2
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.17
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.15
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.12
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.1
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.09
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.09
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.09
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.09
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.08
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.08
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.06
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.05
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.05
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.04
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.03
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.03
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.99
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.99
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.98
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.98
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.97
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.97
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.93
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.92
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.92
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.92
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.91
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.91
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.9
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.9
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.89
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.88
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.87
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.83
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.78
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.75
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.75
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.74
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.71
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.71
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.71
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.7
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.69
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.65
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.64
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.62
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.56
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.54
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.44
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.43
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.4
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.4
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.38
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.32
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.3
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.29
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.27
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.27
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.22
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.12
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.11
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.05
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.03
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.01
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.01
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.89
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.83
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.67
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.55
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.51
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.38
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.37
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.35
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.32
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.27
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.23
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.16
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.15
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.08
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.06
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.06
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.05
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.04
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.98
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.96
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.96
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.94
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.93
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.84
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.84
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.67
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.62
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.59
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.51
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.46
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.45
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.44
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.27
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.2
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.02
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.99
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.89
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.7
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.53
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.42
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.99
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.95
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.77
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.75
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.61
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.55
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.18
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.62
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.19
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.55
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.02
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.64
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.7
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.49
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.03
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.18
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.85
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.56
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.6
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.1
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.58
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	84.55
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.2
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.04
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.98
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	83.87
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.64
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.49
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.26
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	82.84
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	82.68
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.94
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.8
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	80.63
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.04
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.03

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-38  Score=223.22  Aligned_cols=171  Identities=32%  Similarity=0.470  Sum_probs=150.5

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +++.+.+||+|+|++|||||||+++|+++.+.........+.....+.+++..+.+.+||++|++++...+..+++++|+
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            35668899999999999999999999999984444444556666788899999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +|+|||++++.+|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++..++++|++|||++|.||+++
T Consensus        81 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999988 5555544443678999999999999888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028292          168 FEELVLKILDTP  179 (211)
Q Consensus       168 ~~~i~~~~~~~~  179 (211)
                      |.+|++.+.+++
T Consensus       160 f~~l~~~i~k~~  171 (173)
T d2fn4a1         160 FEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-37  Score=218.06  Aligned_cols=166  Identities=48%  Similarity=0.833  Sum_probs=150.8

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ++.+||+|+|++|||||||+++|.++.+ ..+.++.+.+.....+......+.+.+|||||++.+..++..+++++|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            5679999999999999999999999988 677788888899999999999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||+++++++..+..++ ....... ....|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.||+++|+
T Consensus        83 lv~d~~~~~s~~~~~~~~-~~~~~~~-~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          83 LMYDITNEESFNAVQDWS-TQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHH-HHHHHHC-CSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECccchhhhhhhhhh-hhhhccc-CCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            999999999999988844 4444443 57899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028292          170 ELVLKILDT  178 (211)
Q Consensus       170 ~i~~~~~~~  178 (211)
                      +|++.+.++
T Consensus       161 ~l~~~i~ek  169 (169)
T d3raba_         161 RLVDVICEK  169 (169)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhhC
Confidence            999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-38  Score=219.15  Aligned_cols=164  Identities=39%  Similarity=0.733  Sum_probs=143.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.+||+|+|++|||||||+++++++.+ ..+.++.+.+........++..+.+.+||++|+..+..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            679999999999999999999999998 6778888888999999999999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||+++++||+.+.. |+..+.... ....|+++|+||+|+...+.+..+++..++..++++++++||++|.||+++|.+
T Consensus        82 v~d~~~~~Sf~~~~~-~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~  159 (167)
T d1z08a1          82 VYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeCCchhHHHhhhh-hhhhccccc-ccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHH
Confidence            999999999999988 444444443 477899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028292          171 LVLKILD  177 (211)
Q Consensus       171 i~~~~~~  177 (211)
                      |++.+.+
T Consensus       160 l~~~i~~  166 (167)
T d1z08a1         160 LCKRMIE  166 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-38  Score=219.83  Aligned_cols=164  Identities=29%  Similarity=0.390  Sum_probs=132.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      .+||+|+|++|||||||++++.+..+....++.+.. ....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC---------CEE-EEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeee-ecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            379999999999999999999988775555554444 4556788999999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++.+|+.+.. |+..+........+|+++|+||+|+.+.+.+...++.+++..++++|+++||++|.||+++|.+|+
T Consensus        80 d~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          80 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccc-ccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            9999999999988 666666555467899999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028292          173 LKILDT  178 (211)
Q Consensus       173 ~~~~~~  178 (211)
                      +.+..+
T Consensus       159 ~~i~~~  164 (168)
T d2gjsa1         159 RQIRLR  164 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-38  Score=218.40  Aligned_cols=162  Identities=31%  Similarity=0.609  Sum_probs=149.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+|+|++|||||||+++|+++.+ ..+.++.+.+........++..+.+.+||++|+..+...+..+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999888 67788889888999999999999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||++++++|+.+.. |++.+....  .++|+++|+||+|+.+.+.+..+++.++++.++++|+++||++|.||+++|++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  158 (164)
T d1z2aa1          82 FSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  158 (164)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             Eeccchhhhhhccc-ccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHH
Confidence            99999999999887 777776554  679999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHc
Q 028292          172 VLKILD  177 (211)
Q Consensus       172 ~~~~~~  177 (211)
                      ++.+.+
T Consensus       159 ~~~~lq  164 (164)
T d1z2aa1         159 AEKHLQ  164 (164)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-37  Score=216.55  Aligned_cols=166  Identities=45%  Similarity=0.801  Sum_probs=150.1

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      .+..+||+|+|++|||||||+++|+++.+ ..+.++.+.++....+.+.+..+.+.+|||+|++.+..++..++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            45789999999999999999999999988 66777888888999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++|||.+++.+|+.+..+| ..+.... ...+|+++|+||+|+.....+..+++.+++...++++++|||++|.||+++|
T Consensus        82 i~v~d~~~~~s~~~~~~~~-~~i~~~~-~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWL-REIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  159 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHH-HHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEeeecccchhhhhhhhhh-hhhcccc-cccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHH
Confidence            9999999999999998844 4444443 5679999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 028292          169 EELVLKILD  177 (211)
Q Consensus       169 ~~i~~~~~~  177 (211)
                      .+|++.+.+
T Consensus       160 ~~l~~~l~~  168 (171)
T d2ew1a1         160 LDLACRLIS  168 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=215.96  Aligned_cols=164  Identities=30%  Similarity=0.470  Sum_probs=146.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.+||+|+|++|||||||+++|+++.+ ..+.++.+..+ ...+.+++..+.+.+||++|...+..++..++.++|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4678999999999999999999999888 56677777664 466788999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++++|+.+.. |+..+.......++|+++|+||+|+...+.+..+++.+++++++++|+++||++|.||+++|.
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~  159 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  159 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            9999999999999988 555555444467899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028292          170 ELVLKIL  176 (211)
Q Consensus       170 ~i~~~~~  176 (211)
                      .|++.+.
T Consensus       160 ~li~~~~  166 (167)
T d1xtqa1         160 RIILEAE  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-37  Score=215.20  Aligned_cols=165  Identities=33%  Similarity=0.543  Sum_probs=146.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +++||+++|++|||||||++++.++.+ ..+.++.+. .....+.+++..+.+.+||++|.+.+...+..+++++|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE-EEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceee-ccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            469999999999999999999999988 555666554 445667889999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC-CHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQCFE  169 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~  169 (211)
                      |||++++++|+.+.. |...+.......++|+++++||+|+...+.+..+++.++++.++++|+++||+++. ||+++|.
T Consensus        82 v~d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          82 VYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             ecccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999999999999988 55555555446789999999999999888999999999999999999999999886 9999999


Q ss_pred             HHHHHHHcC
Q 028292          170 ELVLKILDT  178 (211)
Q Consensus       170 ~i~~~~~~~  178 (211)
                      .|++.+.++
T Consensus       161 ~l~~~i~~~  169 (169)
T d1x1ra1         161 DLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.8e-37  Score=217.09  Aligned_cols=165  Identities=36%  Similarity=0.611  Sum_probs=145.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+||+|+|++|||||||+++++.+.+ ..+.++.+..+ ...+.+++..+.+.+||++|+.++..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999998 66677777554 4567789999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.||+++|.+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeeccchhhhhhHHH-HHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999988 6666665555788999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028292          171 LVLKILDT  178 (211)
Q Consensus       171 i~~~~~~~  178 (211)
                      |++.+..+
T Consensus       161 l~~~i~~r  168 (168)
T d1u8za_         161 LMREIRAR  168 (168)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHCc
Confidence            99988653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-37  Score=214.49  Aligned_cols=164  Identities=51%  Similarity=0.850  Sum_probs=149.0

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ++.+||+|+|++|||||||+++++++.+ ..+.++.+.++......+++..+.+.+||++|++.+..++..+++++|++|
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            4679999999999999999999999988 566777888888899999999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||+++.++|+.+.. |...+.... ....|+++++||+|+.+...+..+++..+++..+++++++||++|.||+++|.
T Consensus        82 lv~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~  159 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  159 (166)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeccCchHHHHHHHH-HHHHHHhhc-cccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999888 445554444 67899999999999988888888999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028292          170 ELVLKIL  176 (211)
Q Consensus       170 ~i~~~~~  176 (211)
                      +|++.++
T Consensus       160 ~i~~~i~  166 (166)
T d1z0fa1         160 EAAKKIY  166 (166)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=215.60  Aligned_cols=166  Identities=33%  Similarity=0.632  Sum_probs=146.8

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +....+||+|+|++|||||||+++|+.+.+ ..+.++.+ +.....+...+..+.+.+||++|++.+...+..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            456789999999999999999999999998 55666665 4556667788889999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhC-CcEE
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYG-CLFL  154 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~  154 (211)
                      +++|||+++++||+++..+|...++...  .++|+++|+||+|+.+            .+.+..+++.+++..++ +.|+
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~  161 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  161 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcC--CCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEE
Confidence            9999999999999998887888887664  6899999999999854            45678899999999988 6999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHc
Q 028292          155 ECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       155 ~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      +|||++|.||+++|+.++++++.
T Consensus       162 E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         162 ECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EecCCCCcCHHHHHHHHHHHHcC
Confidence            99999999999999999998853

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-37  Score=214.41  Aligned_cols=167  Identities=34%  Similarity=0.605  Sum_probs=143.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ++..+||+|+|++|||||||+++++.+.+ ..+.++.+ +.....+.+++..+.+.+||++|...+...+..++.++|++
T Consensus         2 m~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (171)
T d2erya1           2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGF   80 (171)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceE
Confidence            34569999999999999999999999988 55566655 55667788899999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++|||.+++++|+.+.. |...+.........|+++|+||+|+...+.+..+++.++++.++++|++|||++|.||+++|
T Consensus        81 ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f  159 (171)
T d2erya1          81 LLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF  159 (171)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEeeccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHH
Confidence            99999999999999988 55444444436789999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028292          169 EELVLKILDT  178 (211)
Q Consensus       169 ~~i~~~~~~~  178 (211)
                      .+|++.+.+.
T Consensus       160 ~~l~~~i~k~  169 (171)
T d2erya1         160 HELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-37  Score=213.68  Aligned_cols=161  Identities=39%  Similarity=0.659  Sum_probs=147.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   92 (211)
                      +||+|+|++|||||||+++|.++++ ..+.++.+.+........++..+.+.+||++|++.+...+..++.++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6899999999999999999999998 677788888888888999999999999999999999999999999999999999


Q ss_pred             ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV  172 (211)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  172 (211)
                      |++++.+|+.+..+|. .+.... ..++|+++|+||+|+.+.+.+..+++.++++.++++|++|||++|+||+++|.+|+
T Consensus        81 d~~~~~s~~~i~~~~~-~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1          81 DITNVNSFQQTTKWID-DVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             ETTCHHHHHTHHHHHH-HHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccchhhhHhhHH-HHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            9999999999988554 444444 47899999999999988888889999999999999999999999999999999999


Q ss_pred             HHHH
Q 028292          173 LKIL  176 (211)
Q Consensus       173 ~~~~  176 (211)
                      +++.
T Consensus       159 ~~l~  162 (164)
T d1yzqa1         159 AALP  162 (164)
T ss_dssp             HHSC
T ss_pred             HhhC
Confidence            9875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-36  Score=214.96  Aligned_cols=172  Identities=55%  Similarity=0.879  Sum_probs=155.4

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +.+..+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++++|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            456789999999999999999999999987 6778888988888899999999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +|+|||++++++|..+.. |...+.... ..++|+++|+||+|+.+...+..++...++...++.++++||++|.||+++
T Consensus        82 ~i~v~d~t~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA  159 (194)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEeCcchhhhhhHhh-hhhhhhhcc-cCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHH
Confidence            999999999999999988 444454444 688999999999999998999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 028292          168 FEELVLKILDTPSLL  182 (211)
Q Consensus       168 ~~~i~~~~~~~~~~~  182 (211)
                      |.+|++.+.+.....
T Consensus       160 f~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         160 FLTMARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999988755443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-36  Score=211.93  Aligned_cols=162  Identities=38%  Similarity=0.712  Sum_probs=148.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.+||+|+|.+|||||||+++|..+.+ ..+.++.+..........+.....+.+||++|++.+..++..+++++|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            679999999999999999999999998 6777888888888888999999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++|+.+.. |...+.... ..+.|+++|+||+|+.+.+.+..+++.+++..++++|+++||++|.||+++|.+
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          83 VYDITKEETFSTLKN-WVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeeechhhhhhhHHH-hhhhhhhcc-CCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999988 444555444 578999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028292          171 LVLKI  175 (211)
Q Consensus       171 i~~~~  175 (211)
                      |++++
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-37  Score=216.07  Aligned_cols=165  Identities=30%  Similarity=0.466  Sum_probs=143.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.|||+|+|++|||||||+++|+++.+ ..+.++.+.. ......+++..+.+.+||++|.+.+...+..+++++|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec-cccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            368999999999999999999999988 5666777644 34566789999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++++|+.+..++...........++|+++|+||+|+.+.+.+..+++.++++.++++|+++||++|.||+++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999998855555444444578999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028292          171 LVLKILD  177 (211)
Q Consensus       171 i~~~~~~  177 (211)
                      |++.+.+
T Consensus       160 l~~~~~~  166 (171)
T d2erxa1         160 LLNLEKR  166 (171)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHHH
Confidence            9986543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=212.22  Aligned_cols=166  Identities=50%  Similarity=0.821  Sum_probs=146.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ++.+||+|+|++|||||||+++++++++ ..+.++.+.+.........+..+.+.+||++|+..+..++..++..+|++|
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            3679999999999999999999999988 666777778888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||++++.+|+.+..+ +..+.... ..++|++||+||+|+...+.+..+++..++..++++|+++||++|.||+++|.
T Consensus        81 lv~d~~~~~sf~~~~~~-~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~  158 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSW-LEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI  158 (173)
T ss_dssp             EEEETTCHHHHHTHHHH-HHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEeecChHHHHhHHHH-HHHHHHhC-CCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999884 44455544 57899999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028292          170 ELVLKILDT  178 (211)
Q Consensus       170 ~i~~~~~~~  178 (211)
                      +|++.++++
T Consensus       159 ~i~~~i~~~  167 (173)
T d2a5ja1         159 NTAKEIYRK  167 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=212.25  Aligned_cols=166  Identities=47%  Similarity=0.811  Sum_probs=150.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      +..+||+|+|++|||||||+++|..+.+ ..+.++.+.+.....+..++....+.+||+||++.+..+++.++.++|++|
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            5679999999999999999999999988 667778888888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||.+++++|..+.. |...+.... ..++|+++|+||+|+.....+...++..++..++++++++||++|.|++++|.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          83 LVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEecccchhHHHHhh-hhccccccc-CCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            9999999999999888 444454444 57899999999999988888888999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 028292          170 ELVLKILDT  178 (211)
Q Consensus       170 ~i~~~~~~~  178 (211)
                      +|++.+.++
T Consensus       161 ~l~~~i~~~  169 (174)
T d2bmea1         161 QCARKILNK  169 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=212.68  Aligned_cols=163  Identities=38%  Similarity=0.638  Sum_probs=144.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.+||+|+|++|||||||+++++++.+ ..+.++.+ +.......+++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            569999999999999999999999998 44555544 5667778889999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||++++.+|..+.. |...+.......++|++||+||+|+...+.+..+++..++..++++++++||++|.||+++|.+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            999999999999998 5555544444678999999999999888888899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028292          171 LVLKIL  176 (211)
Q Consensus       171 i~~~~~  176 (211)
                      |++++.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=211.85  Aligned_cols=164  Identities=30%  Similarity=0.547  Sum_probs=144.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+||+|+|++|||||||+++|..+.+ ..+.++.+ ........+++..+.+.+||++|++++...+..+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            369999999999999999999999998 55666666 4456667788999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhC-CcEEEec
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYG-CLFLECS  157 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~S  157 (211)
                      |||+++++||+++..+|...+....  .++|+++|+||+|+.+            .+.+..+++.+++.+++ ++|+++|
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECS  158 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECC
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcC--CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEe
Confidence            9999999999999887887777654  7899999999999843            34588899999999865 7999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcC
Q 028292          158 AKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~~~~~~  178 (211)
                      |++|.||+++|+.++..+.+.
T Consensus       159 Ak~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         159 ALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTTCTTHHHHHHHHHHHHTSC
T ss_pred             CCCCcCHHHHHHHHHHHHhcC
Confidence            999999999999999888654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-36  Score=213.45  Aligned_cols=168  Identities=51%  Similarity=0.911  Sum_probs=124.3

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      ..++.+||+|+|.++||||||+++|+++.+ ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            457889999999999999999999999887 6667788888999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +|+|||++++.+|+.+.. |...+.... ..+.|+++|+||.|+........+++..++...++++++|||++|+||+++
T Consensus        82 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA  159 (173)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             EEEEEECCChhhHHHHHH-HHHHhhhhc-cCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999988 445554444 678999999999999888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |.+|++.+.++
T Consensus       160 f~~l~~~i~~k  170 (173)
T d2fu5c1         160 FFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-36  Score=210.02  Aligned_cols=162  Identities=33%  Similarity=0.588  Sum_probs=143.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      ..||+|+|++|||||||++++..+.+ ..+.++.+ +.......+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999998 45556655 55566778899999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CcEEEecc
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG-CLFLECSA  158 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  158 (211)
                      ||+++++||+++..+|...+....  .++|++||+||+|+.+.            +.+..+++..+++.++ ++|++|||
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA  158 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA  158 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhC--CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecC
Confidence            999999999999887888877664  68999999999998542            4577889999999988 48999999


Q ss_pred             CCCCCHHHHHHHHHHHHHc
Q 028292          159 KTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~~~~  177 (211)
                      ++|.||+++|+.+.+.+++
T Consensus       159 kt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         159 KTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhC
Confidence            9999999999999998864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=210.95  Aligned_cols=165  Identities=45%  Similarity=0.779  Sum_probs=147.3

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ++.+||+|+|++|||||||+++++++.+ ..+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++++|++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            5679999999999999999999999988 667777888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      +|||.+++++|..+.. |+..+..+. ..++|+++|+||+|+.+.+....+....+...++.+++++||++|.|++++|.
T Consensus        82 ~v~d~~~~~S~~~~~~-~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~  159 (175)
T d2f9la1          82 LVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  159 (175)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCcccchhHHH-HHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHH
Confidence            9999999999999998 566666665 57899999999999987777778888888899999999999999999999999


Q ss_pred             HHHHHHHc
Q 028292          170 ELVLKILD  177 (211)
Q Consensus       170 ~i~~~~~~  177 (211)
                      ++++.+.+
T Consensus       160 ~l~~~i~~  167 (175)
T d2f9la1         160 NILTEIYR  167 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=211.34  Aligned_cols=164  Identities=39%  Similarity=0.648  Sum_probs=149.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      -.+||+|+|++|||||||+++|..+.+ ..+.++.+.+............+.+.+||++|++.+..++..+++++|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            358999999999999999999999998 6778888888888899999999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||.+++++|+.+..+|.. +.... ..++|+++|+||+|+...+.+..+++.+++..++++|+++||++|.||+++|.+
T Consensus        85 v~d~~~~~s~~~~~~~~~~-~~~~~-~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKE-LQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHH-HHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhh-hhhcc-CCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999884544 44333 578999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 028292          171 LVLKILD  177 (211)
Q Consensus       171 i~~~~~~  177 (211)
                      |++.+.+
T Consensus       163 l~~~i~~  169 (170)
T d1r2qa_         163 IAKKLPK  169 (170)
T ss_dssp             HHHTSCC
T ss_pred             HHHHHhh
Confidence            9987754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=209.05  Aligned_cols=172  Identities=60%  Similarity=0.986  Sum_probs=154.2

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (211)
                      +...++||+|+|++|||||||+++|.++.+ ..+.++.+.......+.+++..+.+.+|||||++.+..++..++.++|+
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345679999999999999999999999998 6777778888888889999999999999999999999999999999999


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      +++|||++++.+++.+.. |...+.........|+++++||.|. ..+.+...++.++++.++++++++||++|+||+++
T Consensus        83 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~i~~~~nk~d~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  160 (177)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEECCCccccccchh-hhhhhcccccccceeeEEEeecccc-ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHH
Confidence            999999999999999888 6666666665778999999999997 45678889999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 028292          168 FEELVLKILDTPSLL  182 (211)
Q Consensus       168 ~~~i~~~~~~~~~~~  182 (211)
                      |++|++.+.+.+...
T Consensus       161 f~~l~~~l~~~p~l~  175 (177)
T d1x3sa1         161 FEELVEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHHHHHTSGGGT
T ss_pred             HHHHHHHHccCcccc
Confidence            999999999876543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=206.50  Aligned_cols=164  Identities=43%  Similarity=0.785  Sum_probs=139.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      +..+||+|+|+++||||||+++++.+.+  ....++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            4679999999999999999999999887  33455667788888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ++|||.+++++|..+..++...... . ....|+++|+||+|+.....+..+++..++..++++++++||++|.||+++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~-~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEY-A-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-S-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhc-c-CCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            9999999999999998855544443 3 4678999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028292          169 EELVLKIL  176 (211)
Q Consensus       169 ~~i~~~~~  176 (211)
                      .+|++.+.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-36  Score=209.35  Aligned_cols=163  Identities=40%  Similarity=0.663  Sum_probs=142.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.+||+|+|++|||||||++++..+.+ ..+.++.+.. ....+.+++..+.+.+||++|+..+...+..+++++|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE-EEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-cceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            568999999999999999999999998 4556666644 45566788999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      |||++++++|+.+..++ ..+.......++|+++|+||+|+.....+..+++..++..+ +++|+++||++|.||+++|.
T Consensus        81 v~d~~~~~sf~~~~~~~-~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLR-EQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHHHH-HHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             eeeccchhhhHhHHHHH-HHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            99999999999999944 44444333678999999999999888888899999998885 68999999999999999999


Q ss_pred             HHHHHHH
Q 028292          170 ELVLKIL  176 (211)
Q Consensus       170 ~i~~~~~  176 (211)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=210.26  Aligned_cols=163  Identities=33%  Similarity=0.544  Sum_probs=141.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+|+|++|||||||+++++++.+ ..+.||.+..+. ..+..++..+.+.+||++|...+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            48999999999999999999999998 677788776654 445678899999999999987764 455678899999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC-CHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQCFEE  170 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~  170 (211)
                      ||++++++|+.+.. |...........+.|+++|+||+|+.+.+.+..+++.++++.++++|+++||++|. ||+++|..
T Consensus        80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1          80 YDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             cccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence            99999999999988 55555544446789999999999998888899999999999999999999999998 59999999


Q ss_pred             HHHHHHcC
Q 028292          171 LVLKILDT  178 (211)
Q Consensus       171 i~~~~~~~  178 (211)
                      |++.+.++
T Consensus       159 l~~~i~~~  166 (168)
T d2atva1         159 LCREVRRR  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=206.20  Aligned_cols=164  Identities=35%  Similarity=0.624  Sum_probs=144.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      +.+||+|+|++|||||||+++|+++.+ ..+.++.+..+. ..+...+..+.+.+||++|.+.+...+..++..++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            459999999999999999999999988 555666665544 446678889999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      |||.+++.+|+.+.. |...+.......++|+++|+||+|+. .+.+..+++.+++..++++|+++||++|+||+++|.+
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eecccccccHHHHHH-HHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999888 77777666556789999999999984 5567788999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028292          171 LVLKILDT  178 (211)
Q Consensus       171 i~~~~~~~  178 (211)
                      |++.+.++
T Consensus       159 i~~~i~~~  166 (166)
T d1ctqa_         159 LVREIRQH  166 (166)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99998753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=213.20  Aligned_cols=163  Identities=34%  Similarity=0.578  Sum_probs=140.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+|+|++|||||||+++++++.+ ..+.++.+.++....+..++..+.+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            48999999999999999999999988 66778888888888898999999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||+++++||+.+.. |+..+....  .++|+++|+||+|+......  ++...++...+++|+++||++|.||+++|.+|
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~~--~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_          83 FDVTSRVTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             EETTSGGGGTTHHH-HHHHHHHHH--CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             cccccccccchhHH-HHHHHhhcc--CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988 555555444  68999999999999665433  34557788889999999999999999999999


Q ss_pred             HHHHHcCCC
Q 028292          172 VLKILDTPS  180 (211)
Q Consensus       172 ~~~~~~~~~  180 (211)
                      ++.+...+.
T Consensus       158 ~~~l~~~~~  166 (170)
T d1i2ma_         158 ARKLIGDPN  166 (170)
T ss_dssp             HHHHHTCTT
T ss_pred             HHHHccCCC
Confidence            999986543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=207.97  Aligned_cols=165  Identities=27%  Similarity=0.402  Sum_probs=140.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC---cccccccccccccCcc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG---QERFRTLTSSYYRGAQ   86 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~d   86 (211)
                      ..+||+++|++|||||||++++.+..+  ....++.+.+.....+.+++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            468999999999999999999998765  44556777778888889999999999999875   3333  5667889999


Q ss_pred             EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      ++|+|||++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++.+++..++++|+++||++|.||++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~  158 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  158 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eeeeeecccccchhhhhhh-hhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHH
Confidence            9999999999999999988 555555444367899999999999988888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028292          167 CFEELVLKILDTP  179 (211)
Q Consensus       167 ~~~~i~~~~~~~~  179 (211)
                      +|.+|++.+..++
T Consensus       159 ~f~~l~~~i~~rr  171 (172)
T d2g3ya1         159 LFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999987554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=213.77  Aligned_cols=168  Identities=39%  Similarity=0.733  Sum_probs=146.4

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC----------eEEEEEEEeCCCcccccccc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG----------KKMKLAIWDTAGQERFRTLT   78 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~g~~~~~~~~   78 (211)
                      .++.+||+|+|++|||||||+++|+++.+ ..+.++.+.++....+.+++          ..+.+.+||++|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            35779999999999999999999999888 55566666666666655433          34679999999999999999


Q ss_pred             cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSA  158 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (211)
                      ..+++++|++|+|||++++.+|+.+.. |+..+........+|+++|+||+|+...+.+..+++.++++.++++++++||
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeee-ccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            999999999999999999999999887 6666655554677899999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcC
Q 028292          159 KTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       159 ~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ++|+||+++|++|++.+.++
T Consensus       161 k~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-35  Score=206.31  Aligned_cols=162  Identities=44%  Similarity=0.694  Sum_probs=145.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .++||+|+|++|||||||+++++++.+ ..+.++.+.++....+..++..+.+.+||++|++.+...++.++.++|++|+
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            479999999999999999999999998 6777888888888899999999999999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC---CcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES---ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      |||.+++.+|+.+..++ ....... ....|+++++||+|+.+   .+.+..+++.++++..+++|+++||++|.||+++
T Consensus        82 v~d~~~~~s~~~~~~~~-~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~  159 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWV-KELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             EEETTCHHHHHHHHHHH-HHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred             EEeCCcccchhhhhhhh-hhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHH
Confidence            99999999999998844 4444444 57889999999999843   4678899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028292          168 FEELVLKI  175 (211)
Q Consensus       168 ~~~i~~~~  175 (211)
                      |.+|++.+
T Consensus       160 F~~i~~~i  167 (170)
T d1ek0a_         160 FLGIGEKI  167 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHh
Confidence            99998664

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-35  Score=204.09  Aligned_cols=163  Identities=54%  Similarity=0.867  Sum_probs=140.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|||||||+++|+.+.+ ..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999988 66788999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL  171 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  171 (211)
                      ||.+++.+|+.+.. |........ ....|++++++|.|+. .+....+++..++..++++++++||++|+||+++|.+|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l  158 (166)
T d1g16a_          82 YDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  158 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCccCHHHHHh-hhhhhhccc-cCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHH
Confidence            99999999999888 444444443 5778899999999974 45567889999999999999999999999999999999


Q ss_pred             HHHHHcC
Q 028292          172 VLKILDT  178 (211)
Q Consensus       172 ~~~~~~~  178 (211)
                      ++.+.++
T Consensus       159 ~~~i~~k  165 (166)
T d1g16a_         159 AKLIQEK  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=205.16  Aligned_cols=165  Identities=30%  Similarity=0.553  Sum_probs=144.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      .+.+||+|+|++|||||||+++|+.+.+ ..+.++.+ +.....+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4679999999999999999999999998 55566665 445566788999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CcEEEe
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG-CLFLEC  156 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  156 (211)
                      +|||++++++|+++..+|...+..+.  .++|+++|+||+|+.+.            ......++..++..++ ++|++|
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhC--CCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            99999999999999887888777654  68999999999997443            3456678888888887 799999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHcC
Q 028292          157 SAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       157 Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ||++|.||+++|..|++.++..
T Consensus       160 SAk~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCCCcCHHHHHHHHHHHHcCC
Confidence            9999999999999999998754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-34  Score=201.09  Aligned_cols=159  Identities=38%  Similarity=0.668  Sum_probs=141.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRGAQGII   89 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   89 (211)
                      +.+||+|+|++|||||||+++++++.+ ..+.++.+.........+......+.+||++|...+.. .++.++.++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999988 66777888888888889999999999999999776654 5677899999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC---CCCHHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT---RVNVEQ  166 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~  166 (211)
                      +|||++++++|+.+.. |+..+.......++|++||+||+|+.+.+.+..+++.++++.++++++++||++   ++||++
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1          81 FVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEeehhhhhhhhhh-hhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHH
Confidence            9999999999999888 666666655567899999999999988888999999999999999999999987   569999


Q ss_pred             HHHHH
Q 028292          167 CFEEL  171 (211)
Q Consensus       167 ~~~~i  171 (211)
                      +|.+|
T Consensus       160 ~F~~l  164 (165)
T d1z06a1         160 IFMTL  164 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99887

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-34  Score=202.60  Aligned_cols=163  Identities=27%  Similarity=0.548  Sum_probs=142.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      .+||+++|++|||||||+++++.+.+ ..+.++.+ +.....+.+++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999998 45556555 45556677889999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cEEEecc
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LFLECSA  158 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa  158 (211)
                      ||+++++||+.+..+|...+....  .++|+++||||+|+..            .+.+..+++..++++.+. +|++|||
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SA  158 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  158 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             eecccCCCHHHHHHHHHHHHhccC--CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeC
Confidence            999999999999987888776655  6899999999999843            456889999999999874 8999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHcC
Q 028292          159 KTRV-NVEQCFEELVLKILDT  178 (211)
Q Consensus       159 ~~~~-~v~~~~~~i~~~~~~~  178 (211)
                      ++|. +++++|+.+...+..+
T Consensus       159 k~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         159 LQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             TTBHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHHHHhcC
Confidence            9998 5999999999988753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=202.23  Aligned_cols=167  Identities=36%  Similarity=0.695  Sum_probs=128.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      +.+||+|+|++|||||||+++|+++++ ..+.++.+........... .....+.+||++|++.+...+..+++.+|+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            358999999999999999999999988 5666777766666555543 44467899999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCCCCc-ccCHHHHHHHHHHhC-CcEEEeccCCCCCH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKESER-VVSKKEGIDFAREYG-CLFLECSAKTRVNV  164 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  164 (211)
                      +|||++++.+|+.+.. |+..+..+.   ...++|+++|+||+|+.+.+ .+..+++.+++..++ ++|+++||++|.||
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          81 LVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  159 (175)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEeecccccccchhhh-cchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCH
Confidence            9999999999999887 666554332   23578999999999997654 467788889999886 79999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028292          165 EQCFEELVLKILDTP  179 (211)
Q Consensus       165 ~~~~~~i~~~~~~~~  179 (211)
                      +++|++|.+.+++++
T Consensus       160 ~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         160 DTAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=197.06  Aligned_cols=165  Identities=40%  Similarity=0.735  Sum_probs=142.4

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (211)
                      ...+||+|+|++|||||||++++.++.+ ..+.++.+...........+..+.+.+||++|.......+..++..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            3568999999999999999999999988 677788888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhcHHHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCCHH
Q 028292           90 MVYDVTRRDTFTNLADIWAKEIDLY---STNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVE  165 (211)
Q Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  165 (211)
                      ++||.+++.+|+.+.. |+..+..+   ....+.|+++|+||+|+. .+.+..+++.+++++.+ ++|+++||++|.||+
T Consensus        84 ~~~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEeeecccccchhhh-HHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            9999999999999887 66555433   224578999999999985 46788999999998865 899999999999999


Q ss_pred             HHHHHHHHHHHc
Q 028292          166 QCFEELVLKILD  177 (211)
Q Consensus       166 ~~~~~i~~~~~~  177 (211)
                      ++|++|++.++.
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-33  Score=199.11  Aligned_cols=166  Identities=36%  Similarity=0.674  Sum_probs=143.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      -+||+|+|.+|||||||+++|+++.+ ..+.++.+.+.....+...+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            37999999999999999999999998 67778889999999999999999999999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCcEEEeccCCCCCHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~  167 (211)
                      ||.+++.+|+.+.. |+..+.....   ..++|+++|+||+|+.+ +.+..++..+++.. .+++++++||++|.||+++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          82 FDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ecccchhhhhcchh-hHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            99999999999887 6655544321   34689999999999855 45667777777655 5689999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028292          168 FEELVLKILDTPS  180 (211)
Q Consensus       168 ~~~i~~~~~~~~~  180 (211)
                      |++|++.+++++.
T Consensus       160 f~~l~~~i~~~~~  172 (184)
T d1vg8a_         160 FQTIARNALKQET  172 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc
Confidence            9999998876543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=5.1e-33  Score=193.76  Aligned_cols=162  Identities=23%  Similarity=0.348  Sum_probs=129.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +.+||+++|++|||||||+++|.+..+..+.++.+....  .+..  ..+.+.+||+||++.++..+..++..++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeee--eccc--cccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            468999999999999999999999888777777775433  3333  447799999999999999999999999999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH---HHHhCCcEEEeccCCCCCHHHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF---AREYGCLFLECSAKTRVNVEQCF  168 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~~v~~~~  168 (211)
                      ||.++..++.....+|...+.... ..++|+++|+||+|+.+...+........   ....++.+++|||++|+||+++|
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcc-cCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            999999999998886766665443 67899999999999965544332221111   11224579999999999999999


Q ss_pred             HHHHHHHHcC
Q 028292          169 EELVLKILDT  178 (211)
Q Consensus       169 ~~i~~~~~~~  178 (211)
                      +||++.+..+
T Consensus       156 ~~l~~~i~~r  165 (165)
T d1ksha_         156 DWLLDDISSR  165 (165)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHcC
Confidence            9999988753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-32  Score=190.43  Aligned_cols=161  Identities=21%  Similarity=0.367  Sum_probs=133.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +.+||+|+|+++||||||+++++++.+....++.+..+ ...+.+++..+.+.+||++|+..+.     +++++|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeE-EEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            35999999999999999999999999966666655544 5667889999999999999976543     67889999999


Q ss_pred             EECCChhcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHH-hCCcEEEeccCCCCCHHH
Q 028292           92 YDVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKE--SERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~  166 (211)
                      ||+++++||+.+.. |+..+....  ....+|+++|+||.|+.  ..+.+..+++..++.. ++++|++|||++|.||++
T Consensus        78 fd~~~~~Sf~~~~~-~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          78 FSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             eecccchhhhhhHH-HHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            99999999999888 676665442  24678999999988874  4566788888888665 568999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028292          167 CFEELVLKILDTP  179 (211)
Q Consensus       167 ~~~~i~~~~~~~~  179 (211)
                      +|..+++.+...+
T Consensus       157 ~F~~l~~~i~~~~  169 (175)
T d2bmja1         157 VFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=194.07  Aligned_cols=157  Identities=25%  Similarity=0.403  Sum_probs=126.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ..+||+++|++|||||||+++|..+.+ ..+.+|.+..+.  .+...  .+.+.+||+||++.+...+..++.+++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeee--eEEEEEeeccccccccccccccccccchhhc
Confidence            368999999999999999999999988 566677775444  34444  4679999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-----FAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |||++++++|+....++...+.... ..++|+++|+||.|+.+...  ..+..+     ++...+++++++||++|+|++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~  153 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNID  153 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             ccccccccccchhhhhhhhhhhhhc-ccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHH
Confidence            9999999999998886665655443 67899999999999854332  222222     223345689999999999999


Q ss_pred             HHHHHHHHHH
Q 028292          166 QCFEELVLKI  175 (211)
Q Consensus       166 ~~~~~i~~~~  175 (211)
                      ++|+||++.+
T Consensus       154 e~~~~l~~~~  163 (164)
T d1zd9a1         154 ITLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHcc
Confidence            9999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=5.4e-33  Score=195.56  Aligned_cols=159  Identities=25%  Similarity=0.347  Sum_probs=126.1

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      +.++.+||+++|++|||||||+++|.++.+....++.+.+..  .+...  .+.+.+||++|++.+...+..++..+|++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~--~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE--EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEE--EeccC--CeeEeEeeccccccchhHHHHHhhcccee
Confidence            445679999999999999999999999988666666664433  33333  46799999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHhCCcEEEeccCCCCC
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-----FAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~  163 (211)
                      |+|||++++.++..+..++........ ..++|+++|+||+|+.+...  .....+     .+....+.++++||++|+|
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            999999999999999885555544333 67899999999999965433  222221     2223356799999999999


Q ss_pred             HHHHHHHHHHH
Q 028292          164 VEQCFEELVLK  174 (211)
Q Consensus       164 v~~~~~~i~~~  174 (211)
                      ++++|+||++.
T Consensus       165 v~e~~~~l~~~  175 (176)
T d1fzqa_         165 VQDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=199.82  Aligned_cols=163  Identities=23%  Similarity=0.341  Sum_probs=126.0

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (211)
                      ...+.+||+++|++|||||||++++.+..+....++.+.......  .  ..+.+.+||++|++.+...+..++..+|++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~--~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS--Y--KNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEE--E--TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEe--e--CCEEEEEEecccccccchhHHhhhccceeE
Confidence            345689999999999999999999998888666677775544333  2  347789999999999999999999999999


Q ss_pred             EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHhCCcEEEeccCCCCC
Q 028292           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-----FAREYGCLFLECSAKTRVN  163 (211)
Q Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~  163 (211)
                      ++|||++++.++.....+|...+... ...++|++||+||+|+.+..  ..+++.+     .+...++.+++|||++|+|
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~-~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEeeecccccchhHHHHHHHHHHhh-ccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            99999999999998888555544433 36789999999999985432  2333322     2233456899999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 028292          164 VEQCFEELVLKILDT  178 (211)
Q Consensus       164 v~~~~~~i~~~~~~~  178 (211)
                      |+++|+||++.+.++
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.98  E-value=1.5e-32  Score=192.77  Aligned_cols=160  Identities=25%  Similarity=0.392  Sum_probs=124.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.+||+++|++|||||||++++.++.+....++.+....  ...  ...+.+.+||+||...++..+..+++.++++|+
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEE--EEE--ETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEE--Eee--ccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            4579999999999999999999998887555555554432  222  244789999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc---CHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---SKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      |+|+++.+++..+..+|...+.... ..+.|+++++||+|+.+....   ........+...++.+++|||++|+||+++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~-~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcc-cccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            9999999999999886666555443 578999999999998643221   111111222334567999999999999999


Q ss_pred             HHHHHHHH
Q 028292          168 FEELVLKI  175 (211)
Q Consensus       168 ~~~i~~~~  175 (211)
                      |+||.+.+
T Consensus       165 ~~~l~~~~  172 (173)
T d1e0sa_         165 LTWLTSNY  172 (173)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=5.8e-30  Score=176.93  Aligned_cols=157  Identities=22%  Similarity=0.380  Sum_probs=121.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   93 (211)
                      +||+|+|++|||||||+++|.++++....+.....    ....+...+.+.+||++|...+...+..++..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            68999999999999999999998874433333322    22334466789999999999999999999999999999999


Q ss_pred             CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc---CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE  170 (211)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  170 (211)
                      .+++.++.....++........ ...+|+++++||.|+......   .......++...+++++++||++|+||+++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ecChHHHHHHHHHHHHHHHhhc-ccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999998885555554433 678999999999998654322   111122233445678999999999999999999


Q ss_pred             HHHHH
Q 028292          171 LVLKI  175 (211)
Q Consensus       171 i~~~~  175 (211)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=2.7e-28  Score=171.39  Aligned_cols=159  Identities=23%  Similarity=0.334  Sum_probs=119.7

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.+||+|+|.+|||||||++++.+.++....++.+.......  .  ....+.+||+++.......+..++..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV--I--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEE--E--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEe--e--cceEEEEeccccccccccchhhhhccceeeee
Confidence            4569999999999999999999999988655555554333222  2  34678999999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~  165 (211)
                      ++|.++..++......+. .........+.|+++|+||+|+.....  ..+..+..     ...+++++++||++|+|++
T Consensus        89 v~d~~d~~~~~~~~~~~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          89 VVDSTDRERISVTREELY-KMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEETTCTTTHHHHHHHHH-HHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ecccccccchhhhhhhhh-hhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999988776333 333334467899999999999855433  22222222     2345689999999999999


Q ss_pred             HHHHHHHHHHH
Q 028292          166 QCFEELVLKIL  176 (211)
Q Consensus       166 ~~~~~i~~~~~  176 (211)
                      ++++||.+++.
T Consensus       166 e~~~~L~~~lk  176 (177)
T d1zj6a1         166 QGLEWMMSRLK  176 (177)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998863

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=2.9e-27  Score=164.51  Aligned_cols=163  Identities=22%  Similarity=0.366  Sum_probs=127.2

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+.+||+++|.+|||||||+++++++.+....++.+....  ....  ..+.+.+||.+|...+...+...+...+++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeee--eecc--CceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            4569999999999999999999999988665565553332  2222  34678899999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc---cCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      ++|..+..++......+........ ....|+++++||.|+.....   +.......++...+++++++||++|+||+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhc-cccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            9999999888888775555554433 67899999999999865432   2122222334445678999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028292          168 FEELVLKILDT  178 (211)
Q Consensus       168 ~~~i~~~~~~~  178 (211)
                      |++|++.+.++
T Consensus       158 ~~~l~~~l~~k  168 (169)
T d1upta_         158 MEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999988765

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.4e-27  Score=167.89  Aligned_cols=165  Identities=19%  Similarity=0.180  Sum_probs=115.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYR   83 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   83 (211)
                      +.-.|+|+|.+|||||||+|+|++..........+++..............+.+|||||......        .....+.
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            44479999999999999999999887644444444433333322222335688999999654332        2234468


Q ss_pred             CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCC
Q 028292           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRV  162 (211)
Q Consensus        84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  162 (211)
                      ++|++|+|+|++++.....  ..+...++...  .++|+++|+||+|+....   .+....+....+ ..++++||++|.
T Consensus        84 ~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~--~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED--ELVARALKPLV--GKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH--HHHHHHHGGGT--TTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccceeeeechhhhhcccc--cchhhheeccc--cchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence            8999999999998755433  33555555443  568999999999985432   222333444444 478999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCccc
Q 028292          163 NVEQCFEELVLKILDTPSLLS  183 (211)
Q Consensus       163 ~v~~~~~~i~~~~~~~~~~~~  183 (211)
                      |+++++++|.+.+.+.++.++
T Consensus       157 gi~~L~~~i~~~lpe~p~~~p  177 (178)
T d1wf3a1         157 QVAELKADLLALMPEGPFFYP  177 (178)
T ss_dssp             HHHHHHHHHHTTCCBCCCSSC
T ss_pred             CHHHHHHHHHHhCCCCCCCCC
Confidence            999999999998877766655

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7e-26  Score=156.73  Aligned_cols=152  Identities=24%  Similarity=0.306  Sum_probs=119.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~   94 (211)
                      ||+++|++|||||||+++|.++.+..+.++.+.....    .......+.+||++|...+...+..++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEE----LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEE----ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEE----eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            7999999999999999999999987777776644432    233445688999999999999999999999999999999


Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH------------HHhCCcEEEeccCCCC
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA------------REYGCLFLECSAKTRV  162 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~  162 (211)
                      ++..++..... +...........+.|+++++||.|+....  ...+..+..            ....+.+++|||++|+
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          78 ADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TCGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             cchhhhhhhhH-HHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999988887 44444444447889999999999985432  233322221            1223468999999999


Q ss_pred             CHHHHHHHHHH
Q 028292          163 NVEQCFEELVL  173 (211)
Q Consensus       163 ~v~~~~~~i~~  173 (211)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999965

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.93  E-value=5.5e-25  Score=155.13  Aligned_cols=158  Identities=20%  Similarity=0.282  Sum_probs=114.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      .+..||+++|.+|||||||+++|.++.+....++.+.+....  .+.+  ..+.+||+.+...+...+...+...+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--TIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE--EETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEE--Eecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            467899999999999999999999998866666666555443  3344  457889999999999999999999999999


Q ss_pred             EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----------------hCCcE
Q 028292           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-----------------YGCLF  153 (211)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  153 (211)
                      ++|.++...+......+........ ..++|+++++||.|+...  ....+..+....                 .++.+
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccc-cCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999999999887774544443333 678999999999998543  233333333321                 13468


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028292          154 LECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       154 ~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      ++|||++|+|++++|+||.+++
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.1e-26  Score=160.58  Aligned_cols=151  Identities=21%  Similarity=0.214  Sum_probs=108.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGA   85 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~   85 (211)
                      +||+++|.+|||||||+|+|++..........+++.......+......+.++|+||......        ....++..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            799999999999999999999887644444444443333333333345688999999544321        123446789


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |++++++|..+..+++.... |...+...  ..++|+++|+||+|+.+......       ...+.+++++||++|.|++
T Consensus        82 d~~i~~~d~~~~~~~~~~~~-~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~~~-------~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEI-WPEFIARL--PAKLPITVVRNKADITGETLGMS-------EVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHH-CHHHHHHS--CTTCCEEEEEECHHHHCCCCEEE-------EETTEEEEECCTTTCTTHH
T ss_pred             cccceeeccccccchhhhhh-hhhhhhhc--ccccceeeccchhhhhhhHHHHH-------HhCCCcEEEEECCCCCCHH
Confidence            99999999999877666554 55555443  35799999999999854332111       1235689999999999999


Q ss_pred             HHHHHHHHH
Q 028292          166 QCFEELVLK  174 (211)
Q Consensus       166 ~~~~~i~~~  174 (211)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=4.4e-25  Score=155.27  Aligned_cols=161  Identities=21%  Similarity=0.127  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCccE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYRGAQG   87 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~   87 (211)
                      +|+++|.+|||||||+|+|++..........++...............+.+|||||.....       ......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            5899999999999999999987662222222222222333334444568899999943211       112234678899


Q ss_pred             EEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292           88 IIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      +++++|..... +..... +...+... ....++|+++|+||+|+.....  .++..+.....+.+++.+||++|.|+++
T Consensus        83 ~~~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          83 LLYVLDAADEP-LKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEETTSCH-HHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhccccccc-ccchhh-hhhhhhccccccchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999986542 222222 22222211 1124589999999999965433  3344555666788999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028292          167 CFEELVLKILDTP  179 (211)
Q Consensus       167 ~~~~i~~~~~~~~  179 (211)
                      +++.|.+.+....
T Consensus       159 L~~~i~~~l~~~~  171 (180)
T d1udxa2         159 LKEALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999886543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=7.1e-25  Score=155.86  Aligned_cols=157  Identities=19%  Similarity=0.189  Sum_probs=114.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +.+||+++|+.|||||||+++|....+    ++.+.  ...  .++...+.+.+||++|++.+...|..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~--~~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGI--VET--HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSE--EEE--EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC----CCccE--EEE--EEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            468999999999999999999987766    33332  222  3333456789999999999999999999999999999


Q ss_pred             EECCChhcH----------HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC---------------CcccCHHHHHHHH
Q 028292           92 YDVTRRDTF----------TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES---------------ERVVSKKEGIDFA  146 (211)
Q Consensus        92 ~d~~~~~s~----------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---------------~~~~~~~~~~~~~  146 (211)
                      +|.++..+|          ......|...+.... ..+.|+++++||+|+..               .......++..+.
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~-~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW-FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGG-GTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccc-cCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            999988765          233343666655444 67899999999999611               0112222222211


Q ss_pred             H----H-------hCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          147 R----E-------YGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       147 ~----~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      .    .       ..+.++++||+++.||+++|+.+.+.+.+
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            1    1       13457789999999999999999988764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.1e-25  Score=160.73  Aligned_cols=161  Identities=19%  Similarity=0.149  Sum_probs=121.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +.+||+++|+.|||||||++++....+ .+.||.|..+.  .+  ....+.+.+||++|++.+...|..++..+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEY--PF--DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEE--EE--ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEE--EE--eccceeeeeccccccccccccccccccccceeeEe
Confidence            468999999999999999999998887 46688885543  23  33456789999999999999999999999999999


Q ss_pred             EECCChhc----------HHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----------------cccCHHHHHHH
Q 028292           92 YDVTRRDT----------FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE----------------RVVSKKEGIDF  145 (211)
Q Consensus        92 ~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~  145 (211)
                      +|.++..+          +......|...+.... ..+.|+++++||.|+...                .......+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPW-FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG-GSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhh-ccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99987642          3333444777776655 678999999999997221                11122222222


Q ss_pred             HHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          146 ARE----------YGCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       146 ~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                      ...          ..+.++++||++|+||+++|+.|.+.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            211          124578999999999999999998888753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.5e-24  Score=153.23  Aligned_cols=163  Identities=23%  Similarity=0.216  Sum_probs=108.1

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccccc---------
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFR---------   75 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~---------   75 (211)
                      +++....+||+|+|++|||||||+|+|++..........+++..  ...+.+++  ..+.++|+||.....         
T Consensus         2 ~p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~   79 (186)
T d1mkya2           2 KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEK   79 (186)
T ss_dssp             CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CC
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCcccccccccccccc
Confidence            45556789999999999999999999998765222222232222  22344444  357888999953322         


Q ss_pred             ---ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh---
Q 028292           76 ---TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY---  149 (211)
Q Consensus        76 ---~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---  149 (211)
                         ......+..+|++++|+|++.+...+.. . +...+.    ..+.|+++|+||+|+.........+..+.....   
T Consensus        80 ~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~-~-~~~~~~----~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (186)
T d1mkya2          80 YSNYRVVDSIEKADVVVIVLDATQGITRQDQ-R-MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF  153 (186)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG
T ss_pred             chhHHHHHHHhcCCEEEEeecccccchhhHH-H-HHHHHH----HcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcc
Confidence               2233345788999999999876543321 1 333343    357899999999998665554444444433332   


Q ss_pred             --CCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          150 --GCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       150 --~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                        ..+++++||++|.|+++++++|.+.+..
T Consensus       154 ~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         154 IDYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             GTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence              3479999999999999999999877654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=6.2e-25  Score=153.26  Aligned_cols=158  Identities=20%  Similarity=0.181  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------cccccccccCc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------RTLTSSYYRGA   85 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~   85 (211)
                      .|+|+|++|||||||+++|++..........+.+.......+......+.+||++|....         ......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            589999999999999999998776545555555544444444445567899999993221         12233446789


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE  165 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  165 (211)
                      |+++++.|.+........ . +...+.    ..++|+++|+||+|+.+.  ...+...++.......++++||++|.|++
T Consensus        82 d~i~~~~~~~~~~~~~~~-~-~~~~l~----~~~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          82 DLVLFVVDGKRGITKEDE-S-LADFLR----KSTVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             SEEEEEEETTTCCCHHHH-H-HHHHHH----HHTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cEEEEeeccccccccccc-c-cccccc----cccccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            999999999876554432 2 444444    356899999999998432  11222222222233478999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 028292          166 QCFEELVLKILDTPS  180 (211)
Q Consensus       166 ~~~~~i~~~~~~~~~  180 (211)
                      +++++|.+.+.+...
T Consensus       154 ~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         154 TMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999999877654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=4.1e-24  Score=150.07  Aligned_cols=161  Identities=15%  Similarity=0.117  Sum_probs=107.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------cceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP------TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (211)
                      +.++|.++|.+|+|||||+|+|++.......+      ..+.+.......+......+.++|+||+..+.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            56899999999999999999999654311111      111111111111122235688999999998888888888999


Q ss_pred             cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--HHHHHHHHH----hCCcEEEeccC
Q 028292           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK--KEGIDFARE----YGCLFLECSAK  159 (211)
Q Consensus        86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~----~~~~~~~~Sa~  159 (211)
                      |++++++|+++....+...  ....+.    ..++|+++|+||+|+........  +...++...    .+.+++++||+
T Consensus        84 d~~ilv~d~~~g~~~~~~~--~~~~~~----~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQTGE--HMLILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             CEEEEEEETTTCSCHHHHH--HHHHHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             cccccccccccccchhhhh--hhhhhh----hcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            9999999999875443322  222232    36789999999999865433221  111222222    23589999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 028292          160 TRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~  178 (211)
                      +|+|++++++.|.+.+.+.
T Consensus       158 ~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhcCCcc
Confidence            9999999999999988754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.6e-23  Score=149.40  Aligned_cols=159  Identities=21%  Similarity=0.236  Sum_probs=109.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv   91 (211)
                      +.+||+++|++|||||||++++...  ..+.||.|...  ..+.+  ....+.+||++|++.+...|..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~f~--~~~~pTiG~~~--~~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMRII--HGQDPTKGIHE--YDFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH--HSCCCCSSEEE--EEEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC--CCCCCeeeeEE--EEEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            4689999999999999999999422  56677888433  33443  446789999999999999999999999999999


Q ss_pred             EECCChhc----------HHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----------------cccCHHHHHHH
Q 028292           92 YDVTRRDT----------FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE----------------RVVSKKEGIDF  145 (211)
Q Consensus        92 ~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~  145 (211)
                      +|.++..+          ++.....|...+.... ..++|+++++||+|+.+.                ..-..+.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV-FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG-GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChh-hcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            99987533          4444443554454333 678999999999997211                01122333333


Q ss_pred             HHH-----------hCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          146 ARE-----------YGCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       146 ~~~-----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                      ...           ..+.++++||+++.+|+++|+.+.+.+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            322           12456789999999999999999887764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.4e-24  Score=148.58  Aligned_cols=150  Identities=19%  Similarity=0.148  Sum_probs=102.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccccccC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSSYYRG   84 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~   84 (211)
                      +||+++|.+|||||||+|+|++.+........+.+.......+......+.+|||||.....         ......+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            69999999999999999999987764444444443333232222234568899999942211         111223578


Q ss_pred             ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV  164 (211)
Q Consensus        85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  164 (211)
                      +|++++|+|++++...+....  ...      ....++++++||.|+....  ..++..+ ....+.+++++||++|.|+
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~--~~~------~~~~~~i~~~~k~d~~~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKI--LER------IKNKRYLVVINKVDVVEKI--NEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHH--HHH------HTTSSEEEEEEECSSCCCC--CHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             CCEEEEEEeCCCCcchhhhhh--hhh------cccccceeeeeeccccchh--hhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            999999999999876654332  111      2457899999999986543  2333322 2234578999999999999


Q ss_pred             HHHHHHHHHH
Q 028292          165 EQCFEELVLK  174 (211)
Q Consensus       165 ~~~~~~i~~~  174 (211)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=9.1e-24  Score=148.86  Aligned_cols=152  Identities=20%  Similarity=0.212  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------------ccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------------RTLTS   79 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~~   79 (211)
                      .|+++|.+|||||||+|+|++.+. .....+|++.....+...+    +.+|||||....               .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~-~~~~~~g~T~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCEeeccccccccc----ceecccCCceeccccccccccccchhhhhhhh
Confidence            589999999999999999998776 3445556655555554443    578999994111               11233


Q ss_pred             ccccCccEEEEEEECCChhcHHHHHH---------HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC
Q 028292           80 SYYRGAQGIIMVYDVTRRDTFTNLAD---------IWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG  150 (211)
Q Consensus        80 ~~~~~~d~~ilv~d~~~~~s~~~~~~---------~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  150 (211)
                      ..++.+|++++|+|.+++........         .+...+.    ..++|+++|+||+|+.........   .+.....
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~----~~~~p~iiv~NK~D~~~~~~~~~~---~~~~~~~  149 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR----ELDIPTIVAVNKLDKIKNVQEVIN---FLAEKFE  149 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH----HTTCCEEEEEECGGGCSCHHHHHH---HHHHHHT
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH----HcCCCEEEEEeeeehhhhHHHHHH---HHHHHhc
Confidence            44578899999999976533222110         1222222    457999999999997543322111   1222222


Q ss_pred             -------CcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          151 -------CLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       151 -------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                             ..++++||++|.|+++++++|.+.+.++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                   2488999999999999999999988764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.1e-22  Score=142.96  Aligned_cols=121  Identities=18%  Similarity=0.270  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEEEEEE
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYD   93 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~ilv~d   93 (211)
                      +|+++|++|||||||+++|+++.+....++.+.++....+. ....+.+.+||++|++.+. ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            69999999999999999999998866666666555443332 4456789999999998775 567788899999999999


Q ss_pred             CCChhcH-HHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcc
Q 028292           94 VTRRDTF-TNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERV  136 (211)
Q Consensus        94 ~~~~~s~-~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~  136 (211)
                      +++..++ .....++...+... ....++|++|++||+|+.....
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            9998764 44444455554432 2246689999999999976443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=4.1e-23  Score=145.71  Aligned_cols=160  Identities=18%  Similarity=0.112  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCCCCC-CCcceeeeEEEEEEECCeEEEEEEEeCCCccccc----cccc---ccccCcc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR----TLTS---SYYRGAQ   86 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~---~~~~~~d   86 (211)
                      +|+++|.+|||||||+|+|++...... .+....+.......+.+ ...+.+|||||.....    ....   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            689999999999999999998775211 11212222222333322 2357899999953211    1111   2235678


Q ss_pred             EEEEEEECCChhcHHHH--HHHHHH-HHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--hCCcEEEeccCCC
Q 028292           87 GIIMVYDVTRRDTFTNL--ADIWAK-EIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE--YGCLFLECSAKTR  161 (211)
Q Consensus        87 ~~ilv~d~~~~~s~~~~--~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~  161 (211)
                      .++++++..........  ...+.. .........++|+++|+||+|+.+..    +....+...  .+.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCC
Confidence            88888877654322211  111111 11122224578999999999985432    122223333  3578999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC
Q 028292          162 VNVEQCFEELVLKILDTP  179 (211)
Q Consensus       162 ~~v~~~~~~i~~~~~~~~  179 (211)
                      .|+++++++|.+.+.+.+
T Consensus       158 ~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         158 EGLRELLFEVANQLENTP  175 (185)
T ss_dssp             STTHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHhhhhCC
Confidence            999999999999986544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=7.2e-22  Score=140.36  Aligned_cols=159  Identities=14%  Similarity=0.123  Sum_probs=97.9

Q ss_pred             ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-----------
Q 028292            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-----------   74 (211)
Q Consensus         7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------   74 (211)
                      +-+.....+|+|+|.+|||||||+|+|++... .......+.+..........   .+.+.|++|....           
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhh
Confidence            44445556999999999999999999998654 45555555555544444433   2344566652111           


Q ss_pred             --cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----
Q 028292           75 --RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE----  148 (211)
Q Consensus        75 --~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----  148 (211)
                        ...+...+..+|++++++|++.+...... . +++.+.    ..++|+++|+||+|+.+...+.. ....+...    
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~-~-~~~~l~----~~~~piivv~NK~D~~~~~~~~~-~~~~~~~~l~~~  166 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPSNDDV-Q-MYEFLK----YYGIPVIVIATKADKIPKGKWDK-HAKVVRQTLNID  166 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHH----HTTCCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCC
T ss_pred             hHHhhhhccccchhhhhhhhhcccccccccc-c-cccccc----cccCcceechhhccccCHHHHHH-HHHHHHHHhccc
Confidence              11223345678999999999876433222 2 444454    35689999999999855443322 22222222    


Q ss_pred             hCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          149 YGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       149 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      ...+++.+||++|.|+++++++|.+.+
T Consensus       167 ~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         167 PEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            345799999999999999999998876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=6.2e-22  Score=143.80  Aligned_cols=157  Identities=17%  Similarity=0.097  Sum_probs=102.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCCCCC-CCCccee--eeEEEE--------------EEECCeEEEEEEEeCCCcccccccc
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGV--DFKIKH--------------VALGGKKMKLAIWDTAGQERFRTLT   78 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~--~~~~~~--------------~~~~~~~~~~~i~D~~g~~~~~~~~   78 (211)
                      |+|+|++++|||||+++|++..... .......  ......              ..+......+.|+||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998753211 0000000  000000              1122334568899999999998888


Q ss_pred             cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH-------------------
Q 028292           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK-------------------  139 (211)
Q Consensus        79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-------------------  139 (211)
                      ...+..+|++|+|+|+.+.-......  ....+.    ..++|+++++||+|+........                   
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~--~~~~~~----~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQE--ALNILR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL  161 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchhH--HHHHhh----cCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence            88889999999999998764433322  333333    46789999999999854322110                   


Q ss_pred             -HHHHHHHH---Hh---------------CCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292          140 -KEGIDFAR---EY---------------GCLFLECSAKTRVNVEQCFEELVLKILDT  178 (211)
Q Consensus       140 -~~~~~~~~---~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~  178 (211)
                       ....+...   ..               .++++++||.+|.|++++++.|.....+.
T Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence             00000011   00               13689999999999999999998877553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=7.1e-22  Score=140.36  Aligned_cols=161  Identities=14%  Similarity=0.120  Sum_probs=105.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCC--CCcce----eeeEEEEE-------------------EECCeEEEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIG----VDFKIKHV-------------------ALGGKKMKLAI   65 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~~~----~~~~~~~~-------------------~~~~~~~~~~i   65 (211)
                      ...+||+++|+.++|||||+++|++......  ....|    ..+.....                   ........+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            4678999999999999999999987432111  00111    11111111                   01223466899


Q ss_pred             EeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHH
Q 028292           66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGI  143 (211)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~  143 (211)
                      +|+||+..|.......+..+|++++|+|+.+........+ .+......   ...+++++.||+|+.+....  ..+...
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e-~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHH-HHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHH
Confidence            9999999998888888899999999999988642222222 22333321   23457888999998654322  122333


Q ss_pred             HHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          144 DFAREY---GCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       144 ~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      ++....   .++++++||++|+|++++++.|.+.+
T Consensus       159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            333333   35899999999999999999988754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=5e-22  Score=143.75  Aligned_cols=159  Identities=19%  Similarity=0.183  Sum_probs=115.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il   90 (211)
                      ...+||+++|+.|||||||++++....+   .||.|.  ....+.+++  +.+.+||++|++.++..|..++.+++++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~--~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGI--FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSC--EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCe--EEEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            3568999999999999999999976543   467774  344455554  678999999999999999999999999999


Q ss_pred             EEECCChh----------cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc------------------------
Q 028292           91 VYDVTRRD----------TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------------------  136 (211)
Q Consensus        91 v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------------------  136 (211)
                      ++|.++..          ...+....|...+.... ..++|++|++||+|+.+.+.                        
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~-~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW-LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGG-GSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChh-hCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            99998642          23344444666665443 57899999999999832110                        


Q ss_pred             ------cCHHHHHHHHH-----Hh--------CCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292          137 ------VSKKEGIDFAR-----EY--------GCLFLECSAKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       137 ------~~~~~~~~~~~-----~~--------~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  177 (211)
                            ....++.++..     ..        .+.++++||+++.+|+.+|+.+.+.+.+
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                  01222322221     11        1335689999999999999988777664

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.3e-21  Score=133.92  Aligned_cols=163  Identities=20%  Similarity=0.131  Sum_probs=105.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------RTLTSS   80 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   80 (211)
                      +-=.|+++|.+|||||||+|+|++.+.....  ..............+.  ..+..+|++|....         ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            3346999999999999999999988762222  2222222222223333  34566788873221         122333


Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAK  159 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  159 (211)
                      ....+++++++.|..+......  . +...+.    ....|.++++||.|..............+....+ .+++++||+
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~~--~-~~~~l~----~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDDE--M-VLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHHH--H-HHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             chhhcceeEEEEecCccchhHH--H-HHHHhh----hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCc
Confidence            4567788889999876532221  1 222222    4567899999999986654433444445555555 489999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCccc
Q 028292          160 TRVNVEQCFEELVLKILDTPSLLS  183 (211)
Q Consensus       160 ~~~~v~~~~~~i~~~~~~~~~~~~  183 (211)
                      +|.|+++++++|.+.+.+.+..++
T Consensus       155 ~g~gi~~L~~~i~~~lpe~~~~yp  178 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHLPEATHHFP  178 (179)
T ss_dssp             TTTTHHHHHHHHHTTCCBCCCSSC
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999998877766554

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=2.1e-21  Score=137.35  Aligned_cols=157  Identities=16%  Similarity=0.081  Sum_probs=109.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC---------------CCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT---------------FEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (211)
                      -+||+++|+.++|||||+++|++..               ........|.+.......+......++++|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            4899999999999999999997520               0112233345555555566666678999999999999888


Q ss_pred             ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc---CHHHHHHHHHHhC----
Q 028292           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---SKKEGIDFAREYG----  150 (211)
Q Consensus        78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~----  150 (211)
                      ....+..+|++|+|+|+.+...-+...  ....+..   ....|+||++||+|+......   ...++..+....+    
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT~~--~~~~a~~---~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhHHH--HHHHHHH---hcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            888889999999999999875443322  2223322   244678999999998653321   1223444444443    


Q ss_pred             -CcEEEeccCCC----------CCHHHHHHHHHHH
Q 028292          151 -CLFLECSAKTR----------VNVEQCFEELVLK  174 (211)
Q Consensus       151 -~~~~~~Sa~~~----------~~v~~~~~~i~~~  174 (211)
                       ++++++||++|          .++.++++.|.+.
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence             57999999988          4778888777654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=4.9e-20  Score=131.72  Aligned_cols=161  Identities=17%  Similarity=0.122  Sum_probs=102.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCC----CC----CcceeeeEEEEEEE----------------------CCeEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE----LS----PTIGVDFKIKHVAL----------------------GGKKM   61 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~----~~----~~~~~~~~~~~~~~----------------------~~~~~   61 (211)
                      +.+||+++|+.++|||||+++|++.....    ..    ...+..........                      .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            44899999999999999999998632200    00    00111101000000                      11224


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--
Q 028292           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK--  139 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--  139 (211)
                      .+.++|+||+..|.......+..+|++|+|+|+.+.-.-....+ .......   ..-.|++|++||+|+........  
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e-~~~~~~~---~~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGI---IGVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHH-HHHHHHH---cCCceeeeccccCCCccchHHHHHH
Confidence            68999999999998877778889999999999988621112222 2222222   23358899999999965432211  


Q ss_pred             HHHHHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          140 KEGIDFAREY---GCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       140 ~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      .+...+....   +++++++||++|.|++++++.|.+++.
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            1122222222   368999999999999999999887654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=3e-20  Score=132.36  Aligned_cols=142  Identities=18%  Similarity=0.122  Sum_probs=94.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-----C--C---------CCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----E--E---------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----~--~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (211)
                      +.|||+++|++++|||||+++|+...-     .  .         .....|.+.......+......++|+||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            458999999999999999999973200     0  0         00111444444444555555678999999999999


Q ss_pred             ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHhC-
Q 028292           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREYG-  150 (211)
Q Consensus        76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-  150 (211)
                      ......+..+|++|+|+|+.+....+....  ...+.    ..++| ++|++||+|+.+....   ..+++..+....+ 
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~--~~~~~----~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTREH--ILLAR----QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHHH--HHHHH----HTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHHH--HHHHH----HcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            888888999999999999998866654332  22333    34665 6778999998553321   1223333333332 


Q ss_pred             ----CcEEEeccC
Q 028292          151 ----CLFLECSAK  159 (211)
Q Consensus       151 ----~~~~~~Sa~  159 (211)
                          ++++..|+.
T Consensus       156 ~~~~i~~i~~sa~  168 (204)
T d2c78a3         156 PGDEVPVIRGSAL  168 (204)
T ss_dssp             CTTTSCEEECCHH
T ss_pred             Ccccceeeeeech
Confidence                467888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.79  E-value=1.1e-18  Score=125.51  Aligned_cols=152  Identities=19%  Similarity=0.149  Sum_probs=99.8

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--C------------------------------CCCCcceeeeEEEEEE
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E------------------------------ELSPTIGVDFKIKHVA   55 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~------------------------------~~~~~~~~~~~~~~~~   55 (211)
                      -+....+||+++|+.++|||||+.+|+...-  .                              ......+.+.......
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            3456889999999999999999999974211  0                              0011112222222333


Q ss_pred             ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCC-cEEEEEeCCCCCCC
Q 028292           56 LGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC-IKLLVGNKVDKESE  134 (211)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~  134 (211)
                      +......+.|+|+||+..|.......+..+|++|+|+|+.+...-+....  .....    ..++ .+|++.||+|+.+.
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~--~~~~~----~~gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH--SYIAS----LLGIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH--HHHHH----HTTCCEEEEEEECTTTTTS
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH--HHHHH----HcCCCEEEEEEEccccccc
Confidence            33344578999999999999888888899999999999988754443322  22222    2454 47888999999664


Q ss_pred             cccCHH----HHHHHHHHhC-----CcEEEeccCCCCCHH
Q 028292          135 RVVSKK----EGIDFAREYG-----CLFLECSAKTRVNVE  165 (211)
Q Consensus       135 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~  165 (211)
                      .+....    +...+....+     ++++++||.+|+|+.
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            432222    3334444443     367999999999884

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.4e-18  Score=119.99  Aligned_cols=167  Identities=13%  Similarity=0.032  Sum_probs=90.6

Q ss_pred             CCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcce-eeeEEEEEEECCeEEEEEEEeCCCccccc------
Q 028292            3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIG-VDFKIKHVALGGKKMKLAIWDTAGQERFR------   75 (211)
Q Consensus         3 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------   75 (211)
                      ..+.+.+.+..++|+++|.+|||||||+|+|++.+........+ +...............+..++.++.....      
T Consensus         6 ~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (188)
T d1puia_           6 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKW   85 (188)
T ss_dssp             SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHH
T ss_pred             CChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhh
Confidence            34567888899999999999999999999999887633332222 22222222222222222222222211111      


Q ss_pred             ----ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHh
Q 028292           76 ----TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAREY  149 (211)
Q Consensus        76 ----~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~  149 (211)
                          ..........+.++.+.+.......... . +.....    ....++++++||+|+.......  .+...+....+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~  159 (188)
T d1puia_          86 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-Q-MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF  159 (188)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhhhhhhhhhheeEEEEeecccccchhHHH-H-HHHHhh----hccccccchhhhhhccCHHHHHHHHHHHHHHHHhh
Confidence                1111112344566666777665433332 2 333333    3567899999999985533222  11222222222


Q ss_pred             --CCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          150 --GCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       150 --~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                        ..+++.+||++|.|++++++.|.+.+
T Consensus       160 ~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         160 NGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence              24789999999999999999987654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=2.2e-17  Score=121.65  Aligned_cols=116  Identities=18%  Similarity=0.216  Sum_probs=80.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCC--CCC---------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDT--FEE---------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (211)
                      +.-||+++|+.++|||||+.+|+...  ...               .....+.++......+......++|+||||+.+|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            44589999999999999999997421  100               0111122222222233334456899999999999


Q ss_pred             cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES  133 (211)
Q Consensus        75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  133 (211)
                      .......+..+|++|+|+|+.+.-.-..... |. ...    ..++|.++++||+|.+.
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~-~a~----~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WR-QAE----KYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHH-HH-HHH----TTTCCEEEEEECTTSTT
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHH-HH-HHH----HcCCCEEEEEecccccc
Confidence            9999999999999999999999855544333 32 222    57899999999999743

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.4e-18  Score=122.99  Aligned_cols=119  Identities=22%  Similarity=0.260  Sum_probs=80.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc----ccCccE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY----YRGAQG   87 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d~   87 (211)
                      +..+|+++|++|||||||+|+|++..+..   +.+.+..  ...+......+.+||+||+..+...+..+    ....+.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~---~tt~~~~--~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEP--LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC---BCCCSSC--EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEecce--EEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            34589999999999999999999987632   2222222  23334445568899999988766554443    345688


Q ss_pred             EEEEEECCC-hhcHHHHHHHHHHHHH--hhcCCCCCcEEEEEeCCCCCCCc
Q 028292           88 IIMVYDVTR-RDTFTNLADIWAKEID--LYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        88 ~ilv~d~~~-~~s~~~~~~~~~~~~~--~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      +++++|+.+ ..+++....++...+.  ......++|+++|+||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            899999765 5566666553332221  22236789999999999986543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=6.5e-18  Score=122.72  Aligned_cols=150  Identities=17%  Similarity=0.118  Sum_probs=98.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCcceeeeEEEEEEECCeEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E----------------------------ELSPTIGVDFKIKHVALGGKKM   61 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      ..+||+++|+.++|||||+.+|+...-  .                            ......|.+.......+.....
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            458999999999999999999973110  0                            0001123333333333444557


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCChhcH------HHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCC
Q 028292           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESE  134 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  134 (211)
                      +++|+|+||+.+|.......+..+|++|+|+|+......      ..... ......    ..++| +|+++||+|+.+.
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~e-h~~~~~----~~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAF----TLGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHH----HTTCCEEEEEEECGGGGTT
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHH-HHHHHH----HcCCCeEEEEEECCCCCCC
Confidence            899999999999999998999999999999999864210      01122 122222    24454 7889999998664


Q ss_pred             cccCH----HHHHHHHHHhC-----CcEEEeccCCCCCHHH
Q 028292          135 RVVSK----KEGIDFAREYG-----CLFLECSAKTRVNVEQ  166 (211)
Q Consensus       135 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  166 (211)
                      .....    ++...+....+     ++++++|+.+|.|+-+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            43222    23334444443     4689999999998744

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.70  E-value=5.2e-17  Score=118.46  Aligned_cols=155  Identities=20%  Similarity=0.135  Sum_probs=83.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCcceeeeEEEEEEECCe
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGK   59 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   59 (211)
                      ....++|+++|+.++|||||+.+|+...-                              .......+.+.......+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            44678999999999999999999953110                              001111122222222222333


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcH---H---HHHHHHHHHHHhhcCCCCC-cEEEEEeCCCCC
Q 028292           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF---T---NLADIWAKEIDLYSTNQDC-IKLLVGNKVDKE  132 (211)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~---~---~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~  132 (211)
                      ...+.++|+||+..|..........+|++++|+|+.....-   .   ...+ ......    ..++ ++++++||+|+.
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~----~~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLAR----TQGINHLVVVINKMDEP  175 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHH----HTTCSSEEEEEECTTST
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHH----HcCCCeEEEEEEcCCCC
Confidence            45789999999999999888889999999999999874211   0   1112 122222    2344 477889999986


Q ss_pred             CCc--ccCHHH----HHHHHHHh-------CCcEEEeccCCCCCHHHHHH
Q 028292          133 SER--VVSKKE----GIDFAREY-------GCLFLECSAKTRVNVEQCFE  169 (211)
Q Consensus       133 ~~~--~~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~  169 (211)
                      ...  +...++    ...+....       .++++++||++|+||.++++
T Consensus       176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            432  111122    22222222       25799999999999976543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=1.9e-17  Score=119.59  Aligned_cols=150  Identities=20%  Similarity=0.186  Sum_probs=92.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCcceeeeEEEEEEECCeEE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKKM   61 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~   61 (211)
                      ..+||+++|+.++|||||+.+|+...-                              .......|.+.......++....
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            358999999999999999999963110                              00111223333333334444556


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCChhcHH------HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT------NLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER  135 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  135 (211)
                      .++|+||||+..|.......+..+|++|+|+|+.+...-.      ...+ .+.....   ....++|++.||+|+....
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e-~l~~~~~---~~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE-HIILAKT---MGLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH-HHHHHHH---TTCTTCEEEEECGGGSSST
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHH-HHHHHHH---hCCCceEEEEEcccCCCcc
Confidence            7999999999999999999999999999999999852111      1111 1111221   2345688899999985422


Q ss_pred             --ccCH----HHHHHHHHHhC-----CcEEEeccCCCCCHH
Q 028292          136 --VVSK----KEGIDFAREYG-----CLFLECSAKTRVNVE  165 (211)
Q Consensus       136 --~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~  165 (211)
                        ....    .+...+...++     ++++++||..|.|+.
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence              1111    22333333332     468999999999884

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.67  E-value=1.6e-16  Score=116.70  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=78.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC--CC-----CCC----------cceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EE-----LSP----------TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~--~~-----~~~----------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (211)
                      -||+|+|+.++|||||+.+|+...-  ..     ...          ..+.+.......+......++++||||+.+|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            3799999999999999999964211  00     000          111222222223333445689999999999999


Q ss_pred             cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      .....+..+|++|+|+|+.+.-....... |. ...    ..++|.++++||+|.
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~~~-~~-~~~----~~~~p~~i~iNk~D~  131 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTERA-WT-VAE----RLGLPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHHH-HH-HHH----HTTCCEEEEEECGGG
T ss_pred             hhhhhhcccCceEEEeeccCCccchhHHH-HH-hhh----hcccccccccccccc
Confidence            88889999999999999998755544333 33 333    467999999999996

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.65  E-value=8.1e-16  Score=113.06  Aligned_cols=127  Identities=14%  Similarity=0.076  Sum_probs=78.1

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeEEEEEEEeCCCcccccc-------ccc-
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKKMKLAIWDTAGQERFRT-------LTS-   79 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~-   79 (211)
                      ....++|+|+|.+|+|||||+|.+++.......+..+++.  ........+  ..+.|+||||......       ... 
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            3567999999999999999999999987644444444433  333444454  4688999999432211       111 


Q ss_pred             -ccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292           80 -SYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK  139 (211)
Q Consensus        80 -~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  139 (211)
                       ......|++++|++.+... +-..... +......+....-.++++|+||+|.........
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~-l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLV-AKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHH-HHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHH-HHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence             1124568889998887542 2211111 222222222233467899999999876555443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.7e-15  Score=116.82  Aligned_cols=158  Identities=18%  Similarity=0.221  Sum_probs=93.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCC-CC---CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----cccccc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-----LTSSYY   82 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~   82 (211)
                      .+++|+|+|.+|||||||+|+|++.... ..   ....+++.....+... ....+.||||||-.....     .....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            5799999999999999999999986541 11   1122233333333322 222478999999543221     122335


Q ss_pred             cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-------CCcccCHHHHH--------HHHH
Q 028292           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVSKKEGI--------DFAR  147 (211)
Q Consensus        83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~~--------~~~~  147 (211)
                      ...|.++++.|..-.+  .+. . +...+.    ..++|+++|.||+|..       .......+...        ....
T Consensus       134 ~~~d~~l~~~~~~~~~--~d~-~-l~~~l~----~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK--NDI-D-IAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             GGCSEEEEEESSCCCH--HHH-H-HHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCCCCH--HHH-H-HHHHHH----HcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            6788888887754322  221 1 344444    3579999999999952       11112222211        1222


Q ss_pred             HhCC---cEEEeccCCC--CCHHHHHHHHHHHHHcC
Q 028292          148 EYGC---LFLECSAKTR--VNVEQCFEELVLKILDT  178 (211)
Q Consensus       148 ~~~~---~~~~~Sa~~~--~~v~~~~~~i~~~~~~~  178 (211)
                      ..++   ++|.+|..+.  .++.++.+.+.+.+.+.
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            3333   5788887653  48999999988877553

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.1e-14  Score=108.67  Aligned_cols=114  Identities=19%  Similarity=0.246  Sum_probs=79.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCC--C---------------CCCCCcceeeeEEEEEEE--------------CCeE
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDT--F---------------EELSPTIGVDFKIKHVAL--------------GGKK   60 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~--~---------------~~~~~~~~~~~~~~~~~~--------------~~~~   60 (211)
                      +.-||+|+|+.++|||||+.+|+...  .               .+.............+..              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            34469999999999999999997311  0               011111111111112211              3456


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  131 (211)
                      +.++|+||||+.+|.......++-+|++|+|+|+.+.-..+.... |....     ..++|+++++||+|.
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~-~~~a~-----~~~~p~i~viNKiDr  160 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHH-HHHHH-----HcCCCeEEEEECccc
Confidence            789999999999999999888999999999999999866554433 33332     477999999999996

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.47  E-value=1.7e-14  Score=105.03  Aligned_cols=113  Identities=17%  Similarity=-0.009  Sum_probs=66.1

Q ss_pred             EEEEEeCCCccccccccccc-----ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292           62 KLAIWDTAGQERFRTLTSSY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV  136 (211)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  136 (211)
                      .+.++|+||+..+.......     ....+.+++++|+.....-.......+....... ....|.++|+||+|+.....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ivvinK~D~~~~~~  174 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKVDLLSEEE  174 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCGGGCCHHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH-HhCCCceeeeeccccccHHH
Confidence            47888999986653222111     1245688999998643332222211111111111 24688999999999865332


Q ss_pred             cCHHH--------------------------HHHHHHH--hCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292          137 VSKKE--------------------------GIDFARE--YGCLFLECSAKTRVNVEQCFEELVLKI  175 (211)
Q Consensus       137 ~~~~~--------------------------~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~  175 (211)
                      .....                          ......+  ..++++++||++|+|+++++..|.+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            11100                          0001111  246899999999999999999988764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.36  E-value=1.6e-12  Score=97.81  Aligned_cols=153  Identities=12%  Similarity=0.102  Sum_probs=89.1

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCcce----------------eeeEEEEEEEC------
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSPTIG----------------VDFKIKHVALG------   57 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~~~~----------------~~~~~~~~~~~------   57 (211)
                      .+.++|.|.|+||+|||||+++|.....           +...+..+                ...........      
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            4679999999999999999999985210           11111110                01111111000      


Q ss_pred             ------------CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEE
Q 028292           58 ------------GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV  125 (211)
Q Consensus        58 ------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv  125 (211)
                                  -.++.+.|++|.|.-....   ....-+|.+++|......+..+..+.-.+          .++=++|
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~gil----------E~aDi~v  195 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF----------ELADMIA  195 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH----------HHCSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhhHh----------hhhheee
Confidence                        0113567778877432222   22345899999999988754433222111          1334899


Q ss_pred             EeCCCCCCCcccCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          126 GNKVDKESERVVSKKEGIDFARE----------YGCLFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       126 ~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      +||+|+.+...........+...          +..+++.+||++++|+++++++|.+...
T Consensus       196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            99999866554433332222222          3457999999999999999999977654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2.8e-13  Score=102.14  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=50.8

Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--HHHHHHHH-------HhCC
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK--KEGIDFAR-------EYGC  151 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~-------~~~~  151 (211)
                      +...+|.+++|.++...+..+..+..++.          ++=++|+||+|+........  .+......       .+..
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e----------~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p  233 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLME----------VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQP  233 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHH----------HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCC
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhc----------cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcc
Confidence            34568999999988766544433332221          22378899999865433211  11111111       2335


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHH
Q 028292          152 LFLECSAKTRVNVEQCFEELVLKIL  176 (211)
Q Consensus       152 ~~~~~Sa~~~~~v~~~~~~i~~~~~  176 (211)
                      +++.+||.+|+|++++++.|.+...
T Consensus       234 ~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         234 RVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             eeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            7999999999999999999987653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.34  E-value=7.7e-12  Score=92.60  Aligned_cols=82  Identities=22%  Similarity=0.200  Sum_probs=51.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccc----
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQER----   73 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~----   73 (211)
                      ++|.++|.|+||||||++++++... ...+|....+...-.+.+.+.               ...+.++|+||.-.    
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            7999999999999999999998765 222222222222222333221               13588999999422    


Q ss_pred             ---ccccccccccCccEEEEEEECC
Q 028292           74 ---FRTLTSSYYRGAQGIIMVYDVT   95 (211)
Q Consensus        74 ---~~~~~~~~~~~~d~~ilv~d~~   95 (211)
                         .....-..++++|+++.|+|+.
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCccHHHHHHHHhccceEEEeecc
Confidence               1222334568899999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=1.6e-11  Score=91.66  Aligned_cols=85  Identities=21%  Similarity=0.192  Sum_probs=56.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGK---------------KMKLAIWDTAGQER-   73 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~i~D~~g~~~-   73 (211)
                      ..++|.++|.|+||||||++++++.........+++|  ...-.+.+.+.               ...+.+.|.||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            4589999999999999999999987543333333332  22333333321               24688999998332 


Q ss_pred             ------ccccccccccCccEEEEEEECCC
Q 028292           74 ------FRTLTSSYYRGAQGIIMVYDVTR   96 (211)
Q Consensus        74 ------~~~~~~~~~~~~d~~ilv~d~~~   96 (211)
                            ........++++|+++.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  12234445789999999999865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=1.1e-10  Score=87.88  Aligned_cols=82  Identities=22%  Similarity=0.196  Sum_probs=45.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEE--------EEEE----------------ECCeEEEEEEEeCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--------KHVA----------------LGGKKMKLAIWDTA   69 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--------~~~~----------------~~~~~~~~~i~D~~   69 (211)
                      ++|.++|.||||||||+|+|++... .....+++|...        ....                ......+++++|+|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~-~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCC-chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            5899999999999999999998764 222323222211        1100                01234679999999


Q ss_pred             Cccc-------ccccccccccCccEEEEEEECCC
Q 028292           70 GQER-------FRTLTSSYYRGAQGIIMVYDVTR   96 (211)
Q Consensus        70 g~~~-------~~~~~~~~~~~~d~~ilv~d~~~   96 (211)
                      |.-.       .....-..++.+|++++|+|+.+
T Consensus        80 Gli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             ---------------CCCSSTTCSEEEEEEETTC
T ss_pred             CcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            9422       12223344678999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=1.5e-09  Score=80.86  Aligned_cols=26  Identities=31%  Similarity=0.604  Sum_probs=23.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      ..+|+|+|..++|||||||+|++.++
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~   51 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCc
Confidence            45899999999999999999999876

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=2.7e-10  Score=83.83  Aligned_cols=59  Identities=27%  Similarity=0.392  Sum_probs=39.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (211)
                      ....++|+|+|.||||||||+|+|.+.+...+.+.+|.|.....+..+.   .+.++||||-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            4467999999999999999999999988888889999887766665544   4789999994

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.94  E-value=1.1e-09  Score=81.79  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=23.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      ..+|+|+|..++|||||||+|++.++
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999999775

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=1.4e-07  Score=66.40  Aligned_cols=85  Identities=21%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--hCCcEEEecc
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE--YGCLFLECSA  158 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa  158 (211)
                      .+.+.|.+++|+.+..|+.-....+.|+-...    ..++|.+||+||+|+.+...  .+....+...  .+.+++.+|+
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~----~~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAE----KNELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHH----HTTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HcCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEecc
Confidence            45788999999999887533333333444443    47899999999999955332  1222233332  3468899999


Q ss_pred             CCCCCHHHHHHHH
Q 028292          159 KTRVNVEQCFEEL  171 (211)
Q Consensus       159 ~~~~~v~~~~~~i  171 (211)
                      +++.|++++..++
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999999987765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=8e-08  Score=67.72  Aligned_cols=58  Identities=24%  Similarity=0.216  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC---CCCCCc----ceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF---EELSPT----IGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (211)
                      ..+++|++|||||||||+|.....   .+....    ..++....-+.+.+..   .++||||-..+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            568999999999999999987543   121111    1234444445554433   567999965443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.42  E-value=3.4e-07  Score=63.97  Aligned_cols=147  Identities=16%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC----------------------CcceeeeEEEEEEEC------
Q 028292            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS----------------------PTIGVDFKIKHVALG------   57 (211)
Q Consensus         6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----------------------~~~~~~~~~~~~~~~------   57 (211)
                      ...+...+.-|+++|++||||||.+-+|...-.....                      ...+..+......-+      
T Consensus         5 ~~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~   84 (211)
T d1j8yf2           5 KVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAK   84 (211)
T ss_dssp             CCSCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred             ccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHH
Confidence            3445556677888999999999998888642110000                      000111110000000      


Q ss_pred             -------CeEEEEEEEeCCCcccccc--c----cccc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE
Q 028292           58 -------GKKMKLAIWDTAGQERFRT--L----TSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK  122 (211)
Q Consensus        58 -------~~~~~~~i~D~~g~~~~~~--~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~  122 (211)
                             ...+.+.|+||+|...+..  .    ...+  .-..+-.++|++++....-...   .......    .++ -
T Consensus        85 ~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~---~~~~~~~----~~~-~  156 (211)
T d1j8yf2          85 RGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL---ASKFNQA----SKI-G  156 (211)
T ss_dssp             HHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHH----CTT-E
T ss_pred             HHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHH---Hhhhhcc----cCc-c
Confidence                   0124689999999644331  1    1111  1234678899998776432221   2222221    122 2


Q ss_pred             EEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292          123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus       123 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      -+|++|.|....    .=.+.......++|+..++  +|++|++
T Consensus       157 ~lI~TKlDet~~----~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         157 TIIITKMDGTAK----GGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             EEEEECTTSCSC----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             eEEEecccCCCc----ccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            377999996322    3455667788899988787  5776654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.41  E-value=1.2e-06  Score=59.37  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +||+++|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999873

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=1.9e-07  Score=65.45  Aligned_cols=142  Identities=16%  Similarity=0.216  Sum_probs=76.0

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC----------------------cceeeeEEEEEEEC----------
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP----------------------TIGVDFKIKHVALG----------   57 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~----------   57 (211)
                      ...+.-|+++|++||||||.+-+|...-......                      ..+..+....-.-+          
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~   87 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA   87 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHH
Confidence            3466788999999999999988886421111000                      00111110000000          


Q ss_pred             ---CeEEEEEEEeCCCccccccc----cccc---cc-----CccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCc
Q 028292           58 ---GKKMKLAIWDTAGQERFRTL----TSSY---YR-----GAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCI  121 (211)
Q Consensus        58 ---~~~~~~~i~D~~g~~~~~~~----~~~~---~~-----~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p  121 (211)
                         ...+.+.|+||+|....+..    +..+   ..     ..+-.++|+|++... ....+.. +...+.        +
T Consensus        88 ~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~~--------~  158 (213)
T d1vmaa2          88 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKI-FKEAVN--------V  158 (213)
T ss_dssp             HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHH-HHHHSC--------C
T ss_pred             HHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhh-hccccC--------C
Confidence               01235799999995443321    1111   11     135688999997653 2222222 222221        2


Q ss_pred             EEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292          122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus       122 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      -=+|++|.|....-    =.+.......++|+..++  +|+++++
T Consensus       159 ~~lI~TKlDe~~~~----G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         159 TGIILTKLDGTAKG----GITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             CEEEEECGGGCSCT----THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             ceEEEecccCCCcc----cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            34789999963322    244566778899988777  5666654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.39  E-value=3.1e-07  Score=64.05  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=52.0

Q ss_pred             EEEEEEeCCCccccccc----cccc---c-----cCccEEEEEEECCChhc-HHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 028292           61 MKLAIWDTAGQERFRTL----TSSY---Y-----RGAQGIIMVYDVTRRDT-FTNLADIWAKEIDLYSTNQDCIKLLVGN  127 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~----~~~~---~-----~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (211)
                      +.+.|+||+|....+..    +..+   .     ...+-.++|+|++.... ...+.. +...+..        --+|++
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~~~--------~~lI~T  159 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK-FHEAVGL--------TGVIVT  159 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH-HHHHHCC--------SEEEEE
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHH-hhhccCC--------ceEEEe
Confidence            46899999995443321    1111   1     23467889999987643 222222 3333322        137899


Q ss_pred             CCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292          128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC  167 (211)
Q Consensus       128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  167 (211)
                      |.|......    .+.......++|+..++  +|++.+++
T Consensus       160 KlDet~~~G----~~l~~~~~~~~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         160 KLDGTAKGG----VLIPIVRTLKVPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             CTTSSCCCT----THHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred             ccCCCCCcc----HHHHHHHHHCCCEEEEe--CCCChHhC
Confidence            999643322    23456777889887776  35554443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=2.7e-07  Score=67.49  Aligned_cols=90  Identities=12%  Similarity=0.045  Sum_probs=63.9

Q ss_pred             ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus        78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      ....+..+|++|.|.|+.+|.+..+-      .+..+.  .++|+++|+||+|+.+...  .+...++....+..++.+|
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~------~l~~~~--~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP------MIEDIL--KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHC--SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH------HHHHHH--cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceee
Confidence            34468899999999999998665321      112222  3789999999999954431  2223344455578899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHc
Q 028292          158 AKTRVNVEQCFEELVLKILD  177 (211)
Q Consensus       158 a~~~~~v~~~~~~i~~~~~~  177 (211)
                      +.++.+...+...+.+.+.+
T Consensus        79 a~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhhh
Confidence            99999999888888776654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=8.5e-07  Score=62.73  Aligned_cols=23  Identities=39%  Similarity=0.491  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      =.+|-|.-|||||||+++++...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            46788999999999999998753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=1.7e-07  Score=66.29  Aligned_cols=57  Identities=28%  Similarity=0.422  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC---CCCCCc--ce--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF---EELSPT--IG--VDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~---~~~~~~--~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (211)
                      ..+++|++|||||||||+|.....   .+....  .|  ++....-+..++ +   .++||||-..+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g---~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-G---LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-E---EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-C---EEEECCcccccc
Confidence            457889999999999999997643   111111  11  222222234444 2   367999965554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.1e-06  Score=61.26  Aligned_cols=91  Identities=12%  Similarity=0.194  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCccccccc-------cccccc-----CccEEEEEEECCChhc-HHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 028292           61 MKLAIWDTAGQERFRTL-------TSSYYR-----GAQGIIMVYDVTRRDT-FTNLADIWAKEIDLYSTNQDCIKLLVGN  127 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~-------~~~~~~-----~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~ivv~n  127 (211)
                      +.+.|+||+|....+..       +...++     ..+-.++|.|++.... ...+.. +...+.        +--+|++
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~~--------~~~lIlT  162 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL-FHEAVG--------LTGITLT  162 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHH-HHHHSC--------CCEEEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhh-hhhccC--------CceEEEe
Confidence            35789999994332211       111121     2357889999877532 222222 222221        2347899


Q ss_pred             CCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292          128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ  166 (211)
Q Consensus       128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  166 (211)
                      |.|....-    =.+.......++|+..++  +|++|++
T Consensus       163 KlDe~~~~----G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         163 KLDGTAKG----GVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             CCTTCTTT----THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             ecCCCCCc----cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            99963332    234566778899988887  6766654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=2.5e-07  Score=65.36  Aligned_cols=87  Identities=13%  Similarity=0.117  Sum_probs=59.9

Q ss_pred             cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHhCCcEEEecc
Q 028292           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAREYGCLFLECSA  158 (211)
Q Consensus        81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa  158 (211)
                      .+.+.|.+++|+++.+|+.-....+.++-...    ..+++.+||+||+|+.+.....  .+...+.....+.+++.+|+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            35788999999999887533333332444443    5789999999999996553321  12223344567899999999


Q ss_pred             CCCCCHHHHHHHH
Q 028292          159 KTRVNVEQCFEEL  171 (211)
Q Consensus       159 ~~~~~v~~~~~~i  171 (211)
                      +++.|++++..++
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999988876544

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.15  E-value=2e-06  Score=59.93  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=49.7

Q ss_pred             EEEEEEeCCCccccccc----cccc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE  134 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  134 (211)
                      ..+.|+||+|....+..    +..+  ..+.+-.++|.|++....-......+...+..        -=+|++|.|....
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~--------~~~I~TKlDe~~~  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV--------TGLVLTKLDGDAR  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCC--------CEEEEECGGGCSS
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCC--------CeeEEeecCcccc
Confidence            35789999995444321    1111  23557889999998774332222212222221        2378999995322


Q ss_pred             cccCHHHHHHHHHHhCCcEEEec
Q 028292          135 RVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                          .-.+.......++|+..++
T Consensus       165 ----~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         165 ----GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             ----CHHHHHHHHHHCCCEEEEC
T ss_pred             ----chHHHHHHHHHCCCEEEEe
Confidence                3345567778889887775

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=7.1e-06  Score=55.66  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      -+|+|.|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999985

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.70  E-value=1e-05  Score=54.37  Aligned_cols=25  Identities=20%  Similarity=0.403  Sum_probs=22.6

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .+.++|+|.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4568999999999999999999975

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=1.5e-05  Score=53.28  Aligned_cols=22  Identities=36%  Similarity=0.415  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -|+|+|.+|||||||+++|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999999863

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.61  E-value=1.7e-05  Score=54.40  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..+.++|+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            357789999999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.61  E-value=1.3e-05  Score=53.69  Aligned_cols=23  Identities=48%  Similarity=0.645  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..+|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999964

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.59  E-value=1.3e-05  Score=54.78  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+++|+|+|++||||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.56  E-value=2e-05  Score=53.41  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.50  E-value=2.7e-05  Score=51.01  Aligned_cols=21  Identities=43%  Similarity=0.596  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |++.|++|||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999998753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=2.8e-05  Score=52.72  Aligned_cols=23  Identities=30%  Similarity=0.653  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.48  E-value=2.9e-05  Score=52.70  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.47  E-value=3.2e-05  Score=52.86  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +.++|+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999974

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.47  E-value=4.1e-05  Score=52.42  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=21.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +++..|+|+|+|||||||+.++|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4557889999999999999999975

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=3.3e-05  Score=52.33  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999975

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.7e-05  Score=52.01  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.39  E-value=4.5e-05  Score=50.85  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |.|+|.+|||||||+++|...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            359999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.35  E-value=5.3e-05  Score=50.50  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |++.|++||||||+.+.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            888999999999999999853

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00015  Score=52.56  Aligned_cols=60  Identities=20%  Similarity=0.111  Sum_probs=40.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC-CC-----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EE-----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (211)
                      +..=|.|+|+.++|||+|+|.|.+... -.     ...|.|.-.....+ ..+....+.++||.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            456788999999999999999998764 11     22344433332222 13344568899999954

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=6.2e-05  Score=50.64  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +|++.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=8.6e-05  Score=50.73  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=7.4e-05  Score=49.23  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00013  Score=49.02  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..+.=|+++|.|||||||+.+++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456788999999999999999964

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=3.9e-05  Score=52.00  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+|+|++|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            888999999999999999854

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=7.5e-05  Score=49.75  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=9.7e-05  Score=50.26  Aligned_cols=21  Identities=43%  Similarity=0.705  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+|+|++||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.17  E-value=0.0001  Score=50.80  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|+.|+|||||++.+++..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            46799999999999999998744

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.15  E-value=0.0001  Score=48.95  Aligned_cols=21  Identities=38%  Similarity=0.581  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.00015  Score=49.93  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .=|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999985

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00014  Score=51.54  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      +|+|+|++|+|||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999999743

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.09  E-value=0.00014  Score=48.92  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      |+|.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=51.06  Aligned_cols=23  Identities=39%  Similarity=0.535  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998743

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.09  E-value=0.00016  Score=51.84  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+.-|++.|+||+|||||++.+.+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999999764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.00014  Score=49.13  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+++|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.08  E-value=0.0002  Score=47.84  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .-+-|.+.|.+||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00015  Score=48.25  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      =|+|+|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3667899999999999999753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.06  E-value=0.00015  Score=50.94  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .+.++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999888743

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.05  E-value=0.00016  Score=48.85  Aligned_cols=22  Identities=41%  Similarity=0.564  Sum_probs=18.0

Q ss_pred             EEEE-EEcCCCCcHHHHHHHHhh
Q 028292           14 FKLL-LIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~-v~G~~~~GKstli~~l~~   35 (211)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3555 569999999999999963

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.05  E-value=0.00016  Score=50.95  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999999854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00017  Score=49.18  Aligned_cols=21  Identities=48%  Similarity=0.695  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+|+|++|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.03  E-value=0.00018  Score=50.99  Aligned_cols=23  Identities=30%  Similarity=0.327  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|+|||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68999999999999999998743

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.03  E-value=0.00018  Score=50.79  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.99  E-value=0.00021  Score=47.61  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999988753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.0002  Score=48.96  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      --|+++|+|||||||+...|..
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3588899999999999999976

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00021  Score=51.00  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999998743

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.98  E-value=0.00021  Score=51.07  Aligned_cols=22  Identities=41%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999999864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00018  Score=50.73  Aligned_cols=24  Identities=42%  Similarity=0.642  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-++++.|+||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00021  Score=51.82  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .|+|+|+.|+|||||++.+++-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58899999999999999998743

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00021  Score=49.39  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+|+|++||||+||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00026  Score=48.25  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      =+++++|++|||||++++.|...-
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            478999999999999999988643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.93  E-value=0.00022  Score=50.48  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46889999999999999999854

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.92  E-value=0.00026  Score=47.13  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      |++.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.92  E-value=0.00017  Score=50.55  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999999854

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.92  E-value=0.00025  Score=50.10  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.91  E-value=0.00025  Score=48.40  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      --|+|+|+|||||||+..+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999975

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.91  E-value=0.00034  Score=47.44  Aligned_cols=25  Identities=28%  Similarity=0.171  Sum_probs=21.9

Q ss_pred             CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        11 ~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..++-|.|-|++|||||||.++|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567799999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00024  Score=50.20  Aligned_cols=23  Identities=39%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -+.++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999998744

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.90  E-value=0.00023  Score=50.14  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++++.|+||+|||++++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            47999999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00026  Score=50.03  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999999854

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.88  E-value=0.00029  Score=47.02  Aligned_cols=20  Identities=20%  Similarity=0.507  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999964

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00019  Score=50.53  Aligned_cols=21  Identities=48%  Similarity=0.703  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -+.++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999987

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00035  Score=50.20  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      =+++++|++|||||++++.|...-.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH
Confidence            4889999999999999999876433

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.78  E-value=0.00024  Score=50.68  Aligned_cols=22  Identities=36%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +|+|+|++|+|||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            7899999999999999988863

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.75  E-value=0.00034  Score=51.76  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -+|+|.|.+|+|||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.75  E-value=0.00038  Score=49.72  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      +.++|+.|+|||||++.+.+..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999999854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00023  Score=48.33  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +..-|.+.|.+||||||+.+.|...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456889999999999999999653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.71  E-value=0.00048  Score=48.21  Aligned_cols=23  Identities=39%  Similarity=0.637  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.71  E-value=0.00022  Score=50.36  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999999854

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.71  E-value=0.00046  Score=47.00  Aligned_cols=28  Identities=36%  Similarity=0.463  Sum_probs=24.1

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +..+++-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            4457789999999999999999999753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.70  E-value=0.00067  Score=48.14  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ....|++.|+||+|||+|++.+.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3457999999999999999999763

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.69  E-value=0.00045  Score=49.37  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998743

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00055  Score=48.50  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .-.+++.|++|+||||+++.+....
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3478999999999999999998753

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.64  E-value=0.00053  Score=47.62  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +.+.|.+-|++||||||+...|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357889999999999999999975

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00066  Score=46.87  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ++-|+|.|.+|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.60  E-value=0.00062  Score=48.51  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ..-.++|.|++|+|||++++.+...-
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.00061  Score=50.05  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-.|+++||||||||.|.+.+...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            346899999999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.0013  Score=43.11  Aligned_cols=27  Identities=30%  Similarity=0.306  Sum_probs=22.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      +..-|++-|+-|+|||||++.+...--
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            345688899999999999999987543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.54  E-value=0.00064  Score=48.74  Aligned_cols=22  Identities=32%  Similarity=0.300  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+++.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3455699999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.00085  Score=47.61  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35899999999999999999963

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.43  E-value=0.00073  Score=52.12  Aligned_cols=21  Identities=33%  Similarity=0.713  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      ||+++||+|||||.|.++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999964

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.00084  Score=46.74  Aligned_cols=23  Identities=22%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++++.|++|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            36899999999999999988754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.40  E-value=0.00085  Score=47.85  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578889999999999999875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00087  Score=46.88  Aligned_cols=22  Identities=32%  Similarity=0.732  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999999864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.32  E-value=0.0016  Score=44.03  Aligned_cols=25  Identities=28%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4688999999999999999988653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.001  Score=46.33  Aligned_cols=22  Identities=27%  Similarity=0.684  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ++++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            6899999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.00083  Score=47.47  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0012  Score=47.14  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      +-.|++.|+||+|||+|++.+....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            3469999999999999999998743

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0012  Score=47.06  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +-.|++.|+||+|||++++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            345899999999999999999863

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0013  Score=45.36  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      =|+|.|+|||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467779999999999999975

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.002  Score=47.14  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=23.4

Q ss_pred             cccCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus         8 ~~~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .....++-|+|.|.+|||||||.+.|..
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4456789999999999999999888864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.11  E-value=0.034  Score=39.30  Aligned_cols=88  Identities=17%  Similarity=0.136  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCcccccc-cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCcccC
Q 028292           61 MKLAIWDTAGQERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVS  138 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~-~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~  138 (211)
                      +.+.++|+|+.-.... .......-+|.++++.+. +..++..... +...+.......+.++ -++.|+.+....    
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~-~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANN-ISKGIQKYAKSGGVRLGGIICNSRKVANE----  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHH-HHHHHHHHBTTBBCEEEEEEEECCSSSCC----
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHH-HHHHHHhhccccceeccceEEeeecCCCc----
Confidence            4578889986432221 122223456877777766 4556655555 4555555543444443 467899886443    


Q ss_pred             HHHHHHHHHHhCCcEE
Q 028292          139 KKEGIDFAREYGCLFL  154 (211)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (211)
                      .+...++....+.+++
T Consensus       190 ~~~~~~~~~~~~~~~~  205 (269)
T d1cp2a_         190 YELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHHTCCEE
T ss_pred             cchhhhhHhhcCCeEE
Confidence            2344556666676554

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.05  E-value=0.0023  Score=44.05  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=22.3

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..+.+-|.+.|.+|||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999974

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0016  Score=46.63  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      .-.|++.|++|+|||+|++.+.+.-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3469999999999999999998644

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.01  E-value=0.002  Score=44.00  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998874

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0013  Score=49.79  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=19.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .=+++++|++|||||++++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34679999999999999976654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.83  E-value=0.0012  Score=48.96  Aligned_cols=21  Identities=38%  Similarity=0.681  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      +|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            799999999999999999864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0044  Score=44.66  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=21.9

Q ss_pred             ccCeeEEEEEEcCCCCcHHHHHHHHh
Q 028292            9 EFDYLFKLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus         9 ~~~~~~~i~v~G~~~~GKstli~~l~   34 (211)
                      ....++=|.|.|.+|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34567899999999999999987764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.55  E-value=0.0038  Score=43.09  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      +.+.|++|+|||.|++++.+.-
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0039  Score=42.70  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999999874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.38  E-value=0.0039  Score=46.69  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..-+++++|++|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            445799999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.37  E-value=0.0046  Score=44.42  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      ..-|+|.|+.|+|||||+..+++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            345789999999999999998764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.35  E-value=0.0056  Score=45.17  Aligned_cols=27  Identities=30%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        10 ~~~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +...++|+|=|.-|+||||+++.|...
T Consensus         3 ~~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           3 MVTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CCceEEEEEECCccCCHHHHHHHHHHH
Confidence            346799999999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.32  E-value=0.0048  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .+++.|+||+|||+|...+.+.
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999863

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.00099  Score=45.18  Aligned_cols=19  Identities=42%  Similarity=0.695  Sum_probs=16.5

Q ss_pred             EEEcCCCCcHHHHHHHHhh
Q 028292           17 LLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        17 ~v~G~~~~GKstli~~l~~   35 (211)
                      +|+|+.|+|||||+.++..
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4569999999999999963

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0055  Score=42.09  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998888764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.15  E-value=0.0079  Score=40.00  Aligned_cols=24  Identities=42%  Similarity=0.621  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      =|++.|++|+||||+.-.|....+
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            488999999999999999887543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.08  E-value=0.0067  Score=44.69  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=23.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      ..++|+|=|.-|+||||+++.|...-
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999998643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.06  E-value=0.0034  Score=47.72  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      |+|.|++|+||||.+..++..-
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            8999999999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0067  Score=41.26  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++|.|++|+|||+|...+....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36788999999999999987644

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0045  Score=43.14  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .|+|-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5888899999999999988763

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.04  E-value=0.0082  Score=39.94  Aligned_cols=25  Identities=36%  Similarity=0.578  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      .=|++.|++|+|||||.-.|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3478999999999999999986543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.011  Score=40.46  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      +-|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            457899999999999999886543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.96  E-value=0.0078  Score=44.08  Aligned_cols=21  Identities=19%  Similarity=0.476  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      +++.|+||+|||.|.+.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            444699999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.96  E-value=0.0044  Score=44.93  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=17.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .++ +++|+.|+|||+++.++..
T Consensus        25 ~ln-vlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVT-AIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEE-EEECCTTTCSTHHHHHHHH
T ss_pred             CeE-EEECCCCCcHHHHHHHHHH
Confidence            355 4669999999999998843

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.94  E-value=0.0091  Score=43.89  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..++|+|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            567899999999999999999974

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.0081  Score=43.99  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .++++|++|||||.|.+.|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            688999999999999999975

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.008  Score=41.75  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++|.|+||+|||+|...+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36788999999999999987543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.84  E-value=0.0096  Score=40.58  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      +-|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999998864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.67  E-value=0.012  Score=38.84  Aligned_cols=25  Identities=36%  Similarity=0.585  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~~~   38 (211)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999988887653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.62  E-value=0.0095  Score=41.63  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++|.|+||+|||+|.-.+...-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36788999999999999887544

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.59  E-value=0.0047  Score=44.50  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      =|.|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.011  Score=41.16  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      --|+|=|..||||||+++.|...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            35788899999999999999753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.46  E-value=0.011  Score=41.07  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++|.|+||+|||+|...+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4678899999999999999865

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.012  Score=40.15  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -+++.|++|+||||+++.+...
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            3899999999999999988753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.012  Score=41.14  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378889999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.27  E-value=0.01  Score=40.20  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -.+++.|++++|||+|+..+..-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            46889999999999999998764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.012  Score=44.45  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=18.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~   34 (211)
                      ..+++ ++|+.|+|||+++.++.
T Consensus        25 ~~l~~-i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTS-IIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEE-EECSTTSSHHHHHHHHH
T ss_pred             CCEEE-EECCCCCCHHHHHHHHH
Confidence            44655 66999999999999984

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.02  E-value=0.015  Score=40.28  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      -++|.|++|+|||+|...+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3678899999999999999754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.014  Score=44.45  Aligned_cols=24  Identities=38%  Similarity=0.490  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        13 ~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .-+++|+|.+|+|||+++..++..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            457999999999999999887643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.89  E-value=0.016  Score=39.70  Aligned_cols=20  Identities=25%  Similarity=0.253  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      |++-|.-||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78889999999999998864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.02  Score=39.88  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      -++|.|++|+|||+|...+....
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46788999999999999998643

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.53  E-value=0.022  Score=40.51  Aligned_cols=20  Identities=30%  Similarity=0.499  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999888864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.42  E-value=0.023  Score=39.04  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -++|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467789999999999877653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.99  E-value=0.019  Score=41.19  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=14.1

Q ss_pred             EEEEcCCCCcHHHH-HHHH
Q 028292           16 LLLIGDSGVGKSTL-LLSF   33 (211)
Q Consensus        16 i~v~G~~~~GKstl-i~~l   33 (211)
                      ++|+|.+|+||||. ++++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHH
Confidence            67889999999975 4443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.95  E-value=0.023  Score=41.18  Aligned_cols=15  Identities=40%  Similarity=0.833  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 028292           16 LLLIGDSGVGKSTLL   30 (211)
Q Consensus        16 i~v~G~~~~GKstli   30 (211)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.032  Score=39.46  Aligned_cols=20  Identities=35%  Similarity=0.507  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      .+|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56889999999999987753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.75  E-value=0.035  Score=38.47  Aligned_cols=21  Identities=29%  Similarity=0.205  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q 028292           15 KLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~   35 (211)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999965

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.61  E-value=0.031  Score=40.73  Aligned_cols=22  Identities=32%  Similarity=0.688  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      .++++|++|+|||.|.+.|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5788899999999999988753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.041  Score=39.46  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~~   37 (211)
                      |++++|++|+|||+|+..+....
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999887643

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.18  E-value=0.045  Score=38.84  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~~   36 (211)
                      +.--+.+.|++++|||+|++.+...
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3456788899999999999999863

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.054  Score=40.17  Aligned_cols=19  Identities=26%  Similarity=0.483  Sum_probs=15.5

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 028292           15 KLLLIGDSGVGKSTLLLSF   33 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l   33 (211)
                      -.+|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3677799999999988654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.19  E-value=0.25  Score=32.39  Aligned_cols=104  Identities=12%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             cccCeeEEEEEEcC-CCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-----------
Q 028292            8 QEFDYLFKLLLIGD-SGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-----------   74 (211)
Q Consensus         8 ~~~~~~~~i~v~G~-~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------   74 (211)
                      ....+++||.|+|. .++|-+. +.+|..+.. ...                 ..+.+.++|.+.....           
T Consensus        19 ~~~k~~~kV~I~GA~G~Ig~~l-~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~   80 (175)
T d7mdha1          19 KSWKKLVNIAVSGAAGMISNHL-LFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDS   80 (175)
T ss_dssp             --CCCCEEEEEETTTSHHHHHH-HHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTT
T ss_pred             hccCCCcEEEEECCCcHHHHHH-HHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhccc
Confidence            34457899999997 6678654 445555443 111                 1234556666542110           


Q ss_pred             ----------cccccccccCccEEEEEEECCCh--hcHHHH----HH---HHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292           75 ----------RTLTSSYYRGAQGIIMVYDVTRR--DTFTNL----AD---IWAKEIDLYSTNQDCIKLLVGNKVD  130 (211)
Q Consensus        75 ----------~~~~~~~~~~~d~~ilv~d~~~~--~s~~~~----~~---~~~~~~~~~~~~~~~p~ivv~nK~D  130 (211)
                                .......+.++|++|++-.....  ++-.++    ..   .+.+.+..+. ..+.-+++|+|-.|
T Consensus        81 a~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a-~~~~~vlvv~NPvd  154 (175)
T d7mdha1          81 LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA-SKNVKVLVVGNPCN  154 (175)
T ss_dssp             TCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSSHH
T ss_pred             ccccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCCcEEEEecCcHH
Confidence                      01123336788999988765432  122222    11   1334444444 33555667778776

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.55  E-value=0.11  Score=31.95  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      .-+.|.+-|..|+||++|.+.|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            348899999999999999999964

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.02  E-value=0.093  Score=36.65  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q 028292           14 FKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        14 ~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ..|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999988864

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.64  E-value=0.12  Score=36.67  Aligned_cols=22  Identities=36%  Similarity=0.758  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998888754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.70  E-value=0.14  Score=36.11  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSDT   37 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (211)
                      +.+.|++++|||+|.-.+....
T Consensus        57 tei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHHH
Confidence            5678999999999998887543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.49  E-value=0.15  Score=35.32  Aligned_cols=20  Identities=30%  Similarity=0.345  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|-|+..+|||++++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            57889999999999999853

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.03  E-value=0.16  Score=34.85  Aligned_cols=20  Identities=35%  Similarity=0.438  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      ++|-|+..+|||++++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            67889999999999998853

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.18  E-value=1.3  Score=29.63  Aligned_cols=65  Identities=11%  Similarity=0.090  Sum_probs=41.6

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCC
Q 028292           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKES  133 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~  133 (211)
                      +.+.++|+++...  ......+..+|.++++...+ ..+...... ....+.    ..+.|++ +|.|+.+...
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~-~~~~~~----~~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMK-VGIVLK----KAGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHH-HHHHHH----HTTCEEEEEEEEEETSCT
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhH-HHHHHh----hhhhhhhhhhhccccccc
Confidence            4678899987542  23344466799999999874 445555444 333333    3556665 7899998643

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.85  E-value=0.61  Score=29.66  Aligned_cols=26  Identities=15%  Similarity=0.300  Sum_probs=18.4

Q ss_pred             CeeEEEEEEcC-CCCcHHHHHHHHhhCC
Q 028292           11 DYLFKLLLIGD-SGVGKSTLLLSFTSDT   37 (211)
Q Consensus        11 ~~~~~i~v~G~-~~~GKstli~~l~~~~   37 (211)
                      ++++||.|+|. .++|-+. ...|..++
T Consensus         2 ~~p~KV~IiGA~G~VG~~~-a~~l~~~~   28 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSL-LFRIAAGE   28 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHH-HHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHH-HHHHHhcc
Confidence            46789999996 7889554 55555444

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.56  E-value=0.17  Score=31.45  Aligned_cols=20  Identities=30%  Similarity=0.260  Sum_probs=16.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      .+|.+++|+|||+++-.+..
T Consensus        11 ~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46789999999998866553

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.60  E-value=0.18  Score=36.37  Aligned_cols=14  Identities=50%  Similarity=0.759  Sum_probs=12.8

Q ss_pred             EEEcCCCCcHHHHH
Q 028292           17 LLIGDSGVGKSTLL   30 (211)
Q Consensus        17 ~v~G~~~~GKstli   30 (211)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999976

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.10  E-value=0.19  Score=36.35  Aligned_cols=16  Identities=44%  Similarity=0.613  Sum_probs=13.7

Q ss_pred             EEEEcCCCCcHHHHHH
Q 028292           16 LLLIGDSGVGKSTLLL   31 (211)
Q Consensus        16 i~v~G~~~~GKstli~   31 (211)
                      -+++|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4889999999999754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.55  E-value=0.31  Score=32.57  Aligned_cols=24  Identities=13%  Similarity=0.092  Sum_probs=21.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        12 ~~~~i~v~G~~~~GKstli~~l~~   35 (211)
                      ....+++-|++|+|||++...+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998876

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.20  E-value=0.23  Score=35.94  Aligned_cols=14  Identities=50%  Similarity=0.759  Sum_probs=13.0

Q ss_pred             EEEcCCCCcHHHHH
Q 028292           17 LLIGDSGVGKSTLL   30 (211)
Q Consensus        17 ~v~G~~~~GKstli   30 (211)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999987

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.04  E-value=0.37  Score=32.17  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=17.7

Q ss_pred             EEEEEcCC-CCcHHHHHHHHhh
Q 028292           15 KLLLIGDS-GVGKSTLLLSFTS   35 (211)
Q Consensus        15 ~i~v~G~~-~~GKstli~~l~~   35 (211)
                      |+.|.|.. ||||||+.-.|..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            68899995 9999998877753

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.98  E-value=0.25  Score=35.17  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      |++++|.+|+|||+|+..+...
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998777643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.87  E-value=0.33  Score=34.24  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028292           15 KLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~   34 (211)
                      -|.+.|..|+||||+.-.+.
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHHH
Confidence            35678999999999766653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.64  E-value=0.34  Score=33.92  Aligned_cols=20  Identities=35%  Similarity=0.745  Sum_probs=14.6

Q ss_pred             EEEEE-EcCCCCcHHHHHHHH
Q 028292           14 FKLLL-IGDSGVGKSTLLLSF   33 (211)
Q Consensus        14 ~~i~v-~G~~~~GKstli~~l   33 (211)
                      .+|++ .|..||||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            34444 499999999975555

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.49  E-value=0.67  Score=29.47  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=18.2

Q ss_pred             CeeEEEEEEcC-CCCcHHHHHHHHhhC
Q 028292           11 DYLFKLLLIGD-SGVGKSTLLLSFTSD   36 (211)
Q Consensus        11 ~~~~~i~v~G~-~~~GKstli~~l~~~   36 (211)
                      ++++||.|+|. .++|.+.... |..+
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~-l~~~   26 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYS-IGNG   26 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHH-HHTT
T ss_pred             CCceEEEEECCCCHHHHHHHHH-HHHH
Confidence            35789999996 7899886654 4433

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.26  E-value=0.39  Score=33.93  Aligned_cols=118  Identities=17%  Similarity=0.202  Sum_probs=59.3

Q ss_pred             EEEEEEeCCCcccccccccc-cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCcccC
Q 028292           61 MKLAIWDTAGQERFRTLTSS-YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVS  138 (211)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~  138 (211)
                      +.+.++|+|+.......... ....++.++++... +..+...+.. ....+.......+.++ -+|.|+.+....    
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~-~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----  192 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANN-ISKGIVKYANSGSVRLGGLICNSRNTDRE----  192 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHH-HHHHHHHHHTTSCCEEEEEEEECCCCTTH----
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHH-HHHHHHhhhhcccccccceeehhhcchhh----
Confidence            45678888764322211111 12345666655444 4555555544 3444443333445554 377898874222    


Q ss_pred             HHHHHHHHHHhCCcEEEe---------ccCCCC---------CHHHHHHHHHHHHHcCCCcccC
Q 028292          139 KKEGIDFAREYGCLFLEC---------SAKTRV---------NVEQCFEELVLKILDTPSLLSE  184 (211)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~---------Sa~~~~---------~v~~~~~~i~~~~~~~~~~~~~  184 (211)
                      .+....+...++.+++.+         +...|.         ....-+..|.+.+.++.....+
T Consensus       193 ~~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~~~p  256 (289)
T d2afhe1         193 DELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLVIP  256 (289)
T ss_dssp             HHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCCBCC
T ss_pred             HHHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCCCCC
Confidence            223445556666655432         111222         2334577788888776655533

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=82.84  E-value=0.4  Score=33.77  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q 028292           16 LLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (211)
                      +.+.|++++|||+|...+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            567899999999999888764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.68  E-value=0.41  Score=33.69  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q 028292           16 LLLIGDSGVGKSTLLLSFTS   35 (211)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (211)
                      +.+.|++++|||+|.-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            56789999999999877764

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.94  E-value=0.48  Score=29.68  Aligned_cols=19  Identities=21%  Similarity=0.377  Sum_probs=14.5

Q ss_pred             EEEcCCCCcHHH-HHHHHhh
Q 028292           17 LLIGDSGVGKST-LLLSFTS   35 (211)
Q Consensus        17 ~v~G~~~~GKst-li~~l~~   35 (211)
                      +++|+=.||||| |++++-+
T Consensus         6 ~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHH
Confidence            356999999999 6666543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.80  E-value=0.35  Score=34.23  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q 028292           15 KLLLIGDSGVGKSTLLLSFTSD   36 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~~~   36 (211)
                      |+.++|.+|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6889999999999998776544

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.63  E-value=4.5  Score=25.86  Aligned_cols=55  Identities=20%  Similarity=0.322  Sum_probs=39.1

Q ss_pred             CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS  157 (211)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (211)
                      +|..+++.........+.    ....|+|+++.......    ..+++.+++...+++++.+.
T Consensus         3 sd~~~l~~~v~~~~~~l~----~AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIA----NRDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHT----TCSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHHH----cCCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            455566555444444443    68899999999887533    36778899999999987664

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.04  E-value=0.57  Score=30.82  Aligned_cols=17  Identities=24%  Similarity=0.557  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 028292           15 KLLLIGDSGVGKSTLLL   31 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~   31 (211)
                      ++++.+++|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            57888999999997433

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.03  E-value=7.2  Score=26.91  Aligned_cols=20  Identities=30%  Similarity=0.522  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 028292           15 KLLLIGDSGVGKSTLLLSFT   34 (211)
Q Consensus        15 ~i~v~G~~~~GKstli~~l~   34 (211)
                      +|+|-|..|+||||+.-.|.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46778999999999766653