Citrus Sinensis ID: 028320

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHcccEEEEccccccEEEEcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccHHHHHHHHHHHcccccEEEEEEcHcHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEccccEEEEcccccEEccccHHHHHHHHccccccHHHHHHHHHHHHHccccEccHHHHHHHccccEEEEEcccccEEEccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mpkqylpllgqpialYSFYTFSRMVEVKEIVVvcdpsysdiFEETKEKINVdlkfslpgkerqdsvysglqevdfnselvcihdsarplvlSKDVQKVLMDALRVGAAVlgvpakatikeansesfVVRTLDrktlwemqtpqvikpdlLKKGFELVnreglevtddvsivehlkhpvyitegsytnikvttpddLLIAERILNLSSESS
Flexible Loop (DISEMBL)
mpkqylpllgqPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLgvpakatikeansesfvvrtldrktlwemqtpqvikpdllkKGFELVNREglevtddvsiveHLKHpvyitegsytnikvttpdDLLIAERilnlssess
Low Complexity Region (SEG)
MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS
Disordered region (IsUnstruct)
****YLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG****DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN******
Disordered Region (DISOPRED)
MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAER**NLS****
Disordered Region (DISEMBL)
MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS
Disordered Region (DISPRO)
MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
P69834	302	2-C-methyl-D-erythritol 4	yes	no	0.971	0.675	0.823	1e-96
Q5N8G1	297	2-C-methyl-D-erythritol 4	yes	no	0.971	0.686	0.759	1e-84
Q6MEE8	230	2-C-methyl-D-erythritol 4	yes	no	0.952	0.869	0.482	2e-49
Q9Z7X5	211	2-C-methyl-D-erythritol 4	yes	no	0.909	0.905	0.394	4e-37
Q5L433	228	2-C-methyl-D-erythritol 4	yes	no	0.957	0.881	0.414	6e-36
A4J0Y3	234	2-C-methyl-D-erythritol 4	yes	no	0.957	0.858	0.397	8e-36
Q8R7S6	227	2-C-methyl-D-erythritol 4	yes	no	0.966	0.894	0.407	9e-35
A4IJG4	228	2-C-methyl-D-erythritol 4	yes	no	0.957	0.881	0.404	1e-34
A7Z0L2	232	2-C-methyl-D-erythritol 4	yes	no	0.966	0.875	0.403	3e-34
Q824I4	212	2-C-methyl-D-erythritol 4	yes	no	0.904	0.896	0.400	8e-34

>sp|P69834|ISPD_ARATH 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ISPD PE=1 SV=1

 Score =  352 bits (903), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 168/204 (82%), Positives = 189/204 (92%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL+F++PGK
Sbjct: 96  MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGK 155

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D   VGAAVLGVPAKATIKE
Sbjct: 156 ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE 215

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
            NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV  EGLEVTDDVSIVE+LKHPVY+
Sbjct: 216 VNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYV 275

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           ++GSYTNIKVTTPDDLL+AERIL+
Sbjct: 276 SQGSYTNIKVTTPDDLLLAERILS 299

Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Is essential for chloroplast development and required for pigments and gibberellins biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 0

>sp|Q5N8G1|ISPD_ORYSJ 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPD PE=2 SV=1

 Score =  312 bits (799), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 155/204 (75%), Positives = 181/204 (88%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLG PIAL+S  TF ++ EVKE+VVVCDP Y DIFE + E + + +KF+LPGK
Sbjct: 92  MPKQYLPLLGLPIALHSLKTFCQLKEVKEVVVVCDPDYKDIFEGSIENVQIPIKFALPGK 151

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVY+GLQE+D +SELVC+HDSARPLV S+DV+KVL DA+  GAAVLGVP KATIKE
Sbjct: 152 ERQDSVYNGLQEIDGDSELVCVHDSARPLVSSEDVKKVLEDAIVHGAAVLGVPVKATIKE 211

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           A+S SFVV+TLDRKTLWEMQTPQV++P LL+ GFELV R+GLEVTDDVSIVE+LKH VYI
Sbjct: 212 ADSNSFVVKTLDRKTLWEMQTPQVMRPSLLRDGFELVKRDGLEVTDDVSIVEYLKHSVYI 271

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           TEGSYTNIKVTTPDDLL+AER++N
Sbjct: 272 TEGSYTNIKVTTPDDLLLAERLMN 295

Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Is essential for chloroplast development.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

>sp|Q6MEE8|ISPD_PARUW 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=ispD PE=3 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 140/203 (68%), Gaps = 3/203 (1%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           +PKQYL +  +PIAL+SF   + M E+++++VVC+P Y  +F  T  K+N  L F+ PG 
Sbjct: 25  IPKQYLTIQEKPIALHSFEKLASMPEIEQMIVVCEPQYEQLF--TVYKLNKPLIFARPGL 82

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
            RQDS+++G++ +  N  LVCIHDSARP +    +++ + +A + GAAVLGV  KATIK 
Sbjct: 83  RRQDSLWNGIKLIAGNP-LVCIHDSARPFIEIDRIRQTVAEAEKWGAAVLGVRVKATIKI 141

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
              + F+V T +R  LWEMQTPQ+++  LL  GF +  +  L V+DDVS+VE +  PV +
Sbjct: 142 CEEKQFIVNTPNRAFLWEMQTPQIVRLKLLYDGFSVAQKNELTVSDDVSLVELIDKPVKV 201

Query: 181 TEGSYTNIKVTTPDDLLIAERIL 203
            EGSY NIK+TTP+DLLIA+ IL
Sbjct: 202 VEGSYLNIKITTPEDLLIAQSIL 224

Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

Protochlamydia amoebophila (strain UWE25) (taxid: 264201)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

>sp|Q9Z7X5|ISPD_CHLPN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Chlamydia pneumoniae GN=ispD PE=3 SV=1

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 120/203 (59%), Gaps = 12/203 (5%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           +PKQYLPL G P+ L+S    S + ++ E++VVCDPSY + F+E        + F++PG+
Sbjct: 21  IPKQYLPLNGTPLVLHSLKILSSLPQIAEVIVVCDPSYQETFQE------YPVSFAIPGE 74

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
            RQDSV+SGLQ+V +    V IHD ARP +   ++  +L  A ++GA  L  P   TIK+
Sbjct: 75  RRQDSVFSGLQQVSY--PWVIIHDGARPFIYPDEIHDLLETAEKIGATALASPIPYTIKQ 132

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
            N     VRTLDR  L  + TPQ IK ++L++G  L   + L + DD+   E +  P  +
Sbjct: 133 RNP----VRTLDRDNLAIIHTPQCIKTEILREGLALAKEKQLTLVDDIEAAEIIGKPSQL 188

Query: 181 TEGSYTNIKVTTPDDLLIAERIL 203
               +  IK++ P+DL IA+ +L
Sbjct: 189 VFNKHPQIKISYPEDLTIAQALL 211

Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

Chlamydia pneumoniae (taxid: 83558)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

>sp|Q5L433|ISPD_GEOKA 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=ispD PE=3 SV=1

 Score =  150 bits (379), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 121/205 (59%), Gaps = 4/205 (1%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-- 58
           M KQ+L L G+P+ + +   F R      IV+V +P+    FE+   +  +    +L   
Sbjct: 20  MNKQFLELGGEPLIVRTLNVFERDERCTRIVLVVNPAERSRFEQLLARFRIQKVAALTDG 79

Query: 59  GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI 118
           G+ERQ SVY+GLQ +    E+V IHD ARP V    + +++  A++ GAA+  V  K TI
Sbjct: 80  GEERQHSVYNGLQALA-GEEIVLIHDGARPFVRVHHLHELVNAAVQYGAAIPAVRVKDTI 138

Query: 119 KEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
           K+AN   FV +T+DR +LW +QTPQ  +  L+ +  E   + G   TDD S+VE +  PV
Sbjct: 139 KKANG-LFVEQTIDRSSLWAVQTPQAFRLSLIMEAHEAAKQAGYLGTDDASLVERIGKPV 197

Query: 179 YITEGSYTNIKVTTPDDLLIAERIL 203
            I EG Y NIK+TTP+DLL AE IL
Sbjct: 198 KIIEGDYRNIKLTTPEDLLFAEAIL 222

Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

Geobacillus kaustophilus (strain HTA426) (taxid: 235909)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

>sp|A4J0Y3|ISPD_DESRM 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=ispD PE=3 SV=1

 Score =  150 bits (378), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/204 (39%), Positives = 124/204 (60%), Gaps = 3/204 (1%)

Query: 3   KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGK 60
           KQYL L  +PI  ++     ++ ++  IV+V  P    + +E   K N+  K    +PG 
Sbjct: 23  KQYLKLQDRPILAHTIDALEQVPDITGIVLVVSPGEETLCQELILKGNLFNKIMAVVPGG 82

Query: 61  E-RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK 119
           + RQ SVY GL  +  ++ELV IHD ARPLV   ++  ++ +A RVGAA L VP K T+K
Sbjct: 83  DHRQTSVYHGLCSLPGDTELVVIHDGARPLVQRAEISHIIKEARRVGAAALAVPVKDTVK 142

Query: 120 EANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVY 179
             N + +V+ T +R+ LW +QTPQV   +L+ K  +    +G+  TDD ++VE L  PV 
Sbjct: 143 LVNDQGYVIATPNREKLWAVQTPQVFNYELILKAHQDAREKGVYATDDCALVEALGQPVK 202

Query: 180 ITEGSYTNIKVTTPDDLLIAERIL 203
           + +GSY NIK+TTP+D+++A+  L
Sbjct: 203 LVQGSYENIKITTPEDMVMAQAFL 226

Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

Desulfotomaculum reducens (strain MI-1) (taxid: 349161)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

>sp|Q8R7S6|ISPD_THETN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=ispD PE=3 SV=1

 Score =  146 bits (369), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 3/206 (1%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET---KEKINVDLKFSL 57
           + K YL + G+P+  YS   F  +  +KEI+VV  P  ++  +E    K   N   K   
Sbjct: 20  LNKVYLSIAGKPVLYYSIKAFDEIEWIKEIIVVTSPEETEYCQENVLEKFYWNKPFKIVK 79

Query: 58  PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT 117
            G+ERQ SVY+G+  VD + E+V IHD ARPLV  + + + +  A    AA +GVP K T
Sbjct: 80  GGEERQYSVYNGISVVDKDCEIVAIHDGARPLVTKEIIMEAIKAAYLYKAAAVGVPVKDT 139

Query: 118 IKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHP 177
           IK A+ ++F++ T DR+ LW +QTPQV + +L+ K       EG   TDD  +VE +   
Sbjct: 140 IKVADEDNFILDTPDRRYLWAIQTPQVFEKELIVKAHRKALEEGFLGTDDSVLVERMGFK 199

Query: 178 VYITEGSYTNIKVTTPDDLLIAERIL 203
           V + EG Y NIK+TTP+DL++AE  L
Sbjct: 200 VKLVEGDYKNIKITTPEDLVVAELFL 225

Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

>sp|A4IJG4|ISPD_GEOTN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispD PE=3 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 122/205 (59%), Gaps = 4/205 (1%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLP 58
           M KQ++ L G+P+ + +   F        IV+V +P+    FE+  E+  +   + F+  
Sbjct: 20  MNKQFIELGGEPLIVRTLKVFDGDERCNGIVLVVNPTERGQFEQLFERYRIRKVVAFADG 79

Query: 59  GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI 118
           G+ERQ SVY+GLQ +  + E+V IHD ARP V  + + ++   A++ GAA+  V  K TI
Sbjct: 80  GQERQHSVYNGLQALR-SGEIVLIHDGARPFVRIRHLHELADAAVQYGAAIPAVRVKDTI 138

Query: 119 KEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
           K+ +   FV +T+DR +LW +QTPQ  +  L+ +  E   + G   TDD S+VE L  PV
Sbjct: 139 KKVDG-LFVEQTIDRSSLWAVQTPQAFRLSLIMEAHEEAKKAGYLGTDDASLVERLGRPV 197

Query: 179 YITEGSYTNIKVTTPDDLLIAERIL 203
            I EG Y NIK+TTP+DLL AE IL
Sbjct: 198 KILEGDYRNIKLTTPEDLLFAEAIL 222

Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

Geobacillus thermodenitrificans (strain NG80-2) (taxid: 420246)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

>sp|A7Z0L2|ISPD_BACA2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=ispD PE=3 SV=1

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 5/208 (2%)

Query: 3   KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE--TKEKINVDLKFSLPGK 60
           K ++ L G P+ +++   F      ++I++V + S  + F +   +  I  +++    G 
Sbjct: 22  KLFISLKGAPVIIHTLRVFESHAPCQKIILVINESEREDFRQLLAQFPIQTEIELVTGGA 81

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQ SVY GL+ +D  S +V +HD ARP V  + + K++  A   GAAVL VP K TIK 
Sbjct: 82  ERQHSVYEGLKMIDKES-VVLVHDGARPFVTHQHIDKLVETAEEAGAAVLAVPVKDTIKR 140

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL-KHPVY 179
           A   S V  T DR +LW +QTPQ  +  LLK        +G   TDD S+VE L  + V 
Sbjct: 141 AEG-SRVAETFDRSSLWAVQTPQAFRLSLLKTAHMEAENKGFLGTDDASLVERLDGYQVS 199

Query: 180 ITEGSYTNIKVTTPDDLLIAERILNLSS 207
           I EGSYTNIK+TTPDDL+ AE I+   S
Sbjct: 200 IVEGSYTNIKLTTPDDLIFAEAIMKAES 227

Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

Bacillus amyloliquefaciens (strain FZB42) (taxid: 326423)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

>sp|Q824I4|ISPD_CHLCV 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Chlamydophila caviae (strain GPIC) GN=ispD PE=3 SV=2

 Score =  143 bits (361), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 115/202 (56%), Gaps = 12/202 (5%)

Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PKQYLP  G+P+ L++  T   + E+ E++VVCD SY  IFE         +KF+  GK 
Sbjct: 23  PKQYLPFQGEPLILHALKTALHIPEITEVIVVCDVSYRHIFE------GFPVKFAESGKR 76

Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 121
           RQDSV+SGLQ V  ++  V IHD  RP +   +V +++  A + GAA L      TIK+ 
Sbjct: 77  RQDSVFSGLQHV--SNPWVLIHDGVRPFIYPDEVTELIAVAQQTGAATLVSNVPYTIKQR 134

Query: 122 NSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYIT 181
           +     V+TLDR  L  + TPQ +K ++L  G E  +REG+ + DD    E L  PV + 
Sbjct: 135 HP----VKTLDRDALSIVHTPQCVKTEILSAGLEFASREGITLVDDTQAAELLDIPVSLV 190

Query: 182 EGSYTNIKVTTPDDLLIAERIL 203
              +  IK+T P+DL IA  +L
Sbjct: 191 SSKHPQIKITYPEDLTIAHALL 212

Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

Chlamydophila caviae (strain GPIC) (taxid: 227941)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
164604990	311	2-C-methyl-D-erythritol 4-phosphate cyti	1.0	0.675	0.895	1e-106
164604992	311	2-C-methyl-D-erythritol 4-phosphate cyti	1.0	0.675	0.895	1e-106
405789860	277	putative 2-C-methyl-D-erythritol 2,4-cyc	0.971	0.736	0.887	1e-103
405789862	277	putative 2-C-methyl-D-erythritol 2,4-cyc	0.971	0.736	0.882	1e-102
87201352	317	4-diphosphocytidyl-2-C-methyl-D-erythrit	0.971	0.643	0.882	1e-102
189017042	240	putative chloroplast 2-C-methyl-D-erythr	0.985	0.862	0.874	1e-102
224129526	309	predicted protein [Populus trichocarpa]	0.985	0.669	0.874	1e-102
374639355	304	2-C-methyl-D-erythritol 4-phosphate cyti	0.971	0.671	0.867	1e-101
397133595	314	chloroplast 2-C-methyl-D-erythritol 4-ph	1.0	0.668	0.852	1e-101
206601121	311	4-diphosphocytidyl-methylerythritol 2-ph	0.971	0.655	0.882	1e-101

>gi|164604990|dbj|BAF98291.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/210 (89%), Positives = 198/210 (94%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYSFYTFS+M+EVKEIVVVCDPSY DIFE+ KE INVDLKF+LPGK
Sbjct: 100 MPKQYLPLLGQPIALYSFYTFSKMIEVKEIVVVCDPSYQDIFEDAKENINVDLKFALPGK 159

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGL EVD NSELVC+HDSARPLV S DV+KV+ DA   GAAVLGVPAKATIKE
Sbjct: 160 ERQDSVYSGLHEVDLNSELVCVHDSARPLVSSADVKKVIEDAWINGAAVLGVPAKATIKE 219

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR+GLEVTDDVSIVEHLKHPVYI
Sbjct: 220 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRDGLEVTDDVSIVEHLKHPVYI 279

Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSSESS 210
           TEGSYTNIKVTTPDDLL+AERILNL+SE S
Sbjct: 280 TEGSYTNIKVTTPDDLLLAERILNLNSEES 309

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164604992|dbj|BAF98292.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/210 (89%), Positives = 199/210 (94%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYSFYTFS+M+EVKEIVVVCDPSY DIFE+ KE INVDLKF+LPGK
Sbjct: 100 MPKQYLPLLGQPIALYSFYTFSKMIEVKEIVVVCDPSYQDIFEDAKENINVDLKFALPGK 159

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQEVD NSELVC+HDSARPLV S DV+KV+ DA   GAAVLGVPAKATIKE
Sbjct: 160 ERQDSVYSGLQEVDLNSELVCVHDSARPLVSSADVKKVIEDAWINGAAVLGVPAKATIKE 219

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV+R+GLEVTDDVSIVEHLKHPVYI
Sbjct: 220 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVSRDGLEVTDDVSIVEHLKHPVYI 279

Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSSESS 210
           TEGSYTNIKVTTPDDLL+AERILNL+SE S
Sbjct: 280 TEGSYTNIKVTTPDDLLLAERILNLNSEES 309

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|405789860|gb|AFS28673.1| putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, partial [Olea europaea]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/204 (88%), Positives = 193/204 (94%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYSFYTFS+M EVKEIVVVCDPSY DIFE+ K+ I+VDLKF+LPGK
Sbjct: 66  MPKQYLPLLGQPIALYSFYTFSKMPEVKEIVVVCDPSYQDIFEDAKDSIHVDLKFALPGK 125

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQE+D NSELVCIHDSARPLVL++DV KVL D   +GAAVLGVPAKATIKE
Sbjct: 126 ERQDSVYSGLQEIDLNSELVCIHDSARPLVLAEDVAKVLKDGWLIGAAVLGVPAKATIKE 185

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           AN ESFVV+TLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI+EHLKHPVYI
Sbjct: 186 ANGESFVVKTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIIEHLKHPVYI 245

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           TEGSYTNIKVTTPDDLL+AERILN
Sbjct: 246 TEGSYTNIKVTTPDDLLLAERILN 269

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|405789862|gb|AFS28674.1| putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, partial [Olea europaea]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/204 (88%), Positives = 192/204 (94%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYSFYTFS+M EVKEIVVVCDPSY DIFE+ K+ I+VDLKF+LPGK
Sbjct: 66  MPKQYLPLLGQPIALYSFYTFSKMPEVKEIVVVCDPSYQDIFEDAKDSIHVDLKFALPGK 125

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQE+D NSELVCIHDSARPLVL++DV KVL D   +GAAVLGVPAKATIKE
Sbjct: 126 ERQDSVYSGLQEIDLNSELVCIHDSARPLVLAEDVAKVLKDGWLIGAAVLGVPAKATIKE 185

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           AN ESFVV+TLDRK LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI+EHLKHPVYI
Sbjct: 186 ANGESFVVKTLDRKMLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIIEHLKHPVYI 245

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           TEGSYTNIKVTTPDDLL+AERILN
Sbjct: 246 TEGSYTNIKVTTPDDLLLAERILN 269

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87201352|gb|ABB88837.2| 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase [Stevia rebaudiana]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/204 (88%), Positives = 191/204 (93%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYSFYTFSRM EVKEIVVVCDPSY DIFE+ ++ I+VDLKF+LPGK
Sbjct: 107 MPKQYLPLLGQPIALYSFYTFSRMREVKEIVVVCDPSYQDIFEDARDNISVDLKFALPGK 166

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSV+SGLQ +D  SELVCIHDSARPLV S DV KVL D LRVGA+VLGVPAKATIKE
Sbjct: 167 ERQDSVFSGLQSIDLASELVCIHDSARPLVTSGDVLKVLNDGLRVGASVLGVPAKATIKE 226

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
            NSESFVV+TLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI
Sbjct: 227 GNSESFVVKTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 286

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           T+GSYTNIKVTTPDDLL+AERILN
Sbjct: 287 TQGSYTNIKVTTPDDLLLAERILN 310

Source: Stevia rebaudiana

Species: Stevia rebaudiana

Genus: Stevia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|189017042|gb|ACD70398.1| putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Populus trichocarpa]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/207 (87%), Positives = 194/207 (93%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYS YTFS M EVKEI+VVCDPSY DIFE+++E+INVDLKF+LPGK
Sbjct: 34  MPKQYLPLLGQPIALYSLYTFSEMDEVKEIIVVCDPSYKDIFEDSQEQINVDLKFALPGK 93

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQEVD NSELVCIHDSARPLVLS+DV+KVL D    GAAVLGVP KATIKE
Sbjct: 94  ERQDSVYSGLQEVDLNSELVCIHDSARPLVLSEDVEKVLKDGWINGAAVLGVPVKATIKE 153

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           A+ ESFVVRTLDRKTLWEMQTPQV+KP+LLKKGFELVNREGLEVTDDVSIVEHLKHPVYI
Sbjct: 154 ADGESFVVRTLDRKTLWEMQTPQVMKPELLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 213

Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSS 207
           TEGSYTNIKVTTPDDLL+AERIL+ SS
Sbjct: 214 TEGSYTNIKVTTPDDLLLAERILSTSS 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129526|ref|XP_002328738.1| predicted protein [Populus trichocarpa] gi|222839036|gb|EEE77387.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/207 (87%), Positives = 194/207 (93%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYS YTFS M EVKEI+VVCDPSY DIFE+++E+INVDLKF+LPGK
Sbjct: 103 MPKQYLPLLGQPIALYSLYTFSEMDEVKEIIVVCDPSYKDIFEDSQEQINVDLKFALPGK 162

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQEVD NSELVCIHDSARPLVLS+DV+KVL D    GAAVLGVP KATIKE
Sbjct: 163 ERQDSVYSGLQEVDLNSELVCIHDSARPLVLSEDVEKVLKDGWINGAAVLGVPVKATIKE 222

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           A+ ESFVVRTLDRKTLWEMQTPQV+KP+LLKKGFELVNREGLEVTDDVSIVEHLKHPVYI
Sbjct: 223 ADGESFVVRTLDRKTLWEMQTPQVMKPELLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 282

Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSS 207
           TEGSYTNIKVTTPDDLL+AERIL+ SS
Sbjct: 283 TEGSYTNIKVTTPDDLLLAERILSTSS 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374639355|gb|AEZ55666.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Salvia miltiorrhiza]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/204 (86%), Positives = 193/204 (94%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYSFYTFS+M EVKEI+VVCDPSY DIFE+ ++ I++DLKF+LPGK
Sbjct: 98  MPKQYLPLLGQPIALYSFYTFSKMPEVKEIIVVCDPSYQDIFEDARDNIHIDLKFALPGK 157

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGL+E+D +SELVCIHDSARPLVL+ DV KVL D  R+GAAVLGVPAKATIKE
Sbjct: 158 ERQDSVYSGLEEIDLDSELVCIHDSARPLVLTSDVTKVLKDGKRIGAAVLGVPAKATIKE 217

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           ANSESFVV+TLDRKTLWEMQTPQVI+PDLLKKGFE VNREGLEVTDDVSIVEHLKHPVYI
Sbjct: 218 ANSESFVVKTLDRKTLWEMQTPQVIEPDLLKKGFEYVNREGLEVTDDVSIVEHLKHPVYI 277

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           TEGSYTNIKVTTPDDLL+AERILN
Sbjct: 278 TEGSYTNIKVTTPDDLLLAERILN 301

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397133595|gb|AFO10121.1| chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase [Rauvolfia verticillata]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/210 (85%), Positives = 194/210 (92%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYSFYTF+RM+EVKEIVVVCDPSY DIFE  KEKI VDLKF+LPGK
Sbjct: 104 MPKQYLPLLGQPIALYSFYTFARMLEVKEIVVVCDPSYQDIFEGAKEKIEVDLKFALPGK 163

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSG+Q VD ++ELVCIHD+ARPLVL++D +KVL D L +GAAVLGVPAKATIKE
Sbjct: 164 ERQDSVYSGVQAVDLSAELVCIHDTARPLVLAEDAEKVLKDGLLIGAAVLGVPAKATIKE 223

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           A+S+ FVVRTLDRK LWEMQTPQVIKPDLLKKGFELVNRE LEVTDDVSIVEHLKHPVYI
Sbjct: 224 ADSKFFVVRTLDRKKLWEMQTPQVIKPDLLKKGFELVNRENLEVTDDVSIVEHLKHPVYI 283

Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSSESS 210
           TEGSYTNIKVTTPDDLL+AERILN +S  S
Sbjct: 284 TEGSYTNIKVTTPDDLLLAERILNPTSAKS 313

Source: Rauvolfia verticillata

Species: Rauvolfia verticillata

Genus: Rauvolfia

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206601121|gb|ACI16377.1| 4-diphosphocytidyl-methylerythritol 2-phosphate synthase [Catharanthus roseus]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/204 (88%), Positives = 193/204 (94%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYS YTFSRM EVKEIVVVCDPSY DIFE+TK KI VDLKF+LPGK
Sbjct: 104 MPKQYLPLLGQPIALYSLYTFSRMPEVKEIVVVCDPSYQDIFEDTKAKIQVDLKFALPGK 163

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQ VD ++ELVCIHDSARPLVL++DV+KVL D L +GAAVLGVPAKATIKE
Sbjct: 164 ERQDSVYSGLQAVDLSAELVCIHDSARPLVLAEDVEKVLKDGLSIGAAVLGVPAKATIKE 223

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           A+S+SFVV+TLDRKTLWEMQTPQVIKPDLLKKGFELVNRE LEVTDDVSIVE+LKHPVYI
Sbjct: 224 ADSKSFVVKTLDRKTLWEMQTPQVIKPDLLKKGFELVNRENLEVTDDVSIVEYLKHPVYI 283

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           TEGSYTNIKVTTPDDLL+AERILN
Sbjct: 284 TEGSYTNIKVTTPDDLLVAERILN 307

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2065264	302	ISPD [Arabidopsis thaliana (ta	0.985	0.685	0.816	8.6e-88
TIGR_CMR|BA_0084	226	BA_0084 "2-C-methyl-D-erythrit	0.971	0.902	0.375	1.6e-29
TIGR_CMR|DET_0059	227	DET_0059 "2-C-methyl-D-erythri	0.938	0.867	0.389	1.9e-28
TIGR_CMR|CHY_2342	233	CHY_2342 "2-C-methyl-D-erythri	0.928	0.836	0.318	7.6e-25
TIGR_CMR|SO_3438	249	SO_3438 "4-diphosphocytidyl-2C	0.952	0.803	0.339	3.3e-24
TIGR_CMR|GSU_3368	232	GSU_3368 "4-diphosphocytidyl-2	0.947	0.857	0.326	9e-22
UNIPROTKB|Q46893	236	ispD "4-diphosphocytidyl-2C-me	0.928	0.826	0.330	1.9e-21
UNIPROTKB|Q9KUJ2	232	ispD "2-C-methyl-D-erythritol	0.966	0.875	0.313	8e-21
TIGR_CMR|VC_0528	232	VC_0528 "4-diphosphocytidyl-2C	0.966	0.875	0.313	8e-21
TIGR_CMR|CPS_1072	243	CPS_1072 "2-C-methyl-D-erythri	0.990	0.855	0.292	1.3e-20

TAIR|locus:2065264 ISPD [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 169/207 (81%), Positives = 190/207 (91%)

Query:     1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
             MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL+F++PGK
Sbjct:    96 MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGK 155

Query:    61 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
             ERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D   VGAAVLGVPAKATIKE
Sbjct:   156 ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE 215

Query:   121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
              NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV  EGLEVTDDVSIVE+LKHPVY+
Sbjct:   216 VNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYV 275

Query:   181 TEGSYTNIKVTTPDDLLIAERILNLSS 207
             ++GSYTNIKVTTPDDLL+AERIL+  S
Sbjct:   276 SQGSYTNIKVTTPDDLLLAERILSEDS 302

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0009536 "plastid" evidence=NAS

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA;TAS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TIGR_CMR|BA_0084 BA_0084 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 78/208 (37%), Positives = 115/208 (55%)

Query:     3 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGK 60
             K +L +   PI +++   F +    K I++  +      FEE  +K  V+  ++F   G 
Sbjct:    21 KLFLLINEVPIIVHTLRAFEKDKACKNIIMAINEEERPYFEELMQKYPVEKPVQFIQGGA 80

Query:    61 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
             ERQDSVY+ +Q    + E V +HD ARP V +K +Q VL  A + GA++  VP K T+K+
Sbjct:    81 ERQDSVYNAIQHTT-DVEYVLVHDGARPFVTNKVIQDVLTAAEKYGASICAVPVKDTVKK 139

Query:   121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
                +  VV T++R  L  +QTPQ     LL +      +     TDD S+VE +   V +
Sbjct:   140 VE-QGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCFLGTDDASLVERIGKQVGV 198

Query:   181 TEGSYTNIKVTTPDDLLIAERILNLSSE 208
              EGSY NIKVTTP+DLLIAE  L++  +
Sbjct:   199 VEGSYYNIKVTTPEDLLIAESFLHVQKK 226

GO:0008299 "isoprenoid biosynthetic process" evidence=ISS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=ISS

TIGR_CMR|DET_0059 DET_0059 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 79/203 (38%), Positives = 116/203 (57%)

Query:     3 KQYLPLLGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKE-KINVDLKFSLPGK 60
             K +  L G+P+  ++   F +  E+ +I +VV + +     E  KE   +  +     G+
Sbjct:    25 KIFARLSGKPVLAHTLSVFQQSPEIDDIALVVSEHNLKKAKELVKEYNFSKVIAICSGGE 84

Query:    61 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
              RQDSV SGL  +  +   V IHD ARPL+    + + L  A   G+AV  VP K T+KE
Sbjct:    85 LRQDSVSSGLTAL-CDCGWVLIHDGARPLLDPVSIPEGLEAAKLCGSAVAAVPLKDTVKE 143

Query:   121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
              + E  V +TL R+ L  +QTPQV + D+++K +    R G+  TDD  +VE LK PV I
Sbjct:   144 ISPEGLVEKTLPREKLISVQTPQVFRADIIQKAYR---RVGITATDDAQLVEKLKLPVKI 200

Query:   181 TEGSYTNIKVTTPDDLLIAERIL 203
               G+Y NIK+TTP+DLL+AE +L
Sbjct:   201 FSGAYANIKITTPEDLLMAEILL 223

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=ISS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=ISS

TIGR_CMR|CHY_2342 CHY_2342 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 65/204 (31%), Positives = 111/204 (54%)

Query:     2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGK 60
             PKQ+L L G P+ + +      +  V ++V+    +Y ++  +   + N+  +K +  G 
Sbjct:    22 PKQFLELSGIPVIIITLKRMVNLPIVGQVVLTVPENYIEVAGDLLSRYNLAGIKLTAGGT 81

Query:    61 ERQDSVYSGLQEVDFNSELVCIHDSARPL----VLSKDVQKVLMDALRVGAAVLGVPAKA 116
              R++SV  G++ +  N  ++ +HD  RP      LS+ V+K L +    G A+L VP + 
Sbjct:    82 TRRESVLRGIRALTGNFSIIAVHDGVRPFFPKGALSEGVKK-LSEGY--GGAILAVPLRD 138

Query:   117 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 176
             T+KE   ++ V+ TLDR  L+ +QTPQ+ + + L KG  L  ++ L+  DD  +VE    
Sbjct:   139 TVKEVK-DNVVISTLDRSRLYAVQTPQIFRREALLKGHALGEKQHLDAVDDSILVELCGE 197

Query:   177 PVYITEGSYTNIKVTTPDDLLIAE 200
              V +  G Y N+K+T P+DL  AE
Sbjct:   198 TVAVIPGDYKNLKITWPEDLEFAE 221

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=ISS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=ISS

TIGR_CMR|SO_3438 SO_3438 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 69/203 (33%), Positives = 106/203 (52%)

Query:     2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
             PKQYLPLLGQ I  ++         + +++V   P  +D +   + K +  LK  + G E
Sbjct:    44 PKQYLPLLGQSILAHTLDKLLSHPLISQVIVALHPEDADFYALPQAK-HPKLKTVIGGSE 102

Query:    62 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKE 120
             R +SV + L +   NS  + +HD+ARP +++ D+ K+L   ++    A+L +P + T+K 
Sbjct:   103 RANSVLAALDKAPDNSWAL-VHDAARPCLMASDIDKLLTSRVQFPQGAILAMPVRDTMKR 161

Query:   121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
             ANS   +  T+ R  LW   TPQ+    LL+   +     G  VTD+ S +E       +
Sbjct:   162 ANSLGEINSTVCRDNLWHALTPQLFPTSLLRLHLQGALNAGAVVTDEASAMEWAGISPGL 221

Query:   181 TEGSYTNIKVTTPDDLLIAERIL 203
               G   NIKVT PDDL +AE  L
Sbjct:   222 VAGRADNIKVTHPDDLELAELFL 244

GO:0008299 "isoprenoid biosynthetic process" evidence=ISS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=ISS

TIGR_CMR|GSU_3368 GSU_3368 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 68/208 (32%), Positives = 104/208 (50%)

Query:     3 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIF--EETKEKINVDLKFSLP-- 58
             KQYL L G+PI  ++   F     V  I V+  P     F  +   E+        +   
Sbjct:    22 KQYLILAGRPILAHTLSVFEGASFVDGIFVIT-PEDEIPFCRDHVVERYGFTKVRGIVAG 80

Query:    59 GKERQDSVYSGLQEVD---FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK 115
             G ERQ SV +GL+ ++    + +++ IHD  RP V +  + +    A     A++ VPAK
Sbjct:    81 GAERQHSVLNGLRAMEGTVADDDVILIHDGVRPFVSTDVLARATAVAREDDGALVAVPAK 140

Query:   116 ATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK 175
              T+K    +  +  T  R+TLW  QTPQ  +  +++   E+ + E    TDD  +VE L 
Sbjct:   141 DTVKTVE-DGIITGTPPRETLWLAQTPQAFRYAVIRAAHEIADAERFLGTDDAMLVERLG 199

Query:   176 HPVYITEGSYTNIKVTTPDDLLIAERIL 203
               V I  G Y NIK+TTP+D+++AE  L
Sbjct:   200 RSVRIVVGDYRNIKITTPEDMVLAEAFL 227

GO:0008299 "isoprenoid biosynthetic process" evidence=ISS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=ISS

UNIPROTKB|Q46893 ispD "4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 67/203 (33%), Positives = 102/203 (50%)

Query:     2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
             PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G E
Sbjct:    26 PKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDE 84

Query:    62 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIK 119
             R DSV +GL+    +++ V +HD+ARP +   D+ ++L   +  R G  +L  P + T+K
Sbjct:    85 RADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDTMK 142

Query:   120 EAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK-HP 177
              A   ++ +  T+DR  LW   TPQ    +LL         EG  +TD+ S +E+   HP
Sbjct:   143 RAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHP 202

Query:   178 VYITEGSYTNIKVTTPDDLLIAE 200
               + EG   NIKVT P+DL +AE
Sbjct:   203 -QLVEGRADNIKVTRPEDLALAE 224

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=IEA;IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=IDA

UNIPROTKB|Q9KUJ2 ispD "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 68/217 (31%), Positives = 110/217 (50%)

Query:     2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDI-FEETKEKINVDLKFSL 57
             PKQYL LL + +  ++         ++ +VV     DP ++++        I VD     
Sbjct:    22 PKQYLTLLDKTVLEHTVEHLLEHPLIEHVVVAVSADDPYFANLPLAHHPRVIRVD----- 76

Query:    58 PGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVP 113
              GKER DSV S L+ V  +  SE V +HD+ARP V   D+ +++  AL   +GA +L  P
Sbjct:    77 GGKERADSVLSALEYVCQHRLSEWVLVHDAARPCVTHADITQLITTALAHPIGA-ILASP 135

Query:   114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 173
              + T+K  +    +V T+DR  LW   TPQ+ +   L++      ++ + +TD+ S  E 
Sbjct:   136 VRDTMKRGDHLQQIVHTVDRTALWHALTPQMFRAQSLRERLFAALQQQVTITDEASAFEW 195

Query:   174 LKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 210
                   +  G   N+K+T P+DL +AE  L+ + E S
Sbjct:   196 RGEKPALVAGRADNLKITQPEDLALAEFYLSRNKEKS 232

GO:0008299 "isoprenoid biosynthetic process" evidence=ISS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=ISS

TIGR_CMR|VC_0528 VC_0528 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 68/217 (31%), Positives = 110/217 (50%)

Query:     2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDI-FEETKEKINVDLKFSL 57
             PKQYL LL + +  ++         ++ +VV     DP ++++        I VD     
Sbjct:    22 PKQYLTLLDKTVLEHTVEHLLEHPLIEHVVVAVSADDPYFANLPLAHHPRVIRVD----- 76

Query:    58 PGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVP 113
              GKER DSV S L+ V  +  SE V +HD+ARP V   D+ +++  AL   +GA +L  P
Sbjct:    77 GGKERADSVLSALEYVCQHRLSEWVLVHDAARPCVTHADITQLITTALAHPIGA-ILASP 135

Query:   114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 173
              + T+K  +    +V T+DR  LW   TPQ+ +   L++      ++ + +TD+ S  E 
Sbjct:   136 VRDTMKRGDHLQQIVHTVDRTALWHALTPQMFRAQSLRERLFAALQQQVTITDEASAFEW 195

Query:   174 LKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 210
                   +  G   N+K+T P+DL +AE  L+ + E S
Sbjct:   196 RGEKPALVAGRADNLKITQPEDLALAEFYLSRNKEKS 232

GO:0008299 "isoprenoid biosynthetic process" evidence=ISS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=ISS

TIGR_CMR|CPS_1072 CPS_1072 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 64/219 (29%), Positives = 108/219 (49%)

Query:     2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
             PKQYL +  + I  ++         + +++V         F E++   + D+     G E
Sbjct:    25 PKQYLRINNETILSHTVMRLLSHPLISQVIVALGTE-DQYFAESELAHHKDIIRVNGGTE 83

Query:    62 RQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIK 119
             R +SV +GL+ VD +    V +HD+ARP V  +D+ K++   LR     +L  P + T+K
Sbjct:    84 RVNSVLNGLKAVDSDKYPWVLVHDAARPCVSHQDIDKLITRCLRKDYGGILATPVRDTMK 143

Query:   120 E-------ANSESFVVR-TLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV 171
                     A  ++ ++  T++R+ LW   TPQ+ K D L    E      L++TD+ S +
Sbjct:   144 RGVLIKDSAKGDNTIIESTVEREQLWHALTPQMYKTDELTLAIEQALENSLKITDEASAI 203

Query:   172 EHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 210
             E    P  +   S  NIK+T P+DL +AE  LN  + ++
Sbjct:   204 EQANLPSLLVSASSENIKITHPNDLALAEFYLNKQANNT 242

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=ISS

GO:0050518 "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2RFM0	ISPD_MOOTA	2, ., 7, ., 7, ., 6, 0	0.3689	0.9428	0.8646	yes	no
A7Z0L2	ISPD_BACA2	2, ., 7, ., 7, ., 6, 0	0.4038	0.9666	0.875	yes	no
Q2LUS9	ISPD_SYNAS	2, ., 7, ., 7, ., 6, 0	0.3744	0.9428	0.8461	yes	no
A7GJZ7	ISPD_BACCN	2, ., 7, ., 7, ., 6, 0	0.3826	0.9142	0.8495	yes	no
Q67JP5	ISPD_SYMTH	2, ., 7, ., 7, ., 6, 0	0.3807	0.9	0.8008	yes	no
C3KVS6	ISPD_CLOB6	2, ., 7, ., 7, ., 6, 0	0.3707	0.9666	0.8864	yes	no
A8F958	ISPD_BACP2	2, ., 7, ., 7, ., 6, 0	0.3658	0.9523	0.8733	yes	no
B5YF77	ISPD_DICT6	2, ., 7, ., 7, ., 6, 0	0.4	0.9190	0.8354	yes	no
A9VN98	ISPD_BACWK	2, ., 7, ., 7, ., 6, 0	0.3942	0.9714	0.9026	yes	no
A6LPN9	ISPD_CLOB8	2, ., 7, ., 7, ., 6, 0	0.3980	0.9333	0.8672	yes	no
Q73FC1	ISPD_BACC1	2, ., 7, ., 7, ., 6, 0	0.3819	0.9285	0.8628	yes	no
A5N4M5	ISPD_CLOK5	2, ., 7, ., 7, ., 6, 0	0.3904	0.9523	0.8658	yes	no
Q6HPT2	ISPD_BACHK	2, ., 7, ., 7, ., 6, 0	0.3819	0.9285	0.8628	yes	no
Q9PJT1	ISPD_CHLMU	2, ., 7, ., 7, ., 6, 0	0.3842	0.9095	0.8761	yes	no
B2TIF4	ISPD_CLOBB	2, ., 7, ., 7, ., 6, 0	0.3846	0.9380	0.8794	yes	no
B1KTA8	ISPD_CLOBM	2, ., 7, ., 7, ., 6, 0	0.3902	0.9666	0.8864	yes	no
Q18CD1	ISPD_CLOD6	2, ., 7, ., 7, ., 6, 0	0.3768	0.9714	0.8607	yes	no
Q9KGF8	ISPD_BACHD	2, ., 7, ., 7, ., 6, 0	0.3743	0.9476	0.8728	yes	no
Q824I4	ISPD_CHLCV	2, ., 7, ., 7, ., 6, 0	0.4009	0.9047	0.8962	yes	no
A5D5L4	ISPD_PELTS	2, ., 7, ., 7, ., 6, 0	0.3921	0.9571	0.8445	yes	no
P69834	ISPD_ARATH	2, ., 7, ., 7, ., 6, 0	0.8235	0.9714	0.6754	yes	no
Q8R7S6	ISPD_THETN	2, ., 7, ., 7, ., 6, 0	0.4077	0.9666	0.8942	yes	no
Q0TMM2	ISPD_CLOP1	2, ., 7, ., 7, ., 6, 0	0.4166	0.9476	0.8844	yes	no
Q5N8G1	ISPD_ORYSJ	2, ., 7, ., 7, ., 6, 0	0.7598	0.9714	0.6868	yes	no
Q5L6V2	ISPD_CHLAB	2, ., 7, ., 7, ., 6, 0	0.3960	0.9047	0.8755	yes	no
A7GJ99	ISPD_CLOBL	2, ., 7, ., 7, ., 6, 0	0.3853	0.9666	0.8864	yes	no
Q9Z7X5	ISPD_CHLPN	2, ., 7, ., 7, ., 6, 0	0.3940	0.9095	0.9052	yes	no
A8MLB1	ISPD_ALKOO	2, ., 7, ., 7, ., 6, 0	0.3714	0.9857	0.8771	yes	no
Q63HB4	ISPD_BACCZ	2, ., 7, ., 7, ., 6, 0	0.3819	0.9285	0.8628	yes	no
Q97EC9	ISPD_CLOAB	2, ., 7, ., 7, ., 6, 0	0.375	0.9714	0.8908	yes	no
A0R8F7	ISPD_BACAH	2, ., 7, ., 7, ., 6, 0	0.3819	0.9285	0.8628	yes	no
C1FMX6	ISPD_CLOBJ	2, ., 7, ., 7, ., 6, 0	0.3804	0.9666	0.8864	yes	no
Q6MEE8	ISPD_PARUW	2, ., 7, ., 7, ., 6, 0	0.4827	0.9523	0.8695	yes	no
Q8XHQ3	ISPD_CLOPE	2, ., 7, ., 7, ., 6, 0	0.4166	0.9476	0.8844	yes	no
Q5L433	ISPD_GEOKA	2, ., 7, ., 7, ., 6, 0	0.4146	0.9571	0.8815	yes	no
Q81VV5	ISPD_BACAN	2, ., 7, ., 7, ., 6, 0	0.3819	0.9285	0.8628	yes	no
Q0SQB9	ISPD_CLOPS	2, ., 7, ., 7, ., 6, 0	0.4166	0.9476	0.8844	yes	no
Q253C1	ISPD_CHLFF	2, ., 7, ., 7, ., 6, 0	0.4009	0.9047	0.8962	yes	no
A0PXS4	ISPD_CLONN	2, ., 7, ., 7, ., 6, 0	0.3883	0.9619	0.8744	yes	no
A7FZ94	ISPD_CLOB1	2, ., 7, ., 7, ., 6, 0	0.3804	0.9666	0.8864	yes	no
Q06755	ISPD_BACSU	2, ., 7, ., 7, ., 6, 0	0.3557	0.9666	0.875	yes	no
A5I7N1	ISPD_CLOBH	2, ., 7, ., 7, ., 6, 0	0.3804	0.9666	0.8864	yes	no
A4IJG4	ISPD_GEOTN	2, ., 7, ., 7, ., 6, 0	0.4048	0.9571	0.8815	yes	no
A6TWL0	ISPD_ALKMQ	2, ., 7, ., 7, ., 6, 0	0.3653	0.9476	0.8257	yes	no
B9DY87	ISPD_CLOK1	2, ., 7, ., 7, ., 6, 0	0.3904	0.9523	0.8658	yes	no
B1IGH9	ISPD_CLOBK	2, ., 7, ., 7, ., 6, 0	0.3707	0.9666	0.8864	yes	no
Q81J63	ISPD_BACCR	2, ., 7, ., 7, ., 6, 0	0.3826	0.9142	0.8495	yes	no
A4J0Y3	ISPD_DESRM	2, ., 7, ., 7, ., 6, 0	0.3970	0.9571	0.8589	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.963
4th Layer	2.7.7.60	0.946

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CMS	SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC=2.7.7.60; Flags- Fragment; (230 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.9714.1	hypothetical protein (334 aa)	•		•	•		•	•		0.993
	CMK	SubName- Full=Putative chloroplast 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; EC [...] (336 aa)	•		•	•		•	•		0.993
	estExt_Genewise1_v1.C_LG_XV1514	1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC-1.1.1.267) (471 aa)			•	•		•	•		0.991
	DXR	SubName- Full=Putative chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase; EC=1.1.1.26 [...] (471 aa)			•	•		•	•		0.991
	gw1.I.8813.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC-4.6.1.12) (187 aa)	•	•	•	•			•		0.985
	MCS	SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4. [...] (195 aa)	•	•	•	•			•		0.984
	eugene3.191750001	Predicted protein (208 aa)			•				•		0.860
	HDS	SubName- Full=Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.1 [...] (742 aa)			•			•	•		0.851
	eugene3.33610001	Predicted protein (188 aa)			•			•	•		0.809
	estExt_fgenesh4_pm.C_660111	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC-1.17.7.1) (761 aa)			•			•	•		0.804

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
PLN02728	252	PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phos	1e-146
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	1e-76
PRK00155	227	PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat	2e-74
TIGR00453	217	TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha	4e-66
COG1211	230	COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith	8e-66
pfam01128	221	pfam01128, IspD, Uncharacterized protein family UP	6e-47
PRK13385	230	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phos	1e-36
PRK09382	378	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythri	6e-30

>gnl|CDD|215387 PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score =  406 bits (1045), Expect = e-146
 Identities = 171/208 (82%), Positives = 188/208 (90%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQYLPLLGQPIALYS YTF+RM EVKEIVVVCDPSY D+FEE  E I+V LKF+LPGK
Sbjct: 42  MPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFALPGK 101

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSV++GLQEVD NSELVCIHDSARPLV S D++KVL DA   GAAVLGVP KATIKE
Sbjct: 102 ERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATIKE 161

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           ANS+SFVV+TLDRK LWEMQTPQVIKP+LL++GFELV REGLEVTDDVSIVE LKHPV+I
Sbjct: 162 ANSDSFVVKTLDRKRLWEMQTPQVIKPELLRRGFELVEREGLEVTDDVSIVEALKHPVFI 221

Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSSE 208
           TEGSYTNIKVTTPDD+L+AERILN  S+
Sbjct: 222 TEGSYTNIKVTTPDDMLVAERILNERSD 249

Length = 252

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score =  229 bits (586), Expect = 1e-76
 Identities = 80/201 (39%), Positives = 115/201 (57%), Gaps = 2/201 (0%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE-TKEKINVDLKFSLPG 59
           +PKQ+L L G+P+  ++   F     + EIVVV  P   D+ +E  K  ++  +K    G
Sbjct: 18  IPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEGG 77

Query: 60  KERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI 118
             RQDSV +GL+ +   + ++V IHD+ARP V  + + +++      GAA+  VP   TI
Sbjct: 78  ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTI 137

Query: 119 KEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
           K  + +  VV TLDR+ LW  QTPQ  + DLL K     + EG E TDD S+VE     V
Sbjct: 138 KRVDDDGVVVETLDREKLWAAQTPQAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKV 197

Query: 179 YITEGSYTNIKVTTPDDLLIA 199
            + EGS  NIK+TTP+DL +A
Sbjct: 198 ALVEGSEDNIKITTPEDLALA 218

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

 Score =  224 bits (573), Expect = 2e-74
 Identities = 84/204 (41%), Positives = 115/204 (56%), Gaps = 1/204 (0%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
            PKQYLPL G+PI  ++   F     + EI+VV  P     F E     +  +     G 
Sbjct: 21  RPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGGA 80

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSV +GLQ +  + + V +HD+ARP +   D+ +++  A   GAA+L VP K TIK 
Sbjct: 81  ERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKR 139

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
           ++    +V T DR  LW  QTPQ  + +LL++       EG  +TDD S VE L  PV +
Sbjct: 140 SDDGGGIVDTPDRSGLWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRL 199

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
            EG Y NIK+TTP+DL +AE IL 
Sbjct: 200 VEGRYDNIKITTPEDLALAEAILK 223

Length = 227

>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score =  202 bits (516), Expect = 4e-66
 Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 2/202 (0%)

Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PKQYL L G+P+  ++   F     + E+VVV  P  ++ F++      V  K    G  
Sbjct: 18  PKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVSPDDTEFFQKYLVARAV-PKIVAGGDT 76

Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 121
           RQDSV +GL+ +  ++E V +HD+ARP V  + + ++L    + GAA+L +P   T+K  
Sbjct: 77  RQDSVRNGLKALK-DAEFVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRV 135

Query: 122 NSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYIT 181
            ++ FVV T+DR+ LW  QTPQ  + +LLKK       EG E+TDD S VE L   V + 
Sbjct: 136 EADGFVVETVDREGLWAAQTPQAFRTELLKKALARAKLEGFEITDDASAVEKLGGKVQLV 195

Query: 182 EGSYTNIKVTTPDDLLIAERIL 203
           EG   N K+TTP+DL +AE +L
Sbjct: 196 EGDALNFKITTPEDLALAEALL 217

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217

>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

 Score =  202 bits (515), Expect = 8e-66
 Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 2/205 (0%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE-TKEKINVDLKFSLPG 59
           +PKQYL L G+P+  ++   F     + EIVVV  P     FE+  K   +  ++    G
Sbjct: 22  VPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVVKGG 81

Query: 60  KERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI 118
             RQ+SVY+GLQ +  ++S+ V +HD+ARP +  K +++++  A + GAA+L +P   T+
Sbjct: 82  ATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTL 141

Query: 119 KEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
           K  +++  +V T+DR  LW  QTPQ  + +LLK+       EG E+TDD S +E    PV
Sbjct: 142 KRVDADGNIVETVDRSGLWAAQTPQAFRLELLKQALARAFAEGREITDDASAIEKAGGPV 201

Query: 179 YITEGSYTNIKVTTPDDLLIAERIL 203
            + EGS  N K+TTP+DL IAE IL
Sbjct: 202 SLVEGSADNFKITTPEDLEIAEAIL 226

Length = 230

>gnl|CDD|216314 pfam01128, IspD, Uncharacterized protein family UPF0007

 Score =  153 bits (389), Expect = 6e-47
 Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PKQ+L LLGQP+  ++   F     V  IVV   P  +  F +     ++ L     G  
Sbjct: 19  PKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQLLGDPSIQLVAG--GDT 76

Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKE 120
           RQDSV +GL+ +   ++ V +HD ARP +   D+ ++L         A+L +P   TIK 
Sbjct: 77  RQDSVLNGLKALAGTAKFVLVHDGARPCLPHADLARLLAALETGTQGAILALPVTDTIKR 136

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
             ++  V  T DR  LW  QTPQ  + DLL    +  ++ G E+TDD S+VEH    V +
Sbjct: 137 VEADGVVAGTPDRSGLWAAQTPQGFRVDLLLAAHQRGDQPGAEITDDASLVEHAGGSVQV 196

Query: 181 TEGSYTNIKVTTPDDLLIAERIL 203
             G   N+K+TTP+DL +AE IL
Sbjct: 197 VPGRPDNLKITTPEDLALAEAIL 219

Length = 221

>gnl|CDD|184017 PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

 Score =  127 bits (320), Expect = 1e-36
 Identities = 67/206 (32%), Positives = 116/206 (56%), Gaps = 5/206 (2%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD---LKFSL 57
           + K +L L+G+PI +++   F       +I++V         ++  +++NV    ++   
Sbjct: 20  LNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVK 79

Query: 58  PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT 117
            G ERQ+SV +GL  +  N +++ +HD ARP +    + ++L    + GAA+  V  K T
Sbjct: 80  GGTERQESVAAGLDRIG-NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDT 138

Query: 118 IKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHP 177
           +K    +  V+ T+DR  LW+ QTPQ  +  +L+K   L + +    TD+ S+VE   HP
Sbjct: 139 VKRV-KDKQVIETVDRNELWQGQTPQAFELKILQKAHRLASEQQFLGTDEASLVERSPHP 197

Query: 178 VYITEGSYTNIKVTTPDDLLIAERIL 203
           V + +GSY NIK+TTP+D+ +A+ IL
Sbjct: 198 VKLVQGSYYNIKLTTPEDMPLAKAIL 223

Length = 230

>gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

 Score =  113 bits (285), Expect = 6e-30
 Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 19/206 (9%)

Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
            KQ+L + G+P+ L+     S     KEIVVV  P      ++   +I   +     G  
Sbjct: 24  KKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI-KFVTLVTGGAT 82

Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA---TI 118
           RQ+SV + L+ +D  SE V IHD+ARP V  K++   L++AL     V  +PA     T+
Sbjct: 83  RQESVRNALEALD--SEYVLIHDAARPFV-PKELIDRLIEALDKADCV--LPALPVADTL 137

Query: 119 KEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
           K AN       T+DR+ L  +QTPQ+ +   LK       R   + TDD S  E     V
Sbjct: 138 KRANE------TVDREGLKLIQTPQLSRTKTLKAA--ADGRG--DFTDDSSAAEAAGGKV 187

Query: 179 YITEGSYTNIKVTTPDDLLIAERILN 204
            + EGS    K+T  +DL +A+ +L+
Sbjct: 188 ALVEGSEDLHKLTYKEDLKMADLLLS 213

Length = 378

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	100.0
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	100.0
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	100.0
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	100.0
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	100.0
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	100.0
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	100.0
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	100.0
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.93
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	99.92
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.92
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	99.91
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.89
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.89
PLN02917	293	CMP-KDO synthetase	99.88
COG2068	199	Uncharacterized MobA-related protein [General func	99.88
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.84
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.82
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.81
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.79
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.78
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.78
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.77
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.77
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.76
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	99.76
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.76
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	99.75
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	99.75
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.74
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.73
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.71
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	99.71
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.67
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	99.67
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.66
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	99.65
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	99.62
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.61
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.6
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	99.6
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.59
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	99.59
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.59
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.59
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	99.57
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.56
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.56
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.55
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.55
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	99.55
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.54
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	99.51
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.51
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	99.5
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.5
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.49
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.46
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	99.45
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	99.45
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	99.44
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	99.44
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.43
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.41
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.39
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.39
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.38
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.37
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.37
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.37
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.36
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.36
PRK10122	297	GalU regulator GalF; Provisional	99.33
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.33
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.32
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.26
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.25
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.23
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.23
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.22
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.2
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.09
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.06
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.94
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.91
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	98.82
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	98.8
PF01983	217	CofC: Guanylyl transferase CofC like; InterPro: IP	98.78
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	98.67
COG1920	210	Predicted nucleotidyltransferase, CobY/MobA/RfbA f	98.63
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	98.47
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.3
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.13
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	98.11
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	97.91
KOG1461	673	consensus Translation initiation factor 2B, epsilo	97.03
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	96.94
PF09837	122	DUF2064: Uncharacterized protein conserved in bact	96.88
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	96.15
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	96.02
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	95.9
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	95.74
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	95.7
cd06438	183	EpsO_like EpsO protein participates in the methano	95.46
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	95.06
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	95.05
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	95.0
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	94.91
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	94.81
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	94.78
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	94.72
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	94.66
PRK11204	420	N-glycosyltransferase; Provisional	94.63
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	94.61
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	94.61
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	94.12
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	93.98
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	93.9
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	93.65
COG3222	211	Uncharacterized protein conserved in bacteria [Fun	93.62
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	93.59
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	93.56
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	93.54
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	93.5
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	93.47
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	93.43
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	93.23
PRK14583	444	hmsR N-glycosyltransferase; Provisional	93.15
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	93.04
COG1215	439	Glycosyltransferases, probably involved in cell wa	92.62
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	92.22
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	91.8
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	91.41
COG1216	305	Predicted glycosyltransferases [General function p	91.31
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	90.86
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	90.85
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	90.78
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	90.72
PF13704	97	Glyco_tranf_2_4: Glycosyl transferase family 2	90.22
PRK10073	328	putative glycosyl transferase; Provisional	90.19
KOG2978	238	consensus Dolichol-phosphate mannosyltransferase [	90.19
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	90.16
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	90.03
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	89.88
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	88.82
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	87.79
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	87.14
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	86.95
PRK05454	691	glucosyltransferase MdoH; Provisional	86.44
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	85.1
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	84.94
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	84.72
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	82.94

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=100.00  E-value=3.5e-43  Score=273.97  Aligned_cols=203  Identities=42%  Similarity=0.655  Sum_probs=177.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      +||||++++|+|+|.|+++++.+++.+++|+||+.+++++++++++.+  .++.++.||.+|++|+++||+.++.++|+|
T Consensus        18 ~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~~v~iv~GG~tR~~SV~ngL~~l~~~~d~V   95 (221)
T PF01128_consen   18 IPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK--KKVKIVEGGATRQESVYNGLKALAEDCDIV   95 (221)
T ss_dssp             S-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH--TTEEEEE--SSHHHHHHHHHHCHHCTSSEE
T ss_pred             CCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC--CCEEEecCChhHHHHHHHHHHHHHcCCCEE
Confidence            599999999999999999999999999999999999988888888877  567889999999999999999998666999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      ++|||.+||++++.|+++++.+.+ .++++++.|+.+++++++++|.+.++++|+.+|..||||+|+++.|..++.....
T Consensus        96 lIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTik~v~~~~~v~~tldR~~l~~~QTPQ~F~~~~l~~a~~~a~~  175 (221)
T PF01128_consen   96 LIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTIKRVDDDGFVTETLDRSKLWAVQTPQAFRFELLLEAYEKADE  175 (221)
T ss_dssp             EEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEEEEESTTSBEEEEETGGGEEEEEEEEEEEHHHHHHHHHTHHH
T ss_pred             EEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccEEEEecCCcccccCCHHHeeeecCCCeecHHHHHHHHHHHHh
Confidence            999999999999999999999998 8999999999999999887889999999999999999999999999999998866


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      ++..+||+.++++.+|.++.+|+++..+++|+||+||++||.++++
T Consensus       176 ~~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~~  221 (221)
T PF01128_consen  176 EGFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLKQ  221 (221)
T ss_dssp             HTHHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhcC
Confidence            6667899999999999999999999999999999999999999874

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=100.00  E-value=4.7e-40  Score=255.35  Aligned_cols=205  Identities=39%  Similarity=0.608  Sum_probs=189.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hcCCcEEEecCCccHHHHHHHHHHcccC-CCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLPGKERQDSVYSGLQEVDF-NSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d   78 (210)
                      +|||+++++|+|||+|+++.++.++.+++|+|++..++..++.+..+ ..+..+.++.||.+|.+|+++||+++.. +.+
T Consensus        22 ~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~v~GG~~R~~SV~~gL~~~~~~~~~  101 (230)
T COG1211          22 VPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVVKGGATRQESVYNGLQALSKYDSD  101 (230)
T ss_pred             CCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEEecCCccHHHHHHHHHHHhhccCCC
Confidence            59999999999999999999999999999999999977677777663 3345688999999999999999999974 579


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVN  158 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~  158 (210)
                      +||+||+.+||++++.|+++++.....++++++.|+.+++++.+.+|.+.++++|+.+|..||||+|+.+.|..++....
T Consensus       102 ~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTik~~~~~~~i~~t~~R~~l~~~QTPQ~F~~~~L~~a~~~a~  181 (230)
T COG1211         102 WVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTLKRVDADGNIVETVDRSGLWAAQTPQAFRLELLKQALARAF  181 (230)
T ss_pred             EEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcEEEecCCCCeeeccChhhhhhhhCCccccHHHHHHHHHHHH
Confidence            99999999999999999999977777899999999999999987778899999999999999999999999999999888


Q ss_pred             hcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          159 REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       159 ~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      .++..+||+.++++..|.++..|.++..+++|+||+||++|+.+++.
T Consensus       182 ~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~  228 (230)
T COG1211         182 AEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR  228 (230)
T ss_pred             hcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence            88888999999999999999999999999999999999999999876

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=100.00  E-value=1.2e-38  Score=254.04  Aligned_cols=207  Identities=83%  Similarity=1.233  Sum_probs=186.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||.|+++++.....+++|+||+++++.+.++..+++++..+.++.||.+|++|+++|+..++.+.++|
T Consensus        42 ~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~gg~~r~~SV~~gl~~l~~~~~~V  121 (252)
T PLN02728         42 MPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFALPGKERQDSVFNGLQEVDANSELV  121 (252)
T ss_pred             CCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcCCCCchHHHHHHHHHhccCCCCEE
Confidence            49999999999999999999998766999999999876555656666666666677788999999999999986556899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      ++|+++|||++++.|+++++....+++++++.|+.++++++++++.+..+++|+.+|..||||+|+...|..++.....+
T Consensus       122 lihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dtik~v~~~~~v~~t~~R~~l~~~QTPQ~F~~~~l~~a~~~~~~~  201 (252)
T PLN02728        122 CIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATIKEANSDSFVVKTLDRKRLWEMQTPQVIKPELLRRGFELVERE  201 (252)
T ss_pred             EEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhEEEecCCCceeeccChHHeEEEeCCccchHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999987767788889999999999999999999999999987777


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      ++++||+.++++..|.++.+++++..+++|+||+||..|+.+++.+.
T Consensus       202 ~~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~~~  248 (252)
T PLN02728        202 GLEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNERS  248 (252)
T ss_pred             CCCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhhcc
Confidence            78899999999999999999999999999999999999999998654

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=100.00  E-value=7.1e-36  Score=236.37  Aligned_cols=207  Identities=32%  Similarity=0.555  Sum_probs=180.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC---cEEEecCCccHHHHHHHHHHcccCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLPGKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~---~v~~~~~~~~~~~si~~~l~~~~~~~   77 (210)
                      .||+|++++|+|||.|+++++.+++.+++|+||++++++..+.+.+++++.   .+.++.++.++.+|+++|++.++ +.
T Consensus        20 ~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~r~~sv~~gl~~~~-~~   98 (230)
T PRK13385         20 LNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKGGTERQESVAAGLDRIG-NE   98 (230)
T ss_pred             CCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCCCchHHHHHHHHHHhcc-CC
Confidence            489999999999999999999988778999999998765556666666653   35677788889999999999985 35


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHH
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV  157 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~  157 (210)
                      +.|++|+||+||+++++|+++++.+.++++++++.++.++++..+ +|.+..+++|+.++.+|+||+|+++.|..++...
T Consensus        99 d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~-~~~~~~~i~r~~~~~~qtpq~f~~~~l~~~~~~~  177 (230)
T PRK13385         99 DVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDTVKRVK-DKQVIETVDRNELWQGQTPQAFELKILQKAHRLA  177 (230)
T ss_pred             CeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccceEEEEc-CCeeEeccCHHHHhhhcCCceeeHHHHHHHHHHH
Confidence            789999999999999999999999888888899999998887764 4667778899999999999999999999998865


Q ss_pred             HhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccCC
Q 028320          158 NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES  209 (210)
Q Consensus       158 ~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~~  209 (210)
                      ...+.+++|+..++...|.++.+++++..+++||||+||+.|+.+++..++.
T Consensus       178 ~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~~~~~  229 (230)
T PRK13385        178 SEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQGDIAD  229 (230)
T ss_pred             HhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhhcccC
Confidence            4455678999999999999999999999999999999999999999887653

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=100.00  E-value=1.2e-33  Score=223.22  Aligned_cols=207  Identities=41%  Similarity=0.610  Sum_probs=175.8

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+|+++++.+..+.+........+.++.++.++.+|+..|++.++ +.+.+
T Consensus        21 ~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~-~~d~v   99 (227)
T PRK00155         21 RPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGGAERQDSVLNGLQALP-DDDWV   99 (227)
T ss_pred             CCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCCcchHHHHHHHHHHhCC-CCCEE
Confidence            38999999999999999999998777899999999876433332221111235567777788999999999884 36799


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      ++++||+||+++++++++++.+...++++++.|+.+++++++++|.+.++++|+.++..|+|++|+.+.|..++...+++
T Consensus       100 lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~  179 (227)
T PRK00155        100 LVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKRSDDGGGIVDTPDRSGLWAAQTPQGFRIELLREALARALAE  179 (227)
T ss_pred             EEccCccCCCCHHHHHHHHHHHhhCCCEEEEEeccccEEEEcCCCceeecCChHHheeeeCCccchHHHHHHHHHHHHhc
Confidence            99999999999999999999987777888888988887666445777788899999999999999999999999888777


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                      ++|++|...+++..|.++..+.++..++|||||+||+.||.+++++++
T Consensus       180 ~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~~~~  227 (227)
T PRK00155        180 GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKRRIA  227 (227)
T ss_pred             CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHhccC
Confidence            889999999999999999999888889999999999999999998864

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=100.00  E-value=2e-32  Score=214.75  Aligned_cols=201  Identities=39%  Similarity=0.627  Sum_probs=170.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+||+++++...+.+.+... ..+.++.++.++.+|+..|+..++ +.|.+
T Consensus        17 ~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sl~~~l~~~~-~~d~v   94 (217)
T TIGR00453        17 VPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-AVPKIVAGGDTRQDSVRNGLKALK-DAEWV   94 (217)
T ss_pred             CCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-CcEEEeCCCchHHHHHHHHHHhCC-CCCEE
Confidence            3899999999999999999999886689999999987544444433321 134566777778999999999882 36899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      ++++||+||+++++|+++++.+...++++++.|..+++..++++|.+..+++|+.++.+|+|++|+...+..++....+.
T Consensus        95 lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~  174 (217)
T TIGR00453        95 LVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRVEADGFIVETVDREGLWAAQTPQAFRTELLKKALARAKEE  174 (217)
T ss_pred             EEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccceEEEEcCCCceeecCChHHeEEEeCCCcccHHHHHHHHHHHHhc
Confidence            99999999999999999999887777778888988886665556778888999999999999999999999988776667


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHh
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~  203 (210)
                      +++++|...+++..|.++..+.++..+++||||+||+.|++++
T Consensus       175 ~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~~  217 (217)
T TIGR00453       175 GFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEALL  217 (217)
T ss_pred             CCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHhC
Confidence            8889999999999999999999988889999999999999874

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=100.00  E-value=9.4e-32  Score=210.88  Aligned_cols=198  Identities=40%  Similarity=0.598  Sum_probs=170.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh--cCCcEEEecCCccHHHHHHHHHHccc-CCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPGKERQDSVYSGLQEVD-FNS   77 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~--~~~~v~~~~~~~~~~~si~~~l~~~~-~~~   77 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+||++++........ +.  ....+.++.++.++.+|+..|++.++ .+.
T Consensus        18 ~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~si~~al~~~~~~~~   96 (218)
T cd02516          18 IPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKEL-AKYGLSKVVKIVEGGATRQDSVLNGLKALPDADP   96 (218)
T ss_pred             CCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHH-HhcccCCCeEEECCchHHHHHHHHHHHhcccCCC
Confidence            389999999999999999999988768999999998764333222 22  22345667776778999999999984 346


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHH
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV  157 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~  157 (210)
                      +.+++++||+||+++++++++++.+...++++++.|+.+++++.+++|.+.++++|+.++.+++|++|+.+.+.+++...
T Consensus        97 ~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~P~~f~~~~~~~~~~~~  176 (218)
T cd02516          97 DIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTIKRVDDDGVVVETLDREKLWAAQTPQAFRLDLLLKAHRQA  176 (218)
T ss_pred             CEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccccEEEecCCCceeecCChHHhhhhcCCCcccHHHHHHHHHHH
Confidence            89999999999999999999999998888888899998887776667889899999999999999999999999999988


Q ss_pred             HhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320          158 NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA  199 (210)
Q Consensus       158 ~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a  199 (210)
                      +++|+|+||...++...|.++..+.++..++|||||+||+.|
T Consensus       177 ~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~  218 (218)
T cd02516         177 SEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA  218 (218)
T ss_pred             HhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence            888899999999999999999999988889999999999764

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=100.00  E-value=5.3e-31  Score=220.70  Aligned_cols=192  Identities=32%  Similarity=0.413  Sum_probs=163.8

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+||+++++...+......+. .+.++.|+.+|++|+++|++.++  .++|
T Consensus        23 ~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~-~v~~v~gG~~r~~SV~~gL~~l~--~d~V   99 (378)
T PRK09382         23 VKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIK-FVTLVTGGATRQESVRNALEALD--SEYV   99 (378)
T ss_pred             CCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCC-eEEEeCCCchHHHHHHHHHHhcC--CCeE
Confidence            48999999999999999999999877899999999876433333332222 25567888899999999999986  4899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      ++|+||+||++++.++++++.+.++++++++.|+.+++++..      .+++|+.++..||||.|+...+..++    ..
T Consensus       100 LVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~------~tldR~~l~~~QTPQ~f~~~~l~~a~----~~  169 (378)
T PRK09382        100 LIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRAN------ETVDREGLKLIQTPQLSRTKTLKAAA----DG  169 (378)
T ss_pred             EEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEee------eEcCcccEEEEECCCCCCHHHHHHHH----hC
Confidence            999999999999999999999888888999999999876532      36899999999999999988776543    23


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      ++++||+.++++..|.++.++.++..+++|+||+||..|+.+++.
T Consensus       170 ~~~~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~  214 (378)
T PRK09382        170 RGDFTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP  214 (378)
T ss_pred             CCCcccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence            567899999999999999999999999999999999999999875

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.93  E-value=3.1e-24  Score=170.47  Aligned_cols=189  Identities=17%  Similarity=0.217  Sum_probs=136.7

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE----ecCCccHHHHHHHHHHcccCCC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF----SLPGKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~----~~~~~~~~~si~~~l~~~~~~~   77 (210)
                      +|+|++++|||||.|+++++.+++ +++|+|++++++   +.+.+++++..+..    ..+|.++..++..++.. . +.
T Consensus        15 ~K~L~~l~GkPli~~~le~~~~~~-~d~VvVvt~~~~---i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~~~l~~-~-~~   88 (238)
T TIGR00466        15 GKPLEDIFGKPMIVHVAENANESG-ADRCIVATDDES---VAQTCQKFGIEVCMTSKHHNSGTERLAEVVEKLAL-K-DD   88 (238)
T ss_pred             CCeecccCCcCHHHHHHHHHHhCC-CCeEEEEeCHHH---HHHHHHHcCCEEEEeCCCCCChhHHHHHHHHHhCC-C-CC
Confidence            799999999999999999999886 999999998654   46677777765433    23456666665555532 2 36


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccc--------ceEEc-cCCCce---e-ee--cCccCeeeec
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKA--------TIKEA-NSESFV---V-RT--LDRKTLWEMQ  140 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~--------~~~~~-~~~g~v---~-~~--~~r~~~~~~~  140 (210)
                      |+|++++||+||+++++|+++++.+..  .+.++++.|+.+        .++.+ +.+|++   . ..  .+|+.++..+
T Consensus        89 d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~  168 (238)
T TIGR00466        89 ERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQ  168 (238)
T ss_pred             CEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccc
Confidence            899999999999999999999998854  466888888876        55555 446642   2 22  3677766667


Q ss_pred             CCc-----------ccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCC-CccccChhhHH
Q 028320          141 TPQ-----------VIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKVTTPDDLL  197 (210)
Q Consensus       141 ~P~-----------~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~~-~~dIdt~~Dl~  197 (210)
                      +|+           +|+++.|..... .....++..+..+.++  ++|.++.++..+.. ..+||||+|++
T Consensus       169 tpq~~~~~~h~Giy~~~~~~L~~~~~-~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~~  238 (238)
T TIGR00466       169 TPVGDNLLRHIGIYGYRAGFIEEYVA-WKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE  238 (238)
T ss_pred             cccccceeEEEEEEeCCHHHHHHHHh-CCCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHcC
Confidence            775           356777666443 2333355566666665  48999998776555 68999999984

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=8.1e-24  Score=161.01  Aligned_cols=197  Identities=16%  Similarity=0.212  Sum_probs=138.5

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC----CccHHHHHHHHHHccc-CC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP----GKERQDSVYSGLQEVD-FN   76 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~----~~~~~~si~~~l~~~~-~~   76 (210)
                      .|+|..|+|+|||.|+.+++.+++ .++++|+||++.   |.+.++++|..+.++..    |++|   +..+++.+. .+
T Consensus        19 gKPLadI~GkpmI~rV~e~a~~s~-~~rvvVATDde~---I~~av~~~G~~avmT~~~h~SGTdR---~~Ev~~~l~~~~   91 (247)
T COG1212          19 GKPLADIGGKPMIVRVAERALKSG-ADRVVVATDDER---IAEAVQAFGGEAVMTSKDHQSGTDR---LAEVVEKLGLPD   91 (247)
T ss_pred             CCchhhhCCchHHHHHHHHHHHcC-CCeEEEEcCCHH---HHHHHHHhCCEEEecCCCCCCccHH---HHHHHHhcCCCc
Confidence            499999999999999999999995 899999999875   57888999988877543    4444   556666663 35


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--------eEEc-cCCCcee----eec--Ccc-----
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--------IKEA-NSESFVV----RTL--DRK-----  134 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~--------~~~~-~~~g~v~----~~~--~r~-----  134 (210)
                      .++|++++||.||+.++.|+++++.++...+  +.++.+..+.        ++.+ |.+|+.-    .++  .|+     
T Consensus        92 ~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~~~  171 (247)
T COG1212          92 DEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDNFGGT  171 (247)
T ss_pred             ceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccccCCc
Confidence            6899999999999999999999999987644  5666666543        2322 3334321    122  233     


Q ss_pred             CeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCC-CCccccChhhHHHHHHHhhcc
Q 028320          135 TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSY-TNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       135 ~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      .++..-.-++|+++.|.+...... ..++-.+..+.++  ++|.++++....+ .+.+||||+||+.+++++...
T Consensus       172 p~l~HIGIYayr~~~L~~f~~~~p-s~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~~  245 (247)
T COG1212         172 PFLRHIGIYAYRAGFLERFVALKP-SPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSNN  245 (247)
T ss_pred             chhheeehHHhHHHHHHHHHhcCC-chhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHhh
Confidence            222233336677777666544321 1122333344444  5899999876664 459999999999999998754

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.92  E-value=1.7e-23  Score=164.51  Aligned_cols=190  Identities=13%  Similarity=0.090  Sum_probs=133.3

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE------ecCCccHHHHHHHHHHcccC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF   75 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~------~~~~~~~~~si~~~l~~~~~   75 (210)
                      +|++++++|+|||.|+++++.+++.+++|+|+|++++   +.+.++++|..+.+      ..+++++.+++.+|++.++.
T Consensus        15 ~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~---i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~   91 (222)
T TIGR03584        15 RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEE---IAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKL   91 (222)
T ss_pred             CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHH---HHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhh
Confidence            5999999999999999999999998999999888754   46677788876544      34566778999999998842


Q ss_pred             --CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc-ceE--EccCCCceeeecCccCeeeecCCcccChH
Q 028320           76 --NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-TIK--EANSESFVVRTLDRKTLWEMQTPQVIKPD  148 (210)
Q Consensus        76 --~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~-~~~--~~~~~g~v~~~~~r~~~~~~~~P~~f~~~  148 (210)
                        +.|+|++++||+||+++++|+++++.+...  ++++++++... +.+  ..+++|......+....        -+++
T Consensus        92 ~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~rQ  163 (222)
T TIGR03584        92 QKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAFKLKENGGVEMFFPEHFN--------TRSQ  163 (222)
T ss_pred             cCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHheEECCCCcEEecCCCccc--------CCCC
Confidence              468999999999999999999999998753  56777777542 222  22334543322111111        1334


Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHHh---CCCCeE-EEecCCCCccccChhhHHHHHHHhh
Q 028320          149 LLKKGFELVNREGLEVTDDVSIVEH---LKHPVY-ITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       149 ~l~~~~~~~~~~~~~~~d~~~~~~~---~g~~v~-~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      .+...|..+  ..+|+.....+.+.   .|.++. ++++...++||||++||+.||.+++
T Consensus       164 d~~~~y~~n--ga~y~~~~~~~~~~~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~~  221 (222)
T TIGR03584       164 DLEEAYHDA--GQFYWGKSQAWLESGPIFSPHSIPIVLPRHLVQDIDTLEDWERAELLYK  221 (222)
T ss_pred             CCchheeeC--CeEEEEEHHHHHhcCCccCCCcEEEEeCccceeCCCCHHHHHHHHHHHh
Confidence            444434321  12555554444432   355544 4666778999999999999999874

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.91  E-value=5.9e-24  Score=160.58  Aligned_cols=194  Identities=15%  Similarity=0.205  Sum_probs=146.6

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE------ecCCccHHHHHHHHHHcccC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF   75 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~------~~~~~~~~~si~~~l~~~~~   75 (210)
                      .||+.+++|+|||.|+|++++.++.||+|+|+++++.   |.+.+++||+++.+      ..+.++...++.++++....
T Consensus        19 ~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~---Il~~A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~~   95 (228)
T COG1083          19 NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEE---ILEEAKKYGAKVFLKRPKELASDRASTIDAALHALESFNI   95 (228)
T ss_pred             ccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHH---HHHHHHHhCccccccCChhhccCchhHHHHHHHHHHHhcc
Confidence            5999999999999999999999999999999999875   46788899987633      23333334567888888766


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccceEEc--cCCCceeeecCccCeeeecCCc-ccChHHH
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATIKEA--NSESFVVRTLDRKTLWEMQTPQ-VIKPDLL  150 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~--~~~g~v~~~~~r~~~~~~~~P~-~f~~~~l  150 (210)
                      ..+.++.++++.||++..+|++.++.+.+.  ++.++++|+....+..  ..+|.+...-+        .|. .-+++.|
T Consensus        96 ~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~~~~~~~~~--------~~~~~~rrQ~L  167 (228)
T COG1083          96 DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNE--------DPDFETRRQDL  167 (228)
T ss_pred             ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHhcCCceeeccc--------CCccccccccc
Confidence            678899999999999999999999999764  5689999987654332  22344332111        122 2356777


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHh---C-CCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320          151 KKGFELVNREGLEVTDDVSIVEH---L-KHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       151 ~~~~~~~~~~~~~~~d~~~~~~~---~-g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                      ..+|..++  .+|+.+...++++   + +....++++....+||||+.||+.+|.++..+..
T Consensus       168 pk~Y~~Ng--aiYi~~~~~l~e~~~~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~~~  227 (228)
T COG1083         168 PKAYRENG--AIYINKKDALLENDCFFIPNTILYEMPEDESIDIDTELDLEIAENLIFLKEE  227 (228)
T ss_pred             hhhhhhcC--cEEEehHHHHhhcCceecCCceEEEcCcccccccccHHhHHHHHHHhhhhhc
Confidence            87787642  3678777666664   3 3556678888899999999999999999876654

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.89  E-value=4.1e-22  Score=164.27  Aligned_cols=205  Identities=19%  Similarity=0.213  Sum_probs=158.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCC-C
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFN-S   77 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~-~   77 (210)
                      +||.|++++||||++|+++++.... .++++||+++.. +.+++.+.+.. ++.|+.+  .-...++++.|+.++..+ .
T Consensus        20 lPKVLH~vaGkpMl~hVi~~a~~l~-~~~i~vVvGh~a-e~V~~~~~~~~-~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~   96 (460)
T COG1207          20 LPKVLHPVAGKPMLEHVIDAARALG-PDDIVVVVGHGA-EQVREALAERD-DVEFVLQEEQLGTGHAVLQALPALADDYD   96 (460)
T ss_pred             CcccchhccCccHHHHHHHHHhhcC-cceEEEEEcCCH-HHHHHHhcccc-CceEEEecccCChHHHHHhhhhhhhcCCC
Confidence            5999999999999999999999875 799999999997 56777665433 4566554  234489999999999433 3


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccceE--Ec--cCCCceeeecCc-------cCeeeecCC-c
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIK--EA--NSESFVVRTLDR-------KTLWEMQTP-Q  143 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~--~~--~~~g~v~~~~~r-------~~~~~~~~P-~  143 (210)
                      ..+|++.||.||+++++++++++.....+  ..+......+|..  ++  +.+|.+.++++.       ..+..+++- +
T Consensus        97 g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtGiy  176 (460)
T COG1207          97 GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTGIY  176 (460)
T ss_pred             CcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeeeEE
Confidence            47899999999999999999998876544  3566666667632  22  335677776642       335555553 6


Q ss_pred             ccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcccC
Q 028320          144 VIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       144 ~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                      +|....|.+|+.+...+    +||+||-..++...|.++..+..+  .+..+|+++.+|..+|+++++|++
T Consensus       177 ~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~  247 (460)
T COG1207         177 AFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIA  247 (460)
T ss_pred             EEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHH
Confidence            78888888888876664    379999999999999999876553  578999999999999999998864

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.89  E-value=2.4e-22  Score=157.94  Aligned_cols=188  Identities=15%  Similarity=0.195  Sum_probs=129.4

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE------ecCCccHHHHHHHHHHcccC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF   75 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~------~~~~~~~~~si~~~l~~~~~   75 (210)
                      +|+|++++|+|||+|+++++.+++.+++|+|+++++.   +.+.+.+++..+.+      ..|+.++.+++.+|+++++.
T Consensus        17 ~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~   93 (223)
T cd02513          17 GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEE---IAEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEE   93 (223)
T ss_pred             CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHH---HHHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHH
Confidence            5999999999999999999999877899999886543   44556666652222      23445668899999988753


Q ss_pred             ---CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccceEEc---cCCCcee-eecCccCeeeecCCcccC
Q 028320           76 ---NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATIKEA---NSESFVV-RTLDRKTLWEMQTPQVIK  146 (210)
Q Consensus        76 ---~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~---~~~g~v~-~~~~r~~~~~~~~P~~f~  146 (210)
                         +.+.+++++||+||+++++|+++++.+...  ++++++.+..++.+..   .++|... ...+++..+.+++|+.|.
T Consensus        94 ~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~  173 (223)
T cd02513          94 LGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDNGLEPVNYPEDKRTRRQDLPPAYH  173 (223)
T ss_pred             hCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccCCceeccCcccccCCcCCChhHee
Confidence               258999999999999999999999988654  4577777766543321   1122111 112344456666776654


Q ss_pred             hHHHHHHHHHHHhcCCCCCcHHHHHH---hCCCCeE-EEecCCCCccccChhhHHHHHHHh
Q 028320          147 PDLLKKGFELVNREGLEVTDDVSIVE---HLKHPVY-ITEGSYTNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~~d~~~~~~---~~g~~v~-~v~~~~~~~dIdt~~Dl~~a~~~~  203 (210)
                      ...           ++|......+.+   ..|.++. ++.++..++||||++||+.||.++
T Consensus       174 ~n~-----------~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~~  223 (223)
T cd02513         174 ENG-----------AIYIAKREALLESNSFFGGKTGPYEMPRERSIDIDTEEDFELAEALL  223 (223)
T ss_pred             ECC-----------EEEEEEHHHHHhcCCccCCCeEEEEeCccceeCCCCHHHHHHHHHhC
Confidence            211           233333333333   2467774 566677899999999999999864

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>PLN02917 CMP-KDO synthetase

Probab=99.88  E-value=3e-21  Score=157.41  Aligned_cols=199  Identities=14%  Similarity=0.174  Sum_probs=135.2

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe----cCCccHHHHHHHHHHcccCCC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS----LPGKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~----~~~~~~~~si~~~l~~~~~~~   77 (210)
                      +|+|++++|+|||.|+++++.+++.++.|+|+++++   .+.+.+.++++.+.+.    .+|   .+++..|++.++.+.
T Consensus        63 ~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~~e---~I~~~~~~~~v~vi~~~~~~~~G---T~~~~~a~~~l~~~~  136 (293)
T PLN02917         63 GKPLVHILGKPMIQRTWERAKLATTLDHIVVATDDE---RIAECCRGFGADVIMTSESCRNG---TERCNEALKKLEKKY  136 (293)
T ss_pred             CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECChH---HHHHHHHHcCCEEEeCCcccCCc---hHHHHHHHHhccCCC
Confidence            699999999999999999999887667777665543   4566777666554332    233   344567888776446


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcC-CeE--Eeeec--ccc-----eEEc-cCCCc-e---eeecC--cc------
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVG-AAV--LGVPA--KAT-----IKEA-NSESF-V---VRTLD--RK------  134 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~-~~~--~~~~~--~~~-----~~~~-~~~g~-v---~~~~~--r~------  134 (210)
                      |.|++++||+||+++++|+++++.+.... ..+  .+.++  .++     ++.+ +++|. +   +.+++  ++      
T Consensus       137 d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~  216 (293)
T PLN02917        137 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQ  216 (293)
T ss_pred             CEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccc
Confidence            89999999999999999999999886543 322  22222  221     2211 33464 2   23232  22      


Q ss_pred             Ceeeec-CCcccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccCC
Q 028320          135 TLWEMQ-TPQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES  209 (210)
Q Consensus       135 ~~~~~~-~P~~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~~  209 (210)
                      .++..+ .-++|+.+.|. .+.....+    .+|++|-.  +.+.|.++..+..+...++||||+||+.++++++++..|
T Consensus       217 ~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~~~  293 (293)
T PLN02917        217 FPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS  293 (293)
T ss_pred             cceEEEEEEEEeCHHHHH-HHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence            123333 34789988888 55544332    25677654  447888888776666788999999999999999887654

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.88  E-value=5.5e-21  Score=144.39  Aligned_cols=176  Identities=20%  Similarity=0.248  Sum_probs=130.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .||+|+|+.|+||+.|+++++.+++ +++++||++++............+..+....+ ....++|++.|+.++..+.+.
T Consensus        21 ~~KlLap~~g~plv~~~~~~a~~a~-~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~   99 (199)
T COG2068          21 QPKLLAPLDGKPLVRASAETALSAG-LDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDG   99 (199)
T ss_pred             CcceecccCCCcHHHHHHHHHHhcC-CCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhhHhHHHHHHHHhcccCCCe
Confidence            3899999999999999999999886 89999999998433333333333333322222 223489999999999754479


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      ++++.+|||+++++++.++++.+.+.+  ..+.|.+.     +..|               .|..|.+..|..+.+..++
T Consensus       100 v~~~lgDmP~V~~~t~~rl~~~~~~~~--~~v~p~~~-----g~rG---------------~Pv~~~~~~~~~l~~l~GD  157 (199)
T COG2068         100 VVLMLGDMPQVTPATVRRLIAAFRARG--AAVRPVYG-----GARG---------------HPVLLSKDLFPALARLSGD  157 (199)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhccccC--ceeeeecc-----CCcC---------------CceeechhHHHHHhhcCCc
Confidence            999999999999999999999987764  23444432     2224               5888988887554443332


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEec-CCCCccccChhhHHHHHHHhh
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~-~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                           +....+++..+.....|+. .....|||||+||..+..++.
T Consensus       158 -----~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~  198 (199)
T COG2068         158 -----VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR  198 (199)
T ss_pred             -----hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence                 3356777888888877766 567899999999999998875

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.84  E-value=5e-19  Score=140.55  Aligned_cols=196  Identities=16%  Similarity=0.224  Sum_probs=122.4

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCc-cHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~-~~~~si~~~l~~~~~~~d~v   80 (210)
                      +|+|++++|||||+|+++++.+++.+++|+|+++++   .+.+.+++++.++.+..... .....+..++..+.  .|.+
T Consensus        18 ~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~---~i~~~~~~~~~~v~~~~~~~~~g~~~~~~a~~~~~--~d~~   92 (238)
T PRK13368         18 GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQ---RIEDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKIE--ADIY   92 (238)
T ss_pred             CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChH---HHHHHHHHcCCeEEecCccCCCccHHHHHHHHhCC--CCEE
Confidence            499999999999999999999986689999999764   35677777776654432211 11334667777763  5789


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcC--CeE-Eeeecc------cceE---EccCCCceeeecCc-----cC-eeeecCC
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVG--AAV-LGVPAK------ATIK---EANSESFVVRTLDR-----KT-LWEMQTP  142 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~--~~~-~~~~~~------~~~~---~~~~~g~v~~~~~r-----~~-~~~~~~P  142 (210)
                      ++++||+||+++++++++++.+...+  .++ .+.+..      ++..   ..+++|.+....+.     +. ......+
T Consensus        93 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~  172 (238)
T PRK13368         93 INVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDGESARYLK  172 (238)
T ss_pred             EEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCCCCCCCCCCceeE
Confidence            99999999999999999999886543  232 232221      1211   22345666433311     11 1101122


Q ss_pred             ----cccChHHHHHHHHHHHhcCCC-CCc-HHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHh
Q 028320          143 ----QVIKPDLLKKGFELVNREGLE-VTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       143 ----~~f~~~~l~~~~~~~~~~~~~-~~d-~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~  203 (210)
                          ++|+...|.. +......+.. +.. +...+-..|.++..+..+..++|||||+||..|+.++
T Consensus       173 n~giy~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~~  238 (238)
T PRK13368        173 HVGIYAFRRDVLQQ-FSQLPETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRAIM  238 (238)
T ss_pred             EEEEEEeCHHHHHH-HHcCCCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHhC
Confidence                6677666554 2211101110 111 1111223677787776767899999999999999864

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.82  E-value=2e-18  Score=137.22  Aligned_cols=197  Identities=16%  Similarity=0.207  Sum_probs=126.3

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC-ccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~-~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||+|++++|||||+|+++++.+++.+++|+|+++++   .+.+.+.+++..+.+.... .....++..++..+..+.+.+
T Consensus        17 ~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~d~v   93 (239)
T cd02517          17 GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDE---RIADAVESFGGKVVMTSPDHPSGTDRIAEVAEKLDADDDIV   93 (239)
T ss_pred             CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcH---HHHHHHHHcCCEEEEcCcccCchhHHHHHHHHhcCCCCCEE
Confidence            799999999999999999999885589999998763   3566666677655443321 122345777777765334789


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhc-CC--eEEeeecccce---------EEccCCCceeeecC---cc-------Ceee
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRV-GA--AVLGVPAKATI---------KEANSESFVVRTLD---RK-------TLWE  138 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~-~~--~~~~~~~~~~~---------~~~~~~g~v~~~~~---r~-------~~~~  138 (210)
                      +++.||+||+++++++++++.+... ++  ++++.++.++.         ...+++|.+.....   .+       ....
T Consensus        94 lv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  173 (239)
T cd02517          94 VNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDSSEDFPYY  173 (239)
T ss_pred             EEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCCCCCCcee
Confidence            9999999999999999999887654 33  44555654321         12244565542211   00       0111


Q ss_pred             ec-CCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEecCCCCccccChhhHHHHHHH
Q 028320          139 MQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITEGSYTNIKVTTPDDLLIAERI  202 (210)
Q Consensus       139 ~~-~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~  202 (210)
                      .. .-+.|+...+..+... ....++.++...++  ...|.++..+..+..+++||||+||..|+++
T Consensus       174 ~~~Giy~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~~  239 (239)
T cd02517         174 KHIGIYAYRRDFLLRFAAL-PPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEAL  239 (239)
T ss_pred             EEEEEEEECHHHHHHHHhC-CCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHhC
Confidence            22 2256676665554332 11223445443332  3467778776555569999999999999864

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.81  E-value=1.9e-18  Score=136.20  Aligned_cols=194  Identities=16%  Similarity=0.164  Sum_probs=133.8

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      +||+|++++|+|||+|+++++.+++ +++++|+++++. +.+.+.+.++++.+.......+..+++.+|+..++.+.+.+
T Consensus        16 ~pK~l~~v~gkpli~~~i~~l~~~~-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~g~~~ai~~a~~~~~~~~~~v   93 (229)
T cd02540          16 LPKVLHPLAGKPMLEHVLDAARALG-PDRIVVVVGHGA-EQVKKALANPNVEFVLQEEQLGTGHAVKQALPALKDFEGDV   93 (229)
T ss_pred             CChhcceeCCccHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhCCCCcEEEECCCCCCCHHHHHHHHHhhccCCCeE
Confidence            4899999999999999999999986 899999998875 56777776655443222223345889999999886335789


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccce----EEccCCCceeeecCccCe-------eeecC-CcccC
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQT-PQVIK  146 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~~-P~~f~  146 (210)
                      ++++||+||++.+.++++++.+.+.+  .++++.+..++.    ...+++|.+..+.++...       ...++ .+.|+
T Consensus        94 li~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ek~~~~~~~~~~~~~~~giy~~~  173 (229)
T cd02540          94 LVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVNAGIYAFD  173 (229)
T ss_pred             EEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCCCCEEEEEECCCCChHHHhhceEEeEEEEEE
Confidence            99999999999999999999886643  344555554441    112445667655543211       22333 57788


Q ss_pred             hHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhH
Q 028320          147 PDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDL  196 (210)
Q Consensus       147 ~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl  196 (210)
                      ...+...+.....    .++++++....+...|.++.....  ....++|+||.||
T Consensus       174 ~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~  229 (229)
T cd02540         174 AEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL  229 (229)
T ss_pred             HHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence            7776666654322    124466665666667777776544  4689999999985

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.79  E-value=1.1e-17  Score=127.61  Aligned_cols=168  Identities=18%  Similarity=0.224  Sum_probs=110.5

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||+|++++|+|||+|+++++..++ +++|+||++++.. ...+.+..++..+..... ..+...++..|++.+....+.+
T Consensus        17 ~K~l~~~~g~~li~~~i~~l~~~~-~~~i~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~v   94 (186)
T cd04182          17 NKLLLPLDGKPLLRHALDAALAAG-LSRVIVVLGAEAD-AVRAALAGLPVVVVINPDWEEGMSSSLAAGLEALPADADAV   94 (186)
T ss_pred             CceeCeeCCeeHHHHHHHHHHhCC-CCcEEEECCCcHH-HHHHHhcCCCeEEEeCCChhhCHHHHHHHHHHhccccCCEE
Confidence            799999999999999999999874 8999999988752 333444444433211111 2345788999999885346889


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      +++.||+||++++.++++++.+...+..+ ++|..+.     ..+               .|-+|+...+..+.+..+  
T Consensus        95 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~-v~~~~~g-----~~~---------------~P~~~~~~~~~~l~~~~g--  151 (186)
T cd04182          95 LILLADQPLVTAETLRALIDAFREDGAGI-VAPVYQG-----RRG---------------HPVLFPRSLFPELLALSG--  151 (186)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhCCCeE-EEEecCC-----ccC---------------CCeeECHHHHHHHHccCC--
Confidence            99999999999999999999876543322 2332211     012               466777665544322111  


Q ss_pred             CCCCCcHHHHHHhCCCCeE-EEecCCCCccccChhhHH
Q 028320          161 GLEVTDDVSIVEHLKHPVY-ITEGSYTNIKVTTPDDLL  197 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~-~v~~~~~~~dIdt~~Dl~  197 (210)
                         -.....++...+.... .+......++||||+||+
T Consensus       152 ---~~g~~~~~~~~~~~~~~~~~~~~~~~nint~~d~~  186 (186)
T cd04182         152 ---DKGARSLLRAHPDRVVVEVDDPGVLIDIDTPEDLR  186 (186)
T ss_pred             ---ChhHHHHHHhCcccEEEEeCCCCcccCCCCHHHhC
Confidence               1223455555554432 334445668999999984

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.78  E-value=3.5e-17  Score=130.49  Aligned_cols=197  Identities=15%  Similarity=0.186  Sum_probs=122.6

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCc-cHHHHHHHHHHccc-CCCCE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEVD-FNSEL   79 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~-~~~~si~~~l~~~~-~~~d~   79 (210)
                      +|+|++++|+|||+|+++++.++ .+++|+|+++++   .+.+.+.+++..+.+..+.. ....++..++..+. .+.+.
T Consensus        18 ~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~---~i~~~~~~~~~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~   93 (245)
T PRK05450         18 GKPLADIGGKPMIVRVYERASKA-GADRVVVATDDE---RIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKLGLADDDI   93 (245)
T ss_pred             CCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcH---HHHHHHHHcCCEEEECCCcCCCchHHHHHHHHhcCCCCCCE
Confidence            59999999999999999999988 589999998753   35566666776554432211 11233444554442 23578


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccc------c--e-EEccCCCceeeecCc-----c--------C
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKA------T--I-KEANSESFVVRTLDR-----K--------T  135 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~------~--~-~~~~~~g~v~~~~~r-----~--------~  135 (210)
                      +++++||+||+++++++++++.+...+  .++.+.+..+      +  . ...+++|.+.++...     +        .
T Consensus        94 vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~~~~~~~~  173 (245)
T PRK05450         94 VVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFADSAPT  173 (245)
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCccccccCc
Confidence            999999999999999999999886543  3444444421      1  1 113556666532211     0        0


Q ss_pred             eeeec-CCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecC-CCCccccChhhHHHHHHHh
Q 028320          136 LWEMQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       136 ~~~~~-~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~  203 (210)
                      ..... .-+.|....+..+... ....++.++....  +...|.++..+..+ ..+++||||+||..|++.+
T Consensus       174 ~~~~~~Giy~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~  244 (245)
T PRK05450        174 PVYRHIGIYAYRRGFLRRFVSL-PPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL  244 (245)
T ss_pred             cccEEEEEEecCHHHHHHHHhC-CCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence            11111 2255666655543331 1122223333221  22467788876665 4899999999999999875

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.78  E-value=1.6e-17  Score=131.55  Aligned_cols=175  Identities=21%  Similarity=0.254  Sum_probs=111.1

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHH-HHHHHHHHcccCCCCE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQ-DSVYSGLQEVDFNSEL   79 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~-~si~~~l~~~~~~~d~   79 (210)
                      +|+|++++|+|||+|+++++.+++.+++|+|+++.+.. +.+.+.+.++++  .++.++.... .....+++..  +.+.
T Consensus        15 ~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v--~~v~~~~~~~l~~~~~~~~~~--~~d~   90 (233)
T cd02518          15 GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGV--KVFRGSEEDVLGRYYQAAEEY--NADV   90 (233)
T ss_pred             CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcCC--eEEECCchhHHHHHHHHHHHc--CCCE
Confidence            59999999999999999999988768999999997742 345555555554  3444543322 2222233322  3689


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc-----ccChHHHHHHH
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ-----VIKPDLLKKGF  154 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~-----~f~~~~l~~~~  154 (210)
                      +++++||+||+++++++++++.+...+..+.+...        ..|               .|.     .|....+.++.
T Consensus        91 vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~--------~~g---------------~Pv~~~~~~~~~~~~~~l~  147 (233)
T cd02518          91 VVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTL--------PRT---------------YPDGLDVEVFTRDALERAA  147 (233)
T ss_pred             EEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCC--------CCC---------------CCCceEEEEEEHHHHHHHH
Confidence            99999999999999999999988765443332110        112               243     56655556555


Q ss_pred             HHHHhcCCCCCcH-HHHHHhCCCCeEE--EecCC-----CCccccChhhHHHHHHHhhc
Q 028320          155 ELVNREGLEVTDD-VSIVEHLKHPVYI--TEGSY-----TNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       155 ~~~~~~~~~~~d~-~~~~~~~g~~v~~--v~~~~-----~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      ...++.|.  .+. ...++++...+..  +..+.     ..+|||||+||+.++.+++.
T Consensus       148 ~~~gd~g~--r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~~~~~~  204 (233)
T cd02518         148 AEADDPYE--REHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIKEIYEA  204 (233)
T ss_pred             HhCCChhh--hcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHHHHHHH
Confidence            44332221  000 0123444444443  33332     26899999999999998763

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.77  E-value=1.9e-17  Score=126.70  Aligned_cols=170  Identities=19%  Similarity=0.214  Sum_probs=109.0

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .||+|++++|+|||.|+++++.+++ +++|+||++++....+..++.++++.+..... ..+...|+..|++. ..+.+.
T Consensus        15 ~~K~ll~~~g~pll~~~i~~l~~~~-~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si~~~l~~-~~~~~~   92 (188)
T TIGR03310        15 QNKLLLPYKGKTILEHVVDNALRLF-FDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSIKLGLEL-PVQSDG   92 (188)
T ss_pred             CCceecccCCeeHHHHHHHHHHHcC-CCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHHHHHhcC-CCCCCE
Confidence            3899999999999999999998875 89999999987633233333334433222111 13457889999872 223688


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      +++++||+||++++.++++++.+...+..+ +++....     ..+               .|-+|+...+..+...   
T Consensus        93 vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~-~~~~~~~-----~~~---------------~Pl~~~~~~~~~l~~~---  148 (188)
T TIGR03310        93 YLFLLGDQPFVTPDIIQLLLEAFALKNDEI-VVPLYKG-----KRG---------------HPVLFPRKLFPELLAL---  148 (188)
T ss_pred             EEEEeCCcCCCCHHHHHHHHHHHHhCCCcE-EEeecCC-----ccC---------------CCEEECHHHHHHHHhC---
Confidence            999999999999999999999876554322 2222110     012               3666776665543321   


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhHHH
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLI  198 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl~~  198 (210)
                      .+  -.....++++....+..+..  ....++||||+||+.
T Consensus       149 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~~~  187 (188)
T TIGR03310       149 TG--DTGGRQILRELPHEVKYVEVKDPGILFDIDTPEDYQA  187 (188)
T ss_pred             CC--CccHHHHHHhCcccEEEEEcCCCceeECCCCHHHHhh
Confidence            11  12234455555434444433  345689999999974

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.77  E-value=3.7e-17  Score=141.51  Aligned_cols=200  Identities=15%  Similarity=0.156  Sum_probs=133.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      +||+|+|++|||||+|+++++.+++ +++++|++++.. +.+.+.+..   .+.++..  ..+..+++..+++.++...+
T Consensus        20 ~pK~ll~i~Gkpli~~~l~~l~~~g-i~~iivvv~~~~-~~i~~~~~~---~~~~~~~~~~~g~~~al~~a~~~l~~~~d   94 (458)
T PRK14354         20 LPKVLHKVCGKPMVEHVVDSVKKAG-IDKIVTVVGHGA-EEVKEVLGD---RSEFALQEEQLGTGHAVMQAEEFLADKEG   94 (458)
T ss_pred             CChhhCEeCCccHHHHHHHHHHhCC-CCeEEEEeCCCH-HHHHHHhcC---CcEEEEcCCCCCHHHHHHHHHHHhcccCC
Confidence            5999999999999999999999886 899999988875 445554432   2233222  22347889999998863247


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--e--EEccCCCceeeecCccC-------eeeecC-Ccc
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--I--KEANSESFVVRTLDRKT-------LWEMQT-PQV  144 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~--~--~~~~~~g~v~~~~~r~~-------~~~~~~-P~~  144 (210)
                      .++++++|+||+++++++++++.+.+.++  .+.+.+..++  .  ...+++|.+..+.++..       .+..++ ++.
T Consensus        95 ~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~~~V~~~~ek~~~~~~~~~~~~~~~Giy~  174 (458)
T PRK14354         95 TTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEKQIKEINTGTYC  174 (458)
T ss_pred             eEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCCCCEEEEEECCCCChHHhcCcEEEEEEEE
Confidence            89999999999999999999998866543  2333333333  1  11244566665544321       223343 577


Q ss_pred             cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhHHHHHHHhhc
Q 028320          145 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       145 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      |+.+.|...+.....    .++++++....+...|.++..+..  ....++|||++||+.|+.++..
T Consensus       175 f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~  241 (458)
T PRK14354        175 FDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRR  241 (458)
T ss_pred             EEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHH
Confidence            887766666544321    123445545555556777765543  3578999999999999987653

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.76  E-value=2.7e-17  Score=142.30  Aligned_cols=204  Identities=14%  Similarity=0.173  Sum_probs=132.2

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~   79 (210)
                      .||+|++++|||||+|+++++...+ +++|+|++++.. +.+.+.+.+.+..+.......+...++..+++.++. +.+.
T Consensus        23 ~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~  100 (456)
T PRK14356         23 KPKVLQTLLGEPMLRFVYRALRPLF-GDNVWTVVGHRA-DMVRAAFPDEDARFVLQEQQLGTGHALQCAWPSLTAAGLDR  100 (456)
T ss_pred             CCceecccCCCcHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHhccccCceEEEcCCCCCcHHHHHHHHHHHhhcCCCc
Confidence            4999999999999999999998875 789999998875 445555443332222212222346789999988853 3578


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceE--E-ccCCCceeeecCccCee---------eec-CCcccC
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK--E-ANSESFVVRTLDRKTLW---------EMQ-TPQVIK  146 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~g~v~~~~~r~~~~---------~~~-~P~~f~  146 (210)
                      ++++.||+||+++++++.+++.....++++...++.++..  . ..++|.+.++.++....         ... .-+.|+
T Consensus       101 vlv~~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~~~~~~g~v~~~~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~  180 (456)
T PRK14356        101 VLVVNGDTPLVTTDTIDDFLKEAAGADLAFMTLTLPDPGAYGRVVRRNGHVAAIVEAKDYDEALHGPETGEVNAGIYYLR  180 (456)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEcCCeEEEEEECCCCChHHhhhhcCeEEEEEEEEE
Confidence            9999999999999999999987664445555555554421  1 12356666554432211         000 013355


Q ss_pred             hHHHHHHHHHHH----hcCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320          147 PDLLKKGFELVN----REGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       147 ~~~l~~~~~~~~----~~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      ...+..++....    ..++++++....+...|.++......  ..+++||||+||..++.++..+
T Consensus       181 ~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~  246 (456)
T PRK14356        181 LDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRAR  246 (456)
T ss_pred             HHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHH
Confidence            554444333221    12245565555555677777766543  3579999999999999998754

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=99.76  E-value=1.1e-16  Score=123.38  Aligned_cols=168  Identities=15%  Similarity=0.146  Sum_probs=106.8

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d   78 (210)
                      .||+|++++|+|||+|+++.+.  ..+++|+|+++.+. ..    ...++..+..-  .+..+...|+..|++..+  .+
T Consensus        20 ~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~----~~~~~~~~v~~~~~~~~g~~~~i~~~l~~~~--~~   90 (193)
T PRK00317         20 VDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-AR----YAAFGLPVIPDSLADFPGPLAGILAGLKQAR--TE   90 (193)
T ss_pred             CCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HH----HHhcCCcEEeCCCCCCCCCHHHHHHHHHhcC--CC
Confidence            3899999999999999999998  35899999987653 21    22344333211  122445788999998754  68


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFEL  156 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~  156 (210)
                      .+++++||+||++++.++.+++.+...+..+.+ +..        ++..             .|-  .|+...+..+...
T Consensus        91 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~-~~~--------~~~~-------------~Pl~~~~~~~~~~~l~~~  148 (193)
T PRK00317         91 WVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW-AHD--------GGRL-------------HPTFALYSVALLPDLEAY  148 (193)
T ss_pred             eEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE-Eee--------CCcc-------------eeEEEEEeHHHHHHHHHH
Confidence            999999999999999999999976544333222 111        1111             354  5666555543322


Q ss_pred             HHhcCCCCCcHHHHHHhCCCCeEEEe-cCCCCccccChhhHHHHHHH
Q 028320          157 VNREGLEVTDDVSIVEHLKHPVYITE-GSYTNIKVTTPDDLLIAERI  202 (210)
Q Consensus       157 ~~~~~~~~~d~~~~~~~~g~~v~~v~-~~~~~~dIdt~~Dl~~a~~~  202 (210)
                      . ..|  -..-..+++..+.....+. .+...+|||||+||+.+++.
T Consensus       149 l-~~g--~~~~~~~l~~~~~~~v~~~~~~~~~~dinTped~~~~~~~  192 (193)
T PRK00317        149 L-AAG--ERKVMAFYARHGGVAVDFSDPKDAFFNINTPEDLAQLEEL  192 (193)
T ss_pred             H-HcC--CchHHHHHHHCCcEEEeCCCCCCccCcCCCHHHHHHHHhh
Confidence            1 112  0123345555553222233 23456899999999998764

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.76  E-value=4.4e-17  Score=140.63  Aligned_cols=204  Identities=15%  Similarity=0.131  Sum_probs=133.0

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      .||+|++++|||||+|+++++..++ +++++|++++.. +.+.+.+.+++..+.+...  ..+..+++..++..++...+
T Consensus        23 ~pK~ll~v~gkpli~~~l~~l~~~g-i~~ivvv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~  100 (446)
T PRK14353         23 LPKVLHPVAGRPMLAHVLAAAASLG-PSRVAVVVGPGA-EAVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAGGYG  100 (446)
T ss_pred             CCcccCEECCchHHHHHHHHHHhCC-CCcEEEEECCCH-HHHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHHhccCC
Confidence            4999999999999999999999886 899999999876 5566666555433332222  22347888889888753246


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEeeecccceEE---ccCCCceeeecCccCe-------eeecC-CcccC
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKE---ANSESFVVRTLDRKTL-------WEMQT-PQVIK  146 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~---~~~~g~v~~~~~r~~~-------~~~~~-P~~f~  146 (210)
                      .+++++||+||++++.++.+++.... .++++.+.+..++..+   ..++|.+..+.++...       ....+ =+.|+
T Consensus       101 ~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~  180 (446)
T PRK14353        101 DVLVLYGDTPLITAETLARLRERLADGADVVVLGFRAADPTGYGRLIVKGGRLVAIVEEKDASDEERAITLCNSGVMAAD  180 (446)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEEEEEeCCCCcceEEEECCCeEEEEEECCCCChHHhhceEEEEEEEEEE
Confidence            67889999999999999999985543 2345555565543211   1134556544321100       00001 13344


Q ss_pred             hHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhhcc
Q 028320          147 PDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       147 ~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      ...|..+++....    .++++++....+...|.++..+..+. .+.+||||+||..|+.+++.+
T Consensus       181 ~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~  245 (446)
T PRK14353        181 GADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQAR  245 (446)
T ss_pred             HHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHH
Confidence            4455555544321    22455666666667888888877653 467999999999999877643

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=99.75  E-value=7.7e-17  Score=123.85  Aligned_cols=168  Identities=15%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChH--HHHHHH-hhcCCcEEEecCC-ccHHHHHHHHHHccc-CC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD--IFEETK-EKINVDLKFSLPG-KERQDSVYSGLQEVD-FN   76 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~--~i~~~~-~~~~~~v~~~~~~-~~~~~si~~~l~~~~-~~   76 (210)
                      ||+|++++|+|||+|+++.+.+.. +++|+||++++...  .+.+.. ...+..+....+. .++.+|+..|++++. .+
T Consensus        17 ~K~ll~~~g~~ll~~~i~~~~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~   95 (190)
T TIGR03202        17 NKLALPLGETTLGSASLKTALSSR-LSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQAHSLKCGLRKAEAMG   95 (190)
T ss_pred             CceeceeCCccHHHHHHHHHHhCC-CCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhHHHHHHHHHHHhccCC
Confidence            799999999999999999887774 89999999887521  111111 1122233333332 245889999999874 24


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHH
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL  156 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~  156 (210)
                      .++++++.||+||+++++++++++.+......+. ++..+     +..|               .|-+|+...+..+...
T Consensus        96 ~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~-~~~~~-----g~~~---------------~p~~~~~~~~~~l~~~  154 (190)
T TIGR03202        96 ADAVVILLADQPFLTADVINALLALAKRRPDDYV-AASFK-----GKPR---------------PPILFSKSLFPKLKAL  154 (190)
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEE-EEecC-----CCCC---------------CCeEEcHHHHHHHHhC
Confidence            6899999999999999999999998765443222 22211     1112               4667777665543321


Q ss_pred             HHhcCCCCCcHHHHHHhCCCCe-EEEecCCCCccccChhhH
Q 028320          157 VNREGLEVTDDVSIVEHLKHPV-YITEGSYTNIKVTTPDDL  196 (210)
Q Consensus       157 ~~~~~~~~~d~~~~~~~~g~~v-~~v~~~~~~~dIdt~~Dl  196 (210)
                      .++     .+...++++.+... ..+......+|||||+||
T Consensus       155 ~~~-----~g~~~~l~~~~~~~~~~~~~~~~~~dint~ed~  190 (190)
T TIGR03202       155 KGD-----EGARALLRKDKSGLALPVADASAFFDIDTKEDY  190 (190)
T ss_pred             CCC-----ccHHHHHhhCCcceEEecCCCccccCCCChhhC
Confidence            111     23455665554322 223434456899999996

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=99.75  E-value=1.5e-16  Score=121.71  Aligned_cols=165  Identities=12%  Similarity=0.072  Sum_probs=104.0

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE--ecCCccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~--~~~~~~~~~si~~~l~~~~~~~d   78 (210)
                      .||+|++++|+|||.|+++++..  .+++|+|+++++...   .....++..+..  ..++.++.+|+..|++.++  .+
T Consensus        17 ~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~---~~~~~~~~~~i~~~~~~~~g~~~si~~al~~~~--~~   89 (186)
T TIGR02665        17 RDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPER---YAQAGFGLPVVPDALADFPGPLAGILAGLRWAG--TD   89 (186)
T ss_pred             CCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHH---HhhccCCCcEEecCCCCCCCCHHHHHHHHHhcC--CC
Confidence            38999999999999999999974  489999998765421   111223333322  1334567899999999885  57


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFEL  156 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~  156 (210)
                      .+++++||+||++++.++.+++.+...++.+.+ +..+      ..+               .|-  .|+...+..+.+.
T Consensus        90 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~-~~~~------~~~---------------~P~~~~~~~~~~~~l~~~  147 (186)
T TIGR02665        90 WVLTVPCDTPFLPEDLVARLAAALEASDADIAV-AHDG------GRW---------------HPVFALWPVALAPDLEAF  147 (186)
T ss_pred             eEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE-EecC------Ccc---------------cCEEEEEhHHHHHHHHHH
Confidence            899999999999999999999987654443322 2211      012               354  5666554443322


Q ss_pred             HHhcCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHH
Q 028320          157 VNREGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLL  197 (210)
Q Consensus       157 ~~~~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~  197 (210)
                      . .+|-  ..-..++++.+.....+... ...+|||||+||+
T Consensus       148 ~-~~g~--~~~~~~l~~~~~~~i~~~~~~~~~~nint~~d~~  186 (186)
T TIGR02665       148 L-AAGE--RRVRRFYARHGAVAVDFSDSPDAFANLNTPEDLA  186 (186)
T ss_pred             H-HcCC--chHHHHHHHCCcEEEeCCCCCcccCCCCCHHHhC
Confidence            1 1221  12233344444222223333 3458999999984

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=7.8e-17  Score=138.43  Aligned_cols=197  Identities=15%  Similarity=0.169  Sum_probs=127.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC----ccHHHHHHHHHHcccCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG----KERQDSVYSGLQEVDFN   76 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~----~~~~~si~~~l~~~~~~   76 (210)
                      +||+|+|++|+|||+|+++++.++  +++|+|+++++. +.+.+.+.++...+.++...    .+..+++..    +...
T Consensus        20 ~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~----~~~~   92 (430)
T PRK14359         20 LPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQK-ERIKEAVLEYFPGVIFHTQDLENYPGTGGALMG----IEPK   92 (430)
T ss_pred             CCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCH-HHHHHHHHhcCCceEEEEecCccCCCcHHHHhh----cccC
Confidence            599999999999999999999875  588999998875 56667666553334444221    112444443    3223


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceE--Ec-cCCCceeeecCccCe-------eeec-CCccc
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK--EA-NSESFVVRTLDRKTL-------WEMQ-TPQVI  145 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~--~~-~~~g~v~~~~~r~~~-------~~~~-~P~~f  145 (210)
                      .|.+++++||+||++++.++++++.  ..+..+++.++.++..  .+ .++|.+..+.++...       .... ..+.|
T Consensus        93 ~d~vlv~~gD~p~~~~~~l~~l~~~--~~~~~v~~~~~~~~~~~g~v~~d~g~v~~i~e~~~~~~~~~~~~~~~~Giyif  170 (430)
T PRK14359         93 HERVLILNGDMPLVEKDELEKLLEN--DADIVMSVFHLADPKGYGRVVIENGQVKKIVEQKDANEEELKIKSVNAGVYLF  170 (430)
T ss_pred             CCeEEEEECCccCCCHHHHHHHHhC--CCCEEEEEEEcCCCccCcEEEEcCCeEEEEEECCCCCcccccceEEEeEEEEE
Confidence            5789999999999999999887742  2233455555544421  11 135666554432211       1111 23667


Q ss_pred             ChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhhcc
Q 028320          146 KPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       146 ~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      +...|..+......    .+++++|....+...|.++..+..+ ..+.|||||+||..|+.++..+
T Consensus       171 ~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~  236 (430)
T PRK14359        171 DRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQER  236 (430)
T ss_pred             EHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHH
Confidence            77776655443221    2356777766666778888776654 4678999999999999988754

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.74  E-value=2e-16  Score=136.57  Aligned_cols=202  Identities=16%  Similarity=0.141  Sum_probs=134.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      +||+|++++|+|||+|+++++.+++ +++++|+++++. +.+.+.+.+++..+.......+..+++++++..++. .+.+
T Consensus        18 ~pK~l~~i~gkpli~~~l~~l~~~g-~~~iiiv~~~~~-~~i~~~~~~~~i~~~~~~~~~G~~~ai~~a~~~l~~-~~~~   94 (451)
T TIGR01173        18 LPKVLHPLAGKPMLEHVIDAARALG-PQKIHVVYGHGA-EQVRKALANRDVNWVLQAEQLGTGHAVLQALPFLPD-DGDV   94 (451)
T ss_pred             CchhhceeCCccHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhcCCCcEEEEcCCCCchHHHHHHHHHhcCC-CCcE
Confidence            5999999999999999999999986 799999998875 556776666554332211112347889999999853 3678


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc--e--EEccCCCceeeecCccCe-------eeec-CCcccChH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT--I--KEANSESFVVRTLDRKTL-------WEMQ-TPQVIKPD  148 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~--~--~~~~~~g~v~~~~~r~~~-------~~~~-~P~~f~~~  148 (210)
                      +++.||+||+++++++++++.+...+.++.+.+..++  +  ...+++|.+..+.++...       .... ..+.|+..
T Consensus        95 lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~  174 (451)
T TIGR01173        95 LVLYGDVPLISAETLERLLEAHRQNGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDGA  174 (451)
T ss_pred             EEEECCcCCcCHHHHHHHHHHHhhCCEEEEEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHH
Confidence            8899999999999999999888665554555555333  1  123445666655443211       1111 23667766


Q ss_pred             HHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhc
Q 028320          149 LLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       149 ~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      .|...+.....    .++++++....+...|.++...+.+  ..+++++||+|+..++.++..
T Consensus       175 ~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~  237 (451)
T TIGR01173       175 ALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQR  237 (451)
T ss_pred             HHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHH
Confidence            66555543211    1233444444444567777766543  358999999999998877654

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=8.6e-17  Score=138.95  Aligned_cols=200  Identities=14%  Similarity=0.112  Sum_probs=132.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      +||+|+|++|+|||+|+++++.+++ +++++|++++.. +.+.+.+++++ .+.++..  ..+..+++..+++.++...+
T Consensus        19 ~pK~ll~v~gkpli~~~l~~l~~~g-~~~iivvv~~~~-~~i~~~~~~~~-~i~~v~~~~~~G~~~sv~~~~~~l~~~~~   95 (450)
T PRK14360         19 LPKVLHPLGGKSLVERVLDSCEELK-PDRRLVIVGHQA-EEVEQSLAHLP-GLEFVEQQPQLGTGHAVQQLLPVLKGFEG   95 (450)
T ss_pred             CChhcCEECChhHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhcccC-CeEEEEeCCcCCcHHHHHHHHHHhhccCC
Confidence            4999999999999999999999886 788888888765 45666665433 2344422  12236888889888863335


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEE--eeecccce----EEccCCCceeeecCccCeeeec--------CCcc
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVL--GVPAKATI----KEANSESFVVRTLDRKTLWEMQ--------TPQV  144 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~--~~~~~~~~----~~~~~~g~v~~~~~r~~~~~~~--------~P~~  144 (210)
                      .++++++|+||++++.++++++.+...++.++  ..+..++.    ...+++|.+.++.++..+...+        ..+.
T Consensus        96 ~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~  175 (450)
T PRK14360         96 DLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQRQNNRINAGIYC  175 (450)
T ss_pred             cEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCCCCEEEEEECCCCChhHhcCcEEEEEEEE
Confidence            67889999999999999999998877665332  23333332    1235567776665543222111        2477


Q ss_pred             cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          145 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       145 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      |+...|.+++.....    .+++++|....+...  .-..+.+.....+|||++|++.++.++..
T Consensus       176 f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~~--~~~~v~~~~~~~~i~~~~dl~~~~~~l~~  238 (450)
T PRK14360        176 FNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPV--MAVEVEDYQEINGINDRKQLAQCEEILQN  238 (450)
T ss_pred             EEHHHHHHHHhhccccccCCceeHHHHHHHHhhc--eEEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence            887777776654322    124566654444321  01114445577999999999999998764

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.73  E-value=3.5e-16  Score=119.15  Aligned_cols=92  Identities=18%  Similarity=0.290  Sum_probs=73.7

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||++++++|+|||+|+++++.++  +++|+|+++++...     ...++..+..-. .+.+...|+..|++.++  .+.+
T Consensus        17 ~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~-----~~~~~~~~v~~~~~~~G~~~si~~~l~~~~--~~~v   87 (181)
T cd02503          17 DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER-----YALLGVPVIPDEPPGKGPLAGILAALRAAP--ADWV   87 (181)
T ss_pred             CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH-----HhhcCCcEeeCCCCCCCCHHHHHHHHHhcC--CCeE
Confidence            79999999999999999999875  79999999987521     233443332211 23455899999999885  6889


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDA  102 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~  102 (210)
                      +++.||+||++++.++.+++.+
T Consensus        88 lv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          88 LVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             EEEeCCcCCCCHHHHHHHHHhh
Confidence            9999999999999999999887

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.71  E-value=5.1e-16  Score=135.25  Aligned_cols=194  Identities=14%  Similarity=0.178  Sum_probs=132.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccC-CC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDF-NS   77 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~-~~   77 (210)
                      .||+|+|++|+|||+|+++++.+++ +++++|++++.. +.+.+.+.+++..+.++..  ..+..++++.|++.+.. ..
T Consensus        22 ~pK~llpi~gkpli~~~l~~l~~~g-~~~iivvv~~~~-~~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l~~~~~   99 (482)
T PRK14352         22 TPKVLHTLAGRSMLGHVLHAAAGLA-PQHLVVVVGHDR-ERVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEALPADFD   99 (482)
T ss_pred             CCceeceeCCccHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHhccCCC
Confidence            4899999999999999999999885 789999998875 4566655544323333322  12336889999998853 24


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE--Eeeecccce----EEccCCCceeeecCccC-------eeeecC-Cc
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQT-PQ  143 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~--~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~-P~  143 (210)
                      +.++++.||+||+++++++++++.+...++.+  ...++.++.    ...+++|.+.+++++..       ....++ ++
T Consensus       100 ~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~g~V~~~~EKp~~~~~~~~~~~~~~Giy  179 (482)
T PRK14352        100 GTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVNSGVY  179 (482)
T ss_pred             CeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCCCCEEEEEECCCCCHHHhhcceEEEEEE
Confidence            67899999999999999999999887666543  333444432    11244677776655322       122333 78


Q ss_pred             ccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhH
Q 028320          144 VIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDL  196 (210)
Q Consensus       144 ~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl  196 (210)
                      .|+...|..++.....    .+++++|....+...|.++...+.+..+.++.+++++
T Consensus       180 ~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~  236 (482)
T PRK14352        180 AFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV  236 (482)
T ss_pred             EEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence            8888877776654332    2245677666666777778776666677888777776

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.71  E-value=1.4e-15  Score=117.85  Aligned_cols=168  Identities=14%  Similarity=0.135  Sum_probs=105.5

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC---CccHHHHHHHHHHcccCCCC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~---~~~~~~si~~~l~~~~~~~d   78 (210)
                      +|+|++++|+|||+|+++++...  +++|+|++++.+  ....... .+  +.++.+   +.+..+|+..|+..++  .+
T Consensus        24 ~K~ll~~~g~~ll~~~i~~l~~~--~~~ivvv~~~~~--~~~~~~~-~~--~~~i~~~~~~~G~~~si~~~l~~~~--~~   94 (200)
T PRK02726         24 DKALLPWQGVPLLQRVARIAAAC--ADEVYIITPWPE--RYQSLLP-PG--CHWLREPPPSQGPLVAFAQGLPQIK--TE   94 (200)
T ss_pred             CceeeEECCEeHHHHHHHHHHhh--CCEEEEECCCHH--HHHhhcc-CC--CeEecCCCCCCChHHHHHHHHHhCC--CC
Confidence            79999999999999999999753  689999887542  2222221 12  334322   2455889999999886  47


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhc-CCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFE  155 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~  155 (210)
                      +++++.||+||+++++|+++++.+... +....+.+..+.      .+               .|-  +|++..+..+..
T Consensus        95 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~------~~---------------~Pl~~~~~~~~~~~l~~  153 (200)
T PRK02726         95 WVLLLACDLPRLTVDVLQEWLQQLENVPEEAIAALPKQEK------GW---------------EPLCGFYRRRCLPSLEQ  153 (200)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhcCCCCceEEEecCCC------Cc---------------ccEEeeecHHHHHHHHH
Confidence            899999999999999999999987542 233333332211      11               342  256555444333


Q ss_pred             HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHH
Q 028320          156 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERI  202 (210)
Q Consensus       156 ~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~  202 (210)
                      . ..+|.  ..-..+++..+.....+......++||||+||+.+..+
T Consensus       154 ~-~~~g~--~~l~~~l~~~~~~~v~~~~~~~~~ninTped~~~~~~~  197 (200)
T PRK02726        154 F-IQQGG--RSFQGWLAQVPVQELALSDPDMLFNCNTPEDLATIQGI  197 (200)
T ss_pred             H-HHhCC--ccHHHHHhhCCceEecCCCchhhccCCCHHHHHHHhhc
Confidence            2 22221  11223344443222222333456799999999987764

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.67  E-value=5.1e-15  Score=128.27  Aligned_cols=202  Identities=19%  Similarity=0.179  Sum_probs=130.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC--ccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~--~~~~~si~~~l~~~~~~~d   78 (210)
                      .||+|+|++|+|||+|+++++.+++ ++++++++++.. +.+.+.+.+.+ .+.++...  .+..+++..+++.++...+
T Consensus        21 ~pK~l~pi~g~pli~~~l~~l~~~g-i~~iiiv~~~~~-~~i~~~~~~~~-~i~~~~~~~~~Gt~~al~~a~~~l~~~~~   97 (459)
T PRK14355         21 LVKVMHPLAGRPMVSWPVAAAREAG-AGRIVLVVGHQA-EKVREHFAGDG-DVSFALQEEQLGTGHAVACAAPALDGFSG   97 (459)
T ss_pred             CCceeceeCCccHHHHHHHHHHhcC-CCeEEEEECCCH-HHHHHHhccCC-ceEEEecCCCCCHHHHHHHHHHHhhccCC
Confidence            4899999999999999999999986 899999999875 44555554422 34443321  2346789999998864357


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEee--ecccce----EEccCCCceeeecCccC-------eeeecC-Ccc
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV--PAKATI----KEANSESFVVRTLDRKT-------LWEMQT-PQV  144 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~--~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~-P~~  144 (210)
                      .++++++|+||+++++++++++.+...++.+++.  +..++.    ...+++|.+..+.+...       .....+ -+.
T Consensus        98 ~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~  177 (459)
T PRK14355         98 TVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNSGIYC  177 (459)
T ss_pred             cEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCCCCEEEEEEcCCCChhHhhccEEEEEEEE
Confidence            8999999999999999999999887665543332  332331    12244566654432110       011111 244


Q ss_pred             cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC--CCccccChhhHHHHHHHhhc
Q 028320          145 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       145 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~--~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      |....+...+.....    .+++++|....+...|.++...+.+.  .+++|+||+||..+..++..
T Consensus       178 ~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~  244 (459)
T PRK14355        178 VEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRR  244 (459)
T ss_pred             EeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHH
Confidence            555544444433211    22445555555555677777655443  48899999999999877664

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.67  E-value=3.5e-15  Score=117.34  Aligned_cols=199  Identities=18%  Similarity=0.224  Sum_probs=142.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCCcc--HHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPGKE--RQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~~~--~~~si~~~l~~~~~   75 (210)
                      .||+|+|+.+||||.|.++++..++ +++|.|+++++....++++..+   +|+++.++.+.+.  ..+++..|-+++. 
T Consensus        21 ~~KqLlpV~~KPmi~y~l~~L~~aG-I~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~-   98 (286)
T COG1209          21 VPKQLLPVYDKPMIYYPLETLMLAG-IRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVG-   98 (286)
T ss_pred             CCcccceecCcchhHhHHHHHHHcC-CceEEEEecCCchhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhcC-
Confidence            4899999999999999999999997 9999999999766677776643   5778888776443  3677777777775 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccc----eEEccCCCceeeec-----CccCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKAT----IKEANSESFVVRTL-----DRKTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~~----~~~~~~~g~v~~~~-----~r~~~~~~~~P~~  144 (210)
                       .+-+++..||.=|-.  .+.++++.+.+  .++.+...++.||    +...+++|++..++     ++|++... .=+.
T Consensus        99 -~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P~SNlAvt-GlY~  174 (286)
T COG1209          99 -DDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVT-GLYF  174 (286)
T ss_pred             -CCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCCcEEEeEECCCCCCCceeEE-EEEE
Confidence             344566669988877  88888887765  5778888888887    33345566665543     34554321 1133


Q ss_pred             cChHHHHHH--HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          145 IKPDLLKKG--FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       145 f~~~~l~~~--~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      |+..-+..+  ++...+.++++||....+-..|.++..++...-++|+.|++||..|..++..
T Consensus       175 ~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~  237 (286)
T COG1209         175 YDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT  237 (286)
T ss_pred             eChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence            333222211  1112223478999888888889888877776678999999999999998764

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.66  E-value=2.4e-15  Score=110.95  Aligned_cols=95  Identities=18%  Similarity=0.243  Sum_probs=82.5

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl   81 (210)
                      -|+|++++|||||.|+++++.+  .+++|+|++++.. ..+++.+...++++...+ |.+....+..+++.+.   ..++
T Consensus        18 EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~t-p~t~~~~~~~gv~vi~tp-G~GYv~Dl~~al~~l~---~P~l   90 (177)
T COG2266          18 EKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHT-PKTKEYLESVGVKVIETP-GEGYVEDLRFALESLG---TPIL   90 (177)
T ss_pred             cCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCC-HhHHHHHHhcCceEEEcC-CCChHHHHHHHHHhcC---CceE
Confidence            4999999999999999999987  4899999999986 678888888776654444 4677889999999986   3789


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHH
Q 028320           82 IHDSARPLVLSKDVQKVLMDAL  103 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~  103 (210)
                      ++.+|.||+++.+|+.+++.+.
T Consensus        91 vvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          91 VVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             EEecccccCCHHHHHHHHHHHh
Confidence            9999999999999999999886

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=99.65  E-value=9.1e-15  Score=123.06  Aligned_cols=170  Identities=16%  Similarity=0.179  Sum_probs=107.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++..  .+++|+|++..+. ..+...+.+.........++.+...|+..|++.++  .+.+
T Consensus        22 ~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G~~~si~~gl~~~~--~~~v   96 (366)
T PRK14489         22 RDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQGPLSGILAGLEHAD--SEYL   96 (366)
T ss_pred             CCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCChHHHHHHHHHhcC--CCcE
Confidence            38999999999999999999974  3899998776554 22333221111111123343567899999999875  5789


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHHHH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFELVN  158 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~~~  158 (210)
                      +++.||+||+++++++++++.+...++.+ ++|..+      ..|               .|-  +|++..+..+.. ..
T Consensus        97 lv~~~D~P~i~~~~i~~L~~~~~~~~~~~-v~~~~g------~~g---------------~Pl~aiy~~~~~~~l~~-~l  153 (366)
T PRK14489         97 FVVACDTPFLPENLVKRLSKALAIEGADI-AVPHDG------ERA---------------HPLFALYHRSCLPALRR-YL  153 (366)
T ss_pred             EEeeCCcCCCCHHHHHHHHHHhhccCCeE-EEEecC------CCc---------------eeeEEEEcHHHHHHHHH-HH
Confidence            99999999999999999999876544432 223211      112               354  576665554433 33


Q ss_pred             hcCCCCCcHHHHHHhC-CCCeEEEec--C-CCCccccChhhHHHHHHHh
Q 028320          159 REGLEVTDDVSIVEHL-KHPVYITEG--S-YTNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       159 ~~~~~~~d~~~~~~~~-g~~v~~v~~--~-~~~~dIdt~~Dl~~a~~~~  203 (210)
                      ..|.     ..+.... ...+..+..  . ...++||||+||+.++...
T Consensus       154 ~~G~-----~~l~~~l~~~~~~~v~~~~~~~~~~nINTpeDl~~l~~~~  197 (366)
T PRK14489        154 AEGE-----RRLFDFFQRQRVRYVDLSTQKDAFFNVNTPEDLEQLRAIP  197 (366)
T ss_pred             HhCC-----ccHHHHHHhCCcEEEeccCCccccccCCCHHHHHHHhhhh
Confidence            3331     2333221 122333332  2 3457999999999998874

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=3.1e-14  Score=108.55  Aligned_cols=177  Identities=18%  Similarity=0.204  Sum_probs=116.3

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccH-HHHHHHHHHcccCCCCE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~-~~si~~~l~~~~~~~d~   79 (210)
                      .|.|+|++|+|||.++++++++++.+++|||+|++.+. +.+++.|.++|..  +..|..+. ..-...++++.+  .+.
T Consensus        19 gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~--vfrGs~~dVL~Rf~~a~~a~~--~~~   94 (241)
T COG1861          19 GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFY--VFRGSEEDVLQRFIIAIKAYS--ADV   94 (241)
T ss_pred             cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCee--EecCCHHHHHHHHHHHHHhcC--CCe
Confidence            49999999999999999999999999999999999865 5778888888843  46665433 444455666654  578


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      |+-+.||.||++++.++.+++.+-+.|+-.+..... +      -|.              .-+.+....|..+-+... 
T Consensus        95 VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~~~~-p------~G~--------------~vEV~~a~~L~~a~k~~~-  152 (241)
T COG1861          95 VVRVTGDNPFLDPELVDAAVDRHLEKGADYVSNTGA-P------LGT--------------DVEVMKARALKKAAKEAL-  152 (241)
T ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHhcCCccccccCC-c------ccc--------------ceeeeehHHHHHhHhhcc-
Confidence            999999999999999999999987776533211000 1      110              124455444443222110 


Q ss_pred             cCCCCCcHHHH-HHhCC--CCeEEEecC------CCCccccChhhHHHHHHHhhc
Q 028320          160 EGLEVTDDVSI-VEHLK--HPVYITEGS------YTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       160 ~~~~~~d~~~~-~~~~g--~~v~~v~~~------~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                       ..|..+.... +.+..  .++.+++.+      ...+.|||++||++++++++.
T Consensus       153 -e~~~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD~~~~~~vye~  206 (241)
T COG1861         153 -EAYYREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQEDFALAKAVYEY  206 (241)
T ss_pred             -chhhhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHHHHHHHHHHHH
Confidence             0111111222 22222  244455332      245889999999999998763

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.61  E-value=3.5e-14  Score=111.16  Aligned_cols=187  Identities=14%  Similarity=0.168  Sum_probs=113.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+.+   ++..+.+..+  ..+..+++..|++.+. 
T Consensus        19 ~pK~ll~i~g~pli~~~l~~l~~~g-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~-   95 (223)
T cd06915          19 LPKPLAPVAGRPFLEYLLEYLARQG-ISRIVLSVGYLA-EQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP-   95 (223)
T ss_pred             CCccccEECCcchHHHHHHHHHHCC-CCEEEEEcccCH-HHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcC-
Confidence            4899999999999999999999886 899999998764 455555553   2334434332  2334678999998884 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccCCCceeeecCc-----cCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~P~~  144 (210)
                       .+.++++.||+|+  +..+.++++.+...++  ++.+.+..+.    ....+++|.+..+.+.     +... .-.-+.
T Consensus        96 -~~~~lv~~~D~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~-~~Giy~  171 (223)
T cd06915          96 -EDQFLVLNGDTYF--DVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLI-NGGVYL  171 (223)
T ss_pred             -CCCEEEEECCccc--CCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCCCeEEEEEeCCCCCCCCcE-EEEEEE
Confidence             4668889999987  4568888887765443  4444444321    1223445565543321     1111 111244


Q ss_pred             cChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320          145 IKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA  199 (210)
Q Consensus       145 f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a  199 (210)
                      |+...|... .   ..+. ..++-...+...| ++.....+..++||||++||..|
T Consensus       172 ~~~~~l~~~-~---~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~dI~t~~dl~~a  222 (223)
T cd06915         172 LRKEILAEI-P---ADAFSLEADVLPALVKRG-RLYGFEVDGYFIDIGIPEDYARA  222 (223)
T ss_pred             ECHHHHhhC-C---ccCCChHHHHHHHHHhcC-cEEEEecCCeEEecCCHHHHHhh
Confidence            555443321 1   1111 1111111122344 77766555678999999999887

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.60  E-value=3.2e-14  Score=123.94  Aligned_cols=201  Identities=15%  Similarity=0.166  Sum_probs=126.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      +||+|+|++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+++.+  +.++.+  ..+..++++.|++.+....+
T Consensus        25 ~pK~llpi~gkpli~~~l~~l~~~g-i~~ivvv~~~~~-~~i~~~~~~~~--i~~v~~~~~~Gt~~al~~~~~~l~~~~~  100 (481)
T PRK14358         25 LPKVLHPVAGRPMVAWAVKAARDLG-ARKIVVVTGHGA-EQVEAALQGSG--VAFARQEQQLGTGDAFLSGASALTEGDA  100 (481)
T ss_pred             CCceecEECCeeHHHHHHHHHHhCC-CCeEEEEeCCCH-HHHHHHhccCC--cEEecCCCcCCcHHHHHHHHHHhhCCCC
Confidence            4999999999999999999999885 899999999865 45666655444  344433  22347889999988853223


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE--Eeeecccc----eEEccCCCceeeecCccC-------eeeecC-Ccc
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKAT----IKEANSESFVVRTLDRKT-------LWEMQT-PQV  144 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~--~~~~~~~~----~~~~~~~g~v~~~~~r~~-------~~~~~~-P~~  144 (210)
                      .++++.||+||+++.+++++++.+...++.+  ...++.++    ....+++|.+.++.+...       .....+ -+.
T Consensus       101 ~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi  180 (481)
T PRK14358        101 DILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNSGVYV  180 (481)
T ss_pred             cEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCCCCEEEEEECCCCChhHhhCCeEEEEEEE
Confidence            3778999999999999999999887766543  23333332    112344566665443110       001111 244


Q ss_pred             cChHHHHHHHHHHH---h-cCCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhHHHHHHHhhcc
Q 028320          145 IKPDLLKKGFELVN---R-EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       145 f~~~~l~~~~~~~~---~-~~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      |..+. ..++....   . .+++++|....+...|.++.....  ....++++++.++..++.+++.+
T Consensus       181 ~~~~~-~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~  247 (481)
T PRK14358        181 FDARA-PELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRR  247 (481)
T ss_pred             EchHH-HHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence            55332 22232221   1 124566554455556666654333  35778899999888887666644

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=99.60  E-value=9.6e-14  Score=117.06  Aligned_cols=174  Identities=10%  Similarity=0.041  Sum_probs=103.8

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||+|++++|+|||+|+++++...  +++|+|++.++...    ....+++.+..-. .+.+...++..|++..+  .+.+
T Consensus       191 ~K~ll~~~Gk~ll~~~l~~l~~~--~~~vvV~~~~~~~~----~~~~~~v~~i~d~~~~~Gpl~gi~~al~~~~--~~~~  262 (369)
T PRK14490        191 DKALLSYHESNQLVHTAALLRPH--CQEVFISCRAEQAE----QYRSFGIPLITDSYLDIGPLGGLLSAQRHHP--DAAW  262 (369)
T ss_pred             CcEEEEECCccHHHHHHHHHHhh--CCEEEEEeCCchhh----HHhhcCCcEEeCCCCCCCcHHHHHHHHHhCC--CCcE
Confidence            79999999999999999999753  78999988766421    1223444332211 13445788888988764  4678


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      +++.|||||+++++++.++........+.+..        ...+|...-           ....|+...+..+..... .
T Consensus       263 lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~~~--------~~~~g~p~p-----------l~~~y~~~~~~~l~~~~~-~  322 (369)
T PRK14490        263 LVVACDLPFLDEATLQQLVEGRNPFRFATAFR--------HPDSGRPEP-----------LCAIYEPKSRLRLLLRHA-A  322 (369)
T ss_pred             EEEeCCcCCCCHHHHHHHHHhccCCCceEEEE--------cCCCCceEe-----------EEEeecHHHHHHHHHHHH-h
Confidence            89999999999999999998643222222111        011231100           002233333333322111 1


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhHHHHHHHhhccc
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      |  -.....+++..+  +..+..  ....+|||||+||+.++++++.-+
T Consensus       323 g--d~~~~~~l~~~~--~~~v~~~~~~~f~NINTpeDl~~~~~~~~~~~  367 (369)
T PRK14490        323 G--NNSLRSFLATSR--IEELEPTDPEALQNINDPEEMDRAERALSTTK  367 (369)
T ss_pred             C--CccHHHHHhhCC--eEEEcCCCchhcCCCCCHHHHHHHHHHHhhcC
Confidence            1  022344555433  333332  334579999999999998887543

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.59  E-value=1.3e-13  Score=115.70  Aligned_cols=201  Identities=13%  Similarity=0.175  Sum_probs=128.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|+|||.|+++.+.+++ +++|+|++++...+.+.+.+.+   ++..+.++.+  ..+..++++.+++.++.
T Consensus        20 ~pK~l~pv~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~   98 (353)
T TIGR01208        20 RPKQLIPVANKPILQYAIEDLAEAG-ITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGD   98 (353)
T ss_pred             CCccccEECCEeHHHHHHHHHHHCC-CCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            5999999999999999999999985 8999999998323556666643   3444555433  23357889999998852


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccCCCceeeecCccC--e-eeec-CCccc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTLDRKT--L-WEMQ-TPQVI  145 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~~g~v~~~~~r~~--~-~~~~-~P~~f  145 (210)
                        +-++++.||+|+  ...+..+++.+...++  .+.+.++.++    ....++++.+..+.++..  . .... .-+.|
T Consensus        99 --~~~li~~gD~~~--~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy~~  174 (353)
T TIGR01208        99 --DDFVVYLGDNLI--QDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMF  174 (353)
T ss_pred             --CCEEEEECCeec--CccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEEEE
Confidence              335667899987  3678889988765543  4555555443    122233445655433210  0 0011 12455


Q ss_pred             ChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320          146 KPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       146 ~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      +. .+.+.+.....   .++++++....+...|.++.....+..+.+|+||+||..++..+..+.
T Consensus       175 ~~-~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~  238 (353)
T TIGR01208       175 RP-LIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEV  238 (353)
T ss_pred             CH-HHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhc
Confidence            55 34444443221   123455544444456777877666667899999999999999887643

Alternate name: dTDP-D-glucose synthase

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.59  E-value=3.4e-14  Score=109.80  Aligned_cols=166  Identities=13%  Similarity=0.137  Sum_probs=101.5

Q ss_pred             CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE--ecCCccHHHHHHHHHHcccCCC
Q 028320            1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~--~~~~~~~~~si~~~l~~~~~~~   77 (210)
                      .||++++++| +|||+|+++.+...  +++|+|+++++.   .     .++..+..  ..+..+...++..++...+  .
T Consensus        24 ~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~---~-----~~~~~~v~d~~~~~~gpl~gi~~~l~~~~--~   91 (196)
T PRK00560         24 ENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKK---F-----EFNAPFLLEKESDLFSPLFGIINAFLTLQ--T   91 (196)
T ss_pred             CCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchh---c-----ccCCcEEecCCCCCCCcHHHHHHHHHhcC--C
Confidence            3799999999 99999999999854  799999998621   1     11211111  1112233445556665543  6


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHH
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFE  155 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~  155 (210)
                      +.++++.||+||++++++++++.   ..+..+ +++..+.      .+               .|-  +|+...+..+..
T Consensus        92 ~~vlv~~~D~P~i~~~~i~~l~~---~~~~~~-~~~~~~~------~~---------------~Pl~al~~~~~~~~l~~  146 (196)
T PRK00560         92 PEIFFISVDTPFVSFESIKKLCG---KENFSV-TYAKSPT------KE---------------HYLISLWHQSLLNALIY  146 (196)
T ss_pred             CeEEEEecCcCcCCHHHHHHHHh---cCCCCE-EEEccCC------ce---------------eeeEEEEcHHHHHHHHH
Confidence            89999999999999999999853   222222 1222110      11               354  777766665443


Q ss_pred             HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320          156 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       156 ~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      ...+.+   .....+++..+.....+..+...+|||||+||+.++..++.+
T Consensus       147 ~l~~~~---~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~~~~  194 (196)
T PRK00560        147 ALKTQN---YRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQILKSR  194 (196)
T ss_pred             HHHhCC---ccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHHHHh
Confidence            332221   123456665553222223334568999999999998877543

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.59  E-value=1.3e-13  Score=112.45  Aligned_cols=197  Identities=17%  Similarity=0.200  Sum_probs=122.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|||||.|+++.+..++ +++|+|++.+...+.+++.+.+   ++.++.++.+  ..+..+++..|.+.+..
T Consensus        20 ~pK~Llpv~gkPmI~~~L~~l~~aG-i~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~~   98 (286)
T TIGR01207        20 VSKQLLPIYDKPMIYYPLSTLMLAG-IRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGG   98 (286)
T ss_pred             CCceeeEECCEEhHHHHHHHHHHCC-CCEEEEEecCCcHHHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHHHhCC
Confidence            5999999999999999999999886 8999988865543455665543   4555666544  22347889999988852


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----eEEccCCCceeeecCc-----cCeeeecC-Cc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQT-PQ  143 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~-P~  143 (210)
                        +.++++.+|.+|.. ..+..+++.....  ++.+.+.++.++    +...+++|.+..+.++     +.+  ..+ -+
T Consensus        99 --~~~~li~gD~i~~~-~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~g~V~~i~EKp~~~~s~~--~~~GiY  173 (286)
T TIGR01207        99 --DPSALVLGDNIFYG-HDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNY--AVTGLY  173 (286)
T ss_pred             --CCEEEEECCEeccc-cCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCCCeEEEEEECCCCCCCCE--EEEEEE
Confidence              33455569999854 6788888876544  344555565544    2223445666554322     221  111 24


Q ss_pred             ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhh
Q 028320          144 VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       144 ~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~  204 (210)
                      +|+... ...+....   +.+++++|....+...|.......... .++||.||+||..|..+++
T Consensus       174 i~~~~i-~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~  237 (286)
T TIGR01207       174 FYDNRV-VEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ  237 (286)
T ss_pred             EEchHH-HHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence            455443 33333221   122456665554444553222222233 4899999999999998876

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.59  E-value=2.3e-13  Score=108.27  Aligned_cols=200  Identities=17%  Similarity=0.232  Sum_probs=121.0

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|+|||.|+++.+..++ +++|+|+++....+.+.+.+..   ++..+.+...  ..+..+++..+...++ 
T Consensus        21 ~pK~llpv~~~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~-   98 (240)
T cd02538          21 VSKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPEDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIG-   98 (240)
T ss_pred             CCceeeEECCEEhHHHHHHHHHHCC-CCEEEEEeCcchHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcC-
Confidence            5999999999999999999999885 8999998876543445555532   3444544433  1234778888888885 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----eEEccCCCceeeecCccC---eeeecC-Cccc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEMQT-PQVI  145 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~~~-P~~f  145 (210)
                       .+.++++.||+|+.+. ++.++++.+...+  +.+.+.++.++    ....+.+|.+..+.++..   .....+ -+.|
T Consensus        99 -~~~~lv~~gD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~Giyi~  176 (240)
T cd02538          99 -DDPVCLILGDNIFYGQ-GLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYFY  176 (240)
T ss_pred             -CCCEEEEECCEEEccH-HHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCCCcEEEEEECCCCCCCCeEEEEEEEE
Confidence             3446777899998654 7888888775433  34445555443    122344566655433210   111111 2445


Q ss_pred             ChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCC-CeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          146 KPDLLKKGFELVNR---EGLEVTDDVSIVEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       146 ~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~-~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      +...| +.+.....   ..+++++....+...|. .+........++||+||+||..++++++.
T Consensus       177 ~~~~l-~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~~  239 (240)
T cd02538         177 DNDVF-EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQT  239 (240)
T ss_pred             CHHHH-HHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHhh
Confidence            55543 44432211   12344544444434443 22223323578999999999999998763

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.57  E-value=2.4e-13  Score=103.40  Aligned_cols=165  Identities=16%  Similarity=0.176  Sum_probs=98.9

Q ss_pred             CCccceecCC--eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec---CCccHHHHHHHHHHcc-c
Q 028320            1 MPKQYLPLLG--QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL---PGKERQDSVYSGLQEV-D   74 (210)
Q Consensus         1 ~~K~l~~i~g--kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~---~~~~~~~si~~~l~~~-~   74 (210)
                      .+|.|++++|  +|||+|+++++. + .+++|+|++++.. . .    ...++.  ++.   .+.+...++..|+..+ .
T Consensus         3 ~dK~ll~~~g~~~~ll~~~~~~l~-~-~~~~iivv~~~~~-~-~----~~~~~~--~i~d~~~g~gpl~~~~~gl~~~~~   72 (178)
T PRK00576          3 RDKATLPLPGGTTTLVEHVVGIVG-Q-RCAPVFVMAAPGQ-P-L----PELPAP--VLRDELRGLGPLPATGRGLRAAAE   72 (178)
T ss_pred             CCCEeeEeCCCCcCHHHHHHHHHh-h-cCCEEEEECCCCc-c-c----ccCCCC--EeccCCCCCCcHHHHHHHHHHHHh
Confidence            3799999999  999999999875 3 4799999998653 1 1    122322  222   1334466666677654 2


Q ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHH
Q 028320           75 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF  154 (210)
Q Consensus        75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~  154 (210)
                      .+.++++++.||||+++++.++++++.+...+..+. .+. +.     ..+.              .+..|+...+..+.
T Consensus        73 ~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~-~~~-~g-----~~~p--------------l~~~~~~~l~~~l~  131 (178)
T PRK00576         73 AGARLAFVCAVDMPYLTVELIDDLARPAAQTDAEVV-LPW-DG-----RDHY--------------LAAVYRTDLAERVD  131 (178)
T ss_pred             cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCCCcEE-Eec-CC-----CcCc--------------EEEEehHHHHHHHH
Confidence            246899999999999999999999987655443322 221 11     0110              12556655444332


Q ss_pred             HHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320          155 ELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA  199 (210)
Q Consensus       155 ~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a  199 (210)
                       ....++  -..-..+++..+.....+..+...+|||||+||+.+
T Consensus       132 -~~~~~g--~~~~~~~l~~~~~~~v~~~~~~~f~ninTped~~~~  173 (178)
T PRK00576        132 -ALVGAG--ERSMRALVDASDAQRIVMPESRPLTNVNTAADLPAP  173 (178)
T ss_pred             -HHHHcC--CccHHHHHHhCCceEecCCCCCccccCCCHHHHHHh
Confidence             221111  112344555444222223333456799999999765

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.56  E-value=1.7e-13  Score=118.46  Aligned_cols=192  Identities=18%  Similarity=0.219  Sum_probs=122.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-cC-CccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LP-GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-~~-~~~~~~si~~~l~~~~~~~d   78 (210)
                      +||+|+|++|||||+|+++++.+.  +++|+|++++.. +.+.+...+ +  +.++ .. ..+..++++.+++.++. .+
T Consensus        18 ~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~-~~i~~~~~~-~--~~~~~~~~~~g~~~ai~~a~~~l~~-~~   90 (448)
T PRK14357         18 IPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEA-ELVKKLLPE-W--VKIFLQEEQLGTAHAVMCARDFIEP-GD   90 (448)
T ss_pred             CCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHhccc-c--cEEEecCCCCChHHHHHHHHHhcCc-CC
Confidence            599999999999999999999875  489999998765 344443322 2  2233 22 22347889999998853 47


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecC---c----cCeeeecCC-cc
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLD---R----KTLWEMQTP-QV  144 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~---r----~~~~~~~~P-~~  144 (210)
                      .++++++|+||++..+++++++.+.+.++  .+.+.++.++.    ...+ +|.+ +.++   +    +..+..++. +.
T Consensus        91 ~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~g~v-~~~e~~~~~~~~~~~~~~~~GiYv  168 (448)
T PRK14357         91 DLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-GGKY-RIVEDKDAPEEEKKIKEINTGIYV  168 (448)
T ss_pred             eEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-CCeE-EEEECCCCChHHhcCcEEEeEEEE
Confidence            89999999999999999999998866544  44455554331    1122 4555 2222   1    112334454 67


Q ss_pred             cChHHHHHHHHHHHhc---C-CCCCcHHHHHHhCCCCeEEEe--cCCCCccccChhhHHHHHHHhhc
Q 028320          145 IKPDLLKKGFELVNRE---G-LEVTDDVSIVEHLKHPVYITE--GSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       145 f~~~~l~~~~~~~~~~---~-~~~~d~~~~~~~~g~~v~~v~--~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      |+.+.|.+++......   + ++++|....+    .++....  +....++++||+||+.++.+++.
T Consensus       169 ~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~  231 (448)
T PRK14357        169 FSGDFLLEVLPKIKNENAKGEYYLTDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRM  231 (448)
T ss_pred             EEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHH
Confidence            7777666655432211   1 3344433222    2344332  33457889999999999988753

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.56  E-value=4.7e-13  Score=109.32  Aligned_cols=198  Identities=15%  Similarity=0.221  Sum_probs=124.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCC--ccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG--KERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~--~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|||||.|.++.+..++ +++|+|++.+...+.+.+.+.+   ++.++.++.+.  .+..+++..|.+.+. 
T Consensus        24 ~pK~Llpv~gkPmI~~~l~~l~~aG-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~-  101 (292)
T PRK15480         24 VSKQLLPIYDKPMIYYPLSTLMLAG-IRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIG-  101 (292)
T ss_pred             CCceEeEECCEEHHHHHHHHHHHCC-CCEEEEEecCCchHHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHhC-
Confidence            5999999999999999999999986 8999987766543456666543   45556665442  234778888888885 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----eEEccCCCceeeecCc-----cCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~P~~  144 (210)
                      +.++ +++.+|.+|.+ ..+..+++.+...  ++.+.+.++.++    +...+++|.+..+.++     +... .-.=+.
T Consensus       102 ~~~~-~lv~gD~i~~~-~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~g~v~~i~EKP~~p~s~~a-~~GiY~  178 (292)
T PRK15480        102 GDDC-ALVLGDNIFYG-HDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPLQPKSNYA-VTGLYF  178 (292)
T ss_pred             CCCE-EEEECCeeeec-cCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCCCcEEEEEECCCCCCCCEE-EEEEEE
Confidence            2354 55669998864 5688888877554  344445555554    2233545666544321     2211 111244


Q ss_pred             cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhh
Q 028320          145 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       145 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~  204 (210)
                      |+... ....+...   +.+++++|-...+...|.......... .++||.|++||..|+.+++
T Consensus       179 ~~~~v-~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~  241 (292)
T PRK15480        179 YDNDV-VEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA  241 (292)
T ss_pred             EChHH-HHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence            55443 33333211   122567766555555664433334434 5899999999999999887

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.55  E-value=1.3e-13  Score=102.82  Aligned_cols=103  Identities=22%  Similarity=0.340  Sum_probs=82.9

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||+|++++|+|||+|+++++.+.+ +++|+|+++++   .+.+.+.+++..+.... .+.+...|+..|+..+. ..+.+
T Consensus        15 ~K~l~~i~g~~li~~~l~~l~~~~-~~~Ivvv~~~~---~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~-~~~~v   89 (160)
T PF12804_consen   15 PKALLPIGGKPLIERVLEALREAG-VDDIVVVTGEE---EIYEYLERYGIKVVVDPEPGQGPLASLLAALSQLP-SSEPV   89 (160)
T ss_dssp             CGGGSEETTEEHHHHHHHHHHHHT-ESEEEEEESTH---HHHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTST-TSSEE
T ss_pred             CccceeECCccHHHHHHHHhhccC-CceEEEecChH---HHHHHHhccCceEEEeccccCChHHHHHHHHHhcc-cCCCc
Confidence            899999999999999999999986 89999999984   34555566665543332 14567999999999984 47899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAV  109 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~  109 (210)
                      +++.||+||+++++++++++.+...++.+
T Consensus        90 lv~~~D~p~~~~~~l~~l~~~~~~~~~~i  118 (160)
T PF12804_consen   90 LVLPCDQPFLSPELLRRLLEALEKSPADI  118 (160)
T ss_dssp             EEEETTETTS-HHHHHHHHHHHHHTTTSE
T ss_pred             EEEeCCccccCHHHHHHHHHHHhccCCcE
Confidence            99999999999999999999998665533

...

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.55  E-value=5.4e-13  Score=105.68  Aligned_cols=195  Identities=19%  Similarity=0.263  Sum_probs=121.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCCc--cHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPGK--ERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~~--~~~~si~~~l~~~~~   75 (210)
                      .||+|++++|+|||+|+++.+..++ +++|+|+++... ..+.+.+++   ++..+.++.+..  +..+|+..|+..+. 
T Consensus        21 ~pK~l~~i~g~~li~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~-   97 (236)
T cd04189          21 RPKQLIPVAGKPIIQYAIEDLREAG-IEDIGIVVGPTG-EEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLG-   97 (236)
T ss_pred             CCceeeEECCcchHHHHHHHHHHCC-CCEEEEEcCCCH-HHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhcC-
Confidence            4899999999999999999999885 899999999864 556666654   344555554422  34788999998875 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecCc-----cCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDR-----KTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~r-----~~~~~~~~P~~  144 (210)
                      + +-++++.||+.+ + ..+..+++.+...++  ++.+.+..++.    ...+ +|.+..+.++     +.... -.-+.
T Consensus        98 ~-~~~li~~~D~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~~-~Giy~  172 (236)
T cd04189          98 D-EPFVVYLGDNLI-Q-EGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVD-DGRIVRLVEKPKEPPSNLAL-VGVYA  172 (236)
T ss_pred             C-CCEEEEECCeec-C-cCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEc-CCeEEEEEECCCCCCCCEEE-EEEEE
Confidence            2 345668899976 3 457778777655443  45555554331    1223 3455443321     11111 11133


Q ss_pred             cChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320          145 IKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       145 f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      |..+.+. .+.....   .++++++....+...|.++.....+..+.+|+||+||..++..+-
T Consensus       173 ~~~~~~~-~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l  234 (236)
T cd04189         173 FTPAIFD-AISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL  234 (236)
T ss_pred             eCHHHHH-HHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence            4433332 2322111   123455544444456777877666566899999999999998764

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=99.55  E-value=4.4e-14  Score=110.59  Aligned_cols=103  Identities=17%  Similarity=0.268  Sum_probs=78.2

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccH-HHHHHHHHHcccC-CCCE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVDF-NSEL   79 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~-~~si~~~l~~~~~-~~d~   79 (210)
                      .|+|++++|||||.|+|+++++++.+++|+|+|+++.   +.+.++++|+.+....+.... .+....++..... +.++
T Consensus        15 ~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~---i~~~~~~~g~~v~~~~~~~~~~~~r~~~~~~~~~~~~~~~   91 (217)
T PF02348_consen   15 GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEE---IDDIAEEYGAKVIFRRGSLADDTDRFIEAIKHFLADDEDI   91 (217)
T ss_dssp             TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHH---HHHHHHHTTSEEEE--TTSSSHHHHHHHHHHHHTCSTTSE
T ss_pred             cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHH---HHHHHHHcCCeeEEcChhhcCCcccHHHHHHHhhhhHHhh
Confidence            4999999999999999999999999999999999875   457788888777666553222 3333444444431 2459


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      ++.++||.||++++.++++++.+.+.+.
T Consensus        92 vv~~~~d~Pll~~~~i~~~i~~~~~~~~  119 (217)
T PF02348_consen   92 VVRLQGDSPLLDPTSIDRAIEDIREANE  119 (217)
T ss_dssp             EEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred             ccccCCeeeECCHHHHHHHHHHHhcCch
Confidence            9999999999999999999999987653

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.54  E-value=4e-13  Score=116.43  Aligned_cols=195  Identities=15%  Similarity=0.177  Sum_probs=121.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      +||+|+|++|+|||+|+++++..++ +++++|++++.. +.+++.+.+.  .+.++.+  ..+..++++.++..++ +.+
T Consensus        23 ~pK~l~~i~gkpli~~~i~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~--~~~~i~~~~~~Gt~~al~~a~~~l~-~~~   97 (456)
T PRK09451         23 LPKVLHTLAGKPMVQHVIDAANELG-AQHVHLVYGHGG-DLLKQTLADE--PLNWVLQAEQLGTGHAMQQAAPFFA-DDE   97 (456)
T ss_pred             CChhcceeCChhHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHhhccC--CcEEEECCCCCCcHHHHHHHHHhhc-cCC
Confidence            4899999999999999999998875 899999998764 4455554432  3344432  2234788998988875 346


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceE---EccCCCceeeecCccC-------eeeecC-CcccCh
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK---EANSESFVVRTLDRKT-------LWEMQT-PQVIKP  147 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~~~~r~~-------~~~~~~-P~~f~~  147 (210)
                      .+++++||+||+++++++++++.....+.++...++.++..   ..+++|.+.++.++..       .....+ -+.|+.
T Consensus        98 ~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~~~~~~yG~v~~~~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~  177 (456)
T PRK09451         98 DILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITRENGKVVGIVEQKDATDEQRQIQEINTGILVANG  177 (456)
T ss_pred             cEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEcCCCCCceEEEecCCeEEEEEECCCCChHHhhccEEEEEEEEEEH
Confidence            78999999999999999999987655554555555544311   1233566665543211       011122 155666


Q ss_pred             HHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--------CCCCccccChhhHHHHH
Q 028320          148 DLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--------SYTNIKVTTPDDLLIAE  200 (210)
Q Consensus       148 ~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~--------~~~~~dIdt~~Dl~~a~  200 (210)
                      ..|.+++.....    .+++++|-...+...|.++.....        ...+.++.+++++..+.
T Consensus       178 ~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~  242 (456)
T PRK09451        178 ADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAE  242 (456)
T ss_pred             HHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence            666665544221    224455444444456667765532        12235666676666543

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=99.51  E-value=2.8e-12  Score=98.39  Aligned_cols=170  Identities=18%  Similarity=0.218  Sum_probs=103.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE-ecCCccHHHHHHHHHHcccCCCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-~~~~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .+|.+.+++|+|||+|+++++...  ++.++|+...+ ...    ...++.++.. ..++.+...++.+||+...  .+.
T Consensus        19 ~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~-~~~----~~~~g~~vv~D~~~~~GPL~Gi~~al~~~~--~~~   89 (192)
T COG0746          19 RDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRN-QGR----YAEFGLPVVPDELPGFGPLAGILAALRHFG--TEW   89 (192)
T ss_pred             cccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCc-hhh----hhccCCceeecCCCCCCCHHHHHHHHHhCC--CCe
Confidence            379999999999999999999865  45444444433 221    2234444322 1222356899999999986  789


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      ++++.||+||++++.++.++......++++. .+.        ++|.+.-.           --.|+. .+...+.....
T Consensus        90 ~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~-~~~--------~~g~~~Pl-----------~aly~~-~l~~~l~~~l~  148 (192)
T COG0746          90 VLVLPCDMPFIPPELVERLLSAFKQTGAAIV-PAH--------DDGRLEPL-----------FALYHR-ALLPALEEYLA  148 (192)
T ss_pred             EEEEecCCCCCCHHHHHHHHHhhcccCCcEE-EeC--------CCCceeeE-----------EEEehH-HHHHHHHHHHH
Confidence            9999999999999999999998876653221 111        13322100           022322 22333332222


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEecCC--CCccccChhhHHHHHHH
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERI  202 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~~~--~~~dIdt~~Dl~~a~~~  202 (210)
                      ++-  .....+++..+..........  .-++||||+||+.+...
T Consensus       149 ~g~--~~~~~~l~~~~~~~v~~~~~~~~~F~NiNtpeDL~~~~~~  191 (192)
T COG0746         149 KGE--RRLSALLERLGTEYVEFEDLEEDSFFNINTPEDLARAREK  191 (192)
T ss_pred             hCC--ccHHHHHHHCCcEEEecCcCCcccccccCCHHHHHHHhcc
Confidence            221  122345555554443333333  56899999999988753

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.51  E-value=1e-12  Score=103.19  Aligned_cols=188  Identities=15%  Similarity=0.071  Sum_probs=112.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh--cCCcEEEecCC---ccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPG---KERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~--~~~~v~~~~~~---~~~~~si~~~l~~~~~   75 (210)
                      +||+++|++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+.+  ++..+.+..+.   .+...++..++..+. 
T Consensus        20 ~pK~llpi~g~~li~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~-   96 (221)
T cd06422          20 RPKPLVPVAGKPLIDHALDRLAAAG-IRRIVVNTHHLA-DQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLG-   96 (221)
T ss_pred             CCCceeeECCEEHHHHHHHHHHHCC-CCEEEEEccCCH-HHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcC-
Confidence            5899999999999999999999986 899999999875 455665554  45555444332   234778999999885 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHH--hcCCeEEee--ecccc----eEEccCCCceeeecCccCeeeecC-CcccC
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLGV--PAKAT----IKEANSESFVVRTLDRKTLWEMQT-PQVIK  146 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~--~~~~~~~~~--~~~~~----~~~~~~~g~v~~~~~r~~~~~~~~-P~~f~  146 (210)
                       .+.++++.||+++-  ..+.++++...  ..++.+++.  +..+.    ....+++|.+....++.......+ -+.|.
T Consensus        97 -~~~~lv~~~D~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~v~~~~~~~~~~~~~~Giyi~~  173 (221)
T cd06422          97 -DEPFLVVNGDILWD--GDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDADGRLRRGGGGAVAPFTFTGIQILS  173 (221)
T ss_pred             -CCCEEEEeCCeeeC--CCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCCCcEeecccCCCCceEEEEEEEEc
Confidence             26788899999763  35777777765  344433322  32221    122344555554332211111111 23445


Q ss_pred             hHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320          147 PDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA  199 (210)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a  199 (210)
                      ...+....    ...+++++....+...+ ++........+.||+|++||..|
T Consensus       174 ~~~l~~l~----~~~~~~~d~~~~l~~~~-~~~~~~~~g~w~di~t~~~~~~a  221 (221)
T cd06422         174 PELFAGIP----PGKFSLNPLWDRAIAAG-RLFGLVYDGLWFDVGTPERLLAA  221 (221)
T ss_pred             HHHHhhCC----cCcccHHHHHHHHHHcC-CeEEEecCCEEEcCCCHHHHhhC
Confidence            44433221    11223343333333334 34434455679999999999764

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=99.50  E-value=1.8e-13  Score=105.53  Aligned_cols=91  Identities=14%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCC
Q 028320           11 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV   90 (210)
Q Consensus        11 kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli   90 (210)
                      +|||+|+++++.++. +++++|+++++.   +.+.+..+++.+. ...+.+..+++.+|++.+..+++.++++.||+||+
T Consensus        30 ~~ll~~~l~~l~~~~-~~~vvvv~~~~~---~~~~~~~~~v~~i-~~~~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l  104 (195)
T TIGR03552        30 LAMLRDVITALRGAG-AGAVLVVSPDPA---LLEAARNLGAPVL-RDPGPGLNNALNAALAEAREPGGAVLILMADLPLL  104 (195)
T ss_pred             HHHHHHHHHHHHhcC-CCCEEEECCCHH---HHHHHHhcCCEEE-ecCCCCHHHHHHHHHHHhhccCCeEEEEeCCCCCC
Confidence            689999999999875 588999888643   3444555554432 22223568999999998754457899999999999


Q ss_pred             CHHHHHHHHHHHHhcC
Q 028320           91 LSKDVQKVLMDALRVG  106 (210)
Q Consensus        91 ~~~~i~~~i~~~~~~~  106 (210)
                      ++++++++++.+...+
T Consensus       105 ~~~~i~~l~~~~~~~~  120 (195)
T TIGR03552       105 TPRELKRLLAAATEGD  120 (195)
T ss_pred             CHHHHHHHHHhcccCC
Confidence            9999999999775433

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.50  E-value=2.6e-12  Score=103.01  Aligned_cols=199  Identities=9%  Similarity=0.019  Sum_probs=118.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc---CCcEEE---------ec-----------
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKF---------SL-----------   57 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~---~~~v~~---------~~-----------   57 (210)
                      +||+|+|++|+|||+|+++.+.+++ +++|+|++++.. +.+.+...+.   +..+.+         ..           
T Consensus        19 ~pK~llpv~~~p~i~~~~~~~~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (253)
T cd02524          19 KPKPMVEIGGRPILWHIMKIYSHYG-HNDFILCLGYKG-HVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLV   96 (253)
T ss_pred             CCceEEEECCEEHHHHHHHHHHhCC-CceEEEECCCCH-HHHHHHHHhhhhhcCceeEeecccceeeecccccccceeec
Confidence            5999999999999999999999885 899999999876 4566666542   211111         11           


Q ss_pred             -C--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccc--c--eEEccCCCceeee
Q 028320           58 -P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA--T--IKEANSESFVVRT  130 (210)
Q Consensus        58 -~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~--~--~~~~~~~g~v~~~  130 (210)
                       .  .....+++..|++.+.. .+.++++.||.- . ...+..+++.....++.++.+.+..  .  ....+++|.+..+
T Consensus        97 ~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~i-~-~~dl~~ll~~h~~~~~~~tl~~~~~~~~~g~v~~d~~g~V~~~  173 (253)
T cd02524          97 DTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDGV-S-DVNINALIEFHRSHGKLATVTAVHPPGRFGELDLDDDGQVTSF  173 (253)
T ss_pred             ccCcccccHHHHHHHHHhcCC-CCeEEEEcCCEE-E-CCCHHHHHHHHHHcCCCEEEEEecCCCcccEEEECCCCCEEEE
Confidence             0  12247788899988852 267888999963 3 4466888887766565333322211  1  1233445666544


Q ss_pred             cCccCe--eeecC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320          131 LDRKTL--WEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       131 ~~r~~~--~~~~~-P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      .+....  ....+ -+.|....+ ..+...  ...+.++....+...| ++........+.+|+|++||+.++.+++..+
T Consensus       174 ~ekp~~~~~~i~~Giyi~~~~l~-~~l~~~--~~~~~~d~l~~li~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~~  249 (253)
T cd02524         174 TEKPQGDGGWINGGFFVLEPEVF-DYIDGD--DTVFEREPLERLAKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNSGK  249 (253)
T ss_pred             EECCCCCCceEEEEEEEECHHHH-Hhhccc--cchhhHHHHHHHHhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHcCC
Confidence            322100  01111 133444433 222211  1122334333333444 5555554457999999999999999997655


Q ss_pred             C
Q 028320          208 E  208 (210)
Q Consensus       208 ~  208 (210)
                      +
T Consensus       250 ~  250 (253)
T cd02524         250 A  250 (253)
T ss_pred             C
Confidence            4

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.49  E-value=8.1e-13  Score=100.92  Aligned_cols=102  Identities=16%  Similarity=0.107  Sum_probs=79.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||.|+++++.+++ +++|+|++++.. +.++..+++.+..+ ....+.+...++..|++.+. ..+.+
T Consensus        17 ~~K~Ll~i~GkplI~~vi~~l~~~~-i~~I~Vv~~~~~-~~~~~~l~~~~~~~-~~~~g~G~~~~l~~al~~~~-~~~~~   92 (183)
T TIGR00454        17 VEKPLIEVCGRCLIDHVLSPLLKSK-VNNIIIATSPHT-PKTEEYINSAYKDY-KNASGKGYIEDLNECIGELY-FSEPF   92 (183)
T ss_pred             CCceEeEECCEEHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHhhcCcEE-EecCCCCHHHHHHHHhhccc-CCCCE
Confidence            3899999999999999999998886 899999998764 45566665433222 22345566788999998653 24678


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      +++.||+||+++++++.+++.+...+
T Consensus        93 lv~~~D~P~i~~~~i~~li~~~~~~~  118 (183)
T TIGR00454        93 LVVSSDLINLRSKIIDSIVDYYYCIK  118 (183)
T ss_pred             EEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999886543

At this time this gene appears to be present only in Archea

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.46  E-value=8.1e-12  Score=100.28  Aligned_cols=196  Identities=13%  Similarity=0.117  Sum_probs=118.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-----CCcEE-------------------Ee
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-----NVDLK-------------------FS   56 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-----~~~v~-------------------~~   56 (210)
                      +||+|+|++|+|||.|+++.+..++ +++|+|++++.. +.+.+...++     +..+.                   +.
T Consensus        20 ~pK~llpv~g~pii~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (254)
T TIGR02623        20 RPKPMVEIGGKPILWHIMKIYSHHG-INDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLV   97 (254)
T ss_pred             CCcceeEECCEEHHHHHHHHHHHCC-CCEEEEEcCCCH-HHHHHHHHhhhhcccCeeEEecccccccccccCCccceeee
Confidence            5999999999999999999999885 999999999775 4555555432     11111                   11


Q ss_pred             cCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----eEEccCCCceeee
Q 028320           57 LPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVRT  130 (210)
Q Consensus        57 ~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~g~v~~~  130 (210)
                      .++  .+..+++..+.+.+.  .+.++++.||.  +...++.++++.....++.++.+.+.++    ....+ +|.+..+
T Consensus        98 ~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~--i~~~dl~~~~~~h~~~~~d~tl~~~~~~~~yG~v~~d-~~~V~~~  172 (254)
T TIGR02623        98 DTGESTQTGGRLKRVREYLD--DEAFCFTYGDG--VADIDIKALIAFHRKHGKKATVTAVQPPGRFGALDLE-GEQVTSF  172 (254)
T ss_pred             ecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCe--EecCCHHHHHHHHHHcCCCEEEEEecCCCcccEEEEC-CCeEEEE
Confidence            111  123678888888885  35677899997  5577889999887766653333222222    11223 3555544


Q ss_pred             cCccC--eeeecC-CcccChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320          131 LDRKT--LWEMQT-PQVIKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       131 ~~r~~--~~~~~~-P~~f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      .++..  -..+.+ -++|....| ..+..   ... ..+|....+...+ ++.....+..+.||+||+|++.++..++..
T Consensus       173 ~Ekp~~~~~~i~~Giyi~~~~il-~~l~~---~~~~~~~d~i~~l~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~  247 (254)
T TIGR02623       173 QEKPLGDGGWINGGFFVLNPSVL-DLIDG---DATVWEQEPLETLAQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESG  247 (254)
T ss_pred             EeCCCCCCCeEEEEEEEEcHHHH-hhccc---cCchhhhhHHHHHHhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence            33210  011112 245555444 33322   111 2233333333344 465555556789999999999999998865


Q ss_pred             cC
Q 028320          207 SE  208 (210)
Q Consensus       207 ~~  208 (210)
                      -+
T Consensus       248 ~~  249 (254)
T TIGR02623       248 RA  249 (254)
T ss_pred             CC
Confidence            43

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=99.45  E-value=2.2e-12  Score=102.80  Aligned_cols=201  Identities=22%  Similarity=0.260  Sum_probs=124.0

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeE-EEEeCCCChHHHHHHHhhc---CCcEEEec--CCccHHHHHHHHHHcc
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQEV   73 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~i-vVv~~~~~~~~i~~~~~~~---~~~v~~~~--~~~~~~~si~~~l~~~   73 (210)
                      +||+|+|++|+ |||.|+++.+..++ ++++ +|++++.. +.+.+.+++.   +.++.++.  .+.+..+++..+...+
T Consensus        20 ~pK~ll~i~g~~pli~~~l~~l~~~g-~~~ii~V~~~~~~-~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i   97 (248)
T PF00483_consen   20 IPKPLLPIGGKYPLIDYVLENLANAG-IKEIIVVVNGYKE-EQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDFI   97 (248)
T ss_dssp             SSGGGSEETTEEEHHHHHHHHHHHTT-CSEEEEEEETTTH-HHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHHH
T ss_pred             cccccceecCCCcchhhhhhhhcccC-CceEEEEEeeccc-ccccccccccccccccceeeecccccchhHHHHHHHHHh
Confidence            59999999999 99999999999975 8995 55444543 5677766653   23455543  2345688899999888


Q ss_pred             cCC--CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--e--EEeeecccc----eEEccCCCceeeecCc-cC-e--eee
Q 028320           74 DFN--SELVCIHDSARPLVLSKDVQKVLMDALRVGA--A--VLGVPAKAT----IKEANSESFVVRTLDR-KT-L--WEM  139 (210)
Q Consensus        74 ~~~--~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~--~~~~~~~~~----~~~~~~~g~v~~~~~r-~~-~--~~~  139 (210)
                      ..+  .+.++++.||.-+-.  .+..+++.+...++  .  +...+..++    ....+++|.|.++.++ .. .  ...
T Consensus        98 ~~~~~~~~~lv~~gD~i~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~~~~~  175 (248)
T PF00483_consen   98 EEEDDDEDFLVLNGDIIFDD--DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPNASNLI  175 (248)
T ss_dssp             TTSEE-SEEEEETTEEEEST--THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHSHSSEE
T ss_pred             hhccccceEEEEeccccccc--hhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEeccCcccccceec
Confidence            642  246899999985554  88999988876554  2  223333322    2334555777766532 11 1  111


Q ss_pred             cC-CcccChHHHHHHHHHHHh--cC-CCCCcHHHHHHhCCCCeEEEecCC--CCccccChhhHHHHHHHhhc
Q 028320          140 QT-PQVIKPDLLKKGFELVNR--EG-LEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       140 ~~-P~~f~~~~l~~~~~~~~~--~~-~~~~d~~~~~~~~g~~v~~v~~~~--~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      .+ -+.|....|....+....  .+ ..++|....+...|..+.......  .++||+||+||..|+..+..
T Consensus       176 ~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  176 NTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             EEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred             cCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence            22 255666655554331111  11 123444344445666565444433  68999999999999987653

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=99.45  E-value=6.5e-12  Score=102.85  Aligned_cols=196  Identities=15%  Similarity=0.165  Sum_probs=117.0

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-------------------------cCCcEEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDLKF   55 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-------------------------~~~~v~~   55 (210)
                      +||+|+|++|||||+|+++.+..++ +++|+|++++.. +.+.+...+                         ++.++.+
T Consensus        24 ~PKpLvpV~gkPiI~~vl~~l~~~G-i~~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  101 (297)
T TIGR01105        24 IPKEMLPIVDKPMIQYIVDEIVAAG-IKEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMN  101 (297)
T ss_pred             CCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEecCCh-HHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEE
Confidence            5999999999999999999999886 899999999975 345554431                         2334555


Q ss_pred             ecCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCH-------HHHHHHHHHHHhcCC-eEEeeecc-cc----eEE
Q 028320           56 SLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-------KDVQKVLMDALRVGA-AVLGVPAK-AT----IKE  120 (210)
Q Consensus        56 ~~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~-------~~i~~~i~~~~~~~~-~~~~~~~~-~~----~~~  120 (210)
                      +.+.  .+..+++..|...+. +.++ +++.+|. +++.       .++.++++.+...++ ++.+.++. ++    +..
T Consensus       102 ~~q~~~lGtg~Av~~a~~~l~-~~~f-lvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~yGvv~  178 (297)
T TIGR01105       102 VRQAQPLGLGHSILCARPVVG-DNPF-VVVLPDI-IIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQ  178 (297)
T ss_pred             eeCCCcCchHHHHHHHHHHhC-CCCE-EEEECCe-eccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCccceEEE
Confidence            5442  235888999999985 3344 5555885 4442       488899987765554 44444432 22    111


Q ss_pred             c----cCCCce---eeecCc-cC-----eeeecC-CcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEec
Q 028320          121 A----NSESFV---VRTLDR-KT-----LWEMQT-PQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEG  183 (210)
Q Consensus       121 ~----~~~g~v---~~~~~r-~~-----~~~~~~-P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~  183 (210)
                      .    +.+|.+   .+.+++ ..     .....+ -++|+...|. .+.....   ++++++|....+... .++.....
T Consensus       179 ~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~-~~v~~~~~  256 (297)
T TIGR01105       179 TKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKK-QSVDAMLM  256 (297)
T ss_pred             ecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhc-CCEEEEEe
Confidence            2    223543   333221 00     011112 2455555433 3333211   124566655444443 35655444


Q ss_pred             CCCCccccChhhHHHHHHHh
Q 028320          184 SYTNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       184 ~~~~~dIdt~~Dl~~a~~~~  203 (210)
                      ...++||.||+||..+..-+
T Consensus       257 ~g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       257 TGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             ccEEECCCCHHHHHHHHHHH
Confidence            55789999999999995443

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=99.44  E-value=6e-12  Score=101.62  Aligned_cols=198  Identities=13%  Similarity=0.143  Sum_probs=118.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh----------c--------------CCcEEEe
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------I--------------NVDLKFS   56 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~----------~--------------~~~v~~~   56 (210)
                      +||+++|++|+|||.|+++.+.+++ +++|+|++++.. ..+.+...+          .              +..+.++
T Consensus        21 ~pK~llpv~gkpli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (267)
T cd02541          21 IPKEMLPIVDKPVIQYIVEEAVAAG-IEDIIIVTGRGK-RAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYV   98 (267)
T ss_pred             CCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEeCCch-HHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEE
Confidence            5999999999999999999999875 899999999875 334333321          1              2233344


Q ss_pred             cCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHH-HHHHHHHHHHhcCCe-EEeeecc--cc----eEEccC---
Q 028320           57 LPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK-DVQKVLMDALRVGAA-VLGVPAK--AT----IKEANS---  123 (210)
Q Consensus        57 ~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~-~i~~~i~~~~~~~~~-~~~~~~~--~~----~~~~~~---  123 (210)
                      ...  .+..+++..++..++.  +.++++.+|.++...+ +++++++.+...++. +.+.++.  ++    ....+.   
T Consensus        99 ~~~~~~Gt~~al~~~~~~i~~--~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~  176 (267)
T cd02541          99 RQKEPLGLGHAVLCAKPFIGD--EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDVSKYGIVKGEKIDG  176 (267)
T ss_pred             EcCCCCChHHHHHHHHHHhCC--CceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChhcCccceEEEeecCCC
Confidence            321  2347889999988862  5578888999988765 899999887655543 3333332  11    112232   


Q ss_pred             -CCceeeecCcc----Ce-eeec-CCcccChHHHHHHHHHHHh--c-CCCCCcHHHHHHhCCCCeEEEecCCCCccccCh
Q 028320          124 -ESFVVRTLDRK----TL-WEMQ-TPQVIKPDLLKKGFELVNR--E-GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTP  193 (210)
Q Consensus       124 -~g~v~~~~~r~----~~-~~~~-~P~~f~~~~l~~~~~~~~~--~-~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~  193 (210)
                       .+.+..+.++.    .. .... .-++|....|.. +.....  . .+++++....+...+ ++........+.||+||
T Consensus       177 ~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~-l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~digt~  254 (267)
T cd02541         177 DVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDI-LENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCGNK  254 (267)
T ss_pred             CceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHH-HHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCCCH
Confidence             12454433221    00 1111 124556554433 322111  1 133444333333444 67665555579999999


Q ss_pred             hhHHHHHHHhh
Q 028320          194 DDLLIAERILN  204 (210)
Q Consensus       194 ~Dl~~a~~~~~  204 (210)
                      +||..+..-+.
T Consensus       255 ~~y~~a~~~~~  265 (267)
T cd02541         255 LGYLKATVEFA  265 (267)
T ss_pred             HHHHHHHHHHh
Confidence            99999887553

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=99.44  E-value=4.8e-12  Score=105.35  Aligned_cols=94  Identities=17%  Similarity=0.143  Sum_probs=68.1

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE-ecCCccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||.|++++|+||++|+++.+...  +++|+|+++++..   .. ....+..+.. ...+.+...|+..|++..+  .+.+
T Consensus       177 dKaLL~~~GkpLl~~~ie~l~~~--~~~ViVv~~~~~~---~~-~~~~~v~~I~D~~~~~GPlagI~aaL~~~~--~~~~  248 (346)
T PRK14500        177 DKALLNYQGQPHAQYLYDLLAKY--CEQVFLSARPSQW---QG-TPLENLPTLPDRGESVGPISGILTALQSYP--GVNW  248 (346)
T ss_pred             CcccceeCCccHHHHHHHHHHhh--CCEEEEEeCchHh---hh-ccccCCeEEeCCCCCCChHHHHHHHHHhCC--CCCE
Confidence            79999999999999999998753  7899998865421   11 0000111111 1113456899999999865  3456


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDAL  103 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~  103 (210)
                      +++.||+||++++.++.+++.+.
T Consensus       249 lVl~cDmP~l~~~~l~~L~~~~~  271 (346)
T PRK14500        249 LVVACDLAYLNSETVEKLLAHYR  271 (346)
T ss_pred             EEEECCcCCCCHHHHHHHHHhhh
Confidence            88999999999999999998764

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.43  E-value=1.1e-11  Score=97.86  Aligned_cols=93  Identities=19%  Similarity=0.249  Sum_probs=68.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-CCcEEEecC--CccHHHHHHHHHHcccCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLP--GKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-~~~v~~~~~--~~~~~~si~~~l~~~~~~~   77 (210)
                      +||+++|++|+|||+|+++.+.+++ +++|+|++++.. +.+.+.+.++ ++.+.+...  ..+...|+..|+..+.   
T Consensus        19 ~pK~l~~~~g~~li~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~---   93 (229)
T cd02523          19 RPKCLLEINGKPLLERQIETLKEAG-IDDIVIVTGYKK-EQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFLD---   93 (229)
T ss_pred             CCceeeeECCEEHHHHHHHHHHHCC-CceEEEEeccCH-HHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHcC---
Confidence            4899999999999999999999885 899999999865 4556655542 322222211  2334788999998872   


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHH
Q 028320           78 ELVCIHDSARPLVLSKDVQKVL   99 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i   99 (210)
                      +.++++.||.++ +++.++.++
T Consensus        94 ~~~lv~~~D~~~-~~~~~~~~~  114 (229)
T cd02523          94 EDFLLLEGDVVF-DPSILERLL  114 (229)
T ss_pred             CCEEEEeCCEec-CHHHHHHHH
Confidence            568889999986 676666655

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=3.2e-11  Score=101.29  Aligned_cols=197  Identities=18%  Similarity=0.208  Sum_probs=122.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCC--ccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG--KERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~--~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|||||+|+++.+.+.+ +++++|++++.. +.+++.+.+   ++..+.++...  .+...+++++.+.+..
T Consensus        22 ~PKPllpI~gkPii~~~l~~L~~~G-v~eivi~~~y~~-~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~   99 (358)
T COG1208          22 RPKPLLPIAGKPLIEYVLEALAAAG-VEEIVLVVGYLG-EQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGG   99 (358)
T ss_pred             CCcccceeCCccHHHHHHHHHHHCC-CcEEEEEeccch-HHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcCC
Confidence            5999999999999999999999875 999999999986 577777766   35667765432  2347889999999863


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccCC-CceeeecCcc-------CeeeecC
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSE-SFVVRTLDRK-------TLWEMQT  141 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~~-g~v~~~~~r~-------~~~~~~~  141 (210)
                        +.++++.||..+-..  ++.+++.++..++  .+....+.++    +...+.+ +.+....++.       .+... .
T Consensus       100 --~~f~v~~GDv~~~~d--l~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~-G  174 (358)
T COG1208         100 --DDFLVLNGDVLTDLD--LSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINA-G  174 (358)
T ss_pred             --CcEEEEECCeeeccC--HHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEEEecCCCCCCCCceEEe-E
Confidence              667888899865544  9999988876643  3333344333    1112212 3454332221       11110 1


Q ss_pred             CcccChHHHHHHHHHHHhcCCCCCc-HHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320          142 PQVIKPDLLKKGFELVNREGLEVTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       142 P~~f~~~~l~~~~~~~~~~~~~~~d-~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      -+.|+...|. .+...  ....+.+ -...+.+.+..+.....+..++||+||+||..|++.+....
T Consensus       175 iyi~~~~v~~-~i~~~--~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~  238 (358)
T COG1208         175 IYIFDPEVFD-YIEKG--ERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGD  238 (358)
T ss_pred             EEEECHHHhh-hcccC--CcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcc
Confidence            1333433332 11110  1112222 22233344544665555558999999999999999887543

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.39  E-value=2.2e-11  Score=97.95  Aligned_cols=193  Identities=13%  Similarity=0.130  Sum_probs=114.2

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh----------------------c--CCcEEEe
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------------------I--NVDLKFS   56 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~----------------------~--~~~v~~~   56 (210)
                      +||+++|++|+|||+|+++.+..++ +++|+|++++.. ..+.+...+                      +  +..+.++
T Consensus        21 ~pK~llpi~g~pli~~~l~~l~~~g-i~~v~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (260)
T TIGR01099        21 IPKEMLPIVDKPLIQYVVEEAVEAG-IEDILIVTGRGK-RAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYV   98 (260)
T ss_pred             CCceeEEECCEEHHHHHHHHHHhCC-CCEEEEEeCCcH-HHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEE
Confidence            5899999999999999999999885 899999999875 334443321                      0  1123333


Q ss_pred             cC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCe-EEeeecc--cc----eEEcc---C
Q 028320           57 LP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-KDVQKVLMDALRVGAA-VLGVPAK--AT----IKEAN---S  123 (210)
Q Consensus        57 ~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~-~~i~~~i~~~~~~~~~-~~~~~~~--~~----~~~~~---~  123 (210)
                      ..  ..+..+++..++..+.  .+.++++.+|.|+... ++++.+++.+...++. +++.++.  ++    +...+   +
T Consensus        99 ~~~~~~G~~~al~~~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~g~v~~d~~~~  176 (260)
T TIGR01099        99 RQKEQKGLGHAVLCAEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEEVSKYGVIDGEGVEE  176 (260)
T ss_pred             ecCCCCCHHHHHHHHHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEECChhhcccCceEEeccccC
Confidence            22  2234788888988874  3557888999999877 5899999988766653 3333322  11    11222   1


Q ss_pred             -CCceeeecCcc-----CeeeecC-CcccChHHHHHHHHHHHhc--CCCCCcHHHHHHhCCCCeEEEecCCCCccccChh
Q 028320          124 -ESFVVRTLDRK-----TLWEMQT-PQVIKPDLLKKGFELVNRE--GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPD  194 (210)
Q Consensus       124 -~g~v~~~~~r~-----~~~~~~~-P~~f~~~~l~~~~~~~~~~--~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~  194 (210)
                       +|.|..+.++.     .-....+ -++|....|..+.......  .++++|....+... .++........+.||.|++
T Consensus       177 ~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~-~~v~~~~~~g~w~digs~~  255 (260)
T TIGR01099       177 GLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEK-ETVYAYKFKGKRYDCGSKL  255 (260)
T ss_pred             CceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhc-CCEEEEEcceEEEeCCCHH
Confidence             24565443211     0011111 2556655444332211111  13344433333333 3566555556799999999


Q ss_pred             hHHH
Q 028320          195 DLLI  198 (210)
Q Consensus       195 Dl~~  198 (210)
                      ||..
T Consensus       256 ~y~~  259 (260)
T TIGR01099       256 GYLK  259 (260)
T ss_pred             HHhh
Confidence            9865

Built to distinquish between the highly similar genes galU and galF

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.39  E-value=3e-11  Score=102.37  Aligned_cols=200  Identities=13%  Similarity=0.072  Sum_probs=121.1

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCC-----cEE----EecC-----CccH
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INV-----DLK----FSLP-----GKER   62 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~-----~v~----~~~~-----~~~~   62 (210)
                      +||+|+|++|| |||+|+++.+.+++ +++|+|++++.. +.+.+..++   ++.     .+.    +...     ..+.
T Consensus        24 ~PK~llpv~gk~pli~~~l~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gt  101 (380)
T PRK05293         24 IAKPAVPFGGKYRIIDFTLSNCANSG-IDTVGVLTQYQP-LELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGT  101 (380)
T ss_pred             CccceeeeCCceeehhHHHHHHHhCC-CCEEEEEecCCH-HHHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcccCCc
Confidence            59999999999 89999999999985 899999999976 456665532   221     112    2211     1234


Q ss_pred             HHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeec--ccc----eEEccCCCceeeecCc
Q 028320           63 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPA--KAT----IKEANSESFVVRTLDR  133 (210)
Q Consensus        63 ~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~--~~~----~~~~~~~g~v~~~~~r  133 (210)
                      .++++.|++.+.. +.+.++++.+|.  +...++.++++.....++.  +.+..+  .++    +...+++|.+..+.++
T Consensus       102 a~al~~a~~~l~~~~~~~~lV~~gD~--l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~eK  179 (380)
T PRK05293        102 AHAIYQNIDYIDQYDPEYVLILSGDH--IYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEK  179 (380)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEeC
Confidence            7889999988853 236788999997  5566888888877665542  222222  122    1223445666543322


Q ss_pred             cC---eeeecC-CcccChHHHHHHHHHHHhcC---C-CCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320          134 KT---LWEMQT-PQVIKPDLLKKGFELVNREG---L-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       134 ~~---~~~~~~-P~~f~~~~l~~~~~~~~~~~---~-~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      ..   .....+ =+.|....|..++.......   . +.+|....+...|.++.....+..+.+|+|++||..++..+-
T Consensus       180 p~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l  258 (380)
T PRK05293        180 PKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELL  258 (380)
T ss_pred             CCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHc
Confidence            10   111122 25566665655554322111   1 122333333345667776665567899999999999985443

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.38  E-value=1.9e-11  Score=95.71  Aligned_cols=188  Identities=12%  Similarity=0.124  Sum_probs=109.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCC--ccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG--KERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~--~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|+|||+|+++.+.+++ +++|+|++++.. +.+.+.+.+   ++..+.++...  .+..+++..+.+..  
T Consensus        19 ~pK~ll~~~g~pli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~--   94 (220)
T cd06426          19 TPKPMLKVGGKPILETIIDRFIAQG-FRNFYISVNYLA-EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKP--   94 (220)
T ss_pred             CCCccCeECCcchHHHHHHHHHHCC-CcEEEEECccCH-HHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHhhC--
Confidence            5899999999999999999999885 899999998864 455555543   34444444321  22245554444332  


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccc--c--eEEccCCCceeeecCccC-eeeecC-CcccCh
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKA--T--IKEANSESFVVRTLDRKT-LWEMQT-PQVIKP  147 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~--~--~~~~~~~g~v~~~~~r~~-~~~~~~-P~~f~~  147 (210)
                       .+.++++.||.  +....++.+++.+...++  ++.+.+...  .  +...+ +|.+..+.+... -....+ -+.|+.
T Consensus        95 -~~~~lv~~~D~--i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~Giy~~~~  170 (220)
T cd06426          95 -TDPFLVMNGDI--LTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETE-GGRITSIEEKPTHSFLVNAGIYVLEP  170 (220)
T ss_pred             -CCCEEEEcCCE--eeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEC-CCEEEEEEECCCCCCeEEEEEEEEcH
Confidence             45678888994  666788999988776554  233333211  1  11223 355544332111 001111 134454


Q ss_pred             HHHHHHHHHHHhcC-CCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHH
Q 028320          148 DLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE  200 (210)
Q Consensus       148 ~~l~~~~~~~~~~~-~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~  200 (210)
                      ..+.. +.   ..+ +++++....+...|.++...+.+..+.+|+||+||..|+
T Consensus       171 ~~~~~-i~---~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~  220 (220)
T cd06426         171 EVLDL-IP---KNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN  220 (220)
T ss_pred             HHHhh-cC---CCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence            43322 11   112 234443333334566777766666799999999998763

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.37  E-value=6.9e-11  Score=97.13  Aligned_cols=197  Identities=15%  Similarity=0.149  Sum_probs=117.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-------------------------CCcEEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-------------------------NVDLKF   55 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-------------------------~~~v~~   55 (210)
                      +||+++|++|+|||.|+++.+..++ +++|+|+++... +.+.+...+.                         +..+.+
T Consensus        29 ~pK~l~pv~g~pii~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~~  106 (302)
T PRK13389         29 IPKEMLPLVDKPLIQYVVNECIAAG-ITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQ  106 (302)
T ss_pred             CCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccCceEEE
Confidence            5999999999999999999999985 999999999875 3444444320                         112222


Q ss_pred             ecCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCC------CCHHHHHHHHHHHHhcCC-eEEeeecccce--EEc--c
Q 028320           56 SLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPL------VLSKDVQKVLMDALRVGA-AVLGVPAKATI--KEA--N  122 (210)
Q Consensus        56 ~~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pl------i~~~~i~~~i~~~~~~~~-~~~~~~~~~~~--~~~--~  122 (210)
                      +.++  .+..+++..+...+.  .+.++++.+|.++      ++..++.++++.+...++ ++.+.++.++.  ..+  +
T Consensus       107 ~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl~~~~~~~~~~yGvv~~~  184 (302)
T PRK13389        107 VRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCK  184 (302)
T ss_pred             eecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEEEEEEcccCCcceEEEec
Confidence            2221  234677888887764  2456778899987      466899999988766554 34444443321  111  1


Q ss_pred             C-------CCceeeecCccC-----eeeecC-CcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCC
Q 028320          123 S-------ESFVVRTLDRKT-----LWEMQT-PQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYT  186 (210)
Q Consensus       123 ~-------~g~v~~~~~r~~-----~~~~~~-P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~  186 (210)
                      .       ++.+.++.+...     -....+ -++|....| +.+.....   ++++++|....+... .++.....+..
T Consensus       185 ~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~-~~v~~~~~~G~  262 (302)
T PRK13389        185 GVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEK-ETVEAYHMKGK  262 (302)
T ss_pred             CcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHc-CCEEEEEeeeE
Confidence            1       123443332110     011122 245555544 44443221   124455544444333 35655444557


Q ss_pred             CccccChhhHHHHHHHh
Q 028320          187 NIKVTTPDDLLIAERIL  203 (210)
Q Consensus       187 ~~dIdt~~Dl~~a~~~~  203 (210)
                      ++||+||+||..+..-+
T Consensus       263 w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        263 SHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             EEeCCCHHHHHHHHHHH
Confidence            89999999999996654

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.37  E-value=5.7e-11  Score=94.04  Aligned_cols=194  Identities=12%  Similarity=0.172  Sum_probs=115.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh----cCCcEEEecC--CccHHHHHHHHHHccc
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFSLP--GKERQDSVYSGLQEVD   74 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~----~~~~v~~~~~--~~~~~~si~~~l~~~~   74 (210)
                      .||+|+|++|+|||.|+++.+..++ +++|+|++++.. +.+.+.+.+    ++..+.+...  ..+..+++..|...+.
T Consensus        21 ~pK~llpv~g~pli~~~l~~l~~~g-~~~v~iv~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~   98 (233)
T cd06425          21 VPKPLVEFCNKPMIEHQIEALAKAG-VKEIILAVNYRP-EDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLG   98 (233)
T ss_pred             CCCccCeECCcchHHHHHHHHHHCC-CcEEEEEeeeCH-HHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhc
Confidence            4899999999999999999999885 899999999875 345554443    3334433222  2334788999999886


Q ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccC-CCceeeecCc--cCe-eeecC-Cc
Q 028320           75 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANS-ESFVVRTLDR--KTL-WEMQT-PQ  143 (210)
Q Consensus        75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~-~g~v~~~~~r--~~~-~~~~~-P~  143 (210)
                      ...+.++++.||..+  ...++++++.+.+.++  .+.+.+..++    +...++ +|.+....+.  ... ....+ -+
T Consensus        99 ~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy  176 (233)
T cd06425          99 DDDEPFFVLNSDVIC--DFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIY  176 (233)
T ss_pred             cCCCCEEEEeCCEee--CCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEE
Confidence            422346777899753  2346888887766543  4445554332    223343 4566544322  111 11112 24


Q ss_pred             ccChHHHHHHHHHHHhcCCCCC-cHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHh
Q 028320          144 VIKPDLLKKGFELVNREGLEVT-DDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       144 ~f~~~~l~~~~~~~~~~~~~~~-d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~  203 (210)
                      .|+...|.. +..   ....+. +-...+... .++.....+..+.||+|++||..|...+
T Consensus       177 i~~~~~l~~-l~~---~~~~~~~~~~~~l~~~-~~v~~~~~~g~w~digt~~~~~~a~~~~  232 (233)
T cd06425         177 ILNPSVLDR-IPL---RPTSIEKEIFPKMASE-GQLYAYELPGFWMDIGQPKDFLKGMSLY  232 (233)
T ss_pred             EECHHHHHh-ccc---CcccchhhhHHHHHhc-CCEEEEeeCCEEEcCCCHHHHHHHHHHh
Confidence            566555432 221   111111 211122222 3676655556799999999999997754

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.37  E-value=7.5e-11  Score=94.77  Aligned_cols=198  Identities=14%  Similarity=0.212  Sum_probs=117.2

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh----cCCcEEEecCC--ccHHHHHHHHHHccc
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFSLPG--KERQDSVYSGLQEVD   74 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~----~~~~v~~~~~~--~~~~~si~~~l~~~~   74 (210)
                      +||+|+|++|+|||+|+++.+.....+++|+|++++.. +.+.+.+.+    .+..+.++.+.  .+..+++..+...+.
T Consensus        21 ~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~   99 (257)
T cd06428          21 VPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPE-SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQIL   99 (257)
T ss_pred             CCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhh
Confidence            59999999999999999999998324899999998864 445555432    34445444331  223677888888774


Q ss_pred             C-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----eEEcc-CCCceeeecCccC---eeeecC
Q 028320           75 F-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEAN-SESFVVRTLDRKT---LWEMQT  141 (210)
Q Consensus        75 ~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~--~~----~~~~~-~~g~v~~~~~r~~---~~~~~~  141 (210)
                      . +.+.++++.||.++  ..+++.+++.....++  .+.+.++.  ++    +...+ ++|.|..+.++..   -..+.+
T Consensus       100 ~~~~~~~lv~~gD~~~--~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~  177 (257)
T cd06428         100 AGNPSAFFVLNADVCC--DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINC  177 (257)
T ss_pred             ccCCCCEEEEcCCeec--CCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcccceEEE
Confidence            2 24567889999984  3468899988876654  23333331  11    12224 3466655443211   011112


Q ss_pred             -CcccChHHHHHHHHHHHh-----------------cC-CCC-CcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHH
Q 028320          142 -PQVIKPDLLKKGFELVNR-----------------EG-LEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAER  201 (210)
Q Consensus       142 -P~~f~~~~l~~~~~~~~~-----------------~~-~~~-~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~  201 (210)
                       -++|+...| ..+.....                 ++ +.+ +|....+... .++........+.||.|+++|..+.+
T Consensus       178 Giyi~~~~~~-~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~-~~v~~~~~~g~w~dig~~~~~~~a~~  255 (257)
T cd06428         178 GVYLFSPEIF-DTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGS-GKLYVYKTDDFWSQIKTAGSAIYANR  255 (257)
T ss_pred             EEEEECHHHH-HHHhhhccccccccccccccccccccceeeehhhhhhHHhcc-CCEEEecCCCeeecCCCHHHHHhHhh
Confidence             245665554 33332211                 11 112 2322222222 35665555668999999999999987


Q ss_pred             Hh
Q 028320          202 IL  203 (210)
Q Consensus       202 ~~  203 (210)
                      ++
T Consensus       256 ~~  257 (257)
T cd06428         256 LY  257 (257)
T ss_pred             cC
Confidence            53

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.36  E-value=3.3e-11  Score=101.72  Aligned_cols=200  Identities=13%  Similarity=0.108  Sum_probs=117.4

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcE------EEecC-----CccHHHH
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDL------KFSLP-----GKERQDS   65 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v------~~~~~-----~~~~~~s   65 (210)
                      +||+|+|++|| |||+|+++.+.+++ +++|+|++++...+.+.+...+   ++...      .+..+     ++....+
T Consensus        23 ~PKpLlpV~gk~PlIe~~l~~L~~~G-i~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a  101 (369)
T TIGR02092        23 RPLASLPFGGRYRLIDFPLSNMVNAG-IRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKRY  101 (369)
T ss_pred             CcccccccCCeeeEEEEEhhhhhccC-CCEEEEEeCCCcHHHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChHHH
Confidence            59999999999 99999999999986 8999999999752256666642   23221      11111     1123456


Q ss_pred             HHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeecc--cc-----eEEccCCCceeeecC---
Q 028320           66 VYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAK--AT-----IKEANSESFVVRTLD---  132 (210)
Q Consensus        66 i~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~~--~~-----~~~~~~~g~v~~~~~---  132 (210)
                      +..+++.+.. ..+.++++.||.  +...++.++++.....++.  +...++.  ++     +...+++|.+..+..   
T Consensus       102 ~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~  179 (369)
T TIGR02092       102 FSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLN  179 (369)
T ss_pred             HHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCC
Confidence            7777777742 246789999997  6668888999877666553  3333432  11     122233455543211   


Q ss_pred             ccCeeeecC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHHh--CCCCeEEEecCCCCccccChhhHHHHHH-Hhh
Q 028320          133 RKTLWEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVEH--LKHPVYITEGSYTNIKVTTPDDLLIAER-ILN  204 (210)
Q Consensus       133 r~~~~~~~~-P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~--~g~~v~~v~~~~~~~dIdt~~Dl~~a~~-~~~  204 (210)
                      ...-....+ -+.|+...|..++......+. ...-..++..  .+.++.....+..++||+|++||..|+. +++
T Consensus       180 ~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~-~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~  254 (369)
T TIGR02092       180 PEEEENISLDIYIVSTDLLIELLYECIQRGK-LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD  254 (369)
T ss_pred             CCCcceeeeeEEEEEHHHHHHHHHHHhhcCc-cccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhC
Confidence            100011112 245555555554443322221 1111223322  2456655555567899999999999994 443

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.36  E-value=1.8e-11  Score=94.81  Aligned_cols=194  Identities=17%  Similarity=0.148  Sum_probs=115.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEe-CCCChHHHHHHHhhcCCcEEEecC---C-ccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC-DPSYSDIFEETKEKINVDLKFSLP---G-KERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~-~~~~~~~i~~~~~~~~~~v~~~~~---~-~~~~~si~~~l~~~~~   75 (210)
                      +||+|..++|+|+|.|+++++.+.+ +++++||| +... +.+++.+++++....++.+   . +....|+..|.+.+. 
T Consensus        21 ~PK~Lvev~gr~ii~~~i~~L~~~g-i~e~vvV~~g~~~-~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~-   97 (239)
T COG1213          21 IPKALVEVGGREIIYRTIENLAKAG-ITEFVVVTNGYRA-DLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMD-   97 (239)
T ss_pred             CCchhhhcCCeEeHHHHHHHHHHcC-CceEEEEeccchH-HHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhc-
Confidence            5999999999999999999999986 89999999 6665 6778888888766555433   1 122677888888876 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----eEEccCCCceeeecC----ccCeeeecCCcccCh
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVRTLD----RKTLWEMQTPQVIKP  147 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~g~v~~~~~----r~~~~~~~~P~~f~~  147 (210)
                       .+ ++++.+|. +..+..+++++++- ..+.++...|....    .+-..++|.+.++-.    .+..+..  -..+..
T Consensus        98 -~~-fii~~sD~-vye~~~~e~l~~a~-~~~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~~~e~iG--i~~l~~  171 (239)
T COG1213          98 -GR-FILVMSDH-VYEPSILERLLEAP-GEGLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLTEYDGEDIG--IFILSD  171 (239)
T ss_pred             -Cc-EEEEeCCE-eecHHHHHHHHhCc-CCcEEEeccccccccCceeEEEecCCEEehhcCCcccccceeee--eEEech
Confidence             23 56677886 67899999998864 22233333332211    111234566543321    1111100  011222


Q ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEec---CCCCccccChhhHHHHHHHhhc
Q 028320          148 DLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEG---SYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       148 ~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~---~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      +.+...+.......  ..+-..+....+.+...+..   ..-+++||||+|++.|++.+-.
T Consensus       172 ~i~~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~  230 (239)
T COG1213         172 SIFEDTYELLVERS--EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP  230 (239)
T ss_pred             HHHHHHHHHHhhhh--hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence            22222222211110  11123334445555444331   2467899999999999998754

>PRK10122 GalU regulator GalF; Provisional

Probab=99.33  E-value=1.4e-10  Score=95.10  Aligned_cols=195  Identities=15%  Similarity=0.189  Sum_probs=115.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-------------------------cCCcEEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDLKF   55 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-------------------------~~~~v~~   55 (210)
                      +||+|+|++|||||+|+++.+..++ +++|+|++++.. +.+.+....                         ++..+.+
T Consensus        24 ~PK~llpi~gkpiI~~~l~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~  101 (297)
T PRK10122         24 IPKEMLPIVDKPMIQYIVDEIVAAG-IKEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMN  101 (297)
T ss_pred             CCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEcCCCh-HHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEE
Confidence            5999999999999999999999986 899999999865 344443321                         2334455


Q ss_pred             ecC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCH-------HHHHHHHHHHHhcCC-eEEeeecc-cc----eEE
Q 028320           56 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-------KDVQKVLMDALRVGA-AVLGVPAK-AT----IKE  120 (210)
Q Consensus        56 ~~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~-------~~i~~~i~~~~~~~~-~~~~~~~~-~~----~~~  120 (210)
                      +.+  ..+..+++..+...+. +.++++ +.+|. ++++       -++.++++.+...++ ++.+.... ++    +..
T Consensus       102 ~~q~~~lGtg~al~~a~~~l~-~~~fvv-i~gD~-l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~~~yGvv~  178 (297)
T PRK10122        102 VRQGQPLGLGHSILCARPAIG-DNPFVV-VLPDV-VIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQ  178 (297)
T ss_pred             eecCCcCchHHHHHHHHHHcC-CCCEEE-EECCe-eccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCCCCceEEE
Confidence            433  1234788999999984 335554 45887 6654       368999988876654 33333321 11    112


Q ss_pred             cc----CCCc---eeeecCc--------cCeeeecC-CcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEE
Q 028320          121 AN----SESF---VVRTLDR--------KTLWEMQT-PQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYIT  181 (210)
Q Consensus       121 ~~----~~g~---v~~~~~r--------~~~~~~~~-P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v  181 (210)
                      .+    .+|.   |.++.+.        +..  ..+ -++|....|.. +.....   ..++++|....+... .++...
T Consensus       179 ~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~--~~~GiYi~~~~i~~~-l~~~~~~~~~e~~ltd~i~~l~~~-~~v~~~  254 (297)
T PRK10122        179 TKEPLDREGKVSRIVEFIEKPDQPQTLDSDL--MAVGRYVLSADIWPE-LERTEPGAWGRIQLTDAIAELAKK-QSVDAM  254 (297)
T ss_pred             ecCcccCCCCeeeEEEEEECCCCcccCCccE--EEEEEEEECHHHHHH-HHhCCCCCCCeeeHHHHHHHHHhC-CCEEEE
Confidence            22    2342   3332221        111  112 24555554333 332111   123456544444333 356555


Q ss_pred             ecCCCCccccChhhHHHHHHHhh
Q 028320          182 EGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       182 ~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      .....++||.||+|+..+..-+.
T Consensus       255 ~~~G~w~DiG~p~~~~~a~~~~~  277 (297)
T PRK10122        255 LMTGDSYDCGKKMGYMQAFVKYG  277 (297)
T ss_pred             EeCCEEEcCCCHHHHHHHHHHHH
Confidence            44557899999999999887653

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.33  E-value=8.5e-11  Score=92.82  Aligned_cols=193  Identities=13%  Similarity=0.121  Sum_probs=109.2

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh--HHHHHHHhhc--CCcEEEec-CCccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKI--NVDLKFSL-PGKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~--~~i~~~~~~~--~~~v~~~~-~~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|+|||+|+++.+.+++ +++++|+++.+..  ..+.+.....  +..+.+.. ...+..+++..|+..+..
T Consensus        19 ~pK~ll~i~g~pli~~~l~~l~~~g-~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~l~~a~~~l~~   97 (231)
T cd04183          19 YPKPLIEVDGKPMIEWVIESLAKIF-DSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDGETLGAACTVLLAADLIDN   97 (231)
T ss_pred             CCceeeEECCEEHHHHHHHhhhccC-CceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHHHhhcCC
Confidence            4999999999999999999999886 8999999975432  1222222222  23333322 233458889999888742


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc---eEEccCCCceeeecCccCe--eeecCCcccChH
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT---IKEANSESFVVRTLDRKTL--WEMQTPQVIKPD  148 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~---~~~~~~~g~v~~~~~r~~~--~~~~~P~~f~~~  148 (210)
                       .+.++++.||. +.+. .+..++..+...+  +.+.+.+...+   ....+++|.+..+.+....  +..-.-+.|...
T Consensus        98 -~~~~lv~~~D~-i~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~Giy~~~~~  174 (231)
T cd04183          98 -DDPLLIFNCDQ-IVES-DLLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDENGRVIETAEKEPISDLATAGLYYFKSG  174 (231)
T ss_pred             -CCCEEEEecce-eecc-CHHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCCCCEEEeEEcCCCCCccEeEEEEECcH
Confidence             35678899998 4444 4656666554433  23333332211   1223445666544322110  000112344443


Q ss_pred             -HHHHHHHHHH-----h-cCCCCCcHHHHHHhCCCCeEEEec-CCCCccccChhhHH
Q 028320          149 -LLKKGFELVN-----R-EGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLL  197 (210)
Q Consensus       149 -~l~~~~~~~~-----~-~~~~~~d~~~~~~~~g~~v~~v~~-~~~~~dIdt~~Dl~  197 (210)
                       .+.+.+....     . ..+++++....+...|.++..... ...+.+|+||+||+
T Consensus       175 ~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~  231 (231)
T cd04183         175 SLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE  231 (231)
T ss_pred             HHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence             3333333211     1 113445544444456667776655 46789999999984

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.32  E-value=9.7e-11  Score=100.17  Aligned_cols=199  Identities=13%  Similarity=0.109  Sum_probs=120.3

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cC---CcEEEe---cC--------CccHHH
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN---VDLKFS---LP--------GKERQD   64 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~---~~v~~~---~~--------~~~~~~   64 (210)
                      +||+|+|++|| |||+|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++   ....++   ..        ..+..+
T Consensus        26 ~PK~llPv~gk~plI~~~L~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta~  103 (407)
T PRK00844         26 RAKPAVPFGGSYRLIDFVLSNLVNSG-YLRIYVLTQYKS-HSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGSAD  103 (407)
T ss_pred             CcccceeeCCcceEhHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHHhCcCccccCCCeEEECCcccCCCCCcccCCHH
Confidence            59999999999 99999999999986 999999999876 455655532 21   111111   11        123478


Q ss_pred             HHHHHHHcccCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeec--ccc----eEEccCCCceeeecCccC
Q 028320           65 SVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPA--KAT----IKEANSESFVVRTLDRKT  135 (210)
Q Consensus        65 si~~~l~~~~~~-~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~--~~~----~~~~~~~g~v~~~~~r~~  135 (210)
                      +++.++..+..+ .++++++.||.  +...++.++++.....++.  +.+..+  .++    +...+++|.+..+.++..
T Consensus       104 al~~a~~~i~~~~~~~~lv~~gD~--v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~  181 (407)
T PRK00844        104 AIYQSLNLIEDEDPDYVVVFGADH--VYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPA  181 (407)
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEECCC
Confidence            899898888532 36788999997  5567889999887766542  222222  121    222344566654432210


Q ss_pred             ----------eeeecC-CcccChHHHHHHHHHHHhc--C-CCC-CcHHHHHHhCCCCeEEEec------------CCCCc
Q 028320          136 ----------LWEMQT-PQVIKPDLLKKGFELVNRE--G-LEV-TDDVSIVEHLKHPVYITEG------------SYTNI  188 (210)
Q Consensus       136 ----------~~~~~~-P~~f~~~~l~~~~~~~~~~--~-~~~-~d~~~~~~~~g~~v~~v~~------------~~~~~  188 (210)
                                .....+ -++|+...|...+......  + .++ +|-...+...+ ++.....            ...+.
T Consensus       182 ~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~-~v~~~~~~~~~~~g~n~~~~g~w~  260 (407)
T PRK00844        182 DPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERG-RAYVYDFSTNEVPGATERDRGYWR  260 (407)
T ss_pred             CcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccC-eEEEEEcccccccccccCCCCEEE
Confidence                      112222 2566766665555432211  1 223 34333333334 4443322            24589


Q ss_pred             cccChhhHHHHHHHhh
Q 028320          189 KVTTPDDLLIAERILN  204 (210)
Q Consensus       189 dIdt~~Dl~~a~~~~~  204 (210)
                      ||.|++||..+...+-
T Consensus       261 Digt~~~y~~a~~~lL  276 (407)
T PRK00844        261 DVGTIDAYYDAHMDLL  276 (407)
T ss_pred             ECCCHHHHHHHHHHHh
Confidence            9999999999987654

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.26  E-value=1.8e-10  Score=89.20  Aligned_cols=105  Identities=15%  Similarity=0.230  Sum_probs=77.5

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCc-----EEEec--------CCccHH
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVD-----LKFSL--------PGKERQ   63 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~-----v~~~~--------~~~~~~   63 (210)
                      .||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+...+   ++..     +.++.        ...+..
T Consensus        19 ~pK~llpv~g~~pli~~~l~~l~~~g-i~~iivv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta   96 (200)
T cd02508          19 RAKPAVPFGGRYRLIDFPLSNMVNSG-IRNVGVLTQYKS-RSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTA   96 (200)
T ss_pred             CcceeeEECCeeeeHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccCcH
Confidence            59999999999 99999999999985 899999999986 455555543   1111     22222        112347


Q ss_pred             HHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320           64 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV  109 (210)
Q Consensus        64 ~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~  109 (210)
                      ++++.|...+.. +.+.++++.||+  +....+.++++.+...++.+
T Consensus        97 ~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~~~~~  141 (200)
T cd02508          97 DAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIESGADI  141 (200)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCE
Confidence            889999988853 346788999999  67788999998877665533

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.25  E-value=2.3e-10  Score=98.51  Aligned_cols=197  Identities=13%  Similarity=0.070  Sum_probs=118.9

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC-----c-EEEe--cCC-------ccHH
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-----D-LKFS--LPG-------KERQ   63 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~-----~-v~~~--~~~-------~~~~   63 (210)
                      +||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. +..     . +...  .+.       .+..
T Consensus        24 ~PK~Llpi~gk~plI~~~L~~l~~~G-i~~vivv~~~~~-~~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~lGTa  101 (429)
T PRK02862         24 RAKPAVPLAGKYRLIDIPISNCINSG-INKIYVLTQFNS-ASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQGTA  101 (429)
T ss_pred             CcceeeEECCeeEEeHHHHHHHHHCC-CCEEEEEecCCH-HHHHHHHhcCcCccccCCCEEEEeCCcccCCCCccccCcH
Confidence            59999999999 99999999999986 899999999865 445555542 110     0 1111  110       2347


Q ss_pred             HHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeecc--cc----eEEccCCCceeeecCcc
Q 028320           64 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAK--AT----IKEANSESFVVRTLDRK  134 (210)
Q Consensus        64 ~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~~--~~----~~~~~~~g~v~~~~~r~  134 (210)
                      ++++.++..+.. +.+.++++.||. +. ..+++.+++.+.+.++.  +.+.++.  ++    +...+++|.+..+.+..
T Consensus       102 ~al~~a~~~l~~~~~~~~lVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp  179 (429)
T PRK02862        102 DAVRKYLWHFQEWDVDEYLILSGDQ-LY-RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKP  179 (429)
T ss_pred             HHHHHHHHHHHhcCCCEEEEecCCE-EE-eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEECC
Confidence            889999888853 246789999999 44 47888999877666552  3333332  11    12234456665443211


Q ss_pred             C------------------------eeeecC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCCC
Q 028320          135 T------------------------LWEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYTN  187 (210)
Q Consensus       135 ~------------------------~~~~~~-P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~~~  187 (210)
                      .                        .+.+.+ -++|....|..++.... ....+..  .++.  ..+.++.....+..+
T Consensus       180 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~--dil~~l~~~~~v~~~~~~g~w  256 (429)
T PRK02862        180 KGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGK--EIIPEAIRDYKVQSYLFDGYW  256 (429)
T ss_pred             CccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHH--HHHHHHhccCcEEEEEeCCEE
Confidence            0                        112222 25566666655544321 0011111  2221  234566655556679


Q ss_pred             ccccChhhHHHHHHHhh
Q 028320          188 IKVTTPDDLLIAERILN  204 (210)
Q Consensus       188 ~dIdt~~Dl~~a~~~~~  204 (210)
                      .||+|+++|..++..+.
T Consensus       257 ~digt~~~y~~an~~l~  273 (429)
T PRK02862        257 EDIGTIEAFYEANLALT  273 (429)
T ss_pred             EeCCCHHHHHHHHHHHH
Confidence            99999999999987765

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.23  E-value=4.7e-10  Score=94.41  Aligned_cols=200  Identities=16%  Similarity=0.130  Sum_probs=118.5

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC------cEEEec------C---CccHH
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV------DLKFSL------P---GKERQ   63 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~------~v~~~~------~---~~~~~   63 (210)
                      .||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++.      .+.+..      .   ..+..
T Consensus        19 ~pK~llpv~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~   96 (361)
T TIGR02091        19 RAKPAVPFGGKYRIIDFPLSNCINSG-IRRIGVLTQYKS-HSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTA   96 (361)
T ss_pred             CccccceecceeeEeeehhhhhhhcC-CceEEEEeccCh-HHHHHHHHhccCccCccCCCEEEeCCcccCCCCccccCcH
Confidence            59999999999 89999999999986 899999999876 445555542 221      122221      0   02236


Q ss_pred             HHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----eEEccCCCceeeecCc-
Q 028320           64 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVRTLDR-  133 (210)
Q Consensus        64 ~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~--~~----~~~~~~~g~v~~~~~r-  133 (210)
                      ++++.++..+.. +.+.++++.||+  +....+.++++.+...++  .+.+.++.  ++    +...+++|.+..+.+. 
T Consensus        97 ~al~~a~~~~~~~~~~~~lv~~gD~--l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp  174 (361)
T TIGR02091        97 DAVYQNLDLIEDYDPEYVLILSGDH--IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKP  174 (361)
T ss_pred             HHHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEECC
Confidence            888889888853 346788899998  556678888887765544  33333331  11    2233445556543321 


Q ss_pred             ----cC-----eeeecC-CcccChHHHHHHHHHHHhcC---CCC-CcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320          134 ----KT-----LWEMQT-PQVIKPDLLKKGFELVNREG---LEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA  199 (210)
Q Consensus       134 ----~~-----~~~~~~-P~~f~~~~l~~~~~~~~~~~---~~~-~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a  199 (210)
                          +.     .+...+ -+.|....|...+......+   ..+ ++....+... .++.....+..+.||+|++||..|
T Consensus       175 ~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~-~~v~~~~~~~~w~digt~~~~~~a  253 (361)
T TIGR02091       175 ANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEE-GSVQAYLFSGYWRDVGTIDSFWEA  253 (361)
T ss_pred             CCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhc-CceEEEeeCCEEEECCCHHHHHHH
Confidence                11     001222 24566655555444322211   111 2222222222 356655555678999999999999


Q ss_pred             HHHhhc
Q 028320          200 ERILNL  205 (210)
Q Consensus       200 ~~~~~~  205 (210)
                      ...+-.
T Consensus       254 ~~~~l~  259 (361)
T TIGR02091       254 NMDLVS  259 (361)
T ss_pred             HHHHhC
Confidence            776554

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.23  E-value=1.1e-09  Score=94.10  Aligned_cols=199  Identities=15%  Similarity=0.114  Sum_probs=119.9

Q ss_pred             CCccceecCCee-hHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC-------cEEEec--C-------CccH
Q 028320            1 MPKQYLPLLGQP-IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-------DLKFSL--P-------GKER   62 (210)
Q Consensus         1 ~~K~l~~i~gkp-li~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~-------~v~~~~--~-------~~~~   62 (210)
                      +||+|+|++|+| ||+|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++.       .+.+..  .       ..+.
T Consensus        36 ~PK~llpv~gkp~lI~~~l~~l~~~G-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lGT  113 (425)
T PRK00725         36 RAKPAVYFGGKFRIIDFALSNCINSG-IRRIGVLTQYKA-HSLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENWYRGT  113 (425)
T ss_pred             CcceeEEECCEEEEhHHHHHHHHHCC-CCeEEEEecCCH-HHHHHHHHhhhcccccCCCCeEEEeCCcccCCCCccccCc
Confidence            599999999997 9999999999985 899999999876 445554432 210       111111  0       0234


Q ss_pred             HHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----eEEccCCCceeeecCc
Q 028320           63 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLDR  133 (210)
Q Consensus        63 ~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~--~~~----~~~~~~~g~v~~~~~r  133 (210)
                      .++++.++..++. ..+.++++.||.  +...++.++++.+...++  .+.+.++  .++    ....+++|.+..+.++
T Consensus       114 a~al~~a~~~l~~~~~d~~lVl~gD~--l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~EK  191 (425)
T PRK00725        114 ADAVYQNLDIIRRYDPKYVVILAGDH--IYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEK  191 (425)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCe--EeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEEC
Confidence            7888999888853 247789999998  556789999988776655  3333232  221    2223445666544432


Q ss_pred             cC----------eeeecC-CcccChHHHHHHHHHHHhc--C-CCC-CcHHHHHHhCCCCeEEEec-----------CCCC
Q 028320          134 KT----------LWEMQT-PQVIKPDLLKKGFELVNRE--G-LEV-TDDVSIVEHLKHPVYITEG-----------SYTN  187 (210)
Q Consensus       134 ~~----------~~~~~~-P~~f~~~~l~~~~~~~~~~--~-~~~-~d~~~~~~~~g~~v~~v~~-----------~~~~  187 (210)
                      ..          .....+ -++|+...|..++......  + .++ +|-...+...+ ++.....           +..+
T Consensus       192 p~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~-~v~~~~~~g~~~~~~~~~~gyw  270 (425)
T PRK00725        192 PANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG-KVYAHPFSDSCVRSDPEEEPYW  270 (425)
T ss_pred             CCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC-cEEEEEecCCccccccccCCeE
Confidence            10          122222 2567777666555432211  1 222 33333232233 4443222           2468


Q ss_pred             ccccChhhHHHHHHHhh
Q 028320          188 IKVTTPDDLLIAERILN  204 (210)
Q Consensus       188 ~dIdt~~Dl~~a~~~~~  204 (210)
                      .||.|+++|..+...+-
T Consensus       271 ~digt~~~y~~an~~ll  287 (425)
T PRK00725        271 RDVGTLDAYWQANLDLA  287 (425)
T ss_pred             EECCCHHHHHHHHHHHc
Confidence            99999999999987654

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.22  E-value=9.3e-10  Score=85.73  Aligned_cols=125  Identities=18%  Similarity=0.245  Sum_probs=85.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|+|||.|+++.+..++ +++|+|++++.. +.+.+.+.+   ++..+.++.+  ..+..+++..+++.+. 
T Consensus        19 ~pK~ll~v~g~pli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~-   95 (217)
T cd04181          19 RPKPLLPIAGKPILEYIIERLARAG-IDEIILVVGYLG-EQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLG-   95 (217)
T ss_pred             CCccccEECCeeHHHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhcC-
Confidence            4899999999999999999999986 899999999864 456665554   3445555433  2345788999998883 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccCCCceeeec
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTL  131 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~~g~v~~~~  131 (210)
                       .+.++++.||+- . ...+..+++.+...++  .+.+.+..++    ....+++|.+..+.
T Consensus        96 -~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~  154 (217)
T cd04181          96 -DDDFLVVNGDVL-T-DLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFV  154 (217)
T ss_pred             -CCCEEEEECCee-c-CcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCCCcEEEEE
Confidence             467899999984 3 4457777776665543  4444444322    12234446665443

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.20  E-value=7.5e-10  Score=95.53  Aligned_cols=201  Identities=12%  Similarity=0.032  Sum_probs=121.0

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-c--CCc-------EEE--ecC-------Cc
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-I--NVD-------LKF--SLP-------GK   60 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~--~~~-------v~~--~~~-------~~   60 (210)
                      +||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+++ +  +..       +.+  ..+       ..
T Consensus        24 ~PK~llpv~g~~plId~~L~~l~~~G-i~~i~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~l  101 (436)
T PLN02241         24 RAKPAVPIGGNYRLIDIPMSNCINSG-INKIYVLTQFNS-ASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKGWFQ  101 (436)
T ss_pred             CcccceEeCCcceEehHHHHHHHhCC-CCEEEEEeccCH-HHHHHHHhccCCCCCCcccCCCCEEEcCCcccCCCCcccc
Confidence            59999999997 99999999999985 899999999875 455555543 1  100       111  111       11


Q ss_pred             cHHHHHHHHHHcccCC----CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeeccc------ceEEccCCCcee
Q 028320           61 ERQDSVYSGLQEVDFN----SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKA------TIKEANSESFVV  128 (210)
Q Consensus        61 ~~~~si~~~l~~~~~~----~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~~~------~~~~~~~~g~v~  128 (210)
                      +..++++.++..++..    .+.++++.||.  +...++.++++...+.++.  +...++..      .+...+++|.+.
T Consensus       102 Gt~~al~~~~~~~~~~~~~~~~~~lv~~gD~--v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v~  179 (436)
T PLN02241        102 GTADAVRQFLWLFEDAKNKNVEEVLILSGDH--LYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRII  179 (436)
T ss_pred             CcHHHHHHHHHHHHhcccCCCCEEEEecCCe--EEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCEE
Confidence            2357777776655421    36788899998  4456899999888776663  23333321      122234456665


Q ss_pred             eecCc---cC---------------------eeeecC-CcccChHHHHHHHHHHHhcCCC-CCcHHHHHHhCCCCeEEEe
Q 028320          129 RTLDR---KT---------------------LWEMQT-PQVIKPDLLKKGFELVNREGLE-VTDDVSIVEHLKHPVYITE  182 (210)
Q Consensus       129 ~~~~r---~~---------------------~~~~~~-P~~f~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~v~~v~  182 (210)
                      ++.+.   ..                     .....+ -+.|..+.|..+++........ ..|....+...|.++....
T Consensus       180 ~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~~~  259 (436)
T PLN02241        180 EFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAYL  259 (436)
T ss_pred             EEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEEEe
Confidence            43321   10                     012222 2456666665555433211111 2233333344566777655


Q ss_pred             cCCCCccccChhhHHHHHHHhhc
Q 028320          183 GSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       183 ~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      .+..+.||++++||..+...+-.
T Consensus       260 ~~gyw~dIg~~~~y~~a~~~~l~  282 (436)
T PLN02241        260 FDGYWEDIGTIKSFYEANLALTK  282 (436)
T ss_pred             eCCEEEECCCHHHHHHHHHHHhc
Confidence            55689999999999999987653

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.09  E-value=1e-09  Score=85.86  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=76.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC------CcEEEecC--CccHHHHHHHHHHc
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN------VDLKFSLP--GKERQDSVYSGLQE   72 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~------~~v~~~~~--~~~~~~si~~~l~~   72 (210)
                      .||+|+|++|+|||+|+++.+.+++ +++|+|+++++..+.+++.++++.      ..+.+...  ..+..++++.+...
T Consensus        21 ~pK~Llpv~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~   99 (214)
T cd04198          21 IPKALLPVANKPMIWYPLDWLEKAG-FEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKK   99 (214)
T ss_pred             CCcccCEECCeeHHHHHHHHHHHCC-CCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHhh
Confidence            4899999999999999999999875 899999999765445666666541      12222222  22347888888877


Q ss_pred             ccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEE
Q 028320           73 VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL  110 (210)
Q Consensus        73 ~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~  110 (210)
                      +.  .+ ++++.||  ++....+..+++.+...++.++
T Consensus       100 i~--~d-~lv~~~D--~i~~~~l~~~l~~h~~~~~~~t  132 (214)
T cd04198         100 IK--KD-FLVLSCD--LITDLPLIELVDLHRSHDASLT  132 (214)
T ss_pred             cC--CC-EEEEeCc--cccccCHHHHHHHHhccCCcEE
Confidence            63  34 6777899  7888999999998877665443

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.06  E-value=2.7e-09  Score=86.64  Aligned_cols=102  Identities=16%  Similarity=0.191  Sum_probs=74.9

Q ss_pred             CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccC--
Q 028320            1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDF--   75 (210)
Q Consensus         1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~--   75 (210)
                      +||+|++++| +|||+|+++++...+.+++|+|+|+......+++.++..+..+.++  +...+...++..|+..+..  
T Consensus        22 ~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~~~~~  101 (274)
T cd02509          22 YPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEPEGRNTAPAIALAALYLAKRD  101 (274)
T ss_pred             CCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHHHhcC
Confidence            5999999999 9999999999998855899999999765445555555422233333  2233447788888777642  


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHH
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDA  102 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~  102 (210)
                      ..+.++++.+|+++.+...+.++++..
T Consensus       102 ~~~~vlVl~~D~~i~~~~~f~~~l~~~  128 (274)
T cd02509         102 PDAVLLVLPSDHLIEDVEAFLKAVKKA  128 (274)
T ss_pred             CCCeEEEecchhcccCHHHHHHHHHHH
Confidence            346899999999998887777776543

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.94  E-value=9.8e-08  Score=77.32  Aligned_cols=196  Identities=13%  Similarity=0.141  Sum_probs=116.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC----CcEEEecC-----CccHHHHHHHHHH
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN----VDLKFSLP-----GKERQDSVYSGLQ   71 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~----~~v~~~~~-----~~~~~~si~~~l~   71 (210)
                      +||++.|++++|||.|.++++..++ +++|++.+............+.|+    +++.+..+     .++..+.++..|.
T Consensus        30 ~pKPlVpfgn~pmI~hqieal~nsG-i~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~  108 (371)
T KOG1322|consen   30 RPKPLVPFGNKPMILHQIEALINSG-ITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLW  108 (371)
T ss_pred             CCCcccccCcchhhHHHHHHHHhCC-CcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhh
Confidence            5899999999999999999999996 999999999987434555666554    34433322     2223444454443


Q ss_pred             cccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccceEE----ccC-CCceeeecCc-cCeeeec---
Q 028320           72 EVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATIKE----ANS-ESFVVRTLDR-KTLWEMQ---  140 (210)
Q Consensus        72 ~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~----~~~-~g~v~~~~~r-~~~~~~~---  140 (210)
                      ..+ +. .++++.+|.  +-.-.+.++++....+++  .+.+.++.++.++    .++ .|.|.+.++. ..+...+   
T Consensus       109 ~~~-~~-~ffVLnsDv--i~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~F~EKPkd~vsnkina  184 (371)
T KOG1322|consen  109 VFE-DA-PFFVLNSDV--ICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINA  184 (371)
T ss_pred             hcC-CC-cEEEecCCe--eecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeEehhCchhhhhccccc
Confidence            332 11 455555542  222335788888877765  6778888776332    344 6777665542 2222111   


Q ss_pred             CCcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          141 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       141 ~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      .-++|....|.+......+    +..+..-....++++..-..+..+.||-+|.|+-.+-.++-+
T Consensus       185 GiYi~~~~vL~ri~~~ptS----iekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~  245 (371)
T KOG1322|consen  185 GIYILNPEVLDRILLRPTS----IEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLR  245 (371)
T ss_pred             eEEEECHHHHhHhhhcccc----hhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHh
Confidence            1245665555554322111    111111112234556554555689999999999988777653

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.91  E-value=8.2e-08  Score=83.52  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=71.1

Q ss_pred             CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcE-EEecC--CccHHHHHHHHHHccc--
Q 028320            1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDL-KFSLP--GKERQDSVYSGLQEVD--   74 (210)
Q Consensus         1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v-~~~~~--~~~~~~si~~~l~~~~--   74 (210)
                      +||||+++.| +|||+|+++++...+ +++++|||+......+.+.++.++.+. .++..  ..+...++..|...+.  
T Consensus        22 ~PK~~l~l~g~~~ll~~tl~~l~~~~-~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~  100 (468)
T TIGR01479        22 YPKQFLALVGDLTMLQQTLKRLAGLP-CSSPLVICNEEHRFIVAEQLREIGKLASNIILEPVGRNTAPAIALAALLAARR  100 (468)
T ss_pred             CCCceeEcCCCCcHHHHHHHHHhcCC-CcCcEEecCHHHHHHHHHHHHHcCCCcceEEecccccCchHHHHHHHHHHHHH
Confidence            4999999976 899999999998875 789999998765445666666665332 23221  2223455554444442  


Q ss_pred             -CCCCEEEEEeCCCCCCCHHHHHHHHHHH
Q 028320           75 -FNSELVCIHDSARPLVLSKDVQKVLMDA  102 (210)
Q Consensus        75 -~~~d~vl~~~~d~Pli~~~~i~~~i~~~  102 (210)
                       ...+.++++.+|+|+.+.+.+.++++.+
T Consensus       101 ~~~~~~vlVl~~D~~i~~~~~f~~~l~~~  129 (468)
T TIGR01479       101 NGEDPLLLVLAADHVITDEDAFQAAVKLA  129 (468)
T ss_pred             HCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence             1246789999999999988888888764

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=98.82  E-value=3.9e-07  Score=72.41  Aligned_cols=193  Identities=15%  Similarity=0.136  Sum_probs=121.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHH----------H------------hhc--CCcEEEe
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET----------K------------EKI--NVDLKFS   56 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~----------~------------~~~--~~~v~~~   56 (210)
                      +||-++|+-+||+|+|+++.+.+++ +++|++||+.... .|.+.          +            ++.  ++.+.++
T Consensus        25 iPKEMLPIvdKP~IqYiVeEa~~aG-Ie~i~iVTgr~K~-~IeDhFD~s~ELE~~L~~~~K~~~L~~v~~i~~~~~i~~v  102 (291)
T COG1210          25 IPKEMLPIVDKPLIQYIVEEAVAAG-IEEILIVTGRGKR-AIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFV  102 (291)
T ss_pred             CchhhccccCchhHHHHHHHHHHcC-CCEEEEEecCCcc-hHHHhCcCcHHHHHHHHHhCHHHHHHHHHhcccCceEEEE
Confidence            5999999999999999999999997 9999999998631 12111          1            111  1234566


Q ss_pred             cCCc--cHHHHHHHHHHcccCCCCEEEEEeCCCCCCC-HHHHHHHHHHHHhcCC-eEEeeecc--cc--eEEcc-----C
Q 028320           57 LPGK--ERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGA-AVLGVPAK--AT--IKEAN-----S  123 (210)
Q Consensus        57 ~~~~--~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~-~~~i~~~i~~~~~~~~-~~~~~~~~--~~--~~~~~-----~  123 (210)
                      .+..  +..+++..|=.++.  .+.+.++.+|.=+.+ +..+.+|++.++.+++ ++.+.++.  +.  +..++     .
T Consensus       103 RQ~e~~GLGhAVl~A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~~g~~~~  180 (291)
T COG1210         103 RQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVIDPGEPVE  180 (291)
T ss_pred             ecCCCCcchhHHHhhhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEecCcccc
Confidence            5533  34788988888886  455666777776665 7899999999998876 55555553  11  11111     1


Q ss_pred             CC--ceeeec-------CccCeee----ecCCcccChHHHHHHHHHH--HhcC-CCCCcHHHHHHhCCCCeEEEecCCCC
Q 028320          124 ES--FVVRTL-------DRKTLWE----MQTPQVIKPDLLKKGFELV--NREG-LEVTDDVSIVEHLKHPVYITEGSYTN  187 (210)
Q Consensus       124 ~g--~v~~~~-------~r~~~~~----~~~P~~f~~~~l~~~~~~~--~~~~-~~~~d~~~~~~~~g~~v~~v~~~~~~  187 (210)
                      ++  .+...+       .+|++..    +.+|.+|.      .++..  +..| +.+||....+... ..+.........
T Consensus       181 ~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd------~L~~~~~G~ggEiQLTDai~~L~~~-~~v~a~~~~Gkr  253 (291)
T COG1210         181 KGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFD------ILEETKPGAGGEIQLTDAIKKLLKK-EPVLAYVFEGKR  253 (291)
T ss_pred             CCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHH------HHhhCCCCCCCEeeHHHHHHHHHhh-CcEEEEEecccE
Confidence            22  222222       2455432    34555543      34332  1122 5678875555443 455555555678


Q ss_pred             ccccChhhHHHHHHHhh
Q 028320          188 IKVTTPDDLLIAERILN  204 (210)
Q Consensus       188 ~dIdt~~Dl~~a~~~~~  204 (210)
                      +|+.++..|..+.--+.
T Consensus       254 yD~G~k~Gyi~a~v~~~  270 (291)
T COG1210         254 YDCGSKLGYIKANVEFA  270 (291)
T ss_pred             EccCCcccHHHHHHHHH
Confidence            99999999988765443

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=98.80  E-value=6.8e-08  Score=75.68  Aligned_cols=97  Identities=19%  Similarity=0.218  Sum_probs=65.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC--------CcEEEecCCc--cHHHHHHHH-
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--------VDLKFSLPGK--ERQDSVYSG-   69 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~--------~~v~~~~~~~--~~~~si~~~-   69 (210)
                      +||+|+|++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+++..        ..+.++.+..  +..+++... 
T Consensus        21 ~pK~llpi~g~piI~~~l~~l~~~G-i~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~~~   98 (217)
T cd04197          21 KPRCLLPLANVPLIDYTLEFLALNG-VEEVFVFCCSHS-DQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLD   98 (217)
T ss_pred             CCceeeEECCEehHHHHHHHHHHCC-CCeEEEEeCCCH-HHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHHHh
Confidence            5999999999999999999999986 899999999764 56777665531        2344443311  123333221 


Q ss_pred             -HHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           70 -LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        70 -l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                       ...+   .+.++++.||.  +....+..+++.+.+
T Consensus        99 ~~~~~---~~~flv~~gD~--i~~~dl~~~l~~h~~  129 (217)
T cd04197          99 AKGLI---RGDFILVSGDV--VSNIDLKEILEEHKE  129 (217)
T ss_pred             hcccc---CCCEEEEeCCe--eeccCHHHHHHHHHH
Confidence             1112   23467888995  556788899988765

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis

Probab=98.78  E-value=3.5e-08  Score=76.82  Aligned_cols=147  Identities=16%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCC
Q 028320           12 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV   90 (210)
Q Consensus        12 pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli   90 (210)
                      -|+.+|+.++..   ++ ++||+.++..   .+... .+|+.+..- ++.+...++..|+...  ..+.++++.+|.|++
T Consensus        32 aMl~Dvl~al~~---v~-v~vVs~d~~v---~~~a~~~~g~~vl~d-~~~gLN~Al~~a~~~~--~~~~vlvl~aDLPll  101 (217)
T PF01983_consen   32 AMLRDVLAALRA---VD-VVVVSRDPEV---AALARARLGAEVLPD-PGRGLNAALNAALAAA--GDDPVLVLPADLPLL  101 (217)
T ss_dssp             HHHHHHHHHHHH----S-EEEEES--S----TTTTT---SSEEEE----S-HHHHHHHHHH-H----S-EEEE-S--TT-
T ss_pred             HHHHHHHHHHHh---cC-eEEeccchhh---hhhhhhccCCeEecC-CCCCHHHHHHHHHhcc--CCCceEEeecCCccC
Confidence            488999999976   57 8888877653   23333 456554322 2244455666664332  357789999999999


Q ss_pred             CHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccC----hHHHHHHHHHHHhcCCCCCc
Q 028320           91 LSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIK----PDLLKKGFELVNREGLEVTD  166 (210)
Q Consensus        91 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~----~~~l~~~~~~~~~~~~~~~d  166 (210)
                      +++.|+.++......+  +.++|-.+       +|        ++..... |..|+    ...+.              .
T Consensus       102 ~~~dl~~~l~~~~~~~--vviap~r~-------gG--------TN~L~~~-~~~~~~~fg~~S~~--------------~  149 (217)
T PF01983_consen  102 TPEDLDALLAAAGRAD--VVIAPDRG-------GG--------TNALLLR-PDAFPFRFGGGSFA--------------R  149 (217)
T ss_dssp             -HHHHHHHCT-SS--S--EEEEE-GG-------G---------EEEEEES-CCC-----SSSHHH--------------H
T ss_pred             CHHHHHHHHhccCCCC--EEEeCCCC-------CC--------eEEEEec-CCCCCCCcChhHHH--------------H
Confidence            9999999997654332  33344321       22        1111111 33322    22221              1


Q ss_pred             HHHHHHhCCCCeEEEecCCCCccccChhhHHHHH
Q 028320          167 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE  200 (210)
Q Consensus       167 ~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~  200 (210)
                      .....+..|..+.++....-.+|||||+||..+-
T Consensus       150 H~~~A~~~gl~~~v~~s~~l~~DVDtp~DL~ell  183 (217)
T PF01983_consen  150 HLRAARERGLSVAVVDSFRLALDVDTPEDLAELL  183 (217)
T ss_dssp             HHHHHHCTT--EEE---TTTT----SCCHHHHHH
T ss_pred             HHHHHHHCCCeEEEEccCceeecCCCHHHHHHHH
Confidence            2334445677777777777899999999998653

One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=98.67  E-value=1.8e-07  Score=73.30  Aligned_cols=94  Identities=18%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hc------CCcE--EEecC--CccHHHHHHHH
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KI------NVDL--KFSLP--GKERQDSVYSG   69 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~------~~~v--~~~~~--~~~~~~si~~~   69 (210)
                      .||+|+|++|+|||.|+++.+.+++ +++|+|+++++.. .+.+.+. .+      +..+  .+..+  ..+...++..+
T Consensus        21 ~pK~llpv~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~~   98 (216)
T cd02507          21 IPKALLPVANVPLIDYTLEWLEKAG-VEEVFVVCCEHSQ-AIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDI   98 (216)
T ss_pred             CCcccceECCEEHHHHHHHHHHHCC-CCeEEEEeCCcHH-HHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHHH
Confidence            4899999999999999999999886 8999999998863 3333333 22      1112  22222  22236677777


Q ss_pred             HHcccCCCCEEEEEeCCCCCCCHHHHHHHHHH
Q 028320           70 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMD  101 (210)
Q Consensus        70 l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~  101 (210)
                      ...+.  .+ ++++.||  ++..-.+..+++.
T Consensus        99 ~~~i~--~d-flv~~gD--~i~~~~l~~~l~~  125 (216)
T cd02507          99 RGLIR--SD-FLLLSCD--LVSNIPLSELLEE  125 (216)
T ss_pred             hhcCC--CC-EEEEeCC--EeecCCHHHHHHH
Confidence            77764  34 5778898  5667778888864

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]

Probab=98.63  E-value=1.3e-06  Score=65.61  Aligned_cols=149  Identities=15%  Similarity=0.200  Sum_probs=88.7

Q ss_pred             ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC
Q 028320           12 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL   91 (210)
Q Consensus        12 pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~   91 (210)
                      -|+.+++.++...  +.+|.|+|.+...   .....    +.++... .....++..++..++.. +-++++.+|.|+++
T Consensus        32 aML~dvi~Al~~~--~~~i~Vvtpde~~---~~~a~----~~~vl~d-~dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~  100 (210)
T COG1920          32 AMLVDVLGALAGV--LGEITVVTPDEEV---LVPAT----KLEVLAD-PDLNTAINAALDEIPLP-SEVIVVMADLPLLS  100 (210)
T ss_pred             HHHHHHHHHhhhh--cCCceEEcCChHh---hhhcc----cceeeec-cchHHHHHHHHhhCCCC-cceEEEecccccCC
Confidence            4889999999764  6899999987653   12111    1122222 22456677777777633 55788899999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCc-cCeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHH
Q 028320           92 SKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDR-KTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI  170 (210)
Q Consensus        92 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r-~~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~  170 (210)
                      ++.|+++++.....+.++  .|-..       +| -+..+-| +.+.    |. |.              +..|.+....
T Consensus       101 ~~~i~~~~~~~~d~dvvi--aP~~g-------GG-Tn~L~~r~~~~~----~~-y~--------------g~SF~~Hl~~  151 (210)
T COG1920         101 PEHIERALSAAKDADVVI--APGRG-------GG-TNVLFARKSAFR----PR-YG--------------GVSFLRHLEE  151 (210)
T ss_pred             HHHHHHHHHhcCCCcEEE--ecCCC-------Cc-eEEEEEeccccc----cc-cc--------------CccHHHHHHH
Confidence            999999998766543322  23211       12 0001111 1111    11 11              1112333455


Q ss_pred             HHhCCCCeEEEecCCCCccccChhhHHHHH
Q 028320          171 VEHLKHPVYITEGSYTNIKVTTPDDLLIAE  200 (210)
Q Consensus       171 ~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~  200 (210)
                      .++.|..+.+.+......|||||+||..+-
T Consensus       152 Ark~G~~~~~~dSf~l~~DVDtpeDL~e~~  181 (210)
T COG1920         152 ARKRGLVVLTYDSFGLSADVDTPEDLVEAF  181 (210)
T ss_pred             HHHcCCEEEEecccceecCCCCHHHHHHHH
Confidence            566777777666666789999999997664

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=98.47  E-value=4.1e-07  Score=68.42  Aligned_cols=82  Identities=23%  Similarity=0.295  Sum_probs=59.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCcc--HHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE--RQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~--~~~si~~~l~~~~~~~d   78 (210)
                      .||.|++++|+|||++.|+.+++++ ++.|+||||.-. +.+.=+-.+|++...+-+...+  ...|+..|...++  ..
T Consensus        21 tpK~LlkV~g~plIErqI~~L~e~g-I~dI~IVvGYlk-E~FeYLkdKy~vtLvyN~kY~~yNn~ySlyla~d~l~--nt   96 (231)
T COG4750          21 TPKSLLKVNGEPLIERQIEQLREAG-IDDITIVVGYLK-EQFEYLKDKYDVTLVYNPKYREYNNIYSLYLARDFLN--NT   96 (231)
T ss_pred             CChHHHHhcCcccHHHHHHHHHHCC-CceEEEEeeehH-HHHHHHHHhcCeEEEeCchHHhhhhHHHHHHHHHHhc--cc
Confidence            4899999999999999999999996 999999999975 4554444567644333332222  2678888988886  23


Q ss_pred             EEEEEeCCCC
Q 028320           79 LVCIHDSARP   88 (210)
Q Consensus        79 ~vl~~~~d~P   88 (210)
                      +  ++++|.-
T Consensus        97 Y--iidsDny  104 (231)
T COG4750          97 Y--IIDSDNY  104 (231)
T ss_pred             E--EeccchH
Confidence            4  3556543

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=5.5e-07  Score=74.42  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hcCCcEE-----Ee-cC--CccHHHHHHHHHH
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLK-----FS-LP--GKERQDSVYSGLQ   71 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~~~~v~-----~~-~~--~~~~~~si~~~l~   71 (210)
                      +||+|+|++++|||.|.+..+.+++ |.+++|++..++...+.+++. .+..+..     +- .+  .-+..++++.--.
T Consensus        30 ~pKaLLPIgn~PMi~YpL~~L~~~g-fteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~ip~~~~~d~gtadsLr~Iy~  108 (433)
T KOG1462|consen   30 LPKALLPIGNKPMILYPLNSLEQAG-FTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEIPTDDNSDFGTADSLRYIYS  108 (433)
T ss_pred             cchhhcccCCcceeeeehhHHHhcC-CeEEEEEecHHHHHHHHHHHhcCCcccccccEEEeecccccccCCHHHHhhhhh
Confidence            5999999999999999999999986 999999999876666766663 3332221     11 11  1123555555444


Q ss_pred             cccCCC-CEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           72 EVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        72 ~~~~~~-d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      .+.  + |+ +++.||  |++--.+..+++.+..+++
T Consensus       109 kik--S~Df-lvlsCD--~Vtdv~l~~lvd~FR~~d~  140 (433)
T KOG1462|consen  109 KIK--SEDF-LVLSCD--FVTDVPLQPLVDKFRATDA  140 (433)
T ss_pred             hhc--cCCE-EEEecc--cccCCCcHHHHHHHhccCh
Confidence            444  4 55 556665  6777777777777776554

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.13  E-value=1.8e-05  Score=68.89  Aligned_cols=101  Identities=15%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC---cEEEecCCccHHHHHHHHHHccc-C
Q 028320            1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLPGKERQDSVYSGLQEVD-F   75 (210)
Q Consensus         1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~---~v~~~~~~~~~~~si~~~l~~~~-~   75 (210)
                      .||||+++.| +|||+++++++...+ +.+.+|||+......+++.+..++.   .+..-+-+.++..++..|.-.+. .
T Consensus        27 ~PKq~l~l~~~~sllq~t~~r~~~~~-~~~~iivt~~~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaialaa~~~~~~  105 (478)
T PRK15460         27 YPKQFLCLKGDLTMLQTTICRLNGVE-CESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKRH  105 (478)
T ss_pred             CCcceeECCCCCCHHHHHHHHHHhCC-CCCcEEEeCHHHHHHHHHHHHhcCCccccEEecCCCCChHHHHHHHHHHHHHh
Confidence            4999999955 799999999998765 5555577887765666666655541   33333334455566544443332 1


Q ss_pred             --C-CCEEEEEeCCCCCCCHHHHHHHHHHH
Q 028320           76 --N-SELVCIHDSARPLVLSKDVQKVLMDA  102 (210)
Q Consensus        76 --~-~d~vl~~~~d~Pli~~~~i~~~i~~~  102 (210)
                        + ...++++.+|+-.-+.+.+.+.+...
T Consensus       106 ~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A  135 (478)
T PRK15460        106 SPESDPLMLVLAADHVIADEDAFRAAVRNA  135 (478)
T ss_pred             cCCCCCeEEEeccccccCCHHHHHHHHHHH
Confidence              1 35788999998888887777766554

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=98.11  E-value=2.4e-05  Score=63.72  Aligned_cols=103  Identities=17%  Similarity=0.229  Sum_probs=72.3

Q ss_pred             CCccceec-CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCc----EEEecCCccHHHHHHHHH-Hccc
Q 028320            1 MPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD----LKFSLPGKERQDSVYSGL-QEVD   74 (210)
Q Consensus         1 ~~K~l~~i-~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~----v~~~~~~~~~~~si~~~l-~~~~   74 (210)
                      .||||+++ ++++|++.|++++......++++|||+.+....+++-+...+..    +.+-+-|..+..++..|. ....
T Consensus        23 ~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~illEP~gRnTApAIA~aa~~~~~  102 (333)
T COG0836          23 YPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATA  102 (333)
T ss_pred             CCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceEeccCCCCcHHHHHHHHHHHHH
Confidence            59999999 55999999999998855578999999998755566655543322    323333555566664433 3333


Q ss_pred             CC-CCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320           75 FN-SELVCIHDSARPLVLSKDVQKVLMDAL  103 (210)
Q Consensus        75 ~~-~d~vl~~~~d~Pli~~~~i~~~i~~~~  103 (210)
                      .. +..++++.+|+=.-+.+.+.+.+....
T Consensus       103 ~~~d~~~lVlpsDH~I~d~~af~~av~~A~  132 (333)
T COG0836         103 EGGDALVLVLPSDHVIADEEAFLNAVKKAE  132 (333)
T ss_pred             hCCCcEEEEecCcceeccHHHHHHHHHHHH
Confidence            22 347899999999999888888776654

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=1.5e-05  Score=64.20  Aligned_cols=107  Identities=16%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh---HHHHHHHhhcCCcEEEecCCc--cHHHHHHHHHHcc-c
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS---DIFEETKEKINVDLKFSLPGK--ERQDSVYSGLQEV-D   74 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~---~~i~~~~~~~~~~v~~~~~~~--~~~~si~~~l~~~-~   74 (210)
                      +||+|.|++|.|||.|-|+++.+...+.+|.++.=.++.   +++.+..+.+..+++|.....  +....+.+--+.+ .
T Consensus        25 vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl~  104 (407)
T KOG1460|consen   25 VPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILA  104 (407)
T ss_pred             CCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhhccCCCCCcccceeehhhHHhc
Confidence            599999999999999999999999999999998877752   233444455677776653211  1122233322222 2


Q ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320           75 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV  109 (210)
Q Consensus        75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~  109 (210)
                      .+.+.|+++.||-=  ..--+++|+++...+++..
T Consensus       105 g~ps~vFvlnaDVC--csfPl~~ml~ahr~~g~~~  137 (407)
T KOG1460|consen  105 GSPSAVFVLNADVC--CSFPLQDMLEAHRRYGGIG  137 (407)
T ss_pred             CCCceEEEEeccee--cCCcHHHHHHHHhhcCCce
Confidence            23466666655421  1222577888887777643

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.0044  Score=54.76  Aligned_cols=96  Identities=22%  Similarity=0.318  Sum_probs=65.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh--c----CCcEEEecCCccHHHHHHHHHHccc
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--I----NVDLKFSLPGKERQDSVYSGLQEVD   74 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~--~----~~~v~~~~~~~~~~~si~~~l~~~~   74 (210)
                      .|+.|+|+.+.|||.|+++.+..++ +.+++|.|+... ..+.+.+++  +    ...+..+.++.  ..|+-.+|+.+.
T Consensus        45 ~p~~LLPlaNVpmIdYtL~~L~~ag-V~eVfvfc~~~~-~qi~e~i~~sew~~~~~~~v~ti~s~~--~~S~GDamR~id  120 (673)
T KOG1461|consen   45 KPRVLLPLANVPMIDYTLEWLERAG-VEEVFVFCSAHA-AQIIEYIEKSEWYLPMSFIVVTICSGE--SRSVGDAMRDID  120 (673)
T ss_pred             CCceEeeecCchHHHHHHHHHHhcC-ceEEEEEecccH-HHHHHHHhhccccccccceEEEEcCCC--cCcHHHHHHHHH
Confidence            4889999999999999999998886 899999998664 345666554  1    11233333333  345667777774


Q ss_pred             C----CCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320           75 F----NSELVCIHDSARPLVLSKDVQKVLMDAL  103 (210)
Q Consensus        75 ~----~~d~vl~~~~d~Pli~~~~i~~~i~~~~  103 (210)
                      +    ..|++|+- ||  -++--.+.++++..+
T Consensus       121 ~k~litgDFiLVs-gd--~vsN~pl~~~l~eHr  150 (673)
T KOG1461|consen  121 EKQLITGDFILVS-GD--TVSNMPLRNVLEEHR  150 (673)
T ss_pred             hcceeecceEEEe-CC--eeecCchHHHHHHHH
Confidence            3    35776654 42  455566788888774

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=96.94  E-value=0.036  Score=46.83  Aligned_cols=197  Identities=17%  Similarity=0.153  Sum_probs=123.2

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCC-----cEEEec-----CC----ccH
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INV-----DLKFSL-----PG----KER   62 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~-----~v~~~~-----~~----~~~   62 (210)
                      ++|+-.|++|| .||..++..+..|+ +.+|.|.|-.... .+.+.+..   ++.     -+.+.+     ++    +..
T Consensus        26 RakpAVpFgGkYRiIDF~LSN~vNSG-i~~I~VltQy~~~-SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~~~~~~wy~Gt  103 (393)
T COG0448          26 RAKPAVPFGGKYRIIDFALSNCVNSG-IRRIGVLTQYKSH-SLNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGT  103 (393)
T ss_pred             ccccccccCceeEEEeEEcccccccC-CCeEEEEeccchh-HHHHHhhCCCccccccccCcEEEeCchhccCCCcceecc
Confidence            57999999998 59999999999996 9999999988763 22333321   100     122222     11    123


Q ss_pred             HHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeeccc------ceEEccCCCceeeecCc
Q 028320           63 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKA------TIKEANSESFVVRTLDR  133 (210)
Q Consensus        63 ~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~~~------~~~~~~~~g~v~~~~~r  133 (210)
                      .+++..-+..++. +.++|+++.||+  +-.=+++++++...+.++.  +.+.++..      .+..+|++|++..+.+.
T Consensus       104 adai~Qnl~~i~~~~~eyvlIlsgDh--IYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~eK  181 (393)
T COG0448         104 ADAIYQNLLIIRRSDPEYVLILSGDH--IYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEK  181 (393)
T ss_pred             HHHHHHhHHHHHhcCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeeec
Confidence            6667766666653 568999999984  6667889999988887763  44555542      23445777887765322


Q ss_pred             ------cCeeeecCCcccChHHHHHHHHHHHhc--CCCCCcHHHHH---HhCCCCeEEEecCCCCccccChhhHHHHHHH
Q 028320          134 ------KTLWEMQTPQVIKPDLLKKGFELVNRE--GLEVTDDVSIV---EHLKHPVYITEGSYTNIKVTTPDDLLIAERI  202 (210)
Q Consensus       134 ------~~~~~~~~P~~f~~~~l~~~~~~~~~~--~~~~~d~~~~~---~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~  202 (210)
                            +.-..--.-++|+...|..++....++  +..-. ...++   ...|. +..-+....+-||.|-+-|-.|.--
T Consensus       182 p~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~Df-gkdiIp~~~~~~~-v~AY~f~gYw~dVgTi~syy~aNmd  259 (393)
T COG0448         182 PADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDF-GKDIIPKLLERGK-VYAYEFSGYWRDVGTIDSYYEANMD  259 (393)
T ss_pred             cCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccc-hHHHHHHHHhcCC-EEEEeccchhhhcccHHHHHHhhHH
Confidence                  110111123678999998888765442  22211 12333   22333 5444555689999999988887754


Q ss_pred             h
Q 028320          203 L  203 (210)
Q Consensus       203 ~  203 (210)
                      |
T Consensus       260 L  260 (393)
T COG0448         260 L  260 (393)
T ss_pred             h
Confidence            3

>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function

Probab=96.88  E-value=0.012  Score=41.80  Aligned_cols=91  Identities=11%  Similarity=0.127  Sum_probs=45.3

Q ss_pred             HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-cCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHH
Q 028320           17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDV   95 (210)
Q Consensus        17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i   95 (210)
                      |++++.+....+..+..+++.............  .+.+. .++.+-.+-+.+|++.+....+.|+++-.|.|.++++.|
T Consensus         1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l   78 (122)
T PF09837_consen    1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPS--GFSFFPQQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDL   78 (122)
T ss_dssp             -------TSSSEEEEEE----TTHHHHHHHH-T--TSEEEE--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHH
T ss_pred             CccccccCCCcCEEEEEcCCccHHHHhccccCC--CCEEeecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH
Confidence            456777766555555555554433333222222  23333 345555666777777764346789999999999999999


Q ss_pred             HHHHHHHHhcCCeE
Q 028320           96 QKVLMDALRVGAAV  109 (210)
Q Consensus        96 ~~~i~~~~~~~~~~  109 (210)
                      +++++.++..+.++
T Consensus        79 ~~A~~~L~~~d~Vl   92 (122)
T PF09837_consen   79 EQAFEALQRHDVVL   92 (122)
T ss_dssp             HHHHHHTTT-SEEE
T ss_pred             HHHHHHhccCCEEE
Confidence            99999987765443

; PDB: 3CGX_A.

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=96.15  E-value=0.17  Score=39.67  Aligned_cols=92  Identities=13%  Similarity=-0.037  Sum_probs=64.4

Q ss_pred             cCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320            8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR   87 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~   87 (210)
                      -++...|..+++++...  .++|+|+-+... +...++++.++..+... ...+...+.-.|++...  .++|+++++|.
T Consensus         9 ~Ne~~~l~~~l~sl~~~--~~eiivvD~gSt-D~t~~i~~~~~~~v~~~-~~~g~~~~~n~~~~~a~--~d~vl~lDaD~   82 (229)
T cd02511           9 KNEERNIERCLESVKWA--VDEIIVVDSGST-DRTVEIAKEYGAKVYQR-WWDGFGAQRNFALELAT--NDWVLSLDADE   82 (229)
T ss_pred             CCcHHHHHHHHHHHhcc--cCEEEEEeCCCC-ccHHHHHHHcCCEEEEC-CCCChHHHHHHHHHhCC--CCEEEEEeCCc
Confidence            46667788889888643  378877655433 55677788887665443 22333455556777765  68999999997


Q ss_pred             CCCCHHHHHHHHHHHHhcC
Q 028320           88 PLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        88 Pli~~~~i~~~i~~~~~~~  106 (210)
                       .++++.++.+.+.+...+
T Consensus        83 -~~~~~~~~~l~~~~~~~~  100 (229)
T cd02511          83 -RLTPELADEILALLATDD  100 (229)
T ss_pred             -CcCHHHHHHHHHHHhCCC
Confidence             569999999998876654

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=96.02  E-value=0.2  Score=39.06  Aligned_cols=94  Identities=9%  Similarity=0.095  Sum_probs=61.5

Q ss_pred             hHHHHHHHHhcCCC-CCeEEEEeCCCChH----HHHHHHhhcCCcEEEecCC--cc-HHHHHHHHHHcccCCCCEEEEEe
Q 028320           13 IALYSFYTFSRMVE-VKEIVVVCDPSYSD----IFEETKEKINVDLKFSLPG--KE-RQDSVYSGLQEVDFNSELVCIHD   84 (210)
Q Consensus        13 li~~~i~~~~~~~~-~~~ivVv~~~~~~~----~i~~~~~~~~~~v~~~~~~--~~-~~~si~~~l~~~~~~~d~vl~~~   84 (210)
                      +|..+++++..... --+|+||-+.....    .+++++++++..+.++...  .+ ...++-.|++.+..+.|++++++
T Consensus        13 ~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD   92 (236)
T cd06435          13 MVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVID   92 (236)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEc
Confidence            79999999876543 23676665443211    2345555555455444221  12 25567778887754479999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCC
Q 028320           85 SARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        85 ~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +|. .++++.+.+++..+...+.
T Consensus        93 ~D~-~~~~~~l~~l~~~~~~~~~  114 (236)
T cd06435          93 ADY-QVEPDWLKRLVPIFDDPRV  114 (236)
T ss_pred             CCC-CcCHHHHHHHHHHhcCCCe
Confidence            996 7899999999988864343

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=95.90  E-value=0.24  Score=34.82  Aligned_cols=92  Identities=18%  Similarity=0.133  Sum_probs=58.0

Q ss_pred             cCCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcC-----CcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320            8 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKIN-----VDLKFSLPGKERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~-----~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl   81 (210)
                      .+..+++.++++++.+... ..+++|+.+... +...+......     .......+..+...++..+++...  .++++
T Consensus         6 ~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~v~   82 (156)
T cd00761           6 YNEEPYLERCLESLLAQTYPNFEVIVVDDGST-DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAAR--GEYIL   82 (156)
T ss_pred             cCcHHHHHHHHHHHHhCCccceEEEEEeCCCC-ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhc--CCEEE
Confidence            4556999999999988752 467888777664 23334343332     111122233344666777877764  79999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHH
Q 028320           82 IHDSARPLVLSKDVQKVLMDAL  103 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~  103 (210)
                      ++++|..+ .++.+..++..+.
T Consensus        83 ~~d~D~~~-~~~~~~~~~~~~~  103 (156)
T cd00761          83 FLDADDLL-LPDWLERLVAELL  103 (156)
T ss_pred             EECCCCcc-CccHHHHHHHHHh
Confidence            99999986 5666666644443

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=95.74  E-value=0.45  Score=35.96  Aligned_cols=89  Identities=18%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             hHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHh----hcCCcEEEec--CCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320           13 IALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKE----KINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDS   85 (210)
Q Consensus        13 li~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~----~~~~~v~~~~--~~~~~~~si~~~l~~~~~~~d~vl~~~~   85 (210)
                      .|..+++++.+.... .+|+||-+....+.+.++++    +++  +.++.  ...+...+.-.|++...  .++++++++
T Consensus        14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~--gd~i~~lD~   89 (201)
T cd04195          14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT--YDWVARMDT   89 (201)
T ss_pred             HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC--CCEEEEeCC
Confidence            788999998765422 56666655432233344333    333  33332  22344666677887754  799999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcC
Q 028320           86 ARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        86 d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      |. ...++.++.+++.+....
T Consensus        90 Dd-~~~~~~l~~~~~~~~~~~  109 (201)
T cd04195          90 DD-ISLPDRFEKQLDFIEKNP  109 (201)
T ss_pred             cc-ccCcHHHHHHHHHHHhCC
Confidence            98 678999999999886543

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=95.70  E-value=0.23  Score=39.09  Aligned_cols=94  Identities=15%  Similarity=0.118  Sum_probs=61.3

Q ss_pred             CCeehHHHHHHHHhcCCCCC---eEEEEeCCCChHHHHHHHhhcCC-cEEEec--CCccHHHHHHHHHHcccCCCCEEEE
Q 028320            9 LGQPIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINV-DLKFSL--PGKERQDSVYSGLQEVDFNSELVCI   82 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~~~---~ivVv~~~~~~~~i~~~~~~~~~-~v~~~~--~~~~~~~si~~~l~~~~~~~d~vl~   82 (210)
                      +....|..+++.+.+.....   +|+|+.+... +...++++++.. .+.++.  ...+...+...|++...  .|++++
T Consensus        39 n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~v~~i~~~~~~g~~~a~n~gi~~a~--~d~i~~  115 (251)
T cd06439          39 NEEAVIEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYADKGVKLLRFPERRGKAAALNRALALAT--GEIVVF  115 (251)
T ss_pred             CcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHhhCcEEEEEcCCCCChHHHHHHHHHHcC--CCEEEE
Confidence            45557788888876543322   5777655543 445566665542 133332  22344666777888765  699999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           83 HDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        83 ~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      +++|.-+ +++.++++++.+...+
T Consensus       116 lD~D~~~-~~~~l~~l~~~~~~~~  138 (251)
T cd06439         116 TDANALL-DPDALRLLVRHFADPS  138 (251)
T ss_pred             EccccCc-CHHHHHHHHHHhcCCC
Confidence            9999987 5999999999886443

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=95.46  E-value=0.69  Score=34.61  Aligned_cols=96  Identities=8%  Similarity=0.017  Sum_probs=63.6

Q ss_pred             cCCeehHHHHHHHHhcCCC---CCeEEEEeCCCChHHHHHHHhhcCCcEEEec--CCccHHHHHHHHHHccc---CCCCE
Q 028320            8 LLGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVD---FNSEL   79 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~---~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~--~~~~~~~si~~~l~~~~---~~~d~   79 (210)
                      .+....|..+++++.+...   .-+|+|+.+... +...+++++++..+....  ...+...++..|+..+.   .+.|+
T Consensus         6 ~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~-D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~   84 (183)
T cd06438           6 HNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT-DDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDA   84 (183)
T ss_pred             cchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC-chHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCE
Confidence            3455678888888866432   135666655543 556677777765543322  22234667777887653   34789


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      ++++++|.=+ .++.+..++..+...
T Consensus        85 v~~~DaD~~~-~p~~l~~l~~~~~~~  109 (183)
T cd06438          85 VVVFDADNLV-DPNALEELNARFAAG  109 (183)
T ss_pred             EEEEcCCCCC-ChhHHHHHHHHHhhC
Confidence            9999999865 699999999888653

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=95.06  E-value=0.5  Score=39.05  Aligned_cols=94  Identities=15%  Similarity=0.107  Sum_probs=62.8

Q ss_pred             cCCeehHHHHHHHHhcC---CCCCeEEEEeCCCChHHHHHHHhhcCCcEEE-------ecCCccHHHHHHHHHHcccCCC
Q 028320            8 LLGQPIALYSFYTFSRM---VEVKEIVVVCDPSYSDIFEETKEKINVDLKF-------SLPGKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~---~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-------~~~~~~~~~si~~~l~~~~~~~   77 (210)
                      .|....|..+++.+.+.   ....+|+||-+.. .+...+.++.++..+..       .....+...++..|+....  .
T Consensus        40 yNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgS-tD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a~--g  116 (306)
T PRK13915         40 LNEEETVGKVVDSIRPLLMEPLVDELIVIDSGS-TDATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAATT--G  116 (306)
T ss_pred             CCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCC-ccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhcC--C
Confidence            36667788888887642   2246777765433 35566677766643211       1112234667778887754  7


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      |+|+++++|.-..+++.+.++++.+..
T Consensus       117 d~vv~lDaD~~~~~p~~l~~l~~~l~~  143 (306)
T PRK13915        117 DIVVFVDADLINFDPMFVPGLLGPLLT  143 (306)
T ss_pred             CEEEEEeCccccCCHHHHHHHHHHHHh
Confidence            999999999987899999999988753

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=95.05  E-value=0.81  Score=35.33  Aligned_cols=95  Identities=12%  Similarity=0.115  Sum_probs=62.3

Q ss_pred             eecCCe--ehHHHHHHHHhcCCCCC---eEEEEeCCCChHHHHHHHhhcCC----cEEEecCCc-cHHHHHHHHHHcccC
Q 028320            6 LPLLGQ--PIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINV----DLKFSLPGK-ERQDSVYSGLQEVDF   75 (210)
Q Consensus         6 ~~i~gk--pli~~~i~~~~~~~~~~---~ivVv~~~~~~~~i~~~~~~~~~----~v~~~~~~~-~~~~si~~~l~~~~~   75 (210)
                      .|.-+.  .++..+++++.+...-+   +|+||-+... +...++++.++.    .+....... .....+..|++... 
T Consensus         7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a~-   84 (234)
T cd06421           7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR-PELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHTT-   84 (234)
T ss_pred             EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc-hhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhCC-
Confidence            344443  37889999988765444   6777655543 556667766653    222222111 12445677887764 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                       .|+++++++|.=+ +++.+.++++.+..
T Consensus        85 -~d~i~~lD~D~~~-~~~~l~~l~~~~~~  111 (234)
T cd06421          85 -GDFVAILDADHVP-TPDFLRRTLGYFLD  111 (234)
T ss_pred             -CCEEEEEccccCc-CccHHHHHHHHHhc
Confidence             7999999999644 88999999998876

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=95.00  E-value=0.32  Score=36.13  Aligned_cols=93  Identities=19%  Similarity=0.174  Sum_probs=57.4

Q ss_pred             eehHHHHHHHHhcCC---CCCeEEEEeCCCChHHHHHHHhhcCC---cEEEe--cCCccHHHHHHHHHHcccCCCCEEEE
Q 028320           11 QPIALYSFYTFSRMV---EVKEIVVVCDPSYSDIFEETKEKINV---DLKFS--LPGKERQDSVYSGLQEVDFNSELVCI   82 (210)
Q Consensus        11 kpli~~~i~~~~~~~---~~~~ivVv~~~~~~~~i~~~~~~~~~---~v~~~--~~~~~~~~si~~~l~~~~~~~d~vl~   82 (210)
                      ...|..+++.+.+..   ...+|+|+-+... +...+.++.+..   .+.++  ....+...+...|++...  .|++++
T Consensus         9 ~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~-d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~   85 (185)
T cd04179           9 EENIPELVERLLAVLEEGYDYEIIVVDDGST-DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAAR--GDIVVT   85 (185)
T ss_pred             HhhHHHHHHHHHHHhccCCCEEEEEEcCCCC-CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhc--CCEEEE
Confidence            345667777776653   2467777654432 233444444322   22222  222233566777887765  599999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           83 HDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        83 ~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +++|.- ++++.++++++.....+.
T Consensus        86 lD~D~~-~~~~~l~~l~~~~~~~~~  109 (185)
T cd04179          86 MDADLQ-HPPEDIPKLLEKLLEGGA  109 (185)
T ss_pred             EeCCCC-CCHHHHHHHHHHHhccCC
Confidence            999985 489999999997655544

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=94.91  E-value=0.51  Score=36.61  Aligned_cols=91  Identities=15%  Similarity=0.182  Sum_probs=58.9

Q ss_pred             cCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHH---hhcCCcEEEe-cCCccHHHHHHHHHHcccCCCCEEEE
Q 028320            8 LLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK---EKINVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCI   82 (210)
Q Consensus         8 i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~---~~~~~~v~~~-~~~~~~~~si~~~l~~~~~~~d~vl~   82 (210)
                      .++. +.|..+++.+.+.. ..+|+||.+... +...+.+   ..+. .+.+. ....+...++..|++...  .|+|++
T Consensus         9 ~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~-d~~~~~l~~~~~~~-~~~v~~~~~~g~~~a~n~g~~~a~--~d~v~~   83 (235)
T cd06434           9 YDEDPDVFRECLRSILRQK-PLEIIVVTDGDD-EPYLSILSQTVKYG-GIFVITVPHPGKRRALAEGIRHVT--TDIVVL   83 (235)
T ss_pred             cCCChHHHHHHHHHHHhCC-CCEEEEEeCCCC-hHHHHHHHhhccCC-cEEEEecCCCChHHHHHHHHHHhC--CCEEEE
Confidence            3555 78999999987754 457777666554 3334432   2222 22222 222334566777887764  799999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHh
Q 028320           83 HDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        83 ~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      +++|. .++++.++.+++.+..
T Consensus        84 lD~D~-~~~~~~l~~l~~~~~~  104 (235)
T cd06434          84 LDSDT-VWPPNALPEMLKPFED  104 (235)
T ss_pred             ECCCc-eeChhHHHHHHHhccC
Confidence            99998 4567789999998873

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=94.81  E-value=0.73  Score=33.10  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCC----cEEEe--cCCccHHHHHHHHHHcccCCCCEEE
Q 028320            9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINV----DLKFS--LPGKERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~----~v~~~--~~~~~~~~si~~~l~~~~~~~d~vl   81 (210)
                      +....|..+++.+.+... -.+|+|+-+... +...+.+..+..    .+.+.  ....+...+...|++...  .++++
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~--~~~i~   83 (180)
T cd06423           7 NEEAVIERTIESLLALDYPKLEVIVVDDGST-DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK--GDIVV   83 (180)
T ss_pred             ChHHHHHHHHHHHHhCCCCceEEEEEeCCCc-cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC--CCEEE
Confidence            445678888888876532 246666654443 333444444321    12222  222233566777888764  79999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           82 IHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      ++++|. .+.++.+..++..+....
T Consensus        84 ~~D~D~-~~~~~~l~~~~~~~~~~~  107 (180)
T cd06423          84 VLDADT-ILEPDALKRLVVPFFADP  107 (180)
T ss_pred             EECCCC-CcChHHHHHHHHHhccCC
Confidence            999998 558999999966665443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=94.78  E-value=0.63  Score=33.54  Aligned_cols=95  Identities=13%  Similarity=0.025  Sum_probs=62.2

Q ss_pred             cCCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCCEEEEEe
Q 028320            8 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHD   84 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl~~~   84 (210)
                      .+...++..+++++.+... ..+|+|+-+... +...+.+.++...+.++..  ..+...+...|++.+.  .+++++++
T Consensus         6 ~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~-~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~--~~~i~~~D   82 (166)
T cd04186           6 YNSLEYLKACLDSLLAQTYPDFEVIVVDNAST-DGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAK--GDYVLLLN   82 (166)
T ss_pred             cCCHHHHHHHHHHHHhccCCCeEEEEEECCCC-chHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCC--CCEEEEEC
Confidence            4566889999999876532 346777665543 3344555444323443322  2234566677888774  79999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcC
Q 028320           85 SARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        85 ~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      +|.= ++++.+..+++.+....
T Consensus        83 ~D~~-~~~~~l~~~~~~~~~~~  103 (166)
T cd04186          83 PDTV-VEPGALLELLDAAEQDP  103 (166)
T ss_pred             CCcE-ECccHHHHHHHHHHhCC
Confidence            9985 57899999998776553

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=94.72  E-value=1.1  Score=33.70  Aligned_cols=94  Identities=12%  Similarity=0.035  Sum_probs=57.7

Q ss_pred             cCCe-ehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhc---CCcEEEe--cCCccHHHHHHHHHHcccCCCCEE
Q 028320            8 LLGQ-PIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI---NVDLKFS--LPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         8 i~gk-pli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~---~~~v~~~--~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .++. ..+..+++++.+.... -+|+|+-+......+.+..+.+   ...+.++  ....+...+.-.|++...  .|++
T Consensus        10 ~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i   87 (202)
T cd04184          10 YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELAT--GEFV   87 (202)
T ss_pred             ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhc--CCEE
Confidence            4566 7788888888754322 2666664433212233333322   1223333  222334566677887764  7999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      +++++|. .++++.++.+++.+..
T Consensus        88 ~~ld~D~-~~~~~~l~~~~~~~~~  110 (202)
T cd04184          88 ALLDHDD-ELAPHALYEVVKALNE  110 (202)
T ss_pred             EEECCCC-cCChHHHHHHHHHHHh
Confidence            9999999 6699999999998843

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=94.66  E-value=0.94  Score=34.74  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=57.4

Q ss_pred             CCeehHHHHHHHHhcCCCCC---eEEEEeCCCChHHHHHHHh---hc-CCcEEEecC----CccHHHHHHHHHHcccCCC
Q 028320            9 LGQPIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKE---KI-NVDLKFSLP----GKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~~~---~ivVv~~~~~~~~i~~~~~---~~-~~~v~~~~~----~~~~~~si~~~l~~~~~~~   77 (210)
                      +....|..+++++.+...-.   +|+||-+... +...+.++   .. +..+..+..    ......++..|++...  .
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~--~   83 (229)
T cd04192           7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHST-DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK--G   83 (229)
T ss_pred             CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC-cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc--C
Confidence            45567888999876543322   5666544322 22333332   11 233433322    2233455666776654  7


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      |+++++++|. .+.++.++++++.+...+.
T Consensus        84 d~i~~~D~D~-~~~~~~l~~l~~~~~~~~~  112 (229)
T cd04192          84 DWIVTTDADC-VVPSNWLLTFVAFIQKEQI  112 (229)
T ss_pred             CEEEEECCCc-ccCHHHHHHHHHHhhcCCC
Confidence            9999999999 7789999999987765543

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK11204 N-glycosyltransferase; Provisional

Probab=94.63  E-value=0.74  Score=39.49  Aligned_cols=94  Identities=14%  Similarity=0.095  Sum_probs=61.4

Q ss_pred             cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHH----HhhcCCcEEEec--CCccHHHHHHHHHHcccCCCCEE
Q 028320            8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEET----KEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~----~~~~~~~v~~~~--~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .|+...|..+++++.+.... -+|+|+.+... +...+.    .++++ .+.++.  ...+...++..|++...  .|++
T Consensus        63 yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~-d~t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a~--~d~i  138 (420)
T PRK11204         63 YNEGENVEETISHLLALRYPNYEVIAINDGSS-DNTGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAAR--SEYL  138 (420)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC-ccHHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHcC--CCEE
Confidence            35667889999998765433 36666655432 223333    33332 344443  22334677778888754  7999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      +++|+|. .++++.++++++.+++..
T Consensus       139 ~~lDaD~-~~~~d~L~~l~~~~~~~~  163 (420)
T PRK11204        139 VCIDGDA-LLDPDAAAYMVEHFLHNP  163 (420)
T ss_pred             EEECCCC-CCChhHHHHHHHHHHhCC
Confidence            9999998 569999999999886543

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=94.61  E-value=0.32  Score=34.99  Aligned_cols=97  Identities=13%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             cCCeehHHHHHHHHhcC-CCCCeEEEEeCCCChHHHHHHHhhc---CCcEEEecC--CccHHHHHHHHHHcccCCCCEEE
Q 028320            8 LLGQPIALYSFYTFSRM-VEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSLP--GKERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~-~~~~~ivVv~~~~~~~~i~~~~~~~---~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl   81 (210)
                      .++...|..+++++.+. ....+|+|+-+... +...+.++++   +..+.++..  ..+...+...|++.+.  .++++
T Consensus         7 ~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~--~~~i~   83 (169)
T PF00535_consen    7 YNEAEYLERTLESLLKQTDPDFEIIVVDDGST-DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAK--GEYIL   83 (169)
T ss_dssp             SS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S-SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----SSEEE
T ss_pred             eCCHHHHHHHHHHHhhccCCCEEEEEeccccc-cccccccccccccccccccccccccccccccccccccccc--eeEEE
Confidence            34457788899987765 23467777766652 3345555554   345555433  2344667777888876  67999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320           82 IHDSARPLVLSKDVQKVLMDALRVGAA  108 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~~~~~~  108 (210)
                      ++++|.=+ ++..++.+++.+...+..
T Consensus        84 ~ld~D~~~-~~~~l~~l~~~~~~~~~~  109 (169)
T PF00535_consen   84 FLDDDDII-SPDWLEELVEALEKNPPD  109 (169)
T ss_dssp             EEETTEEE--TTHHHHHHHHHHHCTTE
T ss_pred             EeCCCceE-cHHHHHHHHHHHHhCCCc
Confidence            99999644 455999999999886653

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=94.61  E-value=0.032  Score=45.20  Aligned_cols=94  Identities=15%  Similarity=-0.011  Sum_probs=57.6

Q ss_pred             CCccceecC---CeehHHHHHHHHhcCC-------CCCeEEEEeCCCChHHHHHHHhhcCC---cEE-E--------ecC
Q 028320            1 MPKQYLPLL---GQPIALYSFYTFSRMV-------EVKEIVVVCDPSYSDIFEETKEKINV---DLK-F--------SLP   58 (210)
Q Consensus         1 ~~K~l~~i~---gkpli~~~i~~~~~~~-------~~~~ivVv~~~~~~~~i~~~~~~~~~---~v~-~--------~~~   58 (210)
                      .||++++++   |+|+|+|.+++++...       .+ ..++.+.+...+.+.+..++++.   .+. +        ..+
T Consensus        18 ~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~I-p~~imts~~t~~~t~~~l~~~~~~~~~v~~f~Q~~~P~~~~~   96 (266)
T cd04180          18 GPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKI-PEQLMNSKYTHEKTQCYFEKINQKNSYVITFMQGKLPLKNDD   96 (266)
T ss_pred             CCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCchhHHHHHHHHHHcCCCCCceEEEEeCCceEEeCC
Confidence            499999999   9999999999997631       23 34555555544667787777541   111 1        001


Q ss_pred             C-------------ccHHHHHHHHHHc------cc-CCCCEEEEEeCCCCCCCHHHH
Q 028320           59 G-------------KERQDSVYSGLQE------VD-FNSELVCIHDSARPLVLSKDV   95 (210)
Q Consensus        59 ~-------------~~~~~si~~~l~~------~~-~~~d~vl~~~~d~Pli~~~~i   95 (210)
                      +             ......+..+|..      +. ....++.+.+.|.++....+-
T Consensus        97 ~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP  153 (266)
T cd04180          97 DARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP  153 (266)
T ss_pred             CCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH
Confidence            0             0013345444432      22 236889999999999876433

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=94.12  E-value=1.6  Score=41.12  Aligned_cols=97  Identities=13%  Similarity=0.169  Sum_probs=64.5

Q ss_pred             ceecCCee--hHHHHHHHHhcCCCC-C--eEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCC
Q 028320            5 YLPLLGQP--IALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         5 l~~i~gkp--li~~~i~~~~~~~~~-~--~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d   78 (210)
                      +.|.-+.+  ++..++.++.+...- +  +|+|+-|.. .+.+.++++++++.+....+ .......+-+|++..+  .|
T Consensus       265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS-~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a~--GE  341 (852)
T PRK11498        265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGG-REEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYAK--GE  341 (852)
T ss_pred             EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCC-ChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhCC--CC
Confidence            34555555  577888887765443 2  466654443 36788888887754322222 1123566778888764  79


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      +++++|+|.= .+++.+++++..+...
T Consensus       342 yIavlDAD~i-p~pdfL~~~V~~f~~d  367 (852)
T PRK11498        342 FVAIFDCDHV-PTRSFLQMTMGWFLKD  367 (852)
T ss_pred             EEEEECCCCC-CChHHHHHHHHHHHhC
Confidence            9999999995 6899999998876544

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=93.98  E-value=1.9  Score=31.99  Aligned_cols=91  Identities=15%  Similarity=0.056  Sum_probs=52.5

Q ss_pred             CeehHHHHHHHHhcC----CCCCeEEEEeCCCChHHHHHHHhhcC---CcEEEe--cCCccHHHHHHHHHHcccCCCCEE
Q 028320           10 GQPIALYSFYTFSRM----VEVKEIVVVCDPSYSDIFEETKEKIN---VDLKFS--LPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus        10 gkpli~~~i~~~~~~----~~~~~ivVv~~~~~~~~i~~~~~~~~---~~v~~~--~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      +.-.|..+++++...    ...-+|+|+-+... +...+.++.+.   ..+.++  ....+...++..|++...  .|++
T Consensus         8 ~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~--~d~i   84 (181)
T cd04187           8 EEENLPELYERLKAVLESLGYDYEIIFVDDGST-DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR--GDAV   84 (181)
T ss_pred             chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC--CCEE
Confidence            333455555554321    11236666654433 22333333321   123333  222334667778888765  6899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      +++++|..+ +++.++.+++.+..
T Consensus        85 ~~~D~D~~~-~~~~l~~l~~~~~~  107 (181)
T cd04187          85 ITMDADLQD-PPELIPEMLAKWEE  107 (181)
T ss_pred             EEEeCCCCC-CHHHHHHHHHHHhC
Confidence            999999985 89999999988543

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=93.90  E-value=1.5  Score=33.68  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=57.3

Q ss_pred             cCCeehHHHHHHHHhcCCC--CCeEEEEeCCCChHHHHHHHh----hcCCcEEEe--cCCccHHHHHHHHHHcccCCCCE
Q 028320            8 LLGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEETKE----KINVDLKFS--LPGKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~--~~~ivVv~~~~~~~~i~~~~~----~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .++...|..+++++.+...  --+|+||-+... +...+.++    +++ .+.+.  ....+...+...|++...  .|+
T Consensus         6 yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~-d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~--gd~   81 (224)
T cd06442           6 YNERENIPELIERLDAALKGIDYEIIVVDDNSP-DGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAAR--GDV   81 (224)
T ss_pred             cchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC-CChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcC--CCE
Confidence            3455678888888876432  246666644322 22233333    322 22322  222233566778888875  689


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      ++++++|.- .+++.++.+++.+...+
T Consensus        82 i~~lD~D~~-~~~~~l~~l~~~~~~~~  107 (224)
T cd06442          82 IVVMDADLS-HPPEYIPELLEAQLEGG  107 (224)
T ss_pred             EEEEECCCC-CCHHHHHHHHHHHhcCC
Confidence            999999976 48999999999864433

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=93.65  E-value=1.5  Score=34.07  Aligned_cols=95  Identities=13%  Similarity=0.093  Sum_probs=59.9

Q ss_pred             CCeehHHHHHHHHhcCCC---CCeEEEEeCCCChHHHHHHHhhcC---CcEEEecC-CccHHHHHHHHHHcccCCCCEEE
Q 028320            9 LGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKIN---VDLKFSLP-GKERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~---~~~ivVv~~~~~~~~i~~~~~~~~---~~v~~~~~-~~~~~~si~~~l~~~~~~~d~vl   81 (210)
                      +..+.|..+++.+.+...   --+|+|+-+... +...+.++.+.   ..+.++.. +.+...+.-.|++...  .|+++
T Consensus        10 n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~a~--~d~v~   86 (249)
T cd02525          10 NEEKYIEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRNSR--GDIII   86 (249)
T ss_pred             CchhhHHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHHhC--CCEEE
Confidence            455678888888876532   135666644433 33444444432   22444432 2223556667877764  79999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           82 IHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      ++++|. .++++.++++++.+...+.
T Consensus        87 ~lD~D~-~~~~~~l~~~~~~~~~~~~  111 (249)
T cd02525          87 RVDAHA-VYPKDYILELVEALKRTGA  111 (249)
T ss_pred             EECCCc-cCCHHHHHHHHHHHhcCCC
Confidence            999998 6799999999987765544

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.62  E-value=2.4  Score=32.12  Aligned_cols=161  Identities=15%  Similarity=0.121  Sum_probs=89.1

Q ss_pred             ehHHHHHHHHhcCCCCCeEEEEeCC-C---ChHHHHHHHhhcCCcEEEecCCccHHHHHHHHH-HcccCCCCEEEEEeCC
Q 028320           12 PIALYSFYTFSRMVEVKEIVVVCDP-S---YSDIFEETKEKINVDLKFSLPGKERQDSVYSGL-QEVDFNSELVCIHDSA   86 (210)
Q Consensus        12 pli~~~i~~~~~~~~~~~ivVv~~~-~---~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l-~~~~~~~d~vl~~~~d   86 (210)
                      -|++|++++..+.....+.+.-+++ +   +...++.++   |....+.+.|+...+-+.... ..+. .+..|+++--|
T Consensus        38 ~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~L---g~~lvyqpqGdd~gdRlars~~~a~~-~~~~VliIg~D  113 (211)
T COG3222          38 QLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWL---GSFLVYQPQGDDLGDRLARSHVDAFD-GSYPVLIIGMD  113 (211)
T ss_pred             HHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHh---hhheeecccCCCHHHHHHHHHHHHhc-CCCcEEEEecC
Confidence            4789999998877655555544443 1   123344443   434556665554444444332 2222 23678888899


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhcCC--CC
Q 028320           87 RPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGL--EV  164 (210)
Q Consensus        87 ~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~~~--~~  164 (210)
                      .|-++.+.+..++.++....++.-  |..       ++|+..--+.|      ..|++|+.          ...|.  .+
T Consensus       114 cP~lt~elLa~a~taL~~~paVLG--pa~-------dGGy~llgLrr------~~pe~fe~----------ipwg~~~v~  168 (211)
T COG3222         114 CPGLTAELLADAFTALLQIPAVLG--PAF-------DGGYYLLGLRR------FAPELFEA----------IPWGTPDVL  168 (211)
T ss_pred             CCccCHHHHHHHHHHHhcCcceec--ccc-------cCcEEEEEeec------cCHHHHhc----------CCCCCchHH
Confidence            999999999999988866654432  222       24432110111      02333321          00110  00


Q ss_pred             CcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320          165 TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       165 ~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      .-..+.++++|..++.++   ...|||-|+|+.++.....
T Consensus       169 ~lTl~~lrqng~~~~llp---~L~DvDrpdDLp~l~~~~~  205 (211)
T COG3222         169 ELTLKALRQNGIDVYLLP---RLGDVDRPDDLPLLRDCCA  205 (211)
T ss_pred             HHHHHHHHHcCCcccccC---ccccCCCcchhHHHHHhcc
Confidence            001334556676665453   5789999999998877654

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=93.59  E-value=2  Score=34.88  Aligned_cols=69  Identities=14%  Similarity=0.066  Sum_probs=41.9

Q ss_pred             HHHHHhhcCCc-EEEecCCc---cHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHH---HHHhcCCeEEeee
Q 028320           42 FEETKEKINVD-LKFSLPGK---ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM---DALRVGAAVLGVP  113 (210)
Q Consensus        42 i~~~~~~~~~~-v~~~~~~~---~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~---~~~~~~~~~~~~~  113 (210)
                      +.+.+++.+.. ........   +++.+.-.|++...  +|+++++|+|. +++++.++++++   .+.....++.+.|
T Consensus        52 l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~--~d~l~flD~D~-i~~~~~i~~~~~~~~~l~~~~~~~~~~p  127 (281)
T PF10111_consen   52 LKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYAR--GDYLIFLDADC-IPSPDFIEKLLNHVKKLDKNPNAFLVYP  127 (281)
T ss_pred             HHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcC--CCEEEEEcCCe-eeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            45556655543 21222212   34444555666654  79999999998 568999999999   4544443444444

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=93.56  E-value=2.4  Score=35.29  Aligned_cols=92  Identities=13%  Similarity=0.105  Sum_probs=55.9

Q ss_pred             CCeehHHHHHHHHh----cCCCCCeEEEEeCCCChHHHHHH----HhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCC
Q 028320            9 LGQPIALYSFYTFS----RMVEVKEIVVVCDPSYSDIFEET----KEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         9 ~gkpli~~~i~~~~----~~~~~~~ivVv~~~~~~~~i~~~----~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d   78 (210)
                      |+..-|..+++++.    +...--+|+||-+... +...+.    .++.+..+..+  ....+...++..|++...  .|
T Consensus        16 NE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~-D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~--gd   92 (325)
T PRK10714         16 NEQESLPELIRRTTAACESLGKEYEILLIDDGSS-DNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVT--GD   92 (325)
T ss_pred             CchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCC-CcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCC--CC
Confidence            44445555555543    3322236666544322 223333    33334444332  333345678889998865  79


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      +++++|+|.- .+++.+.++++.+.+
T Consensus        93 ~vv~~DaD~q-~~p~~i~~l~~~~~~  117 (325)
T PRK10714         93 LIITLDADLQ-NPPEEIPRLVAKADE  117 (325)
T ss_pred             EEEEECCCCC-CCHHHHHHHHHHHHh
Confidence            9999999998 599999999998864

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=93.54  E-value=1.8  Score=32.63  Aligned_cols=95  Identities=12%  Similarity=0.086  Sum_probs=59.2

Q ss_pred             cCCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCc--EEEecC--CccHHHHHHHHHHccc-CCCCEEE
Q 028320            8 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVD--LKFSLP--GKERQDSVYSGLQEVD-FNSELVC   81 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~--v~~~~~--~~~~~~si~~~l~~~~-~~~d~vl   81 (210)
                      .++...|..+++++.+... -.+|+|+-+... +...++++++...  +.+...  ..+...++..|++... .+.|+++
T Consensus         6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~   84 (202)
T cd04185           6 YNRLDLLKECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIW   84 (202)
T ss_pred             eCCHHHHHHHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhccCCCEEE
Confidence            4666788999999876532 246666644332 4455666655432  233321  2222444555555442 2478999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHh
Q 028320           82 IHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      ++++|. .+.++.++.+++.+..
T Consensus        85 ~ld~D~-~~~~~~l~~l~~~~~~  106 (202)
T cd04185          85 LMDDDA-IPDPDALEKLLAYADK  106 (202)
T ss_pred             EeCCCC-CcChHHHHHHHHHHhc
Confidence            999998 6689999999988873

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=93.50  E-value=2.3  Score=32.45  Aligned_cols=93  Identities=13%  Similarity=0.017  Sum_probs=58.1

Q ss_pred             CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320            9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR   87 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~   87 (210)
                      +..+.|..+++++.+... ..+|+||-+... +...+.++..+  +.+.....+...+.-.|+....  .++++++++|.
T Consensus         9 n~~~~l~~~l~sl~~q~~~~~evivvdd~s~-d~~~~~~~~~~--~~~~~~~~g~~~a~n~g~~~a~--~~~i~~~D~D~   83 (221)
T cd02522           9 NEAENLPRLLASLRRLNPLPLEIIVVDGGST-DGTVAIARSAG--VVVISSPKGRARQMNAGAAAAR--GDWLLFLHADT   83 (221)
T ss_pred             CcHHHHHHHHHHHHhccCCCcEEEEEeCCCC-ccHHHHHhcCC--eEEEeCCcCHHHHHHHHHHhcc--CCEEEEEcCCC
Confidence            445578888888766432 246766644432 34445555533  4444433344555556777765  78999999997


Q ss_pred             CCCCHHHHHHHHHHHHhcCC
Q 028320           88 PLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        88 Pli~~~~i~~~i~~~~~~~~  107 (210)
                       .+++..+++++......+.
T Consensus        84 -~~~~~~l~~l~~~~~~~~~  102 (221)
T cd02522          84 -RLPPDWDAAIIETLRADGA  102 (221)
T ss_pred             -CCChhHHHHHHHHhhcCCc
Confidence             5589999998766654443

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=93.47  E-value=1.7  Score=34.15  Aligned_cols=95  Identities=17%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             CCeehHHHHHHHHhcCC-C--CCeEEEEeCCCChHHHHHHHh----hcC-CcEEEec--CCccHHHHHHHHHHcccCCCC
Q 028320            9 LGQPIALYSFYTFSRMV-E--VKEIVVVCDPSYSDIFEETKE----KIN-VDLKFSL--PGKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~-~--~~~ivVv~~~~~~~~i~~~~~----~~~-~~v~~~~--~~~~~~~si~~~l~~~~~~~d   78 (210)
                      ++..-|..+++.+.+.. .  --+|+||-+... +...++++    .++ ..+.++.  +..+...+...|++...  .+
T Consensus        19 ne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~-D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~--g~   95 (243)
T PLN02726         19 NERLNIALIVYLIFKALQDVKDFEIIVVDDGSP-DGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS--GD   95 (243)
T ss_pred             CchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC-CCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC--CC
Confidence            44555666665554321 1  125666543322 33333333    333 2343332  22234566777888764  78


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +++++++|.- .+++.+.++++.+...++
T Consensus        96 ~i~~lD~D~~-~~~~~l~~l~~~~~~~~~  123 (243)
T PLN02726         96 FVVIMDADLS-HHPKYLPSFIKKQRETGA  123 (243)
T ss_pred             EEEEEcCCCC-CCHHHHHHHHHHHHhcCC
Confidence            9999999997 599999999988765554

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=93.43  E-value=2.8  Score=36.39  Aligned_cols=95  Identities=7%  Similarity=0.082  Sum_probs=60.1

Q ss_pred             cCCeehHHHHHHHHhcCCCC-C--eEEEEeCCCChHHHHHHH----hhcC-CcEEEecCCccHHHHHHHHHHcccCCCCE
Q 028320            8 LLGQPIALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEETK----EKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~-~--~ivVv~~~~~~~~i~~~~----~~~~-~~v~~~~~~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .|+...|..+++++.+...- +  +|+|+-+.. .+...+.+    +.++ ..+.......+...++-.|++...  .++
T Consensus        58 yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~S-tD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s~--g~~  134 (439)
T TIGR03111        58 YNSEDTLFNCIESIYNQTYPIELIDIILANNQS-TDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSI--GKY  134 (439)
T ss_pred             CCChHHHHHHHHHHHhcCCCCCCeEEEEEECCC-ChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHcc--CCE
Confidence            36777889999998765432 2  355553332 23333332    2332 223333333344667778888764  789


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      |+++|+|.=+ +++.++++++.+.+..
T Consensus       135 v~~~DaD~~~-~~d~L~~l~~~f~~~~  160 (439)
T TIGR03111       135 IIHIDSDGKL-HKDAIKNMVTRFENNP  160 (439)
T ss_pred             EEEECCCCCc-ChHHHHHHHHHHHhCC
Confidence            9999999854 9999999999887543

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=93.23  E-value=2.2  Score=34.76  Aligned_cols=96  Identities=14%  Similarity=0.005  Sum_probs=60.1

Q ss_pred             CCe-ehHHHHHHHHhcCCCC---CeEEEEeCCCChHHHHHHH-----hhcCCcEEEecC--CccHHHHHHHHHHcccCCC
Q 028320            9 LGQ-PIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETK-----EKINVDLKFSLP--GKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         9 ~gk-pli~~~i~~~~~~~~~---~~ivVv~~~~~~~~i~~~~-----~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~   77 (210)
                      +.. ..|..+++++.+...-   .+||||-+... +...+.+     ......+.++..  ..+...+.-.|++...  .
T Consensus         8 N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~-d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--g   84 (299)
T cd02510           8 NEALSTLLRTVHSVINRTPPELLKEIILVDDFSD-KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT--G   84 (299)
T ss_pred             cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC-chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc--C
Confidence            444 5888899988754321   37777754432 2222222     222234555432  2233555666777764  7


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAA  108 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~  108 (210)
                      ++++++++|.=+ +++-++.+++.+...+.+
T Consensus        85 d~i~fLD~D~~~-~~~wL~~ll~~l~~~~~~  114 (299)
T cd02510          85 DVLVFLDSHCEV-NVGWLEPLLARIAENRKT  114 (299)
T ss_pred             CEEEEEeCCccc-CccHHHHHHHHHHhCCCe
Confidence            999999999876 899999999988765443

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=93.15  E-value=2.3  Score=36.99  Aligned_cols=93  Identities=12%  Similarity=0.054  Sum_probs=59.5

Q ss_pred             CCeehHHHHHHHHhcCCCC-CeEEEEeCCCCh---HHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCCEEEE
Q 028320            9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYS---DIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSELVCI   82 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~---~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d~vl~   82 (210)
                      |...-|..+++++.+.... -+|+|+.+....   +.+++..++++ .+.++  .+..+...++..|+....  .|++++
T Consensus        85 NE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~~n~Gka~AlN~gl~~a~--~d~iv~  161 (444)
T PRK14583         85 NEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLAHNQGKAIALRMGAAAAR--SEYLVC  161 (444)
T ss_pred             CCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeCCCCCHHHHHHHHHHhCC--CCEEEE
Confidence            4556688899988765432 367776554331   22233333332 23333  233345677788887754  799999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhc
Q 028320           83 HDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        83 ~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      +|+|. ..+++.+.++++.+.+.
T Consensus       162 lDAD~-~~~~d~L~~lv~~~~~~  183 (444)
T PRK14583        162 IDGDA-LLDKNAVPYLVAPLIAN  183 (444)
T ss_pred             ECCCC-CcCHHHHHHHHHHHHhC
Confidence            99998 57999999999887654

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=93.04  E-value=2.8  Score=31.66  Aligned_cols=94  Identities=11%  Similarity=0.087  Sum_probs=58.7

Q ss_pred             cCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hc-CCcEEEec-----CCccHHHHHHHHHHcccC-----
Q 028320            8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KI-NVDLKFSL-----PGKERQDSVYSGLQEVDF-----   75 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~-~~~v~~~~-----~~~~~~~si~~~l~~~~~-----   75 (210)
                      .++...|..+++++.+...-.+|+|+-+... +...++++ .. ...+.++.     ...+...++..|++.+..     
T Consensus         6 ~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~   84 (191)
T cd06436           6 LNEEAVIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEE   84 (191)
T ss_pred             cccHHHHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhcccc
Confidence            4677788999999876542236666655443 44445554 21 22344332     123446777778877531     


Q ss_pred             ----CCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320           76 ----NSELVCIHDSARPLVLSKDVQKVLMDAL  103 (210)
Q Consensus        76 ----~~d~vl~~~~d~Pli~~~~i~~~i~~~~  103 (210)
                          +.++|+++++|.- ++++.++.+...+.
T Consensus        85 g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~  115 (191)
T cd06436          85 GADPERVIIAVIDADGR-LDPNALEAVAPYFS  115 (191)
T ss_pred             ccCCCccEEEEECCCCC-cCHhHHHHHHHhhc
Confidence                2479999999986 78888888776554

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=92.62  E-value=1.7  Score=37.17  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=65.3

Q ss_pred             CCee-hHHHHHHHHhcCCCCC-eEEEEeCCCChHHHHHHHhhcCC----cEEEe---cCCccHHHHHHHHHHcccCCCCE
Q 028320            9 LGQP-IALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKINV----DLKFS---LPGKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         9 ~gkp-li~~~i~~~~~~~~~~-~ivVv~~~~~~~~i~~~~~~~~~----~v~~~---~~~~~~~~si~~~l~~~~~~~d~   79 (210)
                      |..+ .++.+++++.+...-. +++|+.+... +...+.+++++.    .+...   ........++..|+....  .|+
T Consensus        64 nE~~~~~~~~l~s~~~~dyp~~evivv~d~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~--~d~  140 (439)
T COG1215          64 NEEPEVLEETLESLLSQDYPRYEVIVVDDGST-DETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAK--GDV  140 (439)
T ss_pred             CCchhhHHHHHHHHHhCCCCCceEEEECCCCC-hhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcC--CCE
Confidence            5666 8999999998776443 6777776443 445555555432    23332   122233667778887765  799


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAA  108 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~  108 (210)
                      |++.|+|. ...++.+.+++..+...+.+
T Consensus       141 V~~~DaD~-~~~~d~l~~~~~~f~~~~~~  168 (439)
T COG1215         141 VVILDADT-VPEPDALRELVSPFEDPPVG  168 (439)
T ss_pred             EEEEcCCC-CCChhHHHHHHhhhcCCCee
Confidence            99999998 46889999999888765443

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=92.22  E-value=4.6  Score=31.60  Aligned_cols=93  Identities=10%  Similarity=0.094  Sum_probs=59.5

Q ss_pred             CCeehHHHHHHHHhcCCCC-C--eEEEEeCCCChHHHHHHHhhcCC----cEEEecC--CccHHHHHHHHHHcccCCCCE
Q 028320            9 LGQPIALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEETKEKINV----DLKFSLP--GKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~~-~--~ivVv~~~~~~~~i~~~~~~~~~----~v~~~~~--~~~~~~si~~~l~~~~~~~d~   79 (210)
                      |..-.|..+++++.+...- +  +|+||.+... +...++++++..    .+.....  ..+...++..|++...  .|+
T Consensus        11 Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~-d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~--gd~   87 (241)
T cd06427          11 KEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD-EETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR--GEY   87 (241)
T ss_pred             CcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC-chHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--CCE
Confidence            4445678888888764321 1  4655544433 344555555432    3333332  2234667778888764  799


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      |+++++|.= +.++.+.++++.+...
T Consensus        88 i~~~DaD~~-~~~~~l~~~~~~~~~~  112 (241)
T cd06427          88 VVIYDAEDA-PDPDQLKKAVAAFARL  112 (241)
T ss_pred             EEEEcCCCC-CChHHHHHHHHHHHhc
Confidence            999999985 7899999999988643

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=91.80  E-value=3.4  Score=35.14  Aligned_cols=98  Identities=10%  Similarity=0.022  Sum_probs=61.8

Q ss_pred             cCCeehHHHHHHHHhcCCCC--CeEEEEeCCCChHHHHHHHhh----cC--CcEEEecCC------ccHHHHHHHHHHcc
Q 028320            8 LLGQPIALYSFYTFSRMVEV--KEIVVVCDPSYSDIFEETKEK----IN--VDLKFSLPG------KERQDSVYSGLQEV   73 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~--~~ivVv~~~~~~~~i~~~~~~----~~--~~v~~~~~~------~~~~~si~~~l~~~   73 (210)
                      -|+.+.|..+++++.+...-  -+|+||-+... +...+++++    ++  ..+.++.+.      .....++..|++..
T Consensus        49 ~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~St-D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A  127 (384)
T TIGR03469        49 RNEADVIGECVTSLLEQDYPGKLHVILVDDHST-DGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAA  127 (384)
T ss_pred             CCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCC-CcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHH
Confidence            36778899999998765432  26776655432 333444433    22  134444321      12345666777765


Q ss_pred             cC---CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           74 DF---NSELVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        74 ~~---~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      ..   +.|+++++|+|.= +.++.++++++.+...+.
T Consensus       128 ~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~~~  163 (384)
T TIGR03469       128 RTLAPPADYLLLTDADIA-HGPDNLARLVARARAEGL  163 (384)
T ss_pred             hccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhCCC
Confidence            42   2689999999985 689999999998876553

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=91.41  E-value=4.9  Score=30.31  Aligned_cols=95  Identities=16%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             CCeehHHHHHHHHhcCCCC-CeEEEEeCCCCh---HHHHHHHhhcC-CcEEEecC----Cc-cHHHHHHHHHHcccCCCC
Q 028320            9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYS---DIFEETKEKIN-VDLKFSLP----GK-ERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~---~~i~~~~~~~~-~~v~~~~~----~~-~~~~si~~~l~~~~~~~d   78 (210)
                      ++.+-|..+++++.+...- -+|+||.+....   ..++++.++++ ..+.++..    |. ....++..|++...  .|
T Consensus        11 n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~--~d   88 (196)
T cd02520          11 GVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR--YD   88 (196)
T ss_pred             CCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC--CC
Confidence            5566788889988764321 366666554431   12233333433 23333322    11 12334556777654  79


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      +++++++|.- ++++.++.+++.+...+
T Consensus        89 ~i~~~D~D~~-~~~~~l~~l~~~~~~~~  115 (196)
T cd02520          89 ILVISDSDIS-VPPDYLRRMVAPLMDPG  115 (196)
T ss_pred             EEEEECCCce-EChhHHHHHHHHhhCCC
Confidence            9999999984 59999999998865433

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=91.31  E-value=3.2  Score=34.08  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=64.0

Q ss_pred             ceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-CCcEEEecCCccH--HHHHHHHHHcccCC-CCEE
Q 028320            5 YLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGKER--QDSVYSGLQEVDFN-SELV   80 (210)
Q Consensus         5 l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-~~~v~~~~~~~~~--~~si~~~l~~~~~~-~d~v   80 (210)
                      +...+...-+...+..+.+....+..+|+++....+...+.++.. ...+.++..+...  +.+.-.|+.....+ .+++
T Consensus         9 iv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~   88 (305)
T COG1216           9 IVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYV   88 (305)
T ss_pred             EEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEE
Confidence            345677788888888887776555555544543333344555554 3456665442222  23333344444222 2389


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAV  109 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~  109 (210)
                      +++..| =.+++..++++++.++..+.+.
T Consensus        89 l~LN~D-~~~~~~~l~~ll~~~~~~~~~~  116 (305)
T COG1216          89 LLLNPD-TVVEPDLLEELLKAAEEDPAAG  116 (305)
T ss_pred             EEEcCC-eeeChhHHHHHHHHHHhCCCCe
Confidence            999999 5679999999999998876543

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=90.86  E-value=5  Score=30.24  Aligned_cols=95  Identities=17%  Similarity=0.130  Sum_probs=55.4

Q ss_pred             cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCC---hHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCCEEE
Q 028320            8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~---~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl   81 (210)
                      .+....|..+++++.+...- -+|+||-+...   .+.+++...+++..+.+...  ..+...+...|+....  .++|+
T Consensus         7 yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~--g~~v~   84 (214)
T cd04196           7 YNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD--GDYVF   84 (214)
T ss_pred             cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC--CCEEE
Confidence            34555788888887654321 25666544322   12233333333323333322  2234556666776654  79999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           82 IHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      ++++|- .+.++.+..+++.+...
T Consensus        85 ~ld~Dd-~~~~~~l~~~~~~~~~~  107 (214)
T cd04196          85 FCDQDD-IWLPDKLERLLKAFLKD  107 (214)
T ss_pred             EECCCc-ccChhHHHHHHHHHhcC
Confidence            999995 55799999999885443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=90.85  E-value=6.2  Score=33.40  Aligned_cols=96  Identities=11%  Similarity=0.146  Sum_probs=59.3

Q ss_pred             CCeehHHHHHHHHhcCCCC-CeEEEEeCCCC---hHHHHHHHhhcC-CcEEEecC----Cc-cHHHHHHHHHHcccCCCC
Q 028320            9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKIN-VDLKFSLP----GK-ERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~---~~~i~~~~~~~~-~~v~~~~~----~~-~~~~si~~~l~~~~~~~d   78 (210)
                      |+.+-|..+++++.+...- -+|+|+.++..   .+.+++..++++ ..+.++..    |. ....++.++++..+  .|
T Consensus        51 nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~--ge  128 (373)
T TIGR03472        51 GDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHAR--HD  128 (373)
T ss_pred             CCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhcc--CC
Confidence            5778899999998765433 36777654432   122334444443 33544422    11 12344555555543  79


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +++++|+|. .++++-++.++..+++.+.
T Consensus       129 ~i~~~DaD~-~~~p~~L~~lv~~~~~~~v  156 (373)
T TIGR03472       129 ILVIADSDI-SVGPDYLRQVVAPLADPDV  156 (373)
T ss_pred             EEEEECCCC-CcChhHHHHHHHHhcCCCc
Confidence            999999997 5599999999988865443

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=90.78  E-value=5.4  Score=30.77  Aligned_cols=88  Identities=14%  Similarity=0.103  Sum_probs=56.0

Q ss_pred             ecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-CCcEEEec--CCccHHHHHHHHHHcccC-CCCEEE
Q 028320            7 PLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSL--PGKERQDSVYSGLQEVDF-NSELVC   81 (210)
Q Consensus         7 ~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-~~~v~~~~--~~~~~~~si~~~l~~~~~-~~d~vl   81 (210)
                      ..++. ..|..+++++.+.  ..+|+||=+... +..... ..+ ...+.++.  ...+...+.-.|++.... +.|+++
T Consensus         5 ~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~-~~~~~~-~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~   80 (237)
T cd02526           5 TYNPDLSKLKELLAALAEQ--VDKVVVVDNSSG-NDIELR-LRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVL   80 (237)
T ss_pred             EecCCHHHHHHHHHHHhcc--CCEEEEEeCCCC-ccHHHH-hhccCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEE
Confidence            45677 8899999998764  467777644433 222222 222 22333332  223345666778877642 469999


Q ss_pred             EEeCCCCCCCHHHHHHHH
Q 028320           82 IHDSARPLVLSKDVQKVL   99 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i   99 (210)
                      ++++|.-+ +++.++.++
T Consensus        81 ~lD~D~~~-~~~~l~~l~   97 (237)
T cd02526          81 LFDQDSVP-PPDMVEKLL   97 (237)
T ss_pred             EECCCCCc-CHhHHHHHH
Confidence            99999975 799999996

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=90.72  E-value=6.2  Score=36.66  Aligned_cols=98  Identities=14%  Similarity=0.167  Sum_probs=63.1

Q ss_pred             ceecCCee--hHHHHHHHHhcCCCC-C--eEEEEeCCC-----------------ChHHHHHHHhhcCCcEEEecCCc-c
Q 028320            5 YLPLLGQP--IALYSFYTFSRMVEV-K--EIVVVCDPS-----------------YSDIFEETKEKINVDLKFSLPGK-E   61 (210)
Q Consensus         5 l~~i~gkp--li~~~i~~~~~~~~~-~--~ivVv~~~~-----------------~~~~i~~~~~~~~~~v~~~~~~~-~   61 (210)
                      +.|.-+.+  +++.+++++.+...- +  +|+|+-|..                 ..+.++++++++++......... .
T Consensus       136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~  215 (713)
T TIGR03030       136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHA  215 (713)
T ss_pred             EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCC
Confidence            34555554  567889988765543 2  566664431                 12356677777764432212111 2


Q ss_pred             HHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           62 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        62 ~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      ...++-+|++..+  .|+++++|+|.= .+++.+++++..+...
T Consensus       216 KAgnLN~al~~a~--gd~Il~lDAD~v-~~pd~L~~~v~~f~~d  256 (713)
T TIGR03030       216 KAGNINNALKHTD--GELILIFDADHV-PTRDFLQRTVGWFVED  256 (713)
T ss_pred             ChHHHHHHHHhcC--CCEEEEECCCCC-cChhHHHHHHHHHHhC
Confidence            2566788888765  799999999995 4799999999888654

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2

Probab=90.22  E-value=2.2  Score=28.31  Aligned_cols=82  Identities=20%  Similarity=0.084  Sum_probs=48.1

Q ss_pred             CeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC-CcEEEecC-C--ccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320           10 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLP-G--KERQDSVYSGLQEVDFNSELVCIHDS   85 (210)
Q Consensus        10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~-~~v~~~~~-~--~~~~~si~~~l~~~~~~~d~vl~~~~   85 (210)
                      .-++|..-+.-..+.| +++++|..+... +...++++++. +.+..... .  ..+.....+++..-..+.+.++.+++
T Consensus         3 e~~~L~~wl~~~~~lG-~d~i~i~d~~s~-D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~   80 (97)
T PF13704_consen    3 EADYLPEWLAHHLALG-VDHIYIYDDGST-DGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDA   80 (97)
T ss_pred             hHHHHHHHHHHHHHcC-CCEEEEEECCCC-ccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEee
Confidence            3456777777776665 899999876554 44566776653 22222222 1  11233344444332235799999999


Q ss_pred             CCCCCCHH
Q 028320           86 ARPLVLSK   93 (210)
Q Consensus        86 d~Pli~~~   93 (210)
                      |.=+..+.
T Consensus        81 DEfl~~~~   88 (97)
T PF13704_consen   81 DEFLVPPP   88 (97)
T ss_pred             eEEEecCC
Confidence            98776554

>PRK10073 putative glycosyl transferase; Provisional

Probab=90.19  E-value=8.2  Score=32.14  Aligned_cols=97  Identities=15%  Similarity=0.051  Sum_probs=60.2

Q ss_pred             CCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhc---CCcEEEecC-CccHHHHHHHHHHcccCCCCEEEEE
Q 028320            9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI---NVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCIH   83 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~---~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~vl~~   83 (210)
                      +....|..+++++.+.... -+|+||-+... +...++++.+   ...+.+... ..+.+.+.-.|++...  .++++++
T Consensus        16 N~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt-D~t~~i~~~~~~~~~~i~vi~~~n~G~~~arN~gl~~a~--g~yi~fl   92 (328)
T PRK10073         16 NAGKDFRAFMESLIAQTWTALEIIIVNDGST-DNSVEIAKHYAENYPHVRLLHQANAGVSVARNTGLAVAT--GKYVAFP   92 (328)
T ss_pred             CCHHHHHHHHHHHHhCCCCCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHhCC--CCEEEEE
Confidence            6667899999998765322 25666544332 2233333332   123444332 2233555566888765  7999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320           84 DSARPLVLSKDVQKVLMDALRVGAAV  109 (210)
Q Consensus        84 ~~d~Pli~~~~i~~~i~~~~~~~~~~  109 (210)
                      ++|-= +.++.++.+++.+...+..+
T Consensus        93 D~DD~-~~p~~l~~l~~~~~~~~~dv  117 (328)
T PRK10073         93 DADDV-VYPTMYETLMTMALEDDLDV  117 (328)
T ss_pred             CCCCc-cChhHHHHHHHHHHhCCCCE
Confidence            99975 67999999998876655433

>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]

Probab=90.19  E-value=5.2  Score=30.74  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             CCeehHHHHHHHHhc-CCCCCeEEEEeCCCC--h-HHHHHHHhhcCC-cEEEecCCc--cHHHHHHHHHHcccCCCCEEE
Q 028320            9 LGQPIALYSFYTFSR-MVEVKEIVVVCDPSY--S-DIFEETKEKINV-DLKFSLPGK--ERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         9 ~gkpli~~~i~~~~~-~~~~~~ivVv~~~~~--~-~~i~~~~~~~~~-~v~~~~~~~--~~~~si~~~l~~~~~~~d~vl   81 (210)
                      .+-|++.|.+..... .+.--+|++|-+...  . +..+.+.+-||- ++.+.+...  +..++..+|+....  .++++
T Consensus        16 ~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~--g~fiv   93 (238)
T KOG2978|consen   16 ENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHAT--GDFIV   93 (238)
T ss_pred             CCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhcc--CCeEE
Confidence            355788887776543 332235655543321  1 222333333553 344433222  23667789998876  68999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           82 IHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      ++|+|.-- .|..|-++|+..++..
T Consensus        94 iMDaDlsH-hPk~ipe~i~lq~~~~  117 (238)
T KOG2978|consen   94 IMDADLSH-HPKFIPEFIRLQKEGN  117 (238)
T ss_pred             EEeCccCC-CchhHHHHHHHhhccC
Confidence            99998643 6788888988777654

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=90.16  E-value=6.8  Score=29.80  Aligned_cols=95  Identities=15%  Similarity=0.083  Sum_probs=56.7

Q ss_pred             CCeehHHHHHHHHhcCC-----CCCeEEEEeCCCChHHHHHHHh----hcCCcEEEec--CCccHHHHHHHHHHcccCCC
Q 028320            9 LGQPIALYSFYTFSRMV-----EVKEIVVVCDPSYSDIFEETKE----KINVDLKFSL--PGKERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~-----~~~~ivVv~~~~~~~~i~~~~~----~~~~~v~~~~--~~~~~~~si~~~l~~~~~~~   77 (210)
                      ++..-|..+++.+.+..     .-.+|+|+-+... +...+.++    +++..+.++.  ...+...++..|++...  .
T Consensus         7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~-D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~--g   83 (211)
T cd04188           7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK-DGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR--G   83 (211)
T ss_pred             ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC-CchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc--C
Confidence            44455666676665431     1246666643332 22333333    3343323332  22344677888888875  6


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      |+++++++|.- .+++.+..+++.+...+.
T Consensus        84 d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~  112 (211)
T cd04188          84 DYILFADADLA-TPFEELEKLEEALKTSGY  112 (211)
T ss_pred             CEEEEEeCCCC-CCHHHHHHHHHHHhccCC
Confidence            99999999975 789999999988554443

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=90.03  E-value=5.8  Score=33.15  Aligned_cols=93  Identities=16%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             cCCeehHHHHHHHHhcC---------CCCCeEEEEeCCCChHHHHHHHhhc-------CCcEEEec--CCccHHHHHHHH
Q 028320            8 LLGQPIALYSFYTFSRM---------VEVKEIVVVCDPSYSDIFEETKEKI-------NVDLKFSL--PGKERQDSVYSG   69 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~---------~~~~~ivVv~~~~~~~~i~~~~~~~-------~~~v~~~~--~~~~~~~si~~~   69 (210)
                      .|+.+-|..+++++.+.         ..--+|+||-+.. .+...++++++       +..+.++.  ...+...++..|
T Consensus        79 yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgS-tD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~G  157 (333)
T PTZ00260         79 YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGS-KDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIG  157 (333)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCC-CCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHH
Confidence            36666677777766431         1123666665432 23333333332       11244432  223446778889


Q ss_pred             HHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           70 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        70 l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      +....  .|+++++++|. -.+++.+..+++.+..
T Consensus       158 i~~a~--gd~I~~~DaD~-~~~~~~l~~l~~~l~~  189 (333)
T PTZ00260        158 MLASR--GKYILMVDADG-ATDIDDFDKLEDIMLK  189 (333)
T ss_pred             HHHcc--CCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence            98764  78999999998 4577888888887753

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=89.88  E-value=6.2  Score=28.96  Aligned_cols=90  Identities=10%  Similarity=0.034  Sum_probs=55.2

Q ss_pred             CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhc----CCcEEEe-cC--CccHHHHHHHHHHcccCCCCEE
Q 028320            9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKI----NVDLKFS-LP--GKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~----~~~v~~~-~~--~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      +....+..+++++.+... -.+|+|+-+... +...++++++    +.++..+ ..  +-....+.-.|++...  .+++
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~--g~~i   83 (182)
T cd06420           7 NRPEALELVLKSVLNQSILPFEVIIADDGST-EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK--GDYL   83 (182)
T ss_pred             CChHHHHHHHHHHHhccCCCCEEEEEeCCCc-hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc--CCEE
Confidence            455678889999876432 246776655443 3344444443    2223322 11  1122344555676654  7899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDA  102 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~  102 (210)
                      +++++|. .++++-+.++++.+
T Consensus        84 ~~lD~D~-~~~~~~l~~~~~~~  104 (182)
T cd06420          84 IFIDGDC-IPHPDFIADHIELA  104 (182)
T ss_pred             EEEcCCc-ccCHHHHHHHHHHh
Confidence            9999998 66899999998876

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=88.82  E-value=8  Score=29.58  Aligned_cols=98  Identities=15%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             cCCeehHHHHHHHHhcCCCC--CeEEEEeCCCChHHHHHHHhh----cC-CcEEEe--c--C--CccHHHHHHHHHHccc
Q 028320            8 LLGQPIALYSFYTFSRMVEV--KEIVVVCDPSYSDIFEETKEK----IN-VDLKFS--L--P--GKERQDSVYSGLQEVD   74 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~--~~ivVv~~~~~~~~i~~~~~~----~~-~~v~~~--~--~--~~~~~~si~~~l~~~~   74 (210)
                      .++...|..+++++.+...-  -+|+||-+... +...+++++    +. ..+.+.  .  .  ..+...+.-.|++...
T Consensus         6 yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~-d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~   84 (219)
T cd06913           6 HNGEQWLDECLESVLQQDFEGTLELSVFNDAST-DKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSS   84 (219)
T ss_pred             cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-ccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcC
Confidence            46667888999998764322  26666654432 222333333    22 122222  1  1  1233444556776654


Q ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320           75 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV  109 (210)
Q Consensus        75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~  109 (210)
                        .|+++++++|-- ..++.+.+++..+.+....+
T Consensus        85 --gd~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~  116 (219)
T cd06913          85 --GRYLCFLDSDDV-MMPQRIRLQYEAALQHPNSI  116 (219)
T ss_pred             --CCEEEEECCCcc-CChhHHHHHHHHHHhCCCcE
Confidence              799999999975 56677888877776544433

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=87.79  E-value=11  Score=29.12  Aligned_cols=94  Identities=16%  Similarity=0.090  Sum_probs=55.3

Q ss_pred             cCCeehHHHHHHHHhcCCCC-C--eEEEEeCCCCh--HHHHHHHhhc---CCcEEEecCC--cc-HHHHHHHHHHcccCC
Q 028320            8 LLGQPIALYSFYTFSRMVEV-K--EIVVVCDPSYS--DIFEETKEKI---NVDLKFSLPG--KE-RQDSVYSGLQEVDFN   76 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~-~--~ivVv~~~~~~--~~i~~~~~~~---~~~v~~~~~~--~~-~~~si~~~l~~~~~~   76 (210)
                      .|+...|..+++++.+.... +  +|+|+-++.+-  +.+++..+++   +.++..+...  .+ ...++-.|++..+  
T Consensus        10 yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~--   87 (232)
T cd06437          10 FNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAK--   87 (232)
T ss_pred             CCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCC--
Confidence            46677889999998764332 2  45555443321  1223332222   3344444221  11 2455667887764  


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      .++++++++|.= +.++.++.+...+..
T Consensus        88 ~~~i~~~DaD~~-~~~~~l~~~~~~~~~  114 (232)
T cd06437          88 GEYVAIFDADFV-PPPDFLQKTPPYFAD  114 (232)
T ss_pred             CCEEEEEcCCCC-CChHHHHHhhhhhcC
Confidence            799999999994 589999997665543

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=87.14  E-value=10  Score=28.02  Aligned_cols=93  Identities=14%  Similarity=0.085  Sum_probs=54.9

Q ss_pred             cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhcCCc-EEE-ecCCccHHHHHHHHHHcccCCCCEEEEEe
Q 028320            8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKINVD-LKF-SLPGKERQDSVYSGLQEVDFNSELVCIHD   84 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~~~~-v~~-~~~~~~~~~si~~~l~~~~~~~d~vl~~~   84 (210)
                      .++...|..+++++.+...- -+|+||-+.. .+...+.++++... ..+ .....+...+...|++...  .+++++++
T Consensus         7 ~n~~~~l~~~l~sl~~q~~~~~evivvDd~s-~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~--~~~v~~ld   83 (202)
T cd06433           7 YNQAETLEETIDSVLSQTYPNIEYIVIDGGS-TDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALAT--GDIIGFLN   83 (202)
T ss_pred             cchHHHHHHHHHHHHhCCCCCceEEEEeCCC-CccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcC--CCEEEEeC
Confidence            35566788889988654322 2566653322 23345555555432 222 2233344666777888765  78999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh
Q 028320           85 SARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        85 ~d~Pli~~~~i~~~i~~~~~  104 (210)
                      +|.=+. ++.+..++..+..
T Consensus        84 ~D~~~~-~~~~~~~~~~~~~  102 (202)
T cd06433          84 SDDTLL-PGALLAVVAAFAE  102 (202)
T ss_pred             CCcccC-chHHHHHHHHHHh
Confidence            998555 5666666644443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=86.95  E-value=14  Score=29.58  Aligned_cols=90  Identities=9%  Similarity=-0.036  Sum_probs=56.8

Q ss_pred             ehHHHHHHHHhcCCCCCeEEEEeCCC-ChHHHHHHHhhcCCcEEEecCC--ccHHHHHHHHHHccc-CCCCEEEEEeCCC
Q 028320           12 PIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVD-FNSELVCIHDSAR   87 (210)
Q Consensus        12 pli~~~i~~~~~~~~~~~ivVv~~~~-~~~~i~~~~~~~~~~v~~~~~~--~~~~~si~~~l~~~~-~~~d~vl~~~~d~   87 (210)
                      ..|..+++++.+.  ..+|+||=+.. ..+.+.++.+++ ..+.++..+  .+.+.+.-.|++.+. ...|+|++++.|.
T Consensus         8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~-~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~   84 (281)
T TIGR01556         8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRG-QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDS   84 (281)
T ss_pred             HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccC-CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4677888887754  36777765542 112344444433 245554322  233556666776653 3579999999999


Q ss_pred             CCCCHHHHHHHHHHHHhc
Q 028320           88 PLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        88 Pli~~~~i~~~i~~~~~~  105 (210)
                      -+ .++.+..+++.+...
T Consensus        85 ~~-~~~~l~~l~~~~~~~  101 (281)
T TIGR01556        85 RP-GNAFLAAQWKLLSAE  101 (281)
T ss_pred             CC-CHHHHHHHHHHHHhc
Confidence            55 689999999888654

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=86.44  E-value=27  Score=32.47  Aligned_cols=99  Identities=5%  Similarity=0.050  Sum_probs=60.9

Q ss_pred             ceecCCeeh------HHHHHHHHhcCCCCC--eEEEEeCCCChHH--------HHHHHhhcC--CcEEEec---CCccHH
Q 028320            5 YLPLLGQPI------ALYSFYTFSRMVEVK--EIVVVCDPSYSDI--------FEETKEKIN--VDLKFSL---PGKERQ   63 (210)
Q Consensus         5 l~~i~gkpl------i~~~i~~~~~~~~~~--~ivVv~~~~~~~~--------i~~~~~~~~--~~v~~~~---~~~~~~   63 (210)
                      +.|+.|.+.      |+-+++.+.+.+.-+  +++|+.|..+ +.        +.+++++++  ..+.+..   +.....
T Consensus       129 liP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d-~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~Ka  207 (691)
T PRK05454        129 LMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRD-PDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKA  207 (691)
T ss_pred             EEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCC-hhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccH
Confidence            455556653      555566555444333  5677666654 22        235556653  2444432   211225


Q ss_pred             HHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           64 DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        64 ~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      ..+..+++....+.|+++++|+|. .++++.+.+++..+...
T Consensus       208 GNl~~~~~~~~~~~eyivvLDADs-~m~~d~L~~lv~~m~~d  248 (691)
T PRK05454        208 GNIADFCRRWGGAYDYMVVLDADS-LMSGDTLVRLVRLMEAN  248 (691)
T ss_pred             HHHHHHHHhcCCCcCEEEEEcCCC-CCCHHHHHHHHHHHhhC
Confidence            566677776554679999999998 67899999999988644

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=85.10  E-value=1.7  Score=38.29  Aligned_cols=97  Identities=13%  Similarity=0.089  Sum_probs=61.9

Q ss_pred             CCccceec---CCeehHHHHHHHHhcCC------------CCCeEEEEeCCCChHHHHHHHhhc---CC---cEE-----
Q 028320            1 MPKQYLPL---LGQPIALYSFYTFSRMV------------EVKEIVVVCDPSYSDIFEETKEKI---NV---DLK-----   54 (210)
Q Consensus         1 ~~K~l~~i---~gkpli~~~i~~~~~~~------------~~~~ivVv~~~~~~~~i~~~~~~~---~~---~v~-----   54 (210)
                      .||+++++   .|+|++++.++++....            ..-.++|.|+....+.+.+..+++   |.   .+.     
T Consensus       124 ~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~  203 (482)
T PTZ00339        124 KPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQS  203 (482)
T ss_pred             CCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecC
Confidence            49999999   59999999999997641            123567777765446677766642   21   111     


Q ss_pred             ---------------------EecCCccHHHHHHHHHHc------ccC-CCCEEEEEeCCCCCC---CHHHHHHHHH
Q 028320           55 ---------------------FSLPGKERQDSVYSGLQE------VDF-NSELVCIHDSARPLV---LSKDVQKVLM  100 (210)
Q Consensus        55 ---------------------~~~~~~~~~~si~~~l~~------~~~-~~d~vl~~~~d~Pli---~~~~i~~~i~  100 (210)
                                           +.++|   ...+..+|..      +.. .-+++.+...|.++.   +|..|-.+++
T Consensus       204 ~~P~i~~~~g~ill~~~~~i~~~P~G---nGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~  277 (482)
T PTZ00339        204 SLPCYDENTGRFIMSSQGSLCTAPGG---NGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASS  277 (482)
T ss_pred             CcceEecCCCCcccCCCCceeeCCCC---CcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHH
Confidence                                 11112   3445555532      221 357899999999965   7777776664

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=84.94  E-value=3.7  Score=31.55  Aligned_cols=96  Identities=13%  Similarity=0.108  Sum_probs=55.4

Q ss_pred             CCeehHHHHHHHHhcCCCC-CeEEEEeCCCC--h-HHHHHHHhhcCC-cEEEecCCc-----cHHHHHHHHHHcccCCCC
Q 028320            9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSY--S-DIFEETKEKINV-DLKFSLPGK-----ERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~--~-~~i~~~~~~~~~-~v~~~~~~~-----~~~~si~~~l~~~~~~~d   78 (210)
                      +..+.|..+++++.+.... -+|+|+.+...  . +.++++++.++. .+.++....     ....++..|++...  .|
T Consensus        11 ~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~--~d   88 (228)
T PF13641_consen   11 NEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAAR--GD   88 (228)
T ss_dssp             S-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-----S
T ss_pred             CCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcC--CC
Confidence            4557889999998864321 24555553322  1 235555556542 345443211     23556677887765  79


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +++++++|.=+ +++.++.++..+...+.
T Consensus        89 ~i~~lD~D~~~-~p~~l~~~~~~~~~~~~  116 (228)
T PF13641_consen   89 YILFLDDDTVL-DPDWLERLLAAFADPGV  116 (228)
T ss_dssp             EEEEE-SSEEE--CHHHHHHHHHHHBSS-
T ss_pred             EEEEECCCcEE-CHHHHHHHHHHHHhCCC
Confidence            99999999765 99999999999844443

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=84.72  E-value=1.3  Score=37.00  Aligned_cols=97  Identities=11%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             CCccceecC---CeehHHHHHHHHhcCCC----------CCeEEEEeCCCChHHHHHHHhh---cCC---cEEE------
Q 028320            1 MPKQYLPLL---GQPIALYSFYTFSRMVE----------VKEIVVVCDPSYSDIFEETKEK---INV---DLKF------   55 (210)
Q Consensus         1 ~~K~l~~i~---gkpli~~~i~~~~~~~~----------~~~ivVv~~~~~~~~i~~~~~~---~~~---~v~~------   55 (210)
                      .||.++|++   |+|++++.++++.....          .=.+++.|+...-+.+.+..++   +|.   .+.+      
T Consensus        33 ~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~  112 (323)
T cd04193          33 GPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGML  112 (323)
T ss_pred             CCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHHhCCcCCCCCceEEEEecCce
Confidence            389999998   79999999999987421          1245677774433556666664   232   1211      


Q ss_pred             -------------------ecCCccHHHHHHHHHHc------cc-CCCCEEEEEeCCCCCC---CHHHHHHHHH
Q 028320           56 -------------------SLPGKERQDSVYSGLQE------VD-FNSELVCIHDSARPLV---LSKDVQKVLM  100 (210)
Q Consensus        56 -------------------~~~~~~~~~si~~~l~~------~~-~~~d~vl~~~~d~Pli---~~~~i~~~i~  100 (210)
                                         .++|   ...+..+|..      +. ..-+++.+...|.++.   +|..+-.+++
T Consensus       113 P~~~~~g~~~l~~~~~~~~~P~G---hG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~  183 (323)
T cd04193         113 PCVDFDGKILLEEKGKIAMAPNG---NGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFIGFCIS  183 (323)
T ss_pred             eeEcCCCccccCCCCccccCCCC---chHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccccCHHHhHHHHH
Confidence                               1112   3445554432      22 2358999999999864   6666665554

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.94  E-value=12  Score=25.12  Aligned_cols=74  Identities=20%  Similarity=0.219  Sum_probs=48.1

Q ss_pred             EEEEeCC-CChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           30 IVVVCDP-SYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        30 ivVv~~~-~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      |+|+.+. +....+++.++++|....+.  .++.....+   .++..=.+.|.|++...   +++.+....+-+.++..+
T Consensus         2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~---~l~~~i~~aD~VIv~t~---~vsH~~~~~vk~~akk~~   75 (97)
T PF10087_consen    2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKAS---RLPSKIKKADLVIVFTD---YVSHNAMWKVKKAAKKYG   75 (97)
T ss_pred             EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchh---HHHHhcCCCCEEEEEeC---CcChHHHHHHHHHHHHcC
Confidence            5677773 33367888999999887777  332222211   12221124788888877   999999999988887766


Q ss_pred             CeE
Q 028320          107 AAV  109 (210)
Q Consensus       107 ~~~  109 (210)
                      .-+
T Consensus        76 ip~   78 (97)
T PF10087_consen   76 IPI   78 (97)
T ss_pred             CcE
Confidence            433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1w77_A	228	2c-methyl-d-erythritol 4-phosphate Cytidylyltransfe		8e-98
2ycm_A	227	Inhibitors Of Herbicidal Target Ispd Length = 227		1e-97
2yc3_A	228	Inhibitors Of The Herbicidal Target Ispd Length = 2		1e-97
1i52_A	236	Crystal Structure Of 4-Diphosphocytidyl-2-C-Methyle		1e-21
1vgt_A	238	Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D		1e-21
3n9w_A	235	Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phos		1e-21
1h3m_A	235	Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythri		1e-21
2px7_A	236	Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phos		9e-19
2xwl_A	223	Crystal Structure Of Ispd From Mycobacterium Smegma		3e-18
1vgz_A	241	Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D		2e-15
1vgw_A	231	Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D		2e-15
1vpa_A	234	Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phos		1e-14
2xwn_A	233	Crystal Structure Of Ispd From Mycobacterium Tuberc		2e-13
3okr_A	231	Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phos		2e-13
3q7u_A	231	Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphat		3e-13
3f1c_A	246	Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phos		6e-13
1w55_A	371	Structure Of The Bifunctional Ispdf From Campylobac		5e-11
2vsh_A	236	Synthesis Of Cdp-Activated Ribitol For Teichoic Aci		1e-10

>pdb|1W77|A Chain A, 2c-methyl-d-erythritol 4-phosphate Cytidylyltransferase (ispd) From Arabidopsis Thaliana Length = 228

Iteration: 1
 Score =  352 bits (903), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 169/207 (81%), Positives = 190/207 (91%)
Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL+F++PGK
Sbjct: 22  MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGK 81
Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D   VGAAVLGVPAKATIKE
Sbjct: 82  ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE 141
Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
            NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV  EGLEVTDDVSIVE+LKHPVY+
Sbjct: 142 VNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYV 201
Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSS 207
           ++GSYTNIKVTTPDDLL+AERIL+  S
Sbjct: 202 SQGSYTNIKVTTPDDLLLAERILSEDS 228

>pdb|2YCM|A Chain A, Inhibitors Of Herbicidal Target Ispd Length = 227

Iteration: 1
 Score =  351 bits (901), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/204 (82%), Positives = 188/204 (92%)
Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL F++PGK
Sbjct: 21  MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGK 80
Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D   VGAAVLGVPAKATIKE
Sbjct: 81  ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE 140
Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
            NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV  EGLEVTDDVSIVE+LKHPVY+
Sbjct: 141 VNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYV 200
Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           ++GSYTNIKVTTPDDLL+AERIL+
Sbjct: 201 SQGSYTNIKVTTPDDLLLAERILS 224

>pdb|2YC3|A Chain A, Inhibitors Of The Herbicidal Target Ispd Length = 228

Iteration: 1
 Score =  351 bits (901), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/204 (82%), Positives = 188/204 (92%)
Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL F++PGK
Sbjct: 22  MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGK 81
Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D   VGAAVLGVPAKATIKE
Sbjct: 82  ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE 141
Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
            NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV  EGLEVTDDVSIVE+LKHPVY+
Sbjct: 142 VNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYV 201
Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           ++GSYTNIKVTTPDDLL+AERIL+
Sbjct: 202 SQGSYTNIKVTTPDDLLLAERILS 225

>pdb|1I52|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me) Synthase (Ygbp) Involved In Mevalonate Independent Isoprenoid Biosynthesis Length = 236

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 6/202 (2%)
Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G E
Sbjct: 26  PKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDE 84
Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIK 119
           R DSV +GL+    +++ V +HD+ARP +   D+ ++L   +  R G  +L  P + T+K
Sbjct: 85  RADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDTMK 142
Query: 120 EAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
            A   ++ +  T+DR  LW   TPQ    +LL         EG  +TD+ S +E+     
Sbjct: 143 RAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHP 202
Query: 179 YITEGSYTNIKVTTPDDLLIAE 200
            + EG   NIKVT P+DL +AE
Sbjct: 203 QLVEGRADNIKVTRPEDLALAE 224

>pdb|1VGT|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase Length = 238

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 6/202 (2%)
Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G E
Sbjct: 28  PKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDE 86
Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIK 119
           R DSV +GL+    +++ V +HD+ARP +   D+ ++L   +  R G  +L  P + T+K
Sbjct: 87  RADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDTMK 144
Query: 120 EAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
            A   ++ +  T+DR  LW   TPQ    +LL         EG  +TD+ S +E+     
Sbjct: 145 RAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHP 204
Query: 179 YITEGSYTNIKVTTPDDLLIAE 200
            + EG   NIKVT P+DL +AE
Sbjct: 205 QLVEGRADNIKVTRPEDLALAE 226

>pdb|3N9W|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) In Complex With 1,2-Propanediol Length = 235

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 6/202 (2%)
Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G E
Sbjct: 25  PKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDE 83
Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIK 119
           R DSV +GL+    +++ V +HD+ARP +   D+ ++L   +  R G  +L  P + T+K
Sbjct: 84  RADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDTMK 141
Query: 120 EAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
            A   ++ +  T+DR  LW   TPQ    +LL         EG  +TD+ S +E+     
Sbjct: 142 RAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHP 201
Query: 179 YITEGSYTNIKVTTPDDLLIAE 200
            + EG   NIKVT P+DL +AE
Sbjct: 202 QLVEGRADNIKVTRPEDLALAE 223

>pdb|1H3M|A Chain A, Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthetase Length = 235

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 6/202 (2%)
Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G E
Sbjct: 25  PKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDE 83
Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIK 119
           R DSV +GL+    +++ V +HD+ARP +   D+ ++L   +  R G  +L  P + T+K
Sbjct: 84  RADSVLTGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDTMK 141
Query: 120 EAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
            A   ++ +  T+DR  LW   TPQ    +LL         EG  +TD+ S +E+     
Sbjct: 142 RAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHP 201
Query: 179 YITEGSYTNIKVTTPDDLLIAE 200
            + EG   NIKVT P+DL +AE
Sbjct: 202 QLVEGRADNIKVTRPEDLALAE 223

>pdb|2PX7|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase From Thermus Thermophilus Hb8 Length = 236

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 13/206 (6%)
Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PK +L + G+ +  ++   F    +  E++V   P         +    +   F   G  
Sbjct: 43  PKAFLQVGGRTLLEWTLAAFR---DAAEVLVALPPG-------AEPPKGLGAVFLEGGAT 92
Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 121
           RQ SV   L+       LV +HD ARP V    V +VL  A R GAAV  +P   T+   
Sbjct: 93  RQASVARLLEAASL--PLVLVHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLMAP 150
Query: 122 NSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYIT 181
             E++  R + R+    +QTPQ     LL++      R+GLE +DD  +V+ L +PV + 
Sbjct: 151 EGEAYG-RVVPREAFRLVQTPQGFFTALLREAHAYARRKGLEASDDAQLVQALGYPVALV 209
Query: 182 EGSYTNIKVTTPDDLLIAERILNLSS 207
           EG  T  K+T P DL++AE +  + S
Sbjct: 210 EGEATAFKITHPQDLVLAEALARVWS 235

>pdb|2XWL|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis In Complex With Ctp And Mg Length = 223

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 10/205 (4%)
Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK- 60
           PK ++ L G P+  ++         +  IV+   P+ +D   E+K     +    + G  
Sbjct: 21  PKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTD---ESKLVFGGEDSVIVSGGV 77
Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI 118
           +R +SV   L E   ++E V +HD+AR L     + +V+  AL+ G  A V G+    TI
Sbjct: 78  DRTESVALAL-EAAGDAEFVLVHDAARALTPPALIARVVA-ALKEGHSAVVPGLAPADTI 135
Query: 119 KEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
           K  ++   V+ T +R  L  +QTPQ    D+L++ +      G  VTDD S+VE L  PV
Sbjct: 136 KAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYARATAGG--VTDDASLVEQLGTPV 193
Query: 179 YITEGSYTNIKVTTPDDLLIAERIL 203
            I +G     K+TTP DL++AE +L
Sbjct: 194 QIVDGDPLAFKITTPLDLVLAEAVL 218

>pdb|1VGZ|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase Length = 241

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 14/211 (6%)
Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDP--SYSDIFEETKEKINVDLKFSLPG 59
           PKQY+ +  + +  +    F R   V   VVV  P  +++D  +    ++ V   +   G
Sbjct: 25  PKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRV---WKNGG 81
Query: 60  KERQDSVYSG---LQEVDFNSEL--VCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVP 113
           + R ++V +G   L E    +E   + +HD+AR  + S+ + +++  A       +L VP
Sbjct: 82  QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVP 141
Query: 114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 173
              T+K A S   +  T+DR  LW+ QTPQ+ +  LL +     N  G  +TD+ S VE 
Sbjct: 142 VADTLKRAESGQ-ISATVDRSGLWQAQTPQLFQAGLLHRALAAENLGG--ITDEASAVEK 198
Query: 174 LKHPVYITEGSYTNIKVTTPDDLLIAERILN 204
           L     + +G   N+K+T P D  I   +L+
Sbjct: 199 LGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229

>pdb|1VGW|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase Length = 231

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 14/211 (6%)
Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDP--SYSDIFEETKEKINVDLKFSLPG 59
           PKQY+ +  + +  +    F R   V   VVV  P  +++D  +    ++ V   +   G
Sbjct: 25  PKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRV---WKNGG 81
Query: 60  KERQDSVYSG---LQEVDFNSEL--VCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVP 113
           + R ++V +G   L E    +E   + +HD+AR  + S+ + +++  A       +L VP
Sbjct: 82  QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVP 141
Query: 114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 173
              T+K A S   +  T+DR  LW+ QTPQ+ +  LL +     N  G  +TD+ S VE 
Sbjct: 142 VADTLKRAESGQ-ISATVDRSGLWQAQTPQLFQAGLLHRALAAENLGG--ITDEASAVEK 198
Query: 174 LKHPVYITEGSYTNIKVTTPDDLLIAERILN 204
           L     + +G   N+K+T P D  I   +L+
Sbjct: 199 LGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229

>pdb|1VPA|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Tm1393) From Thermotoga Maritima At 2.67 A Resolution Length = 234

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 14/203 (6%)
Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET--KEKINVDLKFSLP 58
           +PKQ+L + G+ +  Y   TF +   +  +V+V    + ++ E+    EK+   L     
Sbjct: 31  VPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKV---LGIVEG 87
Query: 59  GKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP-AKA 116
           G  R  SV S L+ ++ F+   V +HDSARP +  K V +VL  A   GAA L +  + A
Sbjct: 88  GDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDA 147
Query: 117 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 176
            ++  N     +  + RK ++ + TPQ    ++LKK  E     G E  DD   V+ L  
Sbjct: 148 LVRVENDR---IEYIPRKGVYRILTPQAFSYEILKKAHE----NGGEWADDTEPVQKLGV 200
Query: 177 PVYITEGSYTNIKVTTPDDLLIA 199
            + + EG     KVT  +DL +A
Sbjct: 201 KIALVEGDPLCFKVTFKEDLELA 223

>pdb|2XWN|A Chain A, Crystal Structure Of Ispd From Mycobacterium Tuberculosis In Complex With Ctp And Mg Length = 233

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 7/172 (4%)
Query: 39  SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSE--LVCIHDSARPLVLSKDVQ 96
           +D  +E ++ +         G  R D+V   L  +   +E   V +HD+AR L     V 
Sbjct: 60  ADRTDEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVA 119
Query: 97  KVLMDALRVG-AAVLGV-PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF 154
           +V ++ALR G AAV+ V P   TIK  ++   V+ T +R  L  +QTPQ    DLL + +
Sbjct: 120 RV-VEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSY 178
Query: 155 EL--VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204
           +   ++    E TDD S+VEH+   V + +G     K+TT  DLL+A+ I++
Sbjct: 179 QRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVH 230

>pdb|3OKR|A Chain A, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate Cytidyltransferase (Ispd) Length = 231

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 39  SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSE--LVCIHDSARPLVLSKDVQ 96
           +D  +E ++ +         G  R D+V   L  +   +E   V +HD+AR L     V 
Sbjct: 60  ADRTDEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVA 119
Query: 97  KVLMDALRVG-AAVLGV-PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF 154
           +V ++ALR G AAV+ V P   TIK  ++   V+ T +R  L  +QTPQ    DLL + +
Sbjct: 120 RV-VEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSY 178
Query: 155 EL--VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204
           +   ++    E TDD S+VEH+   V + +G     K+TT  DLL+A+ I+ 
Sbjct: 179 QRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR 230

>pdb|3Q7U|A Chain A, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate Cytidyltransferase (Ispd) Complexed With Ctp Length = 231

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 39  SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSE--LVCIHDSARPLVLSKDVQ 96
           +D  +E ++ +         G  R D+V   L  +   +E   V +HD+AR L     V 
Sbjct: 60  ADRTDEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVA 119
Query: 97  KVLMDALRVG-AAVLGV-PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF 154
           +V ++ALR G AAV+ V P   TIK  ++   V+ T +R  L  +QTPQ    DLL + +
Sbjct: 120 RV-VEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSY 178
Query: 155 EL--VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204
           +   ++    E TDD S+VEH+   V + +G     K+TT  DLL+A+ I+ 
Sbjct: 179 QRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR 230

>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase From Listeria Monocytogenes Length = 246

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 107/217 (49%), Gaps = 13/217 (5%)
Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--P 58
           MPKQ+LPL G+PI +++   F       +I++     + +  E+  +K   D +  +   
Sbjct: 22  MPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEG 81
Query: 59  GKERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP 113
           G++R +++ +G++ V+      + +++  HD+ RP +  + +++ +  AL  GA    + 
Sbjct: 82  GEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIE 141
Query: 114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSIVE 172
           A  TI E+++   +     R  +++ QTPQ      +   ++ +  E  ++ TD   I  
Sbjct: 142 ALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICL 201
Query: 173 HLKHPVYITEGSYTNIKVTTPDDL-----LIAERILN 204
                V + +G   NIK+TTP DL     +I ERI N
Sbjct: 202 LAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERIAN 238

>pdb|1W55|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter Jejuni Length = 371

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 3   KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC-DPSYSDIFEETKEKINVDLKFSLPGKE 61
           KQ+L L   P+ LY+    S     K+IVV   + +Y   F +  E       F   G  
Sbjct: 23  KQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTKNYE-------FIEGGDT 75
Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 121
           R +S+   L+ +D  SE V + D AR LV SK++   L++ L     +   PA   +K A
Sbjct: 76  RAESLKKALELID--SEFVMVSDVARVLV-SKNLFDRLIENLDKADCI--TPA---LKVA 127
Query: 122 NSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYIT 181
           ++  F    L R+ +  +QTPQ+ K  LLKK  +    + LE TDD + +  +   ++  
Sbjct: 128 DTTLFDNEALQREKIKLIQTPQISKTKLLKKALD----QNLEFTDDSTAIAAMGGKIWFV 183
Query: 182 EGSYTNIKVTTPDDL 196
           EG     K+T  +DL
Sbjct: 184 EGEENARKLTFKEDL 198

>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid Precursors In Streptococcus Pneumoniae Length = 236

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET--------KEKINVD 52
           +PKQ+L L  +PI +++   F     +++IVV     +    E+         KE+I + 
Sbjct: 21  LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIII- 79
Query: 53  LKFSLPGKERQDSVYSGLQEVDFN-----SELVCIHDSARPLVLSKDVQKVLMDALRVGA 107
              +  G +R  S+ + ++ +D        ++V  HDS RP +  + +Q  +  A    A
Sbjct: 80  ---TKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA 136
Query: 108 AVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIK-PDLLKKGFELVNREGLEVTD 166
               V A  TI E+ +  F+    +R  L++ QTPQ  +  D +     L + E   +TD
Sbjct: 137 VDTVVEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTD 196
Query: 167 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203
              I       V + +G Y+N+K+TT  DL IA+ ++
Sbjct: 197 ACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMI 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	9e-95
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	4e-85
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	5e-85
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	6e-85
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	8e-84
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	1e-83
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	7e-83
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	1e-79
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	1e-78
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	2e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score =  274 bits (704), Expect = 9e-95
 Identities = 169/207 (81%), Positives = 189/207 (91%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL F++PGK
Sbjct: 22  MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGK 81

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D   VGAAVLGVPAKATIKE
Sbjct: 82  ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE 141

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
            NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV  EGLEVTDDVSIVE+LKHPVY+
Sbjct: 142 VNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYV 201

Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSS 207
           ++GSYTNIKVTTPDDLL+AERIL+  S
Sbjct: 202 SQGSYTNIKVTTPDDLLLAERILSEDS 228

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246

 Score =  251 bits (643), Expect = 4e-85
 Identities = 52/212 (24%), Positives = 104/212 (49%), Gaps = 8/212 (3%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLP 58
           MPKQ+LPL G+PI +++   F       +I++     + +  E+  +K   D  +     
Sbjct: 22  MPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEG 81

Query: 59  GKERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP 113
           G++R +++ +G++ V+      + +++  HD+ RP +  + +++ +  AL  GA    + 
Sbjct: 82  GEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIE 141

Query: 114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE-VTDDVSIVE 172
           A  TI E+++   +     R  +++ QTPQ      +   ++ +  E  + +TD   I  
Sbjct: 142 ALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICL 201

Query: 173 HLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204
                V + +G   NIK+TTP DL +A  I+ 
Sbjct: 202 LAGDDVKLVKGEIFNIKITTPYDLKVANAIIQ 233

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236

 Score =  250 bits (641), Expect = 5e-85
 Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 13/206 (6%)

Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
           PK +L + G+ +  ++   F    +  E++V   P              +   F   G  
Sbjct: 43  PKAFLQVGGRTLLEWTLAAFR---DAAEVLVALPPGAEPPKG-------LGAVFLEGGAT 92

Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 121
           RQ SV   L+       LV +HD ARP V    V +VL  A R GAAV  +P   T+   
Sbjct: 93  RQASVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLMAP 150

Query: 122 NSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYIT 181
             E    R + R+    +QTPQ     LL++      R+GLE +DD  +V+ L +PV + 
Sbjct: 151 EGE-AYGRVVPREAFRLVQTPQGFFTALLREAHAYARRKGLEASDDAQLVQALGYPVALV 209

Query: 182 EGSYTNIKVTTPDDLLIAERILNLSS 207
           EG  T  K+T P DL++AE +  + S
Sbjct: 210 EGEATAFKITHPQDLVLAEALARVWS 235

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score =  250 bits (640), Expect = 6e-85
 Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 6/207 (2%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
            PKQYL +  Q I  +S +       VK +V+   P  S   +      +  +     G 
Sbjct: 25  CPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLAN-HPQITVVDGGD 83

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI 118
           ER DSV +GL+    +++ V +HD+ARP +   D+ ++L           +L  P + T+
Sbjct: 84  ERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLL-ALSETSRTGGILAAPVRDTM 141

Query: 119 KEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHP 177
           K A   ++ +  T+DR  LW   TPQ    +LL         EG  +TD+ S +E+    
Sbjct: 142 KRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFH 201

Query: 178 VYITEGSYTNIKVTTPDDLLIAERILN 204
             + EG   NIKVT P+DL +AE  L 
Sbjct: 202 PQLVEGRADNIKVTRPEDLALAEFYLT 228

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236

 Score =  247 bits (633), Expect = 8e-84
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 10/214 (4%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFS 56
           +PKQ+L L  +PI +++   F     +++IVV     +    E+  +K        +  +
Sbjct: 21  LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIIT 80

Query: 57  LPGKERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG 111
             G +R  S+ + ++ +D        ++V  HDS RP +  + +Q  +  A    A    
Sbjct: 81  KGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTV 140

Query: 112 VPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLE-VTDDVSI 170
           V A  TI E+ +  F+    +R  L++ QTPQ  +       +  ++ E  E +TD   I
Sbjct: 141 VEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKI 200

Query: 171 VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204
                  V + +G Y+N+K+TT  DL IA+ ++ 
Sbjct: 201 FVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score =  246 bits (631), Expect = 1e-83
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 8/206 (3%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
            PK ++ L G P+  ++         +  IV+   P+ +D  +      +        G 
Sbjct: 20  RPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGGEDS--VIVSGGV 77

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI 118
           +R +SV   L+    ++E V +HD+AR L     + +V+  AL+    A V G+    TI
Sbjct: 78  DRTESVALALEAAG-DAEFVLVHDAARALTPPALIARVV-AALKEGHSAVVPGLAPADTI 135

Query: 119 KEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPV 178
           K  ++   V+ T +R  L  +QTPQ    D+L++ +      G  VTDD S+VE L  PV
Sbjct: 136 KAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYARATAGG--VTDDASLVEQLGTPV 193

Query: 179 YITEGSYTNIKVTTPDDLLIAERILN 204
            I +G     K+TTP DL++AE +L 
Sbjct: 194 QIVDGDPLAFKITTPLDLVLAEAVLA 219

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score =  244 bits (626), Expect = 7e-83
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 10/209 (4%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           +PK +  L GQ +   +         V  +VV      +D     ++ +         G 
Sbjct: 25  VPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEA---RQILGHRAMIVAGGS 81

Query: 61  ERQDSVYSGLQEVD--FNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKA 116
            R D+V   L  +      E V +HD+AR L     V +V+ +ALR    A V  +P   
Sbjct: 82  NRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVV-EALRDGYAAVVPVLPLSD 140

Query: 117 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFE--LVNREGLEVTDDVSIVEHL 174
           TIK  ++   V+ T +R  L  +QTPQ    DLL + ++   ++    E TDD S+VEH+
Sbjct: 141 TIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHI 200

Query: 175 KHPVYITEGSYTNIKVTTPDDLLIAERIL 203
              V + +G     K+TT  DLL+A+ I+
Sbjct: 201 GGQVQVVDGDPLAFKITTKLDLLLAQAIV 229

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score =  236 bits (605), Expect = 1e-79
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 8/205 (3%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           +PKQ+L + G+ +  Y   TF +   +  +V+V    + ++ E+      V L     G 
Sbjct: 31  VPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKV-LGIVEGGD 89

Query: 61  ERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK 119
            R  SV S L+ +  F+   V +HDSARP +  K V +VL  A   GAA L +     + 
Sbjct: 90  TRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALV 149

Query: 120 EANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVY 179
              ++   +  + RK ++ + TPQ    ++LKK  E     G E  DD   V+ L   + 
Sbjct: 150 RVEND--RIEYIPRKGVYRILTPQAFSYEILKKAHE----NGGEWADDTEPVQKLGVKIA 203

Query: 180 ITEGSYTNIKVTTPDDLLIAERILN 204
           + EG     KVT  +DL +A  I  
Sbjct: 204 LVEGDPLCFKVTFKEDLELARIIAR 228

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score =  234 bits (599), Expect = 1e-78
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 10/210 (4%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
            PKQY+ +  + +  +    F R   V   VVV  P  +   ++ +        +   G+
Sbjct: 24  KPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTF-ADKVQTAFPQVRVWKNGGQ 82

Query: 61  ERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPA 114
            R ++V +G+ ++        ++ + +HD+AR  + S+ + +++  A       +L VP 
Sbjct: 83  TRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPV 142

Query: 115 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHL 174
             T+K A S   +  T+DR  LW+ QTPQ+ +  LL +     N  G  +TD+ S VE L
Sbjct: 143 ADTLKRAES-GQISATVDRSGLWQAQTPQLFQAGLLHRALAAENLGG--ITDEASAVEKL 199

Query: 175 KHPVYITEGSYTNIKVTTPDDLLIAERILN 204
                + +G   N+K+T P D  I   +L+
Sbjct: 200 GVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371

 Score =  161 bits (409), Expect = 2e-48
 Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 18/202 (8%)

Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
            KQ+L L   P+ LY+    S     K+IVV              +K   + +F   G  
Sbjct: 22  KKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN------ITYMKKFTKNYEFIEGGDT 75

Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 121
           R +S+   L+ +D  SE V + D AR LV      +++ +  +       +    T    
Sbjct: 76  RAESLKKALELID--SEFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTL-- 131

Query: 122 NSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYIT 181
               F    L R+ +  +QTPQ+ K  LLKK  +    + LE TDD + +  +   ++  
Sbjct: 132 ----FDNEALQREKIKLIQTPQISKTKLLKKALD----QNLEFTDDSTAIAAMGGKIWFV 183

Query: 182 EGSYTNIKVTTPDDLLIAERIL 203
           EG     K+T  +DL   +   
Sbjct: 184 EGEENARKLTFKEDLKKLDLPT 205

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 56/218 (25%)

Query: 26  EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 85
           E  E        Y DI    ++    +       K+ QD   S L + + +  ++     
Sbjct: 10  ETGEH----QYQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 86  ARPLVL--------SKDVQKVLMDALRVGAAVLGVPAKATIKE--ANSESFVVRTLDRKT 135
           +  L L         + VQK + + LR+    L  P K   ++    +  + +   DR  
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDR-- 118

Query: 136 LWEMQTPQVIKPD---------LLKKG-FELVNREGL---------------EVTDDVSI 170
           L+     QV              L++   EL   + +               +V     +
Sbjct: 119 LY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 171 VEHLKHPVY-ITEGSYTNIKVTTPDDLLIAERILNLSS 207
              +   ++ +           +P+ +L  E +  L  
Sbjct: 177 QCKMDFKIFWLNLK-----NCNSPETVL--EMLQKLLY 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	100.0
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	100.0
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	100.0
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.97
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.97
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.96
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.96
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.96
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.95
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.93
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.91
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.9
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.9
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.9
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.88
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.88
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.87
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.87
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.85
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.85
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.84
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.83
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.83
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.83
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.82
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.79
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.79
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.78
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.76
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	99.76
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.72
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.7
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.7
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.7
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.7
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.68
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.66
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.66
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.64
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.64
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.63
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.62
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.61
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.6
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.58
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.53
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.52
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.44
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.43
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.3
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	99.26
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	98.99
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	97.57
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	96.66
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	95.75
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	94.89
3bcv_A	240	Putative glycosyltransferase protein; protein stru	94.68
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	94.55
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	94.4
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	93.69
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	93.48
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	91.98
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	91.53
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	89.93
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	88.01
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	87.83
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	86.97
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	86.78
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	85.22
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	83.6

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=100.00  E-value=1.8e-39  Score=255.66  Aligned_cols=201  Identities=29%  Similarity=0.350  Sum_probs=177.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCC--CC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN--SE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~--~d   78 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+||+++++++.+++.+..   .+.++.|+.++.+|+.+||++++..  .+
T Consensus        25 ~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---~v~~v~gg~~r~~sv~~gl~~~~~~~~~d  101 (231)
T 3q80_A           25 VPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---RAMIVAGGSNRTDTVNLALTVLSGTAEPE  101 (231)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG---GCEEEECCSSHHHHHHHHHGGGC---CCS
T ss_pred             CCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC---CeEEEcCCCchHHHHHHHHHHhhhcCCCC
Confidence            489999999999999999999988779999999999875556665543   4567778888999999999998643  58


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV  157 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~  157 (210)
                      +|++|+||+||+++++|+++++.+.+ .+++++++|+.+++++.+++|.+.++++|+.+|.+||||+|+.+.|..++...
T Consensus       102 ~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~~~~~~~g~v~~~~~r~~l~~~qTPq~F~~~~L~~a~~~~  181 (231)
T 3q80_A          102 FVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRG  181 (231)
T ss_dssp             EEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEECSCEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCEEEEcCCCcEEEecchhheEEEcCCcEEEHHHHHHHHHHH
Confidence            99999999999999999999999987 78899999999999887777889999999999999999999999999999876


Q ss_pred             Hh--cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320          158 NR--EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       158 ~~--~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      ..  .++++||+.++++..|.++..++++..+++||||+||..|+++++
T Consensus       182 ~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l~  230 (231)
T 3q80_A          182 SLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR  230 (231)
T ss_dssp             TC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred             HhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHhc
Confidence            54  257899999999999999999999999999999999999999985

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=100.00  E-value=7.1e-36  Score=237.42  Aligned_cols=209  Identities=24%  Similarity=0.367  Sum_probs=182.0

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC--CcEEEecCCccHHHHHHHHHHcccC---
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLPGKERQDSVYSGLQEVDF---   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~--~~v~~~~~~~~~~~si~~~l~~~~~---   75 (210)
                      +||+|++++|+|||+|+++++.+++.+++|+||++++..+.+.+.++.++  ..+.++.++.++.+|+..|++.+..   
T Consensus        22 ~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~l~~~~~  101 (246)
T 3f1c_A           22 MPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYG  101 (246)
T ss_dssp             CCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEECCSSHHHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHHHHhhhhc
Confidence            48999999999999999999999877999999999887555677777664  2466777888899999999999863   


Q ss_pred             --CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHH
Q 028320           76 --NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG  153 (210)
Q Consensus        76 --~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~  153 (210)
                        +.++|++++||+||+++++|+++++.+...+++++++|+.+++++.+++|.+..+.+|+.++..|+|++|+.+.|..+
T Consensus       102 ~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~i~~~~~~~~v~~~~~r~~l~~~qtpq~f~~~~L~~a  181 (246)
T 3f1c_A          102 LTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMKKVFNH  181 (246)
T ss_dssp             CCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCEEECSSSSBCCBCCCGGGEEEEEEEEEEEHHHHHHH
T ss_pred             CCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccceEEEecCCCeEEEecChHHhhhhcCCceeEHHHHHHH
Confidence              368999999999999999999999999888888999999998887665677778889999999999999999999998


Q ss_pred             HHHH-HhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccCC
Q 028320          154 FELV-NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES  209 (210)
Q Consensus       154 ~~~~-~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~~  209 (210)
                      +... ...++++||...+++..|.++..++++..+++||||+||..|+.++++++.+
T Consensus       182 ~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~~~  238 (246)
T 3f1c_A          182 YQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERIAN  238 (246)
T ss_dssp             HHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccccc
Confidence            8765 2234679999999999999999999999999999999999999999988754

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=100.00  E-value=1.9e-31  Score=209.15  Aligned_cols=206  Identities=82%  Similarity=1.229  Sum_probs=165.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+|+++++.......+...++.++.++.++.++.+|+..|++.++.+.+.|
T Consensus        22 ~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~sv~~al~~~~~~~~~v  101 (228)
T 2yc3_A           22 MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVNSELV  101 (228)
T ss_dssp             -CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECCCSSHHHHHHHHHTTSCTTCSEE
T ss_pred             CCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHhhccCCCEE
Confidence            38999999999999999999998866899999999875322222333444456667766788999999999986446899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      +++++|+||+++++++++++.+...++++++.+..+.++.++.+|++.++++++.++..++|+.|+.+.|..++......
T Consensus       102 l~~d~d~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  181 (228)
T 2yc3_A          102 CIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSE  181 (228)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBCCCCSCCCCEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred             EEecCCCccCCHHHHHHHHHHHHhcCceEEEEeccceEEEEcCCCceEEecCccceEEEeCCcEEEHHHHHHHHHHHHhc
Confidence            99999999999999999999887766667677777665554445666666788888888999999998888877655445


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      ++|+++...++...|.++..++++..++|||||+||+.++.+++.+
T Consensus       182 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~  227 (228)
T 2yc3_A          182 GLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSED  227 (228)
T ss_dssp             TCCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC-
T ss_pred             CCCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhhc
Confidence            6788988888888898888888877899999999999999998765

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.97  E-value=1.9e-30  Score=204.17  Aligned_cols=200  Identities=29%  Similarity=0.397  Sum_probs=161.8

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~   79 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+||++++....+.+.+. ++.++.+..||+++.+|+.+|++.++. +.++
T Consensus        31 ~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~~~~~gg~~~~~sv~~al~~~~~~~~~~  109 (234)
T 1vpa_A           31 VPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-HEKVLGIVEGGDTRSQSVRSALEFLEKFSPSY  109 (234)
T ss_dssp             SCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-CTTEEEEEECCSSHHHHHHHHHHHHGGGCCSE
T ss_pred             CCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-cCCceEEeCCCCcHHHHHHHHHHHhhhcCCCE
Confidence            38999999999999999999999877899999999876333343333 333456777888899999999998853 3689


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      +++++||+||+++++++++++.+...+++++++++.++++..+.+| + .+++|+.++..++|++|+++.+..++..   
T Consensus       110 vlv~~~D~Pli~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~g-v-~~~~r~~~~~~~~p~~f~~~~l~~~~~~---  184 (234)
T 1vpa_A          110 VLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR-I-EYIPRKGVYRILTPQAFSYEILKKAHEN---  184 (234)
T ss_dssp             EEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEETTE-E-EEECCTTEEEEEEEEEEEHHHHHHHHTT---
T ss_pred             EEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEecCCcEEEECCCC-c-ccCChhHeeeecCCccccHHHHHHHHHh---
Confidence            9999999999999999999998876666666778777766555567 7 7788999999999999998887766543   


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                       +++.++...+++..|.++..+..+..++|||||+||+.++.+++.+.
T Consensus       185 -~~~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~  231 (234)
T 1vpa_A          185 -GGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWE  231 (234)
T ss_dssp             -CCCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHHC
T ss_pred             -cCCCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhccc
Confidence             24567777788778888888877667899999999999999998765

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.97  E-value=3.6e-29  Score=197.25  Aligned_cols=205  Identities=31%  Similarity=0.451  Sum_probs=163.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC-cEEEecCCccHHHHHHHHHHcccCCCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~-~v~~~~~~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+||++++. +.+.+ +..++. .+.++.++.++.+|+..|+..++ +.+.
T Consensus        25 ~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~v~~~~~~~g~~~~i~~al~~~~-~~~~  101 (236)
T 1i52_A           25 CPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD-SRFAQ-LPLANHPQITVVDGGDERADSVLAGLKAAG-DAQW  101 (236)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTC-CSGGG-SGGGGCTTEEEEECCSSHHHHHHHHHHTST-TCSE
T ss_pred             CCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccH-HHHHH-HHhcCCCCEEEECCCCCHHHHHHHHHHhcC-CCCE
Confidence            38999999999999999999998877899999999764 22333 444443 45566565678899999999884 3588


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcC-CeEEeeecccceEEccCC-CceeeecCccCeeeecCCcccChHHHHHHHHHH
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSE-SFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV  157 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~-g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~  157 (210)
                      +++++||+||++++.++++++.+...+ .+++++|..++++..+++ |.+...++++.+|..++|++|+++.+...+...
T Consensus       102 ~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~p~~f~~~~l~~~~~~~  181 (236)
T 1i52_A          102 VLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRA  181 (236)
T ss_dssp             EEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHhcCCeEEEEEeccccEEEEcCCCCceeeccChHhheeeeCCceecHHHHHHHHHHH
Confidence            999999999999999999999876655 455567777765544434 567667788899999999999998888888776


Q ss_pred             HhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320          158 NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       158 ~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                      ..+|.++++...+++..|.++..+..+..++|||||+||+.++.+++.++.
T Consensus       182 ~~~g~~~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~~~  232 (236)
T 1i52_A          182 LNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIH  232 (236)
T ss_dssp             HHTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC---
T ss_pred             HhcCCCcccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHhhh
Confidence            666767888888888888888888777788999999999999999987653

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.96  E-value=1e-28  Score=194.26  Aligned_cols=204  Identities=26%  Similarity=0.360  Sum_probs=162.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC--C--cEEEecCCccHHHHHHHHHHccc--
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--V--DLKFSLPGKERQDSVYSGLQEVD--   74 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~--~--~v~~~~~~~~~~~si~~~l~~~~--   74 (210)
                      +||+|++++|+|||+|+++++.+++.+++|+|+++++..+.+.+.+++++  .  ...+..++.++.+|+.+|+..+.  
T Consensus        21 ~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  100 (236)
T 2vsh_A           21 LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAY  100 (236)
T ss_dssp             -CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             CCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEECCCCchHHHHHHHHHHHHhh
Confidence            48999999999999999999999866899999999876345666666666  2  34566677778999999999884  


Q ss_pred             -C--CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCC-ceeeecCccCeeeecCCcccChHHH
Q 028320           75 -F--NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSES-FVVRTLDRKTLWEMQTPQVIKPDLL  150 (210)
Q Consensus        75 -~--~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~v~~~~~r~~~~~~~~P~~f~~~~l  150 (210)
                       .  +.+++++++||+||+++++++++++.+.+.++++.+.|+.++++.. ++| .+..+.++..++..++|++|+.+.+
T Consensus       101 ~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~p~~f~~~~l  179 (236)
T 2vsh_A          101 RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDTIVES-TNGQFITDIPNRAHLYQGQTPQTFRCKDF  179 (236)
T ss_dssp             SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSEEEEEEECCSCEEEC-SSSSBCCBCCCGGGEEEEEEEEEEEHHHH
T ss_pred             ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCcEEEEEeccccEEEe-CCCCeeeeecChHHheeecCCcEecHHHH
Confidence             2  3589999999999999999999999887766556677888776653 467 7777778887877788999998888


Q ss_pred             HHHHHHHHhcCCC-CCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          151 KKGFELVNREGLE-VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       151 ~~~~~~~~~~~~~-~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      ..++......+++ +++...++...|.++..+..+..++|||||+||..++.+++.
T Consensus       180 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~~  235 (236)
T 2vsh_A          180 MDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIEK  235 (236)
T ss_dssp             HHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhhc
Confidence            7777644333444 677666777788888888877789999999999999998864

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.96  E-value=5.7e-28  Score=188.50  Aligned_cols=201  Identities=30%  Similarity=0.412  Sum_probs=160.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+|+++++..+.+.+.+.  +..+.++.++.++.+++..|++.++ +.+.+
T Consensus        20 ~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~i~~al~~~~-~~~~v   96 (223)
T 2xwl_A           20 RPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG--GEDSVIVSGGVDRTESVALALEAAG-DAEFV   96 (223)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC--BTTEEEEECCSSHHHHHHHHHTTCT-TCSEE
T ss_pred             CCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc--cCCeEEEcCCCCHHHHHHHHHHhcC-CCCEE
Confidence            48999999999999999999998876899999999875333444332  2345566665667899999999883 36889


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHH-HhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           81 CIHDSARPLVLSKDVQKVLMDA-LRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      ++++||+||+++++++++++.+ .+.++++++.++.++.++.+++|.+..+++++.++..++|++|+...+...+.... 
T Consensus        97 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~i~~~~~~d~~~~~~~~g~~~~~~e~~~l~~~~~p~~f~~~~l~~~~~~~~-  175 (223)
T 2xwl_A           97 LVHDAARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYARAT-  175 (223)
T ss_dssp             EECCTTCTTCCHHHHHHHHHHHHHTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEECSCEEEEHHHHHHHHTTCC-
T ss_pred             EEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEEecccceEEEcCCCcEEeecChHHheeeeCCcccCHHHHHHHHHHhh-
Confidence            9999999999999999999988 55566676778877776666567777778888888788999999877766654321 


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                       ++++++...++...|.++..+..+..++|||||+||..++.+++.+
T Consensus       176 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~  221 (223)
T 2xwl_A          176 -AGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAHH  221 (223)
T ss_dssp             -SCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHHT
T ss_pred             -CCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhhc
Confidence             4567888888877788888887776789999999999999998764

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.96  E-value=9.2e-28  Score=188.39  Aligned_cols=199  Identities=27%  Similarity=0.417  Sum_probs=156.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC-cEEEecCCccHHHHHHHHHHcccC----
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDF----   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~-~v~~~~~~~~~~~si~~~l~~~~~----   75 (210)
                      .||+|++++|+|||+|+++++.+++.+++|+||++++. +.+.+ +.+++. .+.++.++.++.+|+..|+..+..    
T Consensus        24 ~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~si~~~l~~~~~~~~~  101 (231)
T 1vgw_A           24 KPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADK-VQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLA  101 (231)
T ss_dssp             -CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHH-HHHHCTTSEEECCCCSSHHHHHHHHHHHHHHHSSS
T ss_pred             CCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccH-HHHHH-HHhcCCCceEEEcCCCcHHHHHHHHHHHHhhhccC
Confidence            38999999999999999999998877899999998765 34555 444442 455666667789999999988742    


Q ss_pred             -CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC-CeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHH
Q 028320           76 -NSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG  153 (210)
Q Consensus        76 -~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~  153 (210)
                       ..+.+++++||+||+++++++++++.+...+ +++++++..++.+.. ++|.+....+++.++..++|++|+++.+..+
T Consensus       102 ~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~~~~~~~p~~f~~~~l~~~  180 (231)
T 1vgw_A          102 AETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRA-ESGQISATVDRSGLWQAQTPQLFQAGLLHRA  180 (231)
T ss_dssp             CTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEE-SSSBEEEEECCTTEEEEEEEEEEEHHHHHHH
T ss_pred             CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEeecccceEEe-CCCceEecCChHHheeeeCCcEecHHHHHHH
Confidence             3689999999999999999999999886654 456677877765543 3566766778888888889999999888777


Q ss_pred             HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320          154 FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       154 ~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      +.....++  +++...++...|.++..+..+..++|||||+||+.++.+++
T Consensus       181 ~~~~~~~g--~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~  229 (231)
T 1vgw_A          181 LAAENLGG--ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD  229 (231)
T ss_dssp             HHC----C--CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred             HHHHhhcC--CCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHHh
Confidence            76443334  57777777777888888887778999999999999999875

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.95  E-value=7.3e-27  Score=184.33  Aligned_cols=194  Identities=32%  Similarity=0.450  Sum_probs=155.1

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl   81 (210)
                      ||+|++++|+|||+|++++   +..+++|+||+++ .+.   + ++..+  +.++.++.++..++..|++.++  .+.++
T Consensus        43 ~K~l~~i~gkpli~~~l~~---~~~~~~ivvv~~~-~~~---~-~~~~~--v~~~~~~~~~~~~i~~al~~~~--~~~vl  110 (236)
T 2px7_A           43 PKAFLQVGGRTLLEWTLAA---FRDAAEVLVALPP-GAE---P-PKGLG--AVFLEGGATRQASVARLLEAAS--LPLVL  110 (236)
T ss_dssp             CGGGCBCSSSBHHHHHHHH---TTTCSEEEEEECT-TCC---C-CTTCS--CEEEECCSSHHHHHHHHHHHCC--SSEEE
T ss_pred             CCeEEEECCEEHHHHHHHh---cCCCCeEEEEeCH-HHH---H-hhcCC--cEEEeCCCchHHHHHHHHHHcC--CCeEE
Confidence            8999999999999999999   3458999999997 321   2 22223  4556665668899999999885  68899


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhcC
Q 028320           82 IHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREG  161 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~~  161 (210)
                      +++||+||++++.++++++.+...++++++.|..++.+..+ +|.+..+++++.++..++|++|+++.+...+......+
T Consensus       111 v~~~D~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~g  189 (236)
T 2px7_A          111 VHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLMAPE-GEAYGRVVPREAFRLVQTPQGFFTALLREAHAYARRKG  189 (236)
T ss_dssp             ECCTTCCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEC-SSSCEEEECGGGCEEECSCEEEEHHHHHHHHHHHHHHT
T ss_pred             EecCccccCCHHHHHHHHHHHHhcCCeEEEEecCCcEEEec-CCeEEecCChHhhccccCCeEEcHHHHHHHHHHHHhcC
Confidence            99999999999999999998876666666778777665544 67777777888888888999999988877777665556


Q ss_pred             CCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320          162 LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       162 ~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                      +++++...+++..|.++..+..+..++|||||+||+.++.+++.+.+
T Consensus       190 ~~~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~~  236 (236)
T 2px7_A          190 LEASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWSA  236 (236)
T ss_dssp             CCCSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC---
T ss_pred             CCchhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHhccC
Confidence            77888888888788888887776688999999999999999987653

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.93  E-value=6.7e-26  Score=189.14  Aligned_cols=185  Identities=25%  Similarity=0.342  Sum_probs=148.8

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.++..+++|+||++ +. +.+.+.+++    +.++.++.++.+|+.+|++.++  .+.+
T Consensus        21 ~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~-~~i~~~~~~----v~~v~~g~g~~~sv~~aL~~l~--~d~v   92 (371)
T 1w55_A           21 VKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NI-TYMKKFTKN----YEFIEGGDTRAESLKKALELID--SEFV   92 (371)
T ss_dssp             SCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CH-HHHHTTCSS----SEEEECCSSHHHHHHHHHTTCC--SSEE
T ss_pred             CCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CH-HHHHHHhCC----CEEEeCCCChHHHHHHHHHhcC--CCeE
Confidence            48999999999999999999998767899999998 42 334433322    4556777888999999999885  6899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      ++++||+||+++++++++++.+.+.+++++++|+.+++++.      ....+|+.++..++|+.|+++.+..++...   
T Consensus        93 lv~~~D~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~vk~v------~~t~~r~~l~~~~~P~~f~~~~l~~~~~~~---  163 (371)
T 1w55_A           93 MVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFD------NEALQREKIKLIQTPQISKTKLLKKALDQN---  163 (371)
T ss_dssp             EEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEET------TEEECGGGCCEECSCEEEEHHHHHHHTSSC---
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHhcCCEEEEEEeecCeeee------eeecCccceeecCCcceecHHHHHHHHHhc---
Confidence            99999999999999999999887767677778877765542      134577788888899999988877665421   


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      ++ +++...++++.|.++..++++..++|||||+||+.++ +++
T Consensus       164 ~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae-ll~  205 (371)
T 1w55_A          164 LE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD-LPT  205 (371)
T ss_dssp             CC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC-CCC
T ss_pred             cc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH-HhC
Confidence            23 6788888888888998888777899999999999998 774

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.91  E-value=1.1e-23  Score=167.55  Aligned_cols=201  Identities=15%  Similarity=0.120  Sum_probs=138.0

Q ss_pred             CccceecCCeehHHHHH-HHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccC-CCC
Q 028320            2 PKQYLPLLGQPIALYSF-YTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDF-NSE   78 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i-~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~-~~d   78 (210)
                      +|+|++++|||||.|++ +++.+++ +++|+|+|+++   .+.+.++++|..+.+..+ .....+++.+|++.+.. +.|
T Consensus        17 ~K~L~~i~GkPli~~~i~~~~~~~~-~~~vvVvt~~~---~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~~~~~~~d   92 (253)
T 4fcu_A           17 GKPLLLIHDRPMILRVVDQAKKVEG-FDDLCVATDDE---RIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADD   92 (253)
T ss_dssp             TGGGSEETTEEHHHHHHHHHHTCTT-CCEEEEEESCH---HHHHHHHTTTCCEEECCTTCCCHHHHHHHHHHHHTCCTTC
T ss_pred             CCceeeECCeEhHHHHHHHHHHhcC-CCEEEEECCHH---HHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHhcCcCCCC
Confidence            59999999999999999 9999886 99999999863   467778888877765432 22334578888888752 468


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhc-CC--eEEeeecc------cc--eEE-ccCCCceeee----c--CccC-----
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRV-GA--AVLGVPAK------AT--IKE-ANSESFVVRT----L--DRKT-----  135 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~-~~--~~~~~~~~------~~--~~~-~~~~g~v~~~----~--~r~~-----  135 (210)
                      .|++++||+||+++++|+++++.+.+. ++  +..++++.      +|  ++. .+++|.+..+    +  +|+.     
T Consensus        93 ~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ip~~r~~~~~~~  172 (253)
T 4fcu_A           93 IIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDE  172 (253)
T ss_dssp             EEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSCCSCCTTTSSSSS
T ss_pred             EEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCCCCCCCCcccccc
Confidence            999999999999999999999998765 22  44455542      22  222 2456665421    2  2221     


Q ss_pred             ------eeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCC-CccccChhhHHHHHHHhhcc
Q 028320          136 ------LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       136 ------~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~~-~~dIdt~~Dl~~a~~~~~~~  206 (210)
                            .+..-.-++|+...|..... .....++.++..+.++  ++|.++.++..+.. +++||||+||+.+++++++|
T Consensus       173 ~~~~~~~~~~~GiY~f~~~~l~~~~~-~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r  251 (253)
T 4fcu_A          173 PTLHTQAFRHLGLYAYRVSLLQEYVT-WEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES  251 (253)
T ss_dssp             CCCCSCCEEEEEEEEEEHHHHHHHTT-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred             cccccceeEEEEEEEeCHHHHHHHHh-CCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence                  12222346778777665331 1111123333334343  57999998777666 89999999999999999876


Q ss_pred             c
Q 028320          207 S  207 (210)
Q Consensus       207 ~  207 (210)
                      .
T Consensus       252 ~  252 (253)
T 4fcu_A          252 F  252 (253)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.90  E-value=3.7e-23  Score=163.50  Aligned_cols=200  Identities=15%  Similarity=0.151  Sum_probs=139.5

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||+|++++|+|||+|+++++.+++.+++|+|+++++   .+.+.++++++.+.... .......++..++..+.  .+.+
T Consensus        18 ~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~   92 (245)
T 1h7e_A           18 GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDP---RVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVE--ADIY   92 (245)
T ss_dssp             TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCH---HHHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHSC--CSEE
T ss_pred             CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcH---HHHHHHHHcCCeEEeCCCccCCcHHHHHHHHHhCC--CCEE
Confidence            899999999999999999999997569999999873   45677777776553332 22334577778888773  6899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhc-C--CeEEeeecc-------cceEEc-cCCCceeee-----c-Ccc----Ceeee
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAK-------ATIKEA-NSESFVVRT-----L-DRK----TLWEM  139 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~-~--~~~~~~~~~-------~~~~~~-~~~g~v~~~-----~-~r~----~~~~~  139 (210)
                      ++++||+||+++++++++++.+... +  .++++.++.       ..++.+ +++|.+..+     . +|+    ..+..
T Consensus        93 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~  172 (245)
T 1h7e_A           93 INLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKH  172 (245)
T ss_dssp             EECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTGGGCCEEEE
T ss_pred             EEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCcccccCceeEE
Confidence            9999999999999999999988665 4  345555651       112222 345654322     1 232    14556


Q ss_pred             cCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320          140 QTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       140 ~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      .+++.|+...+...+ .....+++++|....++  ..|.++..+..+..++|||||+||+.++.+++.++
T Consensus       173 ~g~y~~~~~~l~~~~-~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~~  241 (245)
T 1h7e_A          173 VGIYAYRRDVLQNYS-QLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL  241 (245)
T ss_dssp             EEEEEEEHHHHHHGG-GSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCHHHHHHHH-hCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Confidence            788999987765544 11111122333333333  46889988888788999999999999999987654

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.90  E-value=5.8e-23  Score=164.38  Aligned_cols=198  Identities=13%  Similarity=0.207  Sum_probs=133.1

Q ss_pred             C-ccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHccc-CCCC
Q 028320            2 P-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVD-FNSE   78 (210)
Q Consensus         2 ~-K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~-~~~d   78 (210)
                      | |+|++++|||||.|+++++.+++ +++|+|+|++   +.+.+.++++|..+.+... .....+.+..+++.+. .+.|
T Consensus        33 p~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~~~~~l~~~~~d  108 (264)
T 3k8d_A           33 PGKPLVDINGKPMIVHVLERARESG-AERIIVATDH---EDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDT  108 (264)
T ss_dssp             TTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHHTCCTTC
T ss_pred             CCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECCH---HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHhccCCCC
Confidence            5 99999999999999999999987 8999999964   3467778888877655322 1111233556666653 2468


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--------eEEc-cCCCceee----ec--Ccc-------
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--------IKEA-NSESFVVR----TL--DRK-------  134 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~--------~~~~-~~~g~v~~----~~--~r~-------  134 (210)
                      .|++++||+||+++++|+++++.+...++  ++.+.|+.++        ++.+ +++|++..    .+  +|+       
T Consensus       109 ~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~~~  188 (264)
T 3k8d_A          109 VIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLE  188 (264)
T ss_dssp             EEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHCSS
T ss_pred             EEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCcccccccc
Confidence            99999999999999999999999876554  6777777642        2322 55676653    22  232       


Q ss_pred             ----CeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEE-ecCCCCccccChhhHHHHHHHhh
Q 028320          135 ----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYIT-EGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       135 ----~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~v~~v-~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                          ..+..-.-++|+...|..... .....++.++..+.+  .+.|.++.++ ..+..+++||||+||+.|+++++
T Consensus       189 ~~~~~~~~~~GiY~y~~~~l~~~~~-~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l~  264 (264)
T 3k8d_A          189 TVGDNFLRHLGIYGYRAGFIRRYVN-WQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR  264 (264)
T ss_dssp             CCCSCCEEECSEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC-
T ss_pred             ccCCcceEEEEEEEECHHHHHHHHh-CCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHhC
Confidence                122222346777777665433 111111111211222  2578899886 55667899999999999999874

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.90  E-value=1.7e-24  Score=169.67  Aligned_cols=192  Identities=17%  Similarity=0.183  Sum_probs=128.3

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE-----ecCCccHHHHHHHHHHcccCC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-----SLPGKERQDSVYSGLQEVDFN   76 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-----~~~~~~~~~si~~~l~~~~~~   76 (210)
                      ||+|++++|+|||+|+++++.+++.+++|+|+++++   .+.+.+++++..+..     ..++.++.+|+.+|++.+..+
T Consensus        20 ~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~   96 (228)
T 1ezi_A           20 LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGG---LIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSN   96 (228)
T ss_dssp             TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCH---HHHHHHHHTTCEEEECCC------CHHHHHHHHHHHHHTCC
T ss_pred             CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCH---HHHHHHHHcCCEEEeCchHHcCCCCChHHHHHHHHHHhCCC
Confidence            799999999999999999999987789999999764   345666677765421     224566789999999988534


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc-ceEEc--cCCCceeeecCccCeeeecCCcccChHHHH
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-TIKEA--NSESFVVRTLDRKTLWEMQTPQVIKPDLLK  151 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~-~~~~~--~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~  151 (210)
                      .|.+++++||+||+++++++++++.+...  ++++++.+..+ +.+..  +++|.+..+.+++.++       ++.+.+.
T Consensus        97 ~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~  169 (228)
T 1ezi_A           97 SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLE-------QPRQQLP  169 (228)
T ss_dssp             SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECC--CEEESSCHHHHT-------CCGGGSC
T ss_pred             CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCcceeeEEcCCCcEeecccccccc-------CCcccCc
Confidence            68899999999999999999999877554  45677777766 33321  3456555554433211       1111100


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHh---CCCCeEEE-ecCCCCccccChhhHHHHHHHhhc
Q 028320          152 KGFELVNREGLEVTDDVSIVEH---LKHPVYIT-EGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       152 ~~~~~~~~~~~~~~d~~~~~~~---~g~~v~~v-~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      ..+..  ..|.|+++...+.+.   .|.++..+ .++..++|||||+||+.++.+++.
T Consensus       170 ~~~~~--~~giy~~~~~~l~~~~~~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~  225 (228)
T 1ezi_A          170 QAFRP--NGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQAENILNH  225 (228)
T ss_dssp             CEEEE--EEEEEEEEHHHHHHHTSSCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred             hhhee--eeEEEEEeHHHHhhCCcccCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence            00000  012445555555444   57676544 444579999999999999999875

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.88  E-value=6.7e-22  Score=157.56  Aligned_cols=197  Identities=12%  Similarity=0.152  Sum_probs=133.5

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHccc-CCCCE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVD-FNSEL   79 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~-~~~d~   79 (210)
                      ||+|++++|||||.|+++++.+++ +++|+|+|++   +.+.+.++++|..+.+... .....+.+..|++.+. .+.|.
T Consensus        25 ~K~L~~i~GkPli~~~l~~l~~~~-i~~VvVvt~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~l~~~~~d~  100 (256)
T 3tqd_A           25 GKALVDIAGKPMIQHVYESAIKSG-AEEVVIATDD---KRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEI  100 (256)
T ss_dssp             TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTCE
T ss_pred             CCCeeeECCchHHHHHHHHHHhCC-CCEEEEECCH---HHHHHHHHHcCCeEEEeCCCCCCcHHHHHHHHHHhCcCCCCE
Confidence            699999999999999999999986 8999999975   3567778888877766432 2222445788888874 24689


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEeeecccc--------eE-EccCCCceeee----c--Ccc-------
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRV---GAAVLGVPAKAT--------IK-EANSESFVVRT----L--DRK-------  134 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~---~~~~~~~~~~~~--------~~-~~~~~g~v~~~----~--~r~-------  134 (210)
                      |++++||+||++++.++++++.+.+.   +.++.+.|+.++        ++ ..+++|++..+    +  +|+       
T Consensus       101 vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~pip~~r~~~~~~~~  180 (256)
T 3tqd_A          101 IVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKEN  180 (256)
T ss_dssp             EEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCTTTTTCGGG
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecCCCCCCCcccccccc
Confidence            99999999999999999999998753   345667776432        12 23556765422    2  232       


Q ss_pred             -----CeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEecCC-CCccccChhhHHHHHHHh
Q 028320          135 -----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITEGSY-TNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       135 -----~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~  203 (210)
                           ..+..-.-++|+...|..... .....++.++..+.+  ..+|.++.++..+. .+++||||+||+.+++++
T Consensus       181 ~~~~~~~~~~~GiY~y~~~~l~~~~~-l~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~~  256 (256)
T 3tqd_A          181 LQLNGSHYRHVGIYAYRVGFLEEYLS-WDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF  256 (256)
T ss_dssp             CCCSSCCEEEEEEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTTC
T ss_pred             cccCCcceEEEEEEEcCHHHHHHHHh-CCCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHhC
Confidence                 122333346788776655332 111001111111222  35899999877764 579999999999998764

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.88  E-value=1.9e-21  Score=154.77  Aligned_cols=201  Identities=12%  Similarity=0.177  Sum_probs=134.9

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC-ccHHHHHHHHHHccc-CCCCE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVD-FNSEL   79 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~-~~~~~si~~~l~~~~-~~~d~   79 (210)
                      ||+|++++|||||+|+++++.+++ +++|+|+|++   +.+.+.++++|..+.+.... ....+.+..+++.+. .+.|.
T Consensus        18 ~K~L~~i~GkPli~~~l~~l~~~~-~~~ivVv~~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~~~~~~~~l~~~~~d~   93 (252)
T 3oam_A           18 GKPLADIGGKPMIQWVYEQAMQAG-ADRVIIATDD---ERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHI   93 (252)
T ss_dssp             TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTSE
T ss_pred             CcceeeECCEEHHHHHHHHHHhCC-CCeEEEECCH---HHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhcCcCCCCE
Confidence            499999999999999999999987 8999999964   35677888888777664321 122334677777763 24689


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc--------e-EEccCCCceeee----cC--cc--------
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT--------I-KEANSESFVVRT----LD--RK--------  134 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~--------~-~~~~~~g~v~~~----~~--r~--------  134 (210)
                      +++++||+||+++++++++++.+...+  .++.+.++.++        . ...+++|.+..+    ++  |+        
T Consensus        94 vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~~~  173 (252)
T 3oam_A           94 VVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKA  173 (252)
T ss_dssp             EEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSSCC
T ss_pred             EEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCcccccccc
Confidence            999999999999999999999987654  45667776543        1 123456766542    11  21        


Q ss_pred             ---CeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEE-ecCCCCccccChhhHHHHHHHhhccc
Q 028320          135 ---TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYIT-EGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       135 ---~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~v~~v-~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                         ..+....-++|+...|......... .++..+..+.  ....|.++... ..+..++|||||+||+.++++++.|.
T Consensus       174 ~~~~~~~n~GiY~~~~~~l~~~~~~~~~-~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r~  251 (252)
T 3oam_A          174 IVQPLLRHIGIYAYRAGFINTYLDWQPS-QLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAERA  251 (252)
T ss_dssp             CCSCEEEEEEEEEEETTHHHHHHHSCCC-HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTT
T ss_pred             ccccceEEEEEEEcCHHHHHHHHcCCCC-cccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhhc
Confidence               1122223477887776664432100 0000000111  23468888875 34557899999999999999998763

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.87  E-value=1.6e-21  Score=167.08  Aligned_cols=202  Identities=15%  Similarity=0.177  Sum_probs=143.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      +||+|++++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++..+..-....+..+++..|++.++ +.+.+
T Consensus        26 ~pK~l~~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~~-~~i~~~~~~~~~~~v~~~~~~g~~~~i~~~~~~~~-~~~~~  102 (459)
T 4fce_A           26 LPKVLHPLAGKPMVQHVIDAAMKLG-AQHVHLVYGHGG-ELLKKTLADPSLNWVLQAEQLGTGHAMQQAAPHFA-DDEDI  102 (459)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCH-HHHHHHC-----CEEECSSCCCHHHHHHHHGGGSC-TTSEE
T ss_pred             CCcccCeeCCeeHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhccCCcEEEeCCCCCCcHHHHHHHHHhcC-CCCcE
Confidence            4899999999999999999999987 899999999875 56666666555443222223345789999999986 35899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccce----EEccCCCceeeecCccC-------eeeecC-CcccChH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQT-PQVIKPD  148 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~-P~~f~~~  148 (210)
                      ++++||+||+++++++++++.+.+.+.++++.+..++.    ...+ +|.+..+.++..       .+..++ -+.|+..
T Consensus       103 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~  181 (459)
T 4fce_A          103 LMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYGRIVRE-NGDVVGIVEHKDASDAQREINEINTGILVANGR  181 (459)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEE-TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHhhCCEEEEEEecCCCCcccEEEeC-CCcEEEEEECCCCChHHhhccEEEEEEEEEEHH
Confidence            99999999999999999999887666677777766552    1122 566665544321       111111 2455655


Q ss_pred             HHHHHHHHH----HhcCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320          149 LLKKGFELV----NREGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       149 ~l~~~~~~~----~~~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      .|..++...    .+.+++++|....+...|.++..+..+  ...++||||+||..++.+++.+
T Consensus       182 ~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~  245 (459)
T 4fce_A          182 DLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTE  245 (459)
T ss_dssp             HHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHH
Confidence            555554432    122367788878888888899887776  4679999999999999998755

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.87  E-value=3.1e-21  Score=147.57  Aligned_cols=175  Identities=20%  Similarity=0.131  Sum_probs=125.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC-ccHHHHHHHHHHcccCCCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~-~~~~~si~~~l~~~~~~~d~   79 (210)
                      .||+|++++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++..+....+. .+..+++..|++.++.+.+.
T Consensus        21 ~~K~l~~~~g~pli~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~   98 (199)
T 2waw_A           21 TPKQLLPLGDTTLLGATLAMARRCP-FDQLIVTLGGAA-DEVLEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEG   98 (199)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHTSS-CSEEEEEECTTH-HHHHHHSCCTTSEEEECCCCCTTCCCHHHHHHHTSCTTCSE
T ss_pred             CCEEeCEeCccCHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcccCHHHHHHHHHHhhhccCCe
Confidence            4899999999999999999999887 899999998864 45666666666555443332 23478899999998433689


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      ++++.||+||+++++++++++.  ..++.+ +++..+        |.            ..+|..|+...+..+....  
T Consensus        99 vlv~~~D~P~~~~~~i~~l~~~--~~~~~~-~~~~~~--------g~------------~~~P~~~~~~~l~~~~~~~--  153 (199)
T 2waw_A           99 IVLMLGDQPGITASAVASLIAG--GRGATI-AVCEYA--------NG------------IGHPFWVSRGVFGDLAELH--  153 (199)
T ss_dssp             EEEEETTCTTCCHHHHHHHHHH--HTTCSE-EEEEET--------TE------------EEEEEEEEGGGHHHHHTCS--
T ss_pred             EEEEeCCcccCCHHHHHHHHhh--cCCCCE-EEEecC--------Cc------------ccCCEEEcHHHHHHHHhcC--
Confidence            9999999999999999999987  333322 223221        21            0146677777666544211  


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhhc
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                       +  -.+...+++..+.++..+..+ ...+|||||+||..++.+++.
T Consensus       154 -~--~~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~~  197 (199)
T 2waw_A          154 -G--DKGVWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVVR  197 (199)
T ss_dssp             -S--TTCHHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHHH
T ss_pred             -C--CHHHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHhh
Confidence             1  123456666677778777653 478999999999999998864

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.85  E-value=4.7e-20  Score=157.85  Aligned_cols=202  Identities=16%  Similarity=0.153  Sum_probs=141.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++..+..-....+..+++..|++.++. .+.+
T Consensus        23 ~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~-~~~v   99 (456)
T 2v0h_A           23 LPKVLHTIAGKPMVKHVIDTAHQLG-SENIHLIYGHGG-DLMRTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKD-NENI   99 (456)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHHTT-CSCEEEEECTTH-HHHHHHTTTCCCEEEECSCCCCHHHHHHHHGGGCCT-TSEE
T ss_pred             CCccccEECCccHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhhcCCcEEEeCCCCCCcHHHHHHHHHhcCC-CCeE
Confidence            4899999999999999999999986 899999999864 456666555443322212233457899999988852 5789


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccce----EEccCCCceeeecCccC-------eeeecC-CcccChH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQT-PQVIKPD  148 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~-P~~f~~~  148 (210)
                      ++++||+||+++++++++++.+.+.+.++.+.+..++.    ...+ +|.+..+.++..       .+..++ ++.|+..
T Consensus       100 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~  178 (456)
T 2v0h_A          100 VVLYGDAPLITKETLEKLIEAKPENGIALLTVNLDNPTGYGRIIRE-NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGA  178 (456)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSSCTTSCEEEEE-TTEEEEEECTTTCCHHHHTCCEEEEEEEEEEHH
T ss_pred             EEEcCCcceeCHHHHHHHHHHHhcCCEEEEEeecCCCCccceEEEc-CCcEEEEEECCCCChhHhcCcEEEEEEEEEEHH
Confidence            99999999999999999998876544455555655432    1113 566655554322       123333 5778877


Q ss_pred             HHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320          149 LLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       149 ~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      .|.+.+.....    ..+++++....+...|.++..+..+  ...++||||+||+.++.++..+
T Consensus       179 ~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~  242 (456)
T 2v0h_A          179 SFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNK  242 (456)
T ss_dssp             HHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHH
Confidence            66665543211    1255677777777788888876653  4568999999999999987654

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.85  E-value=1.7e-20  Score=143.26  Aligned_cols=174  Identities=13%  Similarity=0.076  Sum_probs=119.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .||+|++++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++..+....+ ..+..+++..|++.+..+.+.
T Consensus        21 ~~K~l~~~~g~pll~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~   98 (197)
T 2wee_A           21 TPKQLLPYRDTTVLGATLDVARQAG-FDQLILTLGGAA-SAVRAAMALDGTDVVVVEDVERGCAASLRVALARVHPRATG   98 (197)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHHTT-CSEEEEEECTTH-HHHHHHSCCTTSEEEECC----CCHHHHHHHHTTSCTTEEE
T ss_pred             CCeEcCeeCCccHHHHHHHHHHhcC-CCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcccCHHHHHHHHHHHhcccCCe
Confidence            4899999999999999999999886 899999998864 4566666555655433222 234588999999988423578


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      ++++.||+||+++++++++++. . .++.+ ++|..+        |.            .++|.+|+...+..+.. .  
T Consensus        99 vlv~~~D~P~~~~~~i~~l~~~-~-~~~~i-~~~~~~--------g~------------~~~P~~~~~~~l~~l~~-~--  152 (197)
T 2wee_A           99 IVLMLGDQPQVAPATLRRIIDV-G-PATEI-MVCRYA--------DG------------VGHPFWFSRTVFGELAR-L--  152 (197)
T ss_dssp             EEEEETTCTTCCHHHHHHHHHH-G-GGSSE-EEEEET--------TE------------EEEEEEEEGGGHHHHHT-C--
T ss_pred             EEEEeCCcCCCCHHHHHHHHhh-c-CCCCE-EEEecC--------CC------------cCCCEEECHHHHHHHHh-C--
Confidence            9999999999999999999987 3 33322 233221        21            01466777766555431 1  


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhh
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      .+  -.....+++..+.++..+..+ ...+|||||+||..++.++.
T Consensus       153 ~~--~~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~~  196 (197)
T 2wee_A          153 HG--DKGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESVP  196 (197)
T ss_dssp             CS--TTHHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC--
T ss_pred             CC--ChhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHhc
Confidence            11  011235566667778777653 47899999999999887653

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.84  E-value=7.7e-20  Score=157.14  Aligned_cols=201  Identities=14%  Similarity=0.128  Sum_probs=140.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      +||+|++++|||||+|+++++.+++ +++|+|+++++. +.+.+.+.+ +  +.++.+  ..++.+++..|++.++...+
T Consensus        29 ~pK~l~~i~gkpli~~~l~~l~~~g-~~~iivv~~~~~-~~i~~~~~~-~--i~~v~~~~~~G~~~sl~~a~~~~~~~~~  103 (468)
T 1hm9_A           29 LPKVLHKVAGISMLEHVFRSVGAIQ-PEKTVTVVGHKA-ELVEEVLAG-Q--TEFVTQSEQLGTGHAVMMTEPILEGLSG  103 (468)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHTTC-CSEEEEEECTTH-HHHHHSSSS-S--SEEEECSSCCCHHHHHHTTHHHHTTCCS
T ss_pred             CCcEeeEECCccHHHHHHHHHHhcC-CCCEEEEECCCH-HHHHHHhCC-C--cEEEeCCccCChHHHHHHHHHHhccCCC
Confidence            4899999999999999999999986 899999998874 344444333 2  344433  23468889999988863358


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecCcc--------CeeeecCCcc
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRK--------TLWEMQTPQV  144 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~r~--------~~~~~~~P~~  144 (210)
                      .+++++||+||+++++++++++.+.+.++  ++.+.+..++.    ...+++|.+..+.++.        ..+....++.
T Consensus       104 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~  183 (468)
T 1hm9_A          104 HTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYV  183 (468)
T ss_dssp             EEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECTTTCCTTGGGCCEEEEEEEE
T ss_pred             eEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCCCCEEEEEECCCCChHHhcCeEEEEEEEE
Confidence            89999999999999999999998876554  44455554431    2234457776554431        1233345788


Q ss_pred             cChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320          145 IKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       145 f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      |+...|.+.+......    .++++|....+...|.++.....+  ...++||||+||..++.++..+
T Consensus       184 f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~  251 (468)
T 1hm9_A          184 FDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR  251 (468)
T ss_dssp             EEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHH
Confidence            8887666655432221    245676666666677788765433  4557899999999999887643

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.83  E-value=1.3e-19  Score=142.10  Aligned_cols=195  Identities=15%  Similarity=0.163  Sum_probs=126.7

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||+|++++|+|||+|+++++.++  +++|+|+++++   .+.+.++++ ..+.+... .......+..|++.+.  .+.+
T Consensus        18 ~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~~---~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v   89 (234)
T 2y6p_A           18 EKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSE---RVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDLD--VDLI   89 (234)
T ss_dssp             TGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESCH---HHHHHHTTT-SEEEECCTTCCSHHHHHHHHHTTCC--CSEE
T ss_pred             CCcceeECCEEHHHHHHHHHHHh--CCEEEEECChH---HHHHHHHhc-eEEEECCcccccchHHHHHHHHhCC--CCEE
Confidence            89999999999999999999887  89999999873   355666555 44433322 1122334556776664  5899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecc-------cceEE-ccCCCceeeecC------cc----CeeeecCC
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK-------ATIKE-ANSESFVVRTLD------RK----TLWEMQTP  142 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~-------~~~~~-~~~~g~v~~~~~------r~----~~~~~~~P  142 (210)
                      ++++||+||+++++++++++.+...++.++.+...       ..+.. .+++|.+..+.+      ++    ..+...++
T Consensus        90 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~e~~~~~~~~~~~~~~~~~~gi  169 (234)
T 2y6p_A           90 INYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPYFRKNDTFYPLKHVGI  169 (234)
T ss_dssp             EECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCEEEECTTSBEEEEESSCCSCCSSCCSSCCEEEEEE
T ss_pred             EEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceEEEEcCCCCEeeeecCCCCcccccccceeeEEEEE
Confidence            99999999999999999999887655433322211       12222 244566643321      22    13445678


Q ss_pred             cccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          143 QVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       143 ~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      +.|+...|..+.... ...+..++....  +...|.++..+..+..++|||||+||..++.+++.
T Consensus       170 y~~~~~~l~~~~~~~-~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~~~  233 (234)
T 2y6p_A          170 YGFRKETLMEFGAMP-PSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLKN  233 (234)
T ss_dssp             EEEEHHHHHHHHHSC-CCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHCC-
T ss_pred             EEcCHHHHHHHHhCC-CCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHHhh
Confidence            889887776544210 000000110011  22347788888777889999999999999998763

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.83  E-value=4e-20  Score=144.97  Aligned_cols=192  Identities=13%  Similarity=0.029  Sum_probs=120.1

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-----CCccHHHHHHHHHHcccCC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-----PGKERQDSVYSGLQEVDFN   76 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-----~~~~~~~si~~~l~~~~~~   76 (210)
                      +|+|++++|+|||+|+++++.+++.+++|+|+++++   .+.+.++++++.+....     +.....+++.+|++.+. +
T Consensus        19 ~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~---~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~al~~~~-~   94 (229)
T 1qwj_A           19 LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHD---EIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHN-E   94 (229)
T ss_dssp             CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCH---HHHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHHHTTCT-T
T ss_pred             CcccceECCEEHHHHHHHHHHhCCCcCEEEEECChH---HHHHHHHHcCCEEEeChhhhcCCCCcHHHHHHHHHHhcC-C
Confidence            499999999999999999999987679999999643   45677777776653321     23344688999999884 4


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccceEEccCCCc--eee--ecCcc-CeeeecCCcccChHH
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATIKEANSESF--VVR--TLDRK-TLWEMQTPQVIKPDL  149 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~g~--v~~--~~~r~-~~~~~~~P~~f~~~~  149 (210)
                      .|.+++++||+||+++++|+++++.+...++  ++++.+..++.+....+|.  +.+  +.... .......|..+..  
T Consensus        95 ~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  172 (229)
T 1qwj_A           95 VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYE--  172 (229)
T ss_dssp             CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTTCCCCBSSSBTTBCCCTTTSCCEEEE--
T ss_pred             CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhccccccccccccccccccccCCCCCCceEEE--
Confidence            6899999999999999999999998876544  4444444454332111121  100  00000 0000011111100  


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEE-EecCCCCccccChhhHHHHHHHhhcccC
Q 028320          150 LKKGFELVNREGLEVTDDVSIVE--HLKHPVYI-TEGSYTNIKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       150 l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~-v~~~~~~~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                               ..|.|..+...+..  ..|.++.+ +..+..++|||||+||+.++.+++....
T Consensus       173 ---------n~giY~~~~~~l~~~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~~~~  225 (229)
T 1qwj_A          173 ---------NGSFYFAKRHLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFGY  225 (229)
T ss_dssp             ---------EEEEEEEEHHHHHTTCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHSC
T ss_pred             ---------eeEEEEEEHHHhccccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHHhcc
Confidence                     01122222111111  13556655 4444678999999999999999887654

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.83  E-value=7.9e-22  Score=150.92  Aligned_cols=111  Identities=16%  Similarity=0.144  Sum_probs=83.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC--cEEEe-cCCccHHHHHHHHHHcccCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV--DLKFS-LPGKERQDSVYSGLQEVDFN   76 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~--~v~~~-~~~~~~~~si~~~l~~~~~~   76 (210)
                      .||+|++++|+|||+|+++++.+++ +++|+|+|+++. +.+.+.+.+ ++.  .+.++ .++.++.+|+..|++.+   
T Consensus        17 ~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~si~~al~~~---   91 (196)
T 3rsb_A           17 VEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNT-PKTKEYINSAYKDYKNIVVIDTSGKGYIEDLNECIGYF---   91 (196)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTC-HHHHHHHHHHTTTTTEEEE--------CCCCCTTTTTC---
T ss_pred             CCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHHhhccCCCCEEEEECCCCCcHHHHHHHHHhC---
Confidence            4899999999999999999999997 999999999876 556666665 331  23333 33455567788888877   


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHh-------cCCeEEeeeccc
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALR-------VGAAVLGVPAKA  116 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~-------~~~~~~~~~~~~  116 (210)
                      .+.+++++||+||+++++++++++.+..       .++.++++|..+
T Consensus        92 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~  138 (196)
T 3rsb_A           92 SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEK  138 (196)
T ss_dssp             SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETTT
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEccc
Confidence            5789999999999999999999999875       244566667653

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.82  E-value=2.7e-18  Score=137.10  Aligned_cols=199  Identities=14%  Similarity=0.219  Sum_probs=125.8

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccC-CCCE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF-NSEL   79 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~-~~d~   79 (210)
                      +|+|++++|+|||+|+++++.+++ +++|+|+++++   .+.+.++++++.+.... .......++..++..+.. +.+.
T Consensus        18 ~K~l~~~~gkpli~~~l~~l~~~~-~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~   93 (262)
T 1vic_A           18 GKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNE---NVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEI   93 (262)
T ss_dssp             TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCH---HHHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCTTCE
T ss_pred             CCccccCCCeEHHHHHHHHHHhCC-CceEEEECCcH---HHHHHHHhcCCEEEECCccccCChHHHHHHHHHhccCCCCE
Confidence            599999999999999999999987 59999999863   35666777776653321 111112234444444432 3588


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc--------eEEc-cCCCceeeec------CccCee-----
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT--------IKEA-NSESFVVRTL------DRKTLW-----  137 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~--------~~~~-~~~g~v~~~~------~r~~~~-----  137 (210)
                      +++++||+||+++++++++++.+...+  .++++.++.++        .+.+ +++|.+..+.      +|+. +     
T Consensus        94 vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~-~~~~~~  172 (262)
T 1vic_A           94 IVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQ-FMNLQD  172 (262)
T ss_dssp             EEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHH-HTTCSC
T ss_pred             EEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcc-cccccc
Confidence            999999999999999999999886553  45667777653        2222 4456553211      1221 1     


Q ss_pred             --eecCCc---------ccChHHHHHHHHHHHhc---CCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHH
Q 028320          138 --EMQTPQ---------VIKPDLLKKGFELVNRE---GLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERI  202 (210)
Q Consensus       138 --~~~~P~---------~f~~~~l~~~~~~~~~~---~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~  202 (210)
                        ..++|+         +|+...+..... ....   ..++.+... +...|.++..+..+ ..++|||||+||..|+.+
T Consensus       173 ~~~~~~p~~~~~~~giy~~~~~~l~~~~~-~~~~~~~~~e~~~~~~-~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~  250 (262)
T 1vic_A          173 VQKVQLSDAYLRHIGIYAYRAGFIKQYVQ-WAPTQLENLEKLEQLR-VLYNGERIHVELAKEVPAVGVDTAEDLEKVRAI  250 (262)
T ss_dssp             GGGCCCCTTCEEEEEEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHH-HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred             ccccccccceEEEEEEEEeeHHHHHHHHh-CCCCchhhhhhHHHHH-HHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence              124553         344444433211 0000   000111111 22358889888877 689999999999999999


Q ss_pred             hhccc
Q 028320          203 LNLSS  207 (210)
Q Consensus       203 ~~~~~  207 (210)
                      ++.+.
T Consensus       251 l~~~~  255 (262)
T 1vic_A          251 LAANG  255 (262)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            98553

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.79  E-value=3.8e-19  Score=136.37  Aligned_cols=169  Identities=14%  Similarity=0.171  Sum_probs=107.0

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      ||+|++++|+|||+|+++++.++    +|+||++++. +.+.+.++ .++ +..... ..+..+|+..|++.+. +.+.+
T Consensus        19 ~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~-~~~~~~~~-~~~-~v~~~~~~~G~~~si~~al~~~~-~~~~v   90 (197)
T 3d5n_A           19 DKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYV-NEMLPLLM-DQI-VIYNPFWNEGISTSLKLGLRFFK-DYDAV   90 (197)
T ss_dssp             SGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTH-HHHGGGCT-TSC-EEECTTGGGCHHHHHHHHHHHTT-TSSEE
T ss_pred             CeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCH-HHHHHHhc-CCE-EEECCCCCCCHHHHHHHHHHhhc-cCCcE
Confidence            89999999999999999999765    7888888763 33444333 343 222111 2345789999999986 24789


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      ++++||+||++++.++++++.+ ..++.+ ++|..+        |.            ..+|.+|+...+..+.. .  .
T Consensus        91 lv~~~D~P~i~~~~i~~l~~~~-~~~~~~-~~~~~~--------g~------------~~~P~~~~~~~l~~l~~-l--~  145 (197)
T 3d5n_A           91 LVALGDMPFVTKEDVNKIINTF-KPNCKA-VIPTHK--------GE------------RGNPVLISKSLFNEIEK-L--R  145 (197)
T ss_dssp             EEEETTCCCSCHHHHHHHHHTC-CTTCSE-EEEEET--------TE------------ECSCEEEEHHHHHHHHH-C--C
T ss_pred             EEEeCCccccCHHHHHHHHHHh-cCCCcE-EEEEeC--------Cc------------ccCCEEECHHHHHHHHc-c--C
Confidence            9999999999999999999876 433322 223221        10            12688898877666542 2  2


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhc
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      +  .++...+++..+.++..+..+  ...+|||||+||+.++.++..
T Consensus       146 g--~~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~~  190 (197)
T 3d5n_A          146 G--DVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHPL  190 (197)
T ss_dssp             T--TCCTHHHHTTSCGGGEEEEECCGGGTCCTTTC------------
T ss_pred             C--CccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhcc
Confidence            2  134566777777667766654  356899999999999887653

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.79  E-value=4e-18  Score=138.43  Aligned_cols=200  Identities=16%  Similarity=0.225  Sum_probs=133.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|||||.|+++++..++ +++|+|++++...+.+.+.+.+   ++..+.++.+  ..+...++..|++.+. 
T Consensus        24 ~pK~llpi~gkpli~~~l~~l~~~g-i~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~-  101 (295)
T 1lvw_A           24 VSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIG-  101 (295)
T ss_dssp             SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHHT-
T ss_pred             CCceecEECCeeHHHHHHHHHHHCC-CCeEEEEeccchHHHHHHHhhhccccCceEEEeeCCCCCChHHHHHHHHHHhC-
Confidence            4899999999999999999999886 8999998875444567777764   6666655533  2345778888888875 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccce----EEccCCCceeeec-----CccCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~P~~  144 (210)
                      +.++++++ ||+||.+ ..+.++++.+.+  .++.+.+.++.++.    ...+++|.+..+.     +++. +...++++
T Consensus       102 ~~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy~  178 (295)
T 1lvw_A          102 DSKVALVL-GDNVFYG-HRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSN-YVVPGLYF  178 (295)
T ss_dssp             TSCEEEEE-TTCCEEC-TTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEESCSSCSCS-EECCSEEE
T ss_pred             CCcEEEEE-CCccccC-cCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCC-EEEEEeEE
Confidence            33555555 9999998 689999988754  34556666776652    2224466665432     2333 55567788


Q ss_pred             cChHHHHHHHHHHH--hcCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhhc
Q 028320          145 IKPDLLKKGFELVN--REGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       145 f~~~~l~~~~~~~~--~~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      |+...+..+.....  ...++++|....+...|.....+.+.. .++||+|++||..|+.+++.
T Consensus       179 f~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~  242 (295)
T 1lvw_A          179 YDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIET  242 (295)
T ss_dssp             ECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHHH
T ss_pred             EcHHHHHHHHhcCCcccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHHH
Confidence            98877544322110  112455655444444553222233333 58999999999999998863

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.78  E-value=2.9e-18  Score=139.17  Aligned_cols=199  Identities=17%  Similarity=0.213  Sum_probs=132.1

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|||||.|+++++..++ +++|+|++.+...+.+.+.+.+   ++.++.++.+  ..+...++..|++.+. 
T Consensus        23 ~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~-  100 (293)
T 1fxo_A           23 ISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIG-  100 (293)
T ss_dssp             SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHT-
T ss_pred             CCceeCeECCEeHHHHHHHHHHHCC-CCEEEEEeccccHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHHhC-
Confidence            4899999999999999999999987 8999988865433566777665   6666655533  2344778888888875 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccce----EEccCCCceeeec-----CccCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~P~~  144 (210)
                       .+.++++.||+||.+ ..+.++++.+.+  .++.+.+.++.++.    ...+++|.+..+.     +++. +....+++
T Consensus       101 -~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy~  177 (293)
T 1fxo_A          101 -NDLSALVLGDNLYYG-HDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSN-YAVTGLYF  177 (293)
T ss_dssp             -TSEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEESCSSCSSS-EEEEEEEE
T ss_pred             -CCCEEEEECChhccC-ccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCCCcEEEEEECCCCCCCC-eEEEEEEE
Confidence             244555559999998 689999988753  34556666776652    1234467665432     2333 45556788


Q ss_pred             cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhhc
Q 028320          145 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       145 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      |+...+..+ ....   ...++++|....+...|.....+.+.. .++||+|++||..|+.+++.
T Consensus       178 ~~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~  241 (293)
T 1fxo_A          178 YDQQVVDIA-RDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIAT  241 (293)
T ss_dssp             ECTTHHHHH-HHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHHH
T ss_pred             EcHHHHHHH-HhcCcccCCceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHHH
Confidence            888765443 2211   112445554444444553222344434 58999999999999998763

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.76  E-value=1.2e-17  Score=133.80  Aligned_cols=200  Identities=11%  Similarity=0.050  Sum_probs=131.8

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh---hcCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~---~~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|+|||+|+++++.+++ +++|+|+++++....+.+.+.   .++..+.++..  ..+..+++..|++.++ 
T Consensus        45 ~pK~ll~i~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~-  122 (269)
T 4ecm_A           45 TNKHLLPVGRYPMIYHAVYKLKQCD-ITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVG-  122 (269)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCHHHHHHTTHHHHT-
T ss_pred             CCceecEECCEEHHHHHHHHHHHCC-CCEEEEECChhhHHHHHHHHhhccccCceEEEeeCCccCcHHHHHHHHHHhcC-
Confidence            4899999999999999999999986 899999999765445556554   24556655533  2345788888888875 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----eEEccCCCceeeecCccC---eeeec-CCccc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEMQ-TPQVI  145 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~~-~P~~f  145 (210)
                       .+.++++.||+|+.  .+++++++.+...+  +++.+.++.++    ....+ +|.+..+.++..   .+... .-++|
T Consensus       123 -~~~~lv~~~D~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d-~g~v~~~~ekp~~~~~~~~~~Giy~~  198 (269)
T 4ecm_A          123 -NDRMVVILGDNIFS--DDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQ-NRKIIEIEEKPKEPKSSYAVTGIYLY  198 (269)
T ss_dssp             -TSEEEEEETTEEES--SCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEE-TTEEEEEEESCSSCSCSEEEEEEEEE
T ss_pred             -CCcEEEEeCCccCc--cCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEc-CCEEEEEEECCCCCCCcEEEEEEEEE
Confidence             57889999999985  78999998887654  34555555443    11223 466654432210   11111 12456


Q ss_pred             ChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320          146 KPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       146 ~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                      +...| ..+....   ...+++++....+...| ++.....+..++|||||+||..|+..+...+.
T Consensus       199 ~~~~l-~~l~~~~~~~~ge~~l~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~~  262 (269)
T 4ecm_A          199 DSKVF-SYIKELKPSARGELEITDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDINF  262 (269)
T ss_dssp             CTTHH-HHHTSCCBCTTSCBCHHHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTCCC
T ss_pred             CHHHH-HhhhhcCCCCCCeeeHHHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhccc
Confidence            65554 3333211   11244455444444556 67766666688999999999999999886654

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=99.76  E-value=4.6e-17  Score=125.81  Aligned_cols=170  Identities=18%  Similarity=0.265  Sum_probs=110.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-cCCccHHHHHHHHHHcccCCCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-~~~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .||+|++++|+|||+|+++++.++    +|+||++++  +.+..+.+.++..+..- ..+.++..|+..|++.+   .+.
T Consensus        16 ~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~--~~~~~~~~~~~~~~v~d~~~~~G~~~si~~gl~~~---~~~   86 (208)
T 3ngw_A           16 MEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDE--KQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALRHF---GSC   86 (208)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSH--HHHHHHHTTSCSCEECCTTCCCSHHHHHHHHHHHH---SSE
T ss_pred             CCCcccEECCeeHHHHHHHHhcCC----CEEEEECCH--HHHHHHHHhcCCeEEecCCCCCChHHHHHHHHHHc---CCC
Confidence            389999999999999999999865    899998753  33444444466554321 12456789999999988   478


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHHH
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFELV  157 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~~  157 (210)
                      + ++.||+||++++.++++++.+...+..+. +|. +.      .+               .|-  +|+...+..+....
T Consensus        87 v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v-~~~-~g------~~---------------~Pl~al~~~~~~~~l~~~l  142 (208)
T 3ngw_A           87 V-VAAIDMPFVKPEVLEHLYKEGEKAGCDAL-IPK-HD------YP---------------EPLLAYYAESAADELERAI  142 (208)
T ss_dssp             E-EEETTCTTCCHHHHHHHHHHHHHHTCSEE-EEE-SS------SB---------------CTTEEEECGGGHHHHHHHH
T ss_pred             E-EEECCccCCCHHHHHHHHHHhhcCCCCEE-EEc-CC------Ce---------------eEEEEEEcHHHHHHHHHHH
Confidence            8 99999999999999999998874333221 122 21      11               242  36655554433322


Q ss_pred             HhcCCCCCcHHHHHHhCCCCeEEEecC---------CCCccccChhhHHHHHHHhhcccC
Q 028320          158 NREGLEVTDDVSIVEHLKHPVYITEGS---------YTNIKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       158 ~~~~~~~~d~~~~~~~~g~~v~~v~~~---------~~~~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                       ..|-  ..-..+++..+  +..+..+         ...++||||+||+.++++++...-
T Consensus       143 -~~G~--~~~~~~l~~~~--~~~v~~~~~~~~d~~~~~~~ninTpeDl~~~~~~~~~~~~  197 (208)
T 3ngw_A          143 -LQGI--RKILVPLERLN--VVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMST  197 (208)
T ss_dssp             -HTTC--CCTHHHHHTSC--EEEEEGGGGTTTCTTCGGGCCCCSHHHHHHHHHHHHHC--
T ss_pred             -HcCC--CCHHHHHHhCC--EEEecHHHhcccCcccceEEecCCHHHHHHHHHHhccccc
Confidence             1221  11234455443  4444332         246899999999999999876554

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.72  E-value=1.5e-17  Score=135.07  Aligned_cols=198  Identities=14%  Similarity=0.220  Sum_probs=128.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|||||.|+++++..++ +++|+|++++...+.+.+.+.+   +|.++.++.+  ..+..+++..|++.+. 
T Consensus        24 ~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~-  101 (296)
T 1mc3_A           24 VSKQLLPIYDKPMIYYPLSVLMLAG-IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLN-  101 (296)
T ss_dssp             SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHHT-
T ss_pred             CCceeeEECCeeHHHHHHHHHHhCC-CCcEEEEechhHHHHHHHHHhcccccCceEEEeccCCCCCHHHHHHHHHHHhC-
Confidence            4899999999999999999999886 8999999875444566777754   5666655432  2234678888888875 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccceE----EccCCCceeeecC-----ccCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIK----EANSESFVVRTLD-----RKTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~~~~----~~~~~g~v~~~~~-----r~~~~~~~~P~~  144 (210)
                      +.++++++ ||+||.+ ..+.++++.+..  .++.+.+.++.++..    ..+++|.+..+.+     ++. +....+++
T Consensus       102 ~~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy~  178 (296)
T 1mc3_A          102 GEPSCLVL-GDNIFFG-QGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSN-WAVTGLYF  178 (296)
T ss_dssp             TSCEEEEE-TTEEEEC-SSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCBSCSSCSCS-EEEEEEEE
T ss_pred             CCCEEEEE-CCccccc-cCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCC-EEEEEEEE
Confidence            23455555 9999998 688889887743  345566667666531    1244566654322     222 34445678


Q ss_pred             cChHHHHHHHHHHH--hc-CCCCCcHHHHHHhCCCCeEE-EecCC-CCccccChhhHHHHHHHhhc
Q 028320          145 IKPDLLKKGFELVN--RE-GLEVTDDVSIVEHLKHPVYI-TEGSY-TNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       145 f~~~~l~~~~~~~~--~~-~~~~~d~~~~~~~~g~~v~~-v~~~~-~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      |+...+.. +....  .. .++++|....+...| ++.+ +.+.. .++||+|++||..++.+++.
T Consensus       179 ~~~~~l~~-~~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~  242 (296)
T 1mc3_A          179 YDSKVVEY-AKQVKPSERGELEITSINQMYLEAG-NLTVELLGRGFAWLDTGTHDSLIEASTFVQT  242 (296)
T ss_dssp             CCTHHHHH-HHSCCCCSSSSCCHHHHHHHHHHTT-CEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred             EcHHHHHH-HHhcCccccCCccHHHHHHHHHhcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence            88766543 22211  11 244555444444445 3443 33333 48999999999999998763

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.70  E-value=6.1e-17  Score=130.41  Aligned_cols=199  Identities=11%  Similarity=0.126  Sum_probs=128.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh------------------------cCCcEEEe
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------------------INVDLKFS   56 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~------------------------~~~~v~~~   56 (210)
                      +||+|+|++|||||+|+++++.+++ +++|+|++++.. +.+.+.+.+                        ++..+.++
T Consensus        23 ~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~  100 (281)
T 3juk_A           23 IPKEMLPIVDKPLIQYAVEEAMEAG-CEVMAIVTGRNK-RSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYV  100 (281)
T ss_dssp             SCGGGCBSSSSBHHHHHHHHHHHHT-CCEEEEEECTTH-HHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEEE
T ss_pred             CCcccceECCEEHHHHHHHHHHhCC-CCEEEEEecCCH-HHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEEE
Confidence            4899999999999999999999986 899999999765 455555433                        23455555


Q ss_pred             cC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHH----HHHHHHHHHHhcCC-eEEeeec--ccc----eEEccC
Q 028320           57 LP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK----DVQKVLMDALRVGA-AVLGVPA--KAT----IKEANS  123 (210)
Q Consensus        57 ~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~----~i~~~i~~~~~~~~-~~~~~~~--~~~----~~~~~~  123 (210)
                      .+  ..+..+++..|+..+.  .+.++++.||+ +++.+    .++++++.+...++ .+.+.++  .++    +...++
T Consensus       101 ~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~g~v~~~~  177 (281)
T 3juk_A          101 RQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEW  177 (281)
T ss_dssp             ECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCEEEEEECCTTTGGGSEEEEEEE
T ss_pred             ecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCCEEEEEEechhhcccCCEEEecc
Confidence            43  2345788999998885  36788999999 88888    89999998876654 3334333  222    112232


Q ss_pred             --CC--ceeeecCccC-----eeeec-CCcccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCccc
Q 028320          124 --ES--FVVRTLDRKT-----LWEMQ-TPQVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKV  190 (210)
Q Consensus       124 --~g--~v~~~~~r~~-----~~~~~-~P~~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dI  190 (210)
                        +|  .+..+.+...     ..... .-++|+...| ..+....   ...+++++....+...| ++.....+..++||
T Consensus       178 ~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l-~~l~~~~~~~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~dI  255 (281)
T 3juk_A          178 LEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIF-EILSETKPGKNNEIQITDALRTQAKRK-RIIAYQFKGKRYDC  255 (281)
T ss_dssp             EETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHHTCCCCGGGSCCHHHHHHHHHHHS-CCEEEECCSEEEET
T ss_pred             CCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHH-HHHHhcCCCCCCceeHHHHHHHHHhcC-CEEEEEeCCeEEcC
Confidence              45  5654432110     01111 1245565554 3343321   12355555444444445 67666556678999


Q ss_pred             cChhhHHHHHHHhhcc
Q 028320          191 TTPDDLLIAERILNLS  206 (210)
Q Consensus       191 dt~~Dl~~a~~~~~~~  206 (210)
                      +||+||..|+..+...
T Consensus       256 gt~~d~~~a~~~l~~~  271 (281)
T 3juk_A          256 GSVEGYIEASNAYYKK  271 (281)
T ss_dssp             TSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999877643

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=1.7e-16  Score=130.45  Aligned_cols=200  Identities=12%  Similarity=0.123  Sum_probs=125.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh------------------------cCCcEEEe
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------------------INVDLKFS   56 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~------------------------~~~~v~~~   56 (210)
                      +||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+.+                        ++..+.++
T Consensus        33 ~pK~ll~i~gkpli~~~l~~l~~~g-i~~iivv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~i~~~  110 (323)
T 2pa4_A           33 VPKELLPVVDTPGIELIAAEAAELG-ATRLAIITAPNK-AGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPV  110 (323)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHCEEEEE
T ss_pred             CCceeeeECCEEHHHHHHHHHHhCC-CCEEEEEecCcH-HHHHHHHhccchhhhhhhccchhhhhhhhhccccCcceEEE
Confidence            4899999999999999999999886 899999999865 344443321                        23445444


Q ss_pred             cC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC-HHHHHHHHHHHHhcCCe-EEeeecc--c--ce--EEcc----
Q 028320           57 LP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGAA-VLGVPAK--A--TI--KEAN----  122 (210)
Q Consensus        57 ~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~-~~~i~~~i~~~~~~~~~-~~~~~~~--~--~~--~~~~----  122 (210)
                      ..  ..+..+++..|+..+..+.+.++++.||+|+ + +.+++.+++.+...+++ +.+.++.  +  ..  ...+    
T Consensus       111 ~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~yg~v~~d~~~~  189 (323)
T 2pa4_A          111 TQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTK  189 (323)
T ss_dssp             ECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEEEECCGGGGGGSEEEEEEECCS
T ss_pred             eCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEEEEecccccCCccEEEeCCccc
Confidence            32  2345788888888875334568999999999 7 79999999988766653 3334442  1  11  1112    


Q ss_pred             CCC--ceeeecCcc------CeeeecCCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCcccc
Q 028320          123 SES--FVVRTLDRK------TLWEMQTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVT  191 (210)
Q Consensus       123 ~~g--~v~~~~~r~------~~~~~~~P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dId  191 (210)
                      ++|  .+..+.+..      ..+..-.-++|+.+.| ..+.....   ..+++++....+...|.++..+..+..++|||
T Consensus       190 ~~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~-~~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIg  268 (323)
T 2pa4_A          190 DSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIF-DALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLG  268 (323)
T ss_dssp             STTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHH-HHHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECS
T ss_pred             CCCceeEEEEEECCCCccccccEEEEEEEEECHHHH-HHHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCC
Confidence            233  454433211      0011111235665543 33433211   12444544444445677888776666789999


Q ss_pred             ChhhHHHHHHHhh
Q 028320          192 TPDDLLIAERILN  204 (210)
Q Consensus       192 t~~Dl~~a~~~~~  204 (210)
                      ||+||..++..+.
T Consensus       269 t~~dl~~a~~~~~  281 (323)
T 2pa4_A          269 NPGGYIPACVDFG  281 (323)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999986544

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.70  E-value=2e-16  Score=121.49  Aligned_cols=165  Identities=13%  Similarity=0.093  Sum_probs=104.0

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d   78 (210)
                      .||+|++++|+|||+|+++++..  .+++|+||++++. ..    ..+++..+...  .++.+...++..|++.++  .+
T Consensus        23 ~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~----~~~~~~~~v~~~~~~~~G~~~si~~~l~~~~--~~   93 (201)
T 1e5k_A           23 VDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EI----YQASGLKVIEDSLADYPGPLAGMLSVMQQEA--GE   93 (201)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HH----HHTTSCCEECCCTTCCCSHHHHHHHHHHHCC--SS
T ss_pred             CCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HH----HhhcCCeEEecCCCCCCCHHHHHHHHHHhCC--CC
Confidence            48999999999999999999984  3799999998764 22    22355443221  222567899999999985  58


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFEL  156 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~  156 (210)
                      .++++.||+||++++.++.+++.  ..++.+ +++..        ++..             .|-  +|+...+..+...
T Consensus        94 ~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~-~~~~~--------~~~~-------------~Pl~~~~~~~~~~~l~~~  149 (201)
T 1e5k_A           94 WFLFCPCDTPYIPPDLAARLNHQ--RKDAPV-VWVHD--------GERD-------------HPTIALVNRAIEPLLLEY  149 (201)
T ss_dssp             EEEEEETTCTTCCTTHHHHHHHT--CTTCSE-EEEEC--------SSCE-------------EEEEEEEETTHHHHHHHH
T ss_pred             cEEEEeCCcCcCCHHHHHHHHhh--cCCCCE-EEEec--------CCcc-------------ccEEEEEcHHHHHHHHHH
Confidence            89999999999999999999986  233322 22211        1110             121  4554444433222


Q ss_pred             HHhcCCCCCcHHHHHHhCCCCeEEEe-cCCCCccccChhhHHHHHH
Q 028320          157 VNREGLEVTDDVSIVEHLKHPVYITE-GSYTNIKVTTPDDLLIAER  201 (210)
Q Consensus       157 ~~~~~~~~~d~~~~~~~~g~~v~~v~-~~~~~~dIdt~~Dl~~a~~  201 (210)
                      . ..|-  .....+++..+.....+. .....+|||||+||+.++.
T Consensus       150 l-~~g~--~~~~~~l~~~~~~~v~~~~~~~~~~didTpeDl~~~~~  192 (201)
T 1e5k_A          150 L-QAGE--RRVMVFMRLAGGHAVDFSDHKDAFVNVNTPEELARWQE  192 (201)
T ss_dssp             H-HTTC--CCHHHHHHHTTCEEEECTTSTTTTCCCCSHHHHHTTC-
T ss_pred             H-HcCC--ccHHHHHHHCCcEEEecCCCCCccccCCCHHHHHHHHH
Confidence            1 1221  123445555443322222 2346789999999987643

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.70  E-value=1.3e-15  Score=132.11  Aligned_cols=204  Identities=14%  Similarity=0.168  Sum_probs=148.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh----hcCCcEEEecCC--ccHHHHHHHHHHccc
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE----KINVDLKFSLPG--KERQDSVYSGLQEVD   74 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~----~~~~~v~~~~~~--~~~~~si~~~l~~~~   74 (210)
                      .||+|+|++|||||+|+++++.+++ +++|+|++++.. +.+++.+.    .++..+.++.+.  .+..++++.+++.+.
T Consensus        30 ~pK~l~pv~gkp~i~~~l~~~~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~Av~~a~~~l~  107 (501)
T 3st8_A           30 TPKVLHTLAGRSMLSHVLHAIAKLA-PQRLIVVLGHDH-QRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALP  107 (501)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHHHC-CSEEEEEECTTH-HHHHHHHHHHHHHHTSCCEEEECSSCCCHHHHHHHHHTTSC
T ss_pred             CCHHHeEECChhHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHHHHHHhcCCcEEEEEcCCCCCcHHHHHHHHHHhc
Confidence            4899999999999999999999996 899999999875 45555543    456677776542  235889999999996


Q ss_pred             CC-CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecCcc-------Ceeeec
Q 028320           75 FN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRK-------TLWEMQ  140 (210)
Q Consensus        75 ~~-~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~r~-------~~~~~~  140 (210)
                      .+ .+.++++.+|.||++.+.+.++++.....++  .+...++.+|.    ...+++|.+..+++..       .+..++
T Consensus       108 ~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~g~v~~ivEk~~~~~~~~~i~~in  187 (501)
T 3st8_A          108 DDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVN  187 (501)
T ss_dssp             TTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHHCCEEE
T ss_pred             cccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccceeEEeeccccCCChhhccceeee
Confidence            43 4689999999999999999999998876654  45566666552    2225567776665431       122222


Q ss_pred             C-CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320          141 T-PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       141 ~-P~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      + -++|....|..++.....    .++|++|...++...|..+.....+  ....+++++.++..++..++.+
T Consensus       188 ~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r  260 (501)
T 3st8_A          188 AGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRR  260 (501)
T ss_dssp             EEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             ceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhh
Confidence            2 256777777776654332    2367898888888888888765543  3557899999999988877654

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.68  E-value=7.3e-16  Score=125.56  Aligned_cols=200  Identities=15%  Similarity=0.120  Sum_probs=130.7

Q ss_pred             Cccceec--CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCC-----------------
Q 028320            2 PKQYLPL--LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG-----------------   59 (210)
Q Consensus         2 ~K~l~~i--~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~-----------------   59 (210)
                      ||+|+++  +|+|||+|+++++.+++ +++|+|++++...+.+.+.+.+   .+.++.++.+.                 
T Consensus        22 ~K~l~~ig~~g~pli~~~l~~~~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  100 (303)
T 3pnn_A           22 LKQLDGIGPGGDTIMDYSVYDAIRAG-FGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKP  100 (303)
T ss_dssp             BCCCCCCSTTSCCHHHHHHHHHHHHT-CCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEEECCTTCCCTTCCCCTTCCSC
T ss_pred             CceEeEcCCCCeeHHHHHHHHHHHCC-CCeEEEEcCchHHHHHHHHHHHHhccCCcEEEEeccccccccccccccccccc
Confidence            6999999  69999999999998886 8999999998743456555543   13455554332                 


Q ss_pred             ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHh---cCC--eEEeeecccc----------eEEccCC
Q 028320           60 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR---VGA--AVLGVPAKAT----------IKEANSE  124 (210)
Q Consensus        60 ~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~---~~~--~~~~~~~~~~----------~~~~~~~  124 (210)
                      .+..+++..|++.++   +.++++.||. +++.+.++.+++....   .++  ++.+.++.++          +...+++
T Consensus       101 ~Gt~~al~~a~~~i~---~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~  176 (303)
T 3pnn_A          101 WGTNHAVLMGRDAIR---EPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEK  176 (303)
T ss_dssp             CCHHHHHHTTTTTCC---SCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTT
T ss_pred             CCcHHHHHHHHHhcC---CCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEeeCCC
Confidence            345778888887773   4567788999 7899999999998764   333  4445555444          2223446


Q ss_pred             CceeeecCccCe----------------------eeecC-CcccChHHHHHHHHH--------HH---hcCCCCCcHHHH
Q 028320          125 SFVVRTLDRKTL----------------------WEMQT-PQVIKPDLLKKGFEL--------VN---REGLEVTDDVSI  170 (210)
Q Consensus       125 g~v~~~~~r~~~----------------------~~~~~-P~~f~~~~l~~~~~~--------~~---~~~~~~~d~~~~  170 (210)
                      |.+..+.++...                      ..+.+ -++|+...|.. +..        ..   +.+++++|....
T Consensus       177 g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~-l~~~~~~~l~~~~~~~~~e~~l~d~i~~  255 (303)
T 3pnn_A          177 HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDY-SEELFINFLNAHGQEPKSEFFIPFVVND  255 (303)
T ss_dssp             SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHH-HHHHHHHHHHHHTTCSSCCCCHHHHHHH
T ss_pred             CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHH-HHHHHHHHHHhcCCCcCCcEEhHHHHHH
Confidence            777654432111                      01111 14455544332 222        11   122556766555


Q ss_pred             HHhCCC-CeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320          171 VEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       171 ~~~~g~-~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      +...|. ++.....+..++||+||+||..|++.+++..
T Consensus       256 li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~~  293 (303)
T 3pnn_A          256 LIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELT  293 (303)
T ss_dssp             HHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHHH
T ss_pred             HHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHHH
Confidence            555675 7887777778999999999999999988654

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.66  E-value=1.7e-15  Score=120.51  Aligned_cols=199  Identities=11%  Similarity=0.065  Sum_probs=126.4

Q ss_pred             CCccceecCCeehHHHHHHHHhc-CCCCCeEEEEeCCCCh--HHHHHHHhhcCCc---EEEecC-CccHHHHHHHHHHcc
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSR-MVEVKEIVVVCDPSYS--DIFEETKEKINVD---LKFSLP-GKERQDSVYSGLQEV   73 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~-~~~~~~ivVv~~~~~~--~~i~~~~~~~~~~---v~~~~~-~~~~~~si~~~l~~~   73 (210)
                      +||+|+|++|||||+|+++++.+ ++ +++|+|++++...  +.+.+.+++++.+   +....+ ..+..+|+..|+..+
T Consensus        20 ~PK~llpv~gkpli~~~l~~l~~~~g-i~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~av~~a~~~l   98 (255)
T 4evw_A           20 QPKYMLEAHGQTLFEHSVNSFAAYFA-STPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEEL   98 (255)
T ss_dssp             SCGGGCEETTEEHHHHHHGGGGGGTT-TSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEESSCCSSHHHHHHHHHHHH
T ss_pred             CCccccEECCeEHHHHHHHHHhccCC-CceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            59999999999999999999998 55 8999999988642  3455555555532   222222 234488999999988


Q ss_pred             c----CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc---eEEccCCC--ceeeecCccCe-eeec-CC
Q 028320           74 D----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IKEANSES--FVVRTLDRKTL-WEMQ-TP  142 (210)
Q Consensus        74 ~----~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~g--~v~~~~~r~~~-~~~~-~P  142 (210)
                      .    ...+.++++.||. +++...+..+   ....++.+.+.++.++   ....+++|  .|.++.+.... .... .-
T Consensus        99 ~~~~~~~~~~~lV~~gD~-l~~~~~~~~~---~~~~~~~i~~~~~~~p~yG~v~~d~~g~~~V~~i~EK~~~s~~~~~Gi  174 (255)
T 4evw_A           99 AKQGVDYQGSITVFNIDT-FRPNFVFPDI---SQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVIQTAEKNPISDLCSTGL  174 (255)
T ss_dssp             HHTTCCCCSCEEECCTTE-ECTTCCCCGG---GGSSSEEEEEEECCSSCSCEEEESSTTCCBEEEEESSSCSSSEEEEEE
T ss_pred             hhcccCCCCcEEEEeCCE-EEecchhHHH---hhcCCcEEEEEecCCCceeEEEECCCCCeEEEEEEeccCccCcEEEeE
Confidence            2    2245688999998 7754444332   1223445555565544   12224456  77766553211 0111 22


Q ss_pred             cccChH-HHHHHHHHHH--------hcCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhh
Q 028320          143 QVIKPD-LLKKGFELVN--------REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       143 ~~f~~~-~l~~~~~~~~--------~~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      +.|+.. .|.+++....        +.++|++|....+...|.++.....+ ..++||+||+||+.+++.-+
T Consensus       175 Y~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~~  246 (255)
T 4evw_A          175 YHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQPQ  246 (255)
T ss_dssp             EEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC--
T ss_pred             EEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcCC
Confidence            456553 3444443211        23478898877777788888877654 68999999999999987654

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.66  E-value=8.6e-16  Score=120.46  Aligned_cols=86  Identities=16%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.+++ + +|+|++..+.   +.+.+   +  +.+ .++.++.+|+..|++.++   +.+
T Consensus        22 ~~K~l~~i~g~pll~~~l~~l~~~~-~-~ivvv~~~~~---i~~~~---~--~~~-~~~~g~~~~i~~a~~~~~---~~~   87 (232)
T 2dpw_A           22 GSKALVPYRGRPMVEWVLEALYAAG-L-SPVYVGENPG---LVPAP---A--LTL-PDRGGLLENLEQALEHVE---GRV   87 (232)
T ss_dssp             SBGGGSEETTEETHHHHHHHHHHTT-C-EEEEESCCSS---CSSCC---S--EEE-CCCSSHHHHHHHHHHTCC---SEE
T ss_pred             CCceeeEECCEEHHHHHHHHHHhcC-C-EEEEEeChHH---Hhhhc---C--eEe-cCCCCHHHHHHHHHHHcC---CCE
Confidence            4899999999999999999999886 4 8888766522   22221   3  333 455677899999999885   789


Q ss_pred             EEEeCCCCCCCHHHHHHHHH
Q 028320           81 CIHDSARPLVLSKDVQKVLM  100 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~  100 (210)
                      ++++||+||+++++++++++
T Consensus        88 lv~~~D~P~~~~~~i~~l~~  107 (232)
T 2dpw_A           88 LVATGDIPHLTEEAVRFVLD  107 (232)
T ss_dssp             EEEETTCTTCCHHHHHHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHh
Confidence            99999999999999999998

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.64  E-value=1.5e-15  Score=123.22  Aligned_cols=197  Identities=12%  Similarity=0.139  Sum_probs=116.8

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-----------------------cCCcEEEec
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-----------------------INVDLKFSL   57 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-----------------------~~~~v~~~~   57 (210)
                      +||+|+|++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+.+                       .+..+.++.
T Consensus        35 ~pK~ll~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~i~~~~  112 (297)
T 2ux8_A           35 MPKEMLPVVDRPLIQYAVDEAVEAG-IEQMIFVTGRGK-SALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVR  112 (297)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTTSEEEEE
T ss_pred             CCceeeeECCeEHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHhhhhhhhhhhhhccchhhhhhhcccCCCceEEEe
Confidence            4999999999999999999999886 899999999864 445554432                       234555543


Q ss_pred             C--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC--HHHHHHHHHHHHhcCCe-EEeeec--ccc--eEEc--c--CC
Q 028320           58 P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVL--SKDVQKVLMDALRVGAA-VLGVPA--KAT--IKEA--N--SE  124 (210)
Q Consensus        58 ~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~--~~~i~~~i~~~~~~~~~-~~~~~~--~~~--~~~~--~--~~  124 (210)
                      .  ..+..+++..|+..+.  .+.++++.||+|+ +  +.+++++++.+.+.+++ +.+.++  .++  ...+  +  ++
T Consensus       113 ~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~yg~v~~~~~~~  189 (297)
T 2ux8_A          113 QQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQDG  189 (297)
T ss_dssp             CCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHCSEEEEEC-----------CCCCCCBCS
T ss_pred             CCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcCCCEEEEEecCcccCCCCCeEEecccCC
Confidence            2  2345788888888875  4778999999994 6  68999999988766543 333333  121  1111  1  13


Q ss_pred             C--ceeeecCccC-----eeeec-CCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCccccCh
Q 028320          125 S--FVVRTLDRKT-----LWEMQ-TPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTP  193 (210)
Q Consensus       125 g--~v~~~~~r~~-----~~~~~-~P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~  193 (210)
                      |  .+..+.+...     -+... .-++|+...+ ..+.....   ..+++++....+...| ++..+..+..++||||+
T Consensus       190 ~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~~w~dIgt~  267 (297)
T 2ux8_A          190 VLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVM-RILENQGKGAGGEIQLTDAMQRMIGDQ-PFHGVTFQGTRYDCGDK  267 (297)
T ss_dssp             SEEEC--------------CCCEEEEEEECTHHH-HHHHHTC--------CCTTGGGGTTTS-CEEEEECSSEEEETTSH
T ss_pred             CceeEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhhCCCCCCeeEHHHHHHHHHhcC-CEEEEEecceEEeCCCH
Confidence            3  3433322110     00000 1134665543 33433211   1244555433332234 77776666678999999


Q ss_pred             hhHHHHHHHhh
Q 028320          194 DDLLIAERILN  204 (210)
Q Consensus       194 ~Dl~~a~~~~~  204 (210)
                      +||..++..+.
T Consensus       268 ~dl~~a~~~~~  278 (297)
T 2ux8_A          268 AGFIQANLAVA  278 (297)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999996544

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.64  E-value=1.7e-15  Score=120.46  Aligned_cols=193  Identities=16%  Similarity=0.106  Sum_probs=116.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      .||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+...++.++..+.....  ..+..+++..|+..++   +
T Consensus        46 ~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~iv~~~~~~~~g~~~al~~a~~~~~---~  120 (254)
T 1jyk_A           46 TPKALVQVNQKPLIEYQIEFLKEKG-INDIIIIVGYLK-EQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA---N  120 (254)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHHTT-CCCEEEEECTTG-GGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT---T
T ss_pred             CCCEEeeECCEEHHHHHHHHHHHCC-CCeEEEEeCCcH-HHHHHHHHhCCcEEEECCCccCCCcHHHHHHHHHHCC---C
Confidence            4899999999999999999999886 899999998764 3455555566655433222  1233677887777763   3


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc---eE-EccCCCceeeecCccCeeeecCC-cccChH---HH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IK-EANSESFVVRTLDRKTLWEMQTP-QVIKPD---LL  150 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~-~~~~~g~v~~~~~r~~~~~~~~P-~~f~~~---~l  150 (210)
                       ++++.||+|+.. +.++.+++    .++.++ ....++   .. ..+++|.+..+.++.......+. +.|+..   .|
T Consensus       121 -~lv~~~D~~~~~-~~~~~~~~----~~~~~t-~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~Giy~~~~~~~~~l  193 (254)
T 1jyk_A          121 -SYVIDADNYLFK-NMFRNDLT----RSTYFS-VYREDCTNEWFLVYGDDYKVQDIIVDSKAGRILSGVSFWDAPTAEKI  193 (254)
T ss_dssp             -EEEEETTEEESS-CCCCSCCC----SEEEEE-CEESSCSSCCEEEECTTCBEEEEECCCSSEEBCCSEEEECHHHHHHH
T ss_pred             -EEEEeCCcccCH-HHHHHHHh----CCceEE-EEcccCCCCeEEEECCCCeEEEEEECCCCCcEEEEEEEEcHHHHHHH
Confidence             678999999998 66554432    222222 222221   11 23445766655443222122222 345543   33


Q ss_pred             HHHHHHHHhcC----CCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhhcc
Q 028320          151 KKGFELVNREG----LEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       151 ~~~~~~~~~~~----~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      ..++.....++    +|+++....+ ..+.++.....+ ..+.+|||++||..++.+++..
T Consensus       194 ~~~l~~~~~~~~~~e~~~~d~~~~l-~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~~  253 (254)
T 1jyk_A          194 VSFIDKAYVSGEFVDLYWDNMVKDN-IKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE  253 (254)
T ss_dssp             HHHHHHHHTTTCCTTCCTTHHHHTT-GGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhcCCccccCHHHHHHHH-HhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhhc
Confidence            44444332222    3455432212 345677766554 5789999999999999998764

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.63  E-value=3.9e-16  Score=131.56  Aligned_cols=193  Identities=15%  Similarity=0.239  Sum_probs=116.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||+|+++++.+++ +++|+|+++++ +   .+.+.+....+.++.+... ..+...++..... .+.+
T Consensus        21 ~~K~ll~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~-i---~~~~~~~~~~i~~~~~~~~-~~g~~~~l~~~~~-~~~~   93 (401)
T 2ggo_A           21 RPKAFVPILSKPLIEYQIEYLRKCG-IRDITVIVSSK-N---KEYFEKKLKEISIVTQKDD-IKGTGAAILSAKF-NDEA   93 (401)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGG-G---HHHHHHHCTTCEEEECCTT-CCBSTTTGGGCCC-SSEE
T ss_pred             CCcceeeECCEeHHHHHHHHHHHCC-CCEEEEEeCHH-H---HHHhhccCCcEEEEeCCCC-CCChHHHHHHhcc-CCCE
Confidence            4899999999999999999999986 89999999886 3   3444433212344433210 0112233333322 4678


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccce----EEccCCCceeeecC-----ccCeeeecCCcccChHHHH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLD-----RKTLWEMQTPQVIKPDLLK  151 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~-----r~~~~~~~~P~~f~~~~l~  151 (210)
                      +++.||+||.+++.++++++   ..+.++++.++.++.    ...+++|.+..+.+     ++.++.. .-+.|+.+.|.
T Consensus        94 lv~~~D~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~v~~~~~g~v~~~~ek~~~~~~~~~~~-Giy~~~~~~~~  169 (401)
T 2ggo_A           94 LIIYGDLFFSNEKEICNIIT---LKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLINA-GIYKLNSDIFT  169 (401)
T ss_dssp             EEEETTEEESCSHHHHHHTT---CSSEEEEEEECSCCSSSCEEEECTTSSEEEEECSCSSCSCSEEEE-EEEEEETHHHH
T ss_pred             EEEeCccccccHHHHHHHHH---hcCCEEEEEEcCCCcceeEEEECCCCeEEEEEECCCCCCCcEEEE-EEEEEcHHHHH
Confidence            89999999999999999987   334455566654431    11233465554332     2222220 01234444432


Q ss_pred             HHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320          152 KGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       152 ~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                       .+....   ...+++++....+ ..|.++..+..+..++|||||+||..++.++..+
T Consensus       170 -~l~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~  225 (401)
T 2ggo_A          170 -YLDKISISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDN  225 (401)
T ss_dssp             -HHHHSCCCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHH
T ss_pred             -HhhhcCcCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHh
Confidence             233221   1123344433334 4466787777766889999999999999987654

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.62  E-value=2.5e-15  Score=115.36  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=71.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~   79 (210)
                      .||+|++++|+|||+|+++++.++  +++|+|+++++..    +...  ++.+.... .+.+..+++..|++.++  .+.
T Consensus        30 ~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~----~~~~--~~~~v~~~~~~~g~~~~i~~al~~~~--~~~   99 (201)
T 2e8b_A           30 EDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK----FSFL--NAPVVLDEFEESASIIGLYTALKHAK--EEN   99 (201)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG----GGGG--TCCEEECCCSSCCHHHHHHHHHHHCS--SSE
T ss_pred             CCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH----hhcC--CceEEecCCCCCCcHHHHHHHHHHcC--CCC
Confidence            389999999999999999999876  7999999998753    1111  44433222 24567899999999885  578


Q ss_pred             EEEEeCCCCCCCHHHHHH-HH
Q 028320           80 VCIHDSARPLVLSKDVQK-VL   99 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~-~i   99 (210)
                      ++++.||+||++++.+++ ++
T Consensus       100 ~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A          100 VFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             EEEEETTCTTCCHHHHHHHHH
T ss_pred             EEEEeCCcCcCCHHHHHHHHh
Confidence            999999999999999999 87

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.61  E-value=2.9e-15  Score=121.76  Aligned_cols=195  Identities=15%  Similarity=0.141  Sum_probs=120.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-------------------------cCCcEEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDLKF   55 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-------------------------~~~~v~~   55 (210)
                      +||+|+|++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+..                         ++..+.+
T Consensus        29 ~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~i~~  106 (302)
T 2e3d_A           29 IPKEMLPLVDKPLIQYVVNECIAAG-ITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQ  106 (302)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGGG-HHHHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTCEEEE
T ss_pred             CCceeeEECCeEHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHhcchhhhhhhhhccchhhhhhhhhccccCcceEE
Confidence            4999999999999999999999886 899999999864 445554432                         2444555


Q ss_pred             ecC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC----HH---HHHHHHHHHHhcCCe-EEeeecccc--eE--Ec
Q 028320           56 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVL----SK---DVQKVLMDALRVGAA-VLGVPAKAT--IK--EA  121 (210)
Q Consensus        56 ~~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~----~~---~i~~~i~~~~~~~~~-~~~~~~~~~--~~--~~  121 (210)
                      +..  ..+..+++..|+..+.  .+.++++.||+|+ +    +.   +++++++.+...+++ +.+.++.++  ..  ..
T Consensus       107 ~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~yg~v~~  183 (302)
T 2e3d_A          107 VRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVIL-DEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDC  183 (302)
T ss_dssp             EECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEE-CTTSSCTTTSTHHHHHHHHHHHCCEEEEEEECSCGGGSEEEEC
T ss_pred             eeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccc-cCccccchHHHHHHHHHHHHhcCCcEEEEEEccCCCCccEEEe
Confidence            432  3345788999988875  3678999999998 5    56   899999988765553 333344321  11  11


Q ss_pred             c----CCC---ceeeecCcc-----Ceeeec-CCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC
Q 028320          122 N----SES---FVVRTLDRK-----TLWEMQ-TPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY  185 (210)
Q Consensus       122 ~----~~g---~v~~~~~r~-----~~~~~~-~P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~  185 (210)
                      +    ++|   .+..+.+..     .-+... .-++|+...+ ..+.....   ..+++++....+...| ++..+..+.
T Consensus       184 ~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~  261 (302)
T 2e3d_A          184 KGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKE-TVEAYHMKG  261 (302)
T ss_dssp             TTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHTCCCC----CCCHHHHHHHHHHHS-CEEEEECCS
T ss_pred             cccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHH-HHHHhhCCCCCCceehHHHHHHHHHhC-CEEEEEeCC
Confidence            1    244   444332210     000111 1144555543 33322110   1234444433333345 787777666


Q ss_pred             CCccccChhhHHHHHHH
Q 028320          186 TNIKVTTPDDLLIAERI  202 (210)
Q Consensus       186 ~~~dIdt~~Dl~~a~~~  202 (210)
                      .+.||+||+||..++..
T Consensus       262 ~~~DIgt~~d~~~a~~~  278 (302)
T 2e3d_A          262 KSHDCGNKLGYMQAFVE  278 (302)
T ss_dssp             CEEECSSHHHHHHHHHH
T ss_pred             eEEcCCCHHHHHHHHHH
Confidence            89999999999999843

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.60  E-value=4e-14  Score=115.47  Aligned_cols=201  Identities=14%  Similarity=0.148  Sum_probs=112.6

Q ss_pred             CCccceec-CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC-cEEEec--CCccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-DLKFSL--PGKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i-~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~-~v~~~~--~~~~~~~si~~~l~~~~~   75 (210)
                      .||+|+++ +|+|||+|+++++.++  +++|+|++++...+.+.+.+.+ ++. .+.++.  ...+...++..++..+. 
T Consensus        26 ~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~gt~~al~~a~~~l~-  102 (308)
T 2qh5_A           26 YPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALMSD-  102 (308)
T ss_dssp             CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEEEEEESSCCCHHHHHHHHHHTSC-
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccEEEeCCCCCChHHHHHHHHHHhC-
Confidence            49999999 6999999999999887  8999999998643456676666 665 444432  23345788888888874 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHH---HHhcCC--eEEeeecccc--e--EEccCCCceeeecCccC-----------
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMD---ALRVGA--AVLGVPAKAT--I--KEANSESFVVRTLDRKT-----------  135 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~---~~~~~~--~~~~~~~~~~--~--~~~~~~g~v~~~~~r~~-----------  135 (210)
                      ..+.++++.||+|+++.+.++++++.   +...++  .+.+.+...+  .  ...+++|.+..+.+...           
T Consensus       103 ~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~~~g  182 (308)
T 2qh5_A          103 KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPNGLDVKRFIEKPSLDKAIEFQKSG  182 (308)
T ss_dssp             TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECSSSSBCSEEEESCCHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEECCCCEEEEEEECCChHHHHHHhhcC
Confidence            24578999999999999999999986   334444  2333343221  1  12233455554432110           


Q ss_pred             eeeecC-CcccChHHHHHHHHHHH--------h------cC----CCCC---cHH-H---------HHHhCCCCeEEEec
Q 028320          136 LWEMQT-PQVIKPDLLKKGFELVN--------R------EG----LEVT---DDV-S---------IVEHLKHPVYITEG  183 (210)
Q Consensus       136 ~~~~~~-P~~f~~~~l~~~~~~~~--------~------~~----~~~~---d~~-~---------~~~~~g~~v~~v~~  183 (210)
                      -+...+ -++|+.+.|...+....        .      ..    ++++   .+. .         .+...|.++..++.
T Consensus       183 ~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~  262 (308)
T 2qh5_A          183 GFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVEL  262 (308)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEEC
T ss_pred             CeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEEC
Confidence            112222 24566655433332211        0      00    2222   111 1         01234678888877


Q ss_pred             CCCCccccChhhHHHHHHHhh
Q 028320          184 SYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       184 ~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      +..+.||+|++||..++....
T Consensus       263 ~~~w~digt~~~l~~~~~~~~  283 (308)
T 2qh5_A          263 NAKWSDLGNFNALFEEAANEP  283 (308)
T ss_dssp             CSCCBC---------------
T ss_pred             CCceeCCCCHHHHHHHhhcCc
Confidence            778999999999999887544

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.58  E-value=3.8e-14  Score=112.43  Aligned_cols=195  Identities=11%  Similarity=0.065  Sum_probs=119.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC---CcEEE---------------------e
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKF---------------------S   56 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~---~~v~~---------------------~   56 (210)
                      +||+|+|++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++   ..+.+                     +
T Consensus        23 ~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  100 (259)
T 1tzf_A           23 KPKPMVEIGGKPILWHIMKMYSVHG-IKDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLV  100 (259)
T ss_dssp             CCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTH-HHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEEE
T ss_pred             CCccccEECCEEHHHHHHHHHHHCC-CCEEEEEcccCH-HHHHHHHhhcccccccccccccccceeeeeccccccceeee
Confidence            4999999999999999999999986 899999998875 55666665431   11211                     1


Q ss_pred             c--CCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc--e--EEccCCCceeee
Q 028320           57 L--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT--I--KEANSESFVVRT  130 (210)
Q Consensus        57 ~--~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~--~--~~~~~~g~v~~~  130 (210)
                      .  ...+..+++..|+..+.. .+.++++.||. + ....++++++.+...++.+++.++..+  .  ...+ +|.+..+
T Consensus       101 ~~~~~~gt~~al~~a~~~~~~-~~~~lv~~~D~-~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~g~v~~~-~g~v~~~  176 (259)
T 1tzf_A          101 DTGDSSMTGGRLKRVAEYVKD-DEAFLFTYGDG-V-ADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ-AGQVRSF  176 (259)
T ss_dssp             ECCSSCCHHHHHHHTGGGTTT-SSCEEEEETTE-E-ECCCHHHHHHHHHHHCCSEEEEEECCCCCSEEEEEE-TTEEEEE
T ss_pred             ecccccCcHHHHHHHHHhcCC-CCcEEEEECCE-e-cccCHHHHHHHHHHhCCeEEEEEecCCCCccEEEEc-CCEEEEE
Confidence            1  123457788888888742 46778889998 3 457899999888765553333333221  1  1123 5666544


Q ss_pred             cCc--cCeeeec-CCcccChHHHHHHHHHHHhcCCCC-CcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320          131 LDR--KTLWEMQ-TPQVIKPDLLKKGFELVNREGLEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       131 ~~r--~~~~~~~-~P~~f~~~~l~~~~~~~~~~~~~~-~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      .++  ...+... .-++|+...|. .+.   .....+ ++....+...| ++..+..+..+.||||++||..++..+...
T Consensus       177 ~ekp~~~~~~~~~Giy~~~~~~l~-~l~---~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~  251 (259)
T 1tzf_A          177 QEKPKGDGAMINGGFFVLNPSVID-LID---NDATTWEQEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKG  251 (259)
T ss_dssp             EESCSCCSCCEECCCEEECGGGGG-GCC---STTCCTTTHHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred             EecCCCCCceEEEEEEEeCHHHHH-hhc---ccccccHHHHHHHHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhcC
Confidence            321  1111121 22455554431 111   111122 33322222334 666555556899999999999999988754

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.53  E-value=1.1e-13  Score=117.40  Aligned_cols=200  Identities=12%  Similarity=0.086  Sum_probs=121.7

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC-------cEEEecC------C---ccH
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-------DLKFSLP------G---KER   62 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~-------~v~~~~~------~---~~~   62 (210)
                      +||+|+|++|+ |||+|+++++.+++ +++|+|++++.. +.+.+.+.+ ++.       .+.++..      .   .+.
T Consensus        33 ~pK~llpi~gk~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt  110 (420)
T 3brk_X           33 RAKPAVYFGGKARIIDFALSNALNSG-IRRIGVATQYKA-HSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGT  110 (420)
T ss_dssp             SCGGGSEETTTEETHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHHHHHHSCCCCGGGTCEEEEECCC-------CCCCH
T ss_pred             CcccccccCCCCcHHHHHHHHHHhCC-CCeEEEEeCCCh-HHHHHHHhhhhccccccccCCEEEeCccccccCCccccCC
Confidence            48999999999 99999999999986 899999999875 456665554 442       1333321      1   355


Q ss_pred             HHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----eEEccCCCceeeecCc
Q 028320           63 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLDR  133 (210)
Q Consensus        63 ~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~--~~~----~~~~~~~g~v~~~~~r  133 (210)
                      .+++..|+..+.. +.+.++++.||+ + ....++++++.+...++  .+.+.++  .++    ....+++|.+..+.++
T Consensus       111 ~~al~~a~~~l~~~~~~~~lv~~~D~-~-~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek  188 (420)
T 3brk_X          111 ADAVYQNIDIIEPYAPEYMVILAGDH-I-YKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEK  188 (420)
T ss_dssp             HHHHHTTHHHHHHHCCSEEEEEESSC-E-ECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSBEEEEEES
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecccE-E-EchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCcEEEeEeC
Confidence            7889988888752 347899999999 4 45678999988876554  3444443  222    1222445666544321


Q ss_pred             cC----------eeeecC-CcccChHHHHHHHHHHHh---cCCCC-CcHHHHHHhCCCCeEEEec-----------CCCC
Q 028320          134 KT----------LWEMQT-PQVIKPDLLKKGFELVNR---EGLEV-TDDVSIVEHLKHPVYITEG-----------SYTN  187 (210)
Q Consensus       134 ~~----------~~~~~~-P~~f~~~~l~~~~~~~~~---~~~~~-~d~~~~~~~~g~~v~~v~~-----------~~~~  187 (210)
                      ..          .+...+ -+.|+.+.|...+.....   ...++ ++-...+...| ++.....           +..+
T Consensus       189 p~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~~~  267 (420)
T 3brk_X          189 PADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYW  267 (420)
T ss_dssp             CSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHS-CEEEEEHHHHBCCCTTCSSCCE
T ss_pred             CCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhC-cEEEEEeccccccccccCCCEE
Confidence            10          111111 245666665544432110   01112 23222222334 6665444           5578


Q ss_pred             ccccChhhHHHHHHHhhc
Q 028320          188 IKVTTPDDLLIAERILNL  205 (210)
Q Consensus       188 ~dIdt~~Dl~~a~~~~~~  205 (210)
                      .||||++||..++..+..
T Consensus       268 ~dI~t~~d~~~a~~~ll~  285 (420)
T 3brk_X          268 RDVGTIDAYWQANIDLTD  285 (420)
T ss_dssp             ECCCSHHHHHHHHHHTTS
T ss_pred             EECCCHHHHHHHHHHHhC
Confidence            999999999999987754

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.52  E-value=1.9e-14  Score=112.53  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHH-HhhcCCcEEEecC-C--ccHHHHHHHHHHcccCCC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET-KEKINVDLKFSLP-G--KERQDSVYSGLQEVDFNS   77 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~-~~~~~~~v~~~~~-~--~~~~~si~~~l~~~~~~~   77 (210)
                      ||+|++++|+|||+|+++++.++  +++|+|++ ++. +.+.+. .++++..+.++.. +  .+..+++..|++.++   
T Consensus        36 ~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~-~~~-~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~i~~a~~~~~---  108 (232)
T 2xme_A           36 PKPLVRVGGCEIILRTMKLLSPH--VSEFIIVA-SRY-ADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE---  108 (232)
T ss_dssp             CGGGCEETTEEHHHHHHHHHGGG--EEEEEEEE-STT-HHHHHHHHTTSCCCEEEEECSCGGGCHHHHHHTTGGGCC---
T ss_pred             CcEEeEECCEEHHHHHHHHHHHh--CCEEEEEe-CCh-HHHHHHHHHhcCCcEEEEECCCCCCCcHHHHHHHHHHCC---
Confidence            89999999999999999999877  79999999 554 233333 4555555666543 2  345888999988875   


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHH
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLM  100 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~  100 (210)
                      +.++++.||+|+ +++.++++++
T Consensus       109 ~~~lv~~~D~p~-~~~~~~~l~~  130 (232)
T 2xme_A          109 DRFILTMGDHVY-SQQFIEKAVR  130 (232)
T ss_dssp             SSEEEEETTEEE-CHHHHHHHTT
T ss_pred             CCEEEEcCCccc-CHHHHHHHHh
Confidence            346678899998 9999988876

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.44  E-value=5.6e-12  Score=107.74  Aligned_cols=203  Identities=11%  Similarity=0.016  Sum_probs=126.5

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cC--C-------cEEEec--C-------Cc
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN--V-------DLKFSL--P-------GK   60 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~--~-------~v~~~~--~-------~~   60 (210)
                      .||+|+|++|+ |||+|+++++.+++ +++|+|++++.. +.+.+.+.+ ++  .       .+.++.  +       ..
T Consensus        41 ~pK~llpi~g~~pli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~  118 (451)
T 1yp2_A           41 RAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQ  118 (451)
T ss_dssp             SCGGGCEETTTEETTHHHHHHHHHTT-CCEEEEEESCCC-HHHHHHHHHHCC--------CCEEEEEESCSSTTSCCCCC
T ss_pred             CcceeeEECCcceeHHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHhhhhhcccccccccCcEEEeccccccccccccc
Confidence            48999999999 99999999999885 899999999875 345444432 31  1       122321  1       13


Q ss_pred             cHHHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----eEEccCCCceeeec
Q 028320           61 ERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVRTL  131 (210)
Q Consensus        61 ~~~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~--~~----~~~~~~~g~v~~~~  131 (210)
                      +..++++.++..+.. ..+.++++.||+ +. ...++++++.+...++  .+.+.++.  ++    +...+++|.+..+.
T Consensus       119 Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~~~  196 (451)
T 1yp2_A          119 GTADAVRQYLWLFEEHTVLEYLILAGDH-LY-RMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFA  196 (451)
T ss_dssp             SHHHHHHHTHHHHTTSCCSEEEEECSCE-EC-CCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEE
T ss_pred             CcHHHHHHHHHHHHhcCCCeEEEecCcE-EE-cCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCCCEEEEE
Confidence            457889999888753 247899999999 54 4578999988876554  23334442  11    22234456665443


Q ss_pred             CccC------------------------eeeecC-CcccChHHHHHHHHHHHhcCCCCC-cHHHHHHhCCCCeEEEecCC
Q 028320          132 DRKT------------------------LWEMQT-PQVIKPDLLKKGFELVNREGLEVT-DDVSIVEHLKHPVYITEGSY  185 (210)
Q Consensus       132 ~r~~------------------------~~~~~~-P~~f~~~~l~~~~~~~~~~~~~~~-d~~~~~~~~g~~v~~v~~~~  185 (210)
                      ++..                        .+...+ -+.|+...|...+.........+. +-...+...|.++.....+.
T Consensus       197 ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~~~  276 (451)
T 1yp2_A          197 EKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDG  276 (451)
T ss_dssp             ESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECCS
T ss_pred             ECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcCCceEEEEeCC
Confidence            2110                        111111 245676666555543211111222 32222334567888777666


Q ss_pred             CCccccChhhHHHHHHHhhccc
Q 028320          186 TNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       186 ~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      .+.+|+|++||..++..+..+.
T Consensus       277 ~w~digt~~~l~~a~~~l~~~~  298 (451)
T 1yp2_A          277 YWEDIGTIEAFYNANLGITKKP  298 (451)
T ss_dssp             CCEECSSHHHHHHHHHGGGCSS
T ss_pred             EEEECCCHHHHHHHHHHHhccc
Confidence            8999999999999998876543

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.43  E-value=2.3e-12  Score=106.28  Aligned_cols=100  Identities=18%  Similarity=0.304  Sum_probs=73.5

Q ss_pred             CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC-CcEEEecCCccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~-~~v~~~~~~~~~~~si~~~l~~~~~~~d   78 (210)
                      .||+|++++| +|||+|+++++..+..+++|+|+|+++....+.+.+...+ ..+..-+.+.+...++..|...+. ..+
T Consensus        23 ~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~~~~gta~ai~~a~~~~~-~~~  101 (336)
T 2x65_A           23 TPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLAD-DDE  101 (336)
T ss_dssp             CBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEESSCCCHHHHHHHHHTTSC-TTC
T ss_pred             CCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCCCCCCcHHHHHHHHHhhC-CCC
Confidence            4999999999 9999999999998755899999999874344555554432 133222333445777877776653 347


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMD  101 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~  101 (210)
                      .++++.||+|+.+++.+..+++.
T Consensus       102 ~~lvl~~D~~~~~~~~~~~~l~~  124 (336)
T 2x65_A          102 PVLVLPADHRIPDTKKFWKTVKK  124 (336)
T ss_dssp             EEEEEETTCBCCCHHHHHHHHHH
T ss_pred             EEEEEcCCceeccHHHHHHHHHH
Confidence            89999999999999887777665

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.30  E-value=6e-12  Score=103.85  Aligned_cols=196  Identities=13%  Similarity=0.120  Sum_probs=113.1

Q ss_pred             CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccC--C
Q 028320            1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF--N   76 (210)
Q Consensus         1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~--~   76 (210)
                      .||+|++++| +|||+|+++++..+..+++|+|+|+++....+.+.+..  ..+ +.. .+.+...++..+.. +..  .
T Consensus        24 ~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--~~~-i~e~~~~gta~ai~~a~~-l~~~~~   99 (337)
T 2cu2_A           24 RPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--IRL-LLEPLGRDTAGAVLLGVA-EALKEG   99 (337)
T ss_dssp             BCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--SEE-EEESSCCHHHHHHHHHHH-HHHHHT
T ss_pred             CCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc--Cce-EecCCCCCcHHHHHHHHH-HhccCC
Confidence            3999999999 99999999999988458999999988643333332221  122 222 23344666766665 421  2


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeE--Eeeecccc----eEEccCC----CceeeecCc----------
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALR---VGAAV--LGVPAKAT----IKEANSE----SFVVRTLDR----------  133 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~---~~~~~--~~~~~~~~----~~~~~~~----g~v~~~~~r----------  133 (210)
                      .+.++++.||+|+.+++.+..+++.+.+   .++.+  .+.|....    ....+++    +.+.++.+.          
T Consensus       100 ~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~  179 (337)
T 2cu2_A          100 AERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI  179 (337)
T ss_dssp             CSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH
T ss_pred             CCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEECCcccccCeEEEEEeCCChHHHHHHh
Confidence            5789999999999999998888776522   24422  22333211    1111222    345444321          


Q ss_pred             -cCeeeecC-CcccChHHHHHHHHHHHhc----------CCCCCcHHH---------HHHhCCCCeEEEecCCCCccccC
Q 028320          134 -KTLWEMQT-PQVIKPDLLKKGFELVNRE----------GLEVTDDVS---------IVEHLKHPVYITEGSYTNIKVTT  192 (210)
Q Consensus       134 -~~~~~~~~-P~~f~~~~l~~~~~~~~~~----------~~~~~d~~~---------~~~~~g~~v~~v~~~~~~~dIdt  192 (210)
                       ++ +..++ -++|+.+.|...++.....          +..+.+...         .+.+.+.++.+++.+..+.||+|
T Consensus       180 ~~g-~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt  258 (337)
T 2cu2_A          180 RKG-YVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGN  258 (337)
T ss_dssp             HTT-CEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCS
T ss_pred             hcC-CEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCC
Confidence             11 22222 2566766654433322100          000000011         01223567888888888999999


Q ss_pred             hhhHHHHHH
Q 028320          193 PDDLLIAER  201 (210)
Q Consensus       193 ~~Dl~~a~~  201 (210)
                      +++|..+..
T Consensus       259 ~~~l~~~~~  267 (337)
T 2cu2_A          259 WRALERVFS  267 (337)
T ss_dssp             TTHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999988754

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=99.26  E-value=1.1e-10  Score=89.95  Aligned_cols=81  Identities=12%  Similarity=0.121  Sum_probs=62.6

Q ss_pred             cCCeehHHHHHHHHhcCCCCCeE-EEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCC
Q 028320            8 LLGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA   86 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~~~i-vVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d   86 (210)
                      ..|+|||+|+++++.+++ ++.+ +|+++++...   +.   ++..  ++.+..+..+++..|++.+   .+.++++.||
T Consensus        30 ~l~~~ll~~vl~~l~~~~-~~~v~vvv~~~~~~~---~~---~~~~--~v~~~~gl~~sl~~a~~~~---~~~vlvi~~D   97 (211)
T 2i5e_A           30 EFVELMLNQVISSLKGAG-IEQVDILSPSVYGLE---EM---TEAR--VLLDEKDLNEALNRYLKEA---EEPVLIVMAD   97 (211)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CSEEEEEESSCTTCS---SC---CSSE--EEECCSCHHHHHHHHHHHC---CSCEEEECSC
T ss_pred             HHHHHHHHHHHHHHHHcC-CceEEEEEcCcHHHH---hh---cCCE--EEECCCCHHHHHHHHHHhc---CCCEEEEcCC
Confidence            567999999999999885 7899 9988876421   11   3433  3333345578889898876   4679999999


Q ss_pred             CCCCCHHHHHHHHH
Q 028320           87 RPLVLSKDVQKVLM  100 (210)
Q Consensus        87 ~Pli~~~~i~~~i~  100 (210)
                      +|++++++|+++++
T Consensus        98 ~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           98 LPLLSPEHIKEISS  111 (211)
T ss_dssp             CTTCCHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHc
Confidence            99999999999987

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=98.99  E-value=1.1e-08  Score=80.36  Aligned_cols=92  Identities=14%  Similarity=0.047  Sum_probs=66.7

Q ss_pred             eehHHHHHHHHhcCCCCCeEEEEeCCCChHHH--HHHHhhcCCcEEEe-cCCccHHHHHHHHHHcc-cCCCCEEEEEeCC
Q 028320           11 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIF--EETKEKINVDLKFS-LPGKERQDSVYSGLQEV-DFNSELVCIHDSA   86 (210)
Q Consensus        11 kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i--~~~~~~~~~~v~~~-~~~~~~~~si~~~l~~~-~~~~d~vl~~~~d   86 (210)
                      ++|+.++++++.+++ .+.++|++++.....+  ..+.   +..+.+. ..+.+..+++.+|+..+ ....+.|+++.+|
T Consensus        37 ~~ll~~tl~~~~~~~-~~~vvvvt~~~~~~~~~~~~~~---~~~~~~~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD  112 (242)
T 3cgx_A           37 RHFVQDMLQGLARLH-ADLHICYVPGDADLPEKFKAWL---GPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSD  112 (242)
T ss_dssp             HHHHHHHHHHHTTSS-SEEEEEECCCCTTHHHHHHHHH---CTTSEEEECCSSSHHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             HHHHHHHHHHHHhCC-CCEEEEEcCCchhhhhhhhhhc---cCCcEEecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            589999999999885 6777777776553322  3333   2223333 34456788899999876 3346789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcC
Q 028320           87 RPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        87 ~Pli~~~~i~~~i~~~~~~~  106 (210)
                      +|++++++|+++++.+...+
T Consensus       113 ~P~L~~~~l~~a~~~l~~~d  132 (242)
T 3cgx_A          113 IPDYPCELVQKALNDLQHYD  132 (242)
T ss_dssp             CTTCCHHHHHHHHHHTTTCS
T ss_pred             CCCCCHHHHHHHHHHhccCC
Confidence            99999999999998776544

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00086  Score=57.62  Aligned_cols=114  Identities=13%  Similarity=0.144  Sum_probs=70.3

Q ss_pred             CCccceecC-CeehHHHHHHHHhcCC---CCC-eEEEEeCCCChHHHHHHHhhc---CCcEEEe----------------
Q 028320            1 MPKQYLPLL-GQPIALYSFYTFSRMV---EVK-EIVVVCDPSYSDIFEETKEKI---NVDLKFS----------------   56 (210)
Q Consensus         1 ~~K~l~~i~-gkpli~~~i~~~~~~~---~~~-~ivVv~~~~~~~~i~~~~~~~---~~~v~~~----------------   56 (210)
                      .||.++++. |||||+|+++++.+..   .+. .++|+++....+.+++.++++   |..+.++                
T Consensus       110 ~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~~i~~f~Q~~~P~i~~d~~~~l  189 (488)
T 2i5k_A          110 GPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPV  189 (488)
T ss_dssp             SBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSCEEEEECCCCEECEETTTCCBS
T ss_pred             CCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCceEEEEEeCccceEccccceee
Confidence            489999998 9999999999987662   122 467777744446777777664   3344433                


Q ss_pred             ------------cCCccHHHHHHHH---HHccc-CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccc
Q 028320           57 ------------LPGKERQDSVYSG---LQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKA  116 (210)
Q Consensus        57 ------------~~~~~~~~si~~~---l~~~~-~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~  116 (210)
                                  +.|+...-....+   ++.+. ...++++++.+|. |+...++. ++..+...++  ++.+++..+
T Consensus       190 ~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~-~L~~~~~~~a~~t~~v~~~~~  265 (488)
T 2i5k_A          190 PTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLK-ILNHMIETGAEYIMELTDKTR  265 (488)
T ss_dssp             CSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHH-HHHHHHHSCCSEEEEEEECCG
T ss_pred             ccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHH-HHHHHHhcCCcEEEEEEEecC
Confidence                        2233222221122   45542 2357999999999 98877775 4455545544  444555543

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=95.75  E-value=0.056  Score=46.56  Aligned_cols=47  Identities=9%  Similarity=-0.031  Sum_probs=32.5

Q ss_pred             CCccceec---CCeehHHHHHHHHhc----C----C---CCCeEEEEeCCCChHHHHHHHhh
Q 028320            1 MPKQYLPL---LGQPIALYSFYTFSR----M----V---EVKEIVVVCDPSYSDIFEETKEK   48 (210)
Q Consensus         1 ~~K~l~~i---~gkpli~~~i~~~~~----~----~---~~~~ivVv~~~~~~~~i~~~~~~   48 (210)
                      .||.++|+   .|+|+|+|.++++.+    +    +   .+..+++ +.....+.+.+..++
T Consensus       120 ~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vIm-tS~~t~e~t~~~f~~  180 (505)
T 1jv1_A          120 YPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIM-TSGRTMESTKEFFTK  180 (505)
T ss_dssp             SCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEE-ECTTTHHHHHHHHHH
T ss_pred             CCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEE-ecCCCHHHHHHHHHh
Confidence            49999999   899999999999765    1    2   2444444 444433566676654

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=94.89  E-value=0.29  Score=37.31  Aligned_cols=94  Identities=7%  Similarity=0.051  Sum_probs=65.0

Q ss_pred             cCCeehHHHHHHHHhcCCCCC-eEEEEeCCCChHHHHHHHhhc--CCcEEEecCC----------ccHHHHHHHHHHccc
Q 028320            8 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKI--NVDLKFSLPG----------KERQDSVYSGLQEVD   74 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~~-~ivVv~~~~~~~~i~~~~~~~--~~~v~~~~~~----------~~~~~si~~~l~~~~   74 (210)
                      .++...|..+++++.+...-+ +|+||-+... +...++++.+  ...+.++...          .+...+.-.|++...
T Consensus        10 yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~-d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~   88 (255)
T 1qg8_A           10 YNKSDYVAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE   88 (255)
T ss_dssp             SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHhccCCceEEEEEECCCC-chHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHcC
Confidence            466788999999987654323 5666655443 5556666665  3455555432          334556667888764


Q ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           75 FNSELVCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                        .++++++++|.-+ .++.++.+++.+...
T Consensus        89 --g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~  116 (255)
T 1qg8_A           89 --GEYITYATDDNIY-MPDRLLKMVRELDTH  116 (255)
T ss_dssp             --CSEEEEEETTEEE-CTTHHHHHHHHHHHC
T ss_pred             --CCEEEEeCCCCcc-ChHHHHHHHHHHHhC
Confidence              7999999999764 889999999988765

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=94.68  E-value=0.39  Score=36.11  Aligned_cols=96  Identities=17%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             cCCeehHHHHHHHHhcCCCCC-eEEEEeCCCC--h-HHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCEEEE
Q 028320            8 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSY--S-DIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCI   82 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~~-~ivVv~~~~~--~-~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~vl~   82 (210)
                      .++...|..+++++.+...-+ +|+||-+...  . +.+++..+++. .+.++.. ..+...+.-.|++...  .++|++
T Consensus        14 yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~-~i~~i~~~n~G~~~a~N~g~~~a~--g~~i~~   90 (240)
T 3bcv_A           14 YNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYP-NIKVIHKKNAGLGMACNSGLDVAT--GEYVAF   90 (240)
T ss_dssp             SSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCS-SEEEEECCCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred             CCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCC-CEEEEECCCCChHHHHHHHHHHcC--CCEEEE
Confidence            367789999999987643222 5666654322  1 12333333332 3444433 2334666677888875  799999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           83 HDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        83 ~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +++|. .+.++.++.+++.+...+.
T Consensus        91 lD~Dd-~~~~~~l~~l~~~~~~~~~  114 (240)
T 3bcv_A           91 CDSDD-YVDSDMYMTMYNVAQKYTC  114 (240)
T ss_dssp             CCTTC-CCCTTHHHHHHHHHHHHTC
T ss_pred             ECCCC-cCCHHHHHHHHHHHHhcCC
Confidence            99997 5699999999998876443

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=94.55  E-value=0.32  Score=39.09  Aligned_cols=94  Identities=16%  Similarity=0.039  Sum_probs=65.6

Q ss_pred             cCCeehHHHHHHHHhcCC--CCCeEEEEeCCCChHHHHHHHhhcCCcEEE-------ecCCccHHHHHHHHHHcccCCCC
Q 028320            8 LLGQPIALYSFYTFSRMV--EVKEIVVVCDPSYSDIFEETKEKINVDLKF-------SLPGKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~--~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-------~~~~~~~~~si~~~l~~~~~~~d   78 (210)
                      .|+...|..+++++.+..  ...+|+||-+... +...++++.++..+..       .....+...+...|++...  .+
T Consensus        57 yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd  133 (329)
T 3ckj_A           57 LDEEDTIGSVIDSISPLVDGLVDELIVLDSGST-DDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASR--GD  133 (329)
T ss_dssp             SSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHHHHHHHHCC--CS
T ss_pred             CCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC-chHHHHHHHhhhhhccceeeeccCCCCCCHHHHHHHHHHhCC--CC
Confidence            467788999999987643  2357777754432 3456677777654321       1222334677778888765  79


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      +|+++++|.-.+.++.+..+++.+..
T Consensus       134 ~i~~lD~D~~~~~p~~l~~l~~~l~~  159 (329)
T 3ckj_A          134 IVVFVDSDLINPHPMFVPWLVGPLLT  159 (329)
T ss_dssp             EEEECCTTEESCCTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCcChHHHHHHHHHHHh
Confidence            99999999987899999999988654

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=94.40  E-value=0.076  Score=45.69  Aligned_cols=47  Identities=9%  Similarity=0.031  Sum_probs=34.2

Q ss_pred             CCccceecC-CeehHHHHHHHHhcCCCC----CeEEEEeCCCChHHHHHHHh
Q 028320            1 MPKQYLPLL-GQPIALYSFYTFSRMVEV----KEIVVVCDPSYSDIFEETKE   47 (210)
Q Consensus         1 ~~K~l~~i~-gkpli~~~i~~~~~~~~~----~~ivVv~~~~~~~~i~~~~~   47 (210)
                      .||+++|++ |||+|++.++++.+.+.-    =.+++.|....-+.+.+..+
T Consensus        93 ~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~  144 (505)
T 2oeg_A           93 DAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLK  144 (505)
T ss_dssp             SCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHh
Confidence            499999999 999999999999876311    15666666553355666665

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=93.69  E-value=0.79  Score=38.22  Aligned_cols=110  Identities=11%  Similarity=0.114  Sum_probs=65.9

Q ss_pred             CCccceec---CCeehHHHHHHHHhc------------CCCCCeEEEEeCCCChHHHHHHHhhc---CCc---EE-----
Q 028320            1 MPKQYLPL---LGQPIALYSFYTFSR------------MVEVKEIVVVCDPSYSDIFEETKEKI---NVD---LK-----   54 (210)
Q Consensus         1 ~~K~l~~i---~gkpli~~~i~~~~~------------~~~~~~ivVv~~~~~~~~i~~~~~~~---~~~---v~-----   54 (210)
                      .||.+.++   .|||++++.++++++            ...+. .+|.|+....+.+.+..+++   |..   +.     
T Consensus        53 ~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip-~~IMtS~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~  131 (405)
T 3oc9_A           53 HPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIH-WFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQG  131 (405)
T ss_dssp             SBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCE-EEEEECTTTHHHHHHHHHHTGGGGSCTTSEEEEECC
T ss_pred             CCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCC-EEEEeCCccHHHHHHHHHhCcccCCCccceEEEeeC
Confidence            48999999   999999999998854            11234 55555655446777877653   331   22     


Q ss_pred             --------------------EecCCccHHHHHHHHH------Hccc-CCCCEEEEEeCCCCCC---CHHHHHHHHHHHHh
Q 028320           55 --------------------FSLPGKERQDSVYSGL------QEVD-FNSELVCIHDSARPLV---LSKDVQKVLMDALR  104 (210)
Q Consensus        55 --------------------~~~~~~~~~~si~~~l------~~~~-~~~d~vl~~~~d~Pli---~~~~i~~~i~~~~~  104 (210)
                                          +.+.|...   +..+|      +.+. ...+++++...|.+|.   ++..+..+++  +.
T Consensus       132 ~~P~i~~dg~i~l~~~~~i~~~P~GhGg---i~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~--~~  206 (405)
T 3oc9_A          132 MLPVVDFNGKILYEKKDKPYMAPNGHGG---LFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDL--LQ  206 (405)
T ss_dssp             EEECBCTTSCBCEEETTEECEEECCGGG---HHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHH--TT
T ss_pred             ceeEEecCCCeecCCCCccccccCCChH---HHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHH--cC
Confidence                                23334332   33333      3232 1347999999999988   5666555543  12


Q ss_pred             cCCeEEeeeccc
Q 028320          105 VGAAVLGVPAKA  116 (210)
Q Consensus       105 ~~~~~~~~~~~~  116 (210)
                      .+.++-+++..+
T Consensus       207 ~d~~~kvv~k~~  218 (405)
T 3oc9_A          207 SEICIKIVKKGF  218 (405)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CCEEEEEEECCC
Confidence            334455555443

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=93.48  E-value=0.6  Score=38.67  Aligned_cols=95  Identities=15%  Similarity=0.011  Sum_probs=66.2

Q ss_pred             cCCeehHHHHHHHHhc----CCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-------cCCccHHHHHHHHHHcccCC
Q 028320            8 LLGQPIALYSFYTFSR----MVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-------LPGKERQDSVYSGLQEVDFN   76 (210)
Q Consensus         8 i~gkpli~~~i~~~~~----~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-------~~~~~~~~si~~~l~~~~~~   76 (210)
                      .|....|..+++++.+    .+...+|+||-+... +...++++.++..+...       .+..+...++..|++...  
T Consensus       103 yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~n~G~~~A~--  179 (387)
T 3f1y_A          103 RNVADTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVTR--  179 (387)
T ss_dssp             SSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHHHHHTTTCC--
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhcccceeEecCCccCCHHHHHHHHHHhcC--
Confidence            3666778888888754    232357777755433 44567777776554221       122344677888888764  


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      .|+|+++++|.=..+++.+..+++.+...
T Consensus       180 gd~i~~lDaD~~~~~p~~L~~l~~~l~~~  208 (387)
T 3f1y_A          180 GDLVLYIDADTRDFRPQLAYGVLGPVLEV  208 (387)
T ss_dssp             SSEEEECCTTCSSCCTHHHHTTHHHHHHS
T ss_pred             CCEEEEEcCCCCcCCHHHHHHHHHHHHHC
Confidence            79999999999878999999999988654

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=91.98  E-value=0.73  Score=38.83  Aligned_cols=96  Identities=14%  Similarity=0.039  Sum_probs=64.4

Q ss_pred             CCe-ehHHHHHHHHhcCCCCC---eEEEEeCCCC---h-HHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            9 LGQ-PIALYSFYTFSRMVEVK---EIVVVCDPSY---S-DIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         9 ~gk-pli~~~i~~~~~~~~~~---~ivVv~~~~~---~-~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      ++. ..|..+++++.+...-.   +|+||-+...   . +.+++++++++..+.++..  ..+...+.-.|++...  .+
T Consensus        39 N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--gd  116 (472)
T 1xhb_A           39 NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR--GQ  116 (472)
T ss_dssp             SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC--SS
T ss_pred             CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhcc--CC
Confidence            555 68999999987654323   7777754332   1 2344444444434565543  2344666777888865  79


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +++++++|.= ++++.++.+++.+.....
T Consensus       117 ~i~flD~D~~-~~p~~L~~ll~~~~~~~~  144 (472)
T 1xhb_A          117 VITFLDAHCE-CTAGWLEPLLARIKHDRR  144 (472)
T ss_dssp             EEEEEESSEE-ECTTCHHHHHHHHHHCTT
T ss_pred             eEEEECCCeE-eCccHHHHHHHHHHhCCC
Confidence            9999999975 789999999998876554

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=91.53  E-value=1.3  Score=40.29  Aligned_cols=94  Identities=10%  Similarity=0.095  Sum_probs=61.6

Q ss_pred             CCee-hHHHHHHHHhcCCCCC---eEEEEeCCCC------------------hHHHHHHHhhcCCcEEEecCC-ccHHHH
Q 028320            9 LGQP-IALYSFYTFSRMVEVK---EIVVVCDPSY------------------SDIFEETKEKINVDLKFSLPG-KERQDS   65 (210)
Q Consensus         9 ~gkp-li~~~i~~~~~~~~~~---~ivVv~~~~~------------------~~~i~~~~~~~~~~v~~~~~~-~~~~~s   65 (210)
                      |+.+ ++..+++++.+...-+   +|+|+.+...                  ...+++.+++++..+...... .....+
T Consensus       150 Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~~~~~GKa~a  229 (802)
T 4hg6_A          150 NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEHAKAGN  229 (802)
T ss_dssp             TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECSSCCSHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEecCCCCcchHH
Confidence            4443 5699999997765433   5777655421                  112344555666544332222 234666


Q ss_pred             HHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           66 VYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        66 i~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      +..|++...  .|+|+++|+|. .+.++.+++++..+.+.
T Consensus       230 lN~gl~~a~--gd~Il~lDaD~-~~~pd~L~~lv~~~~~d  266 (802)
T 4hg6_A          230 MSAALERLK--GELVVVFDADH-VPSRDFLARTVGYFVED  266 (802)
T ss_dssp             HHHHHHHCC--CSEEEECCTTE-EECTTHHHHHHHHHHHS
T ss_pred             HHHHHHhcC--CCEEEEECCCC-CcChHHHHHHHHHHhcC
Confidence            778888875  79999999999 56899999999998654

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=89.93  E-value=1.3  Score=37.67  Aligned_cols=96  Identities=14%  Similarity=0.034  Sum_probs=62.6

Q ss_pred             CCee-hHHHHHHHHhcCCCCC---eEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCCEEEE
Q 028320            9 LGQP-IALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCI   82 (210)
Q Consensus         9 ~gkp-li~~~i~~~~~~~~~~---~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl~   82 (210)
                      ++.. .|..+++++.+...-.   +|+||-+......+...++.+. .+.++..  ..+...+...|++...  .|+|++
T Consensus        76 N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~--gd~i~f  152 (501)
T 2ffu_A           76 NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE-KVRVLRNDRREGLMRSRVRGADAAQ--AKVLTF  152 (501)
T ss_dssp             SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT-TEEEEECSSCCHHHHHHHHHHHHCC--SSEEEE
T ss_pred             cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC-CEEEEECCCCcCHHHHHHHHHHhcC--CCEEEE
Confidence            4444 7899999876543322   7777754332123344444443 4555542  2334666777888875  799999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320           83 HDSARPLVLSKDVQKVLMDALRVGAA  108 (210)
Q Consensus        83 ~~~d~Pli~~~~i~~~i~~~~~~~~~  108 (210)
                      +++|.- ++++.+..+++.+......
T Consensus       153 lD~D~~-~~p~~L~~ll~~~~~~~~~  177 (501)
T 2ffu_A          153 LDSHCE-CNEHWLEPLLERVAEDRTR  177 (501)
T ss_dssp             CCSSEE-ECTTCHHHHHHHHHHCTTE
T ss_pred             ECCCcc-cCccHHHHHHHHHHhCCCe
Confidence            999985 5899999999988776543

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=88.01  E-value=1.5  Score=38.89  Aligned_cols=98  Identities=7%  Similarity=-0.013  Sum_probs=63.7

Q ss_pred             cCCeehHHHHHHHHhcCC----CCCeEEEEeCCCC----hHHHHHHHhhcCCcEEEecCC-ccHHHHHHHHHHcccC--C
Q 028320            8 LLGQPIALYSFYTFSRMV----EVKEIVVVCDPSY----SDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDF--N   76 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~----~~~~ivVv~~~~~----~~~i~~~~~~~~~~v~~~~~~-~~~~~si~~~l~~~~~--~   76 (210)
                      .|+...|..+++++.+..    ...+|+||=+...    ...+.+.++..+..+.++... .+...+.-.|++.+..  +
T Consensus       189 YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~N~G~a~a~N~Gl~~A~g~~~  268 (657)
T 4fix_A          189 FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQPNLGGSGGYSRVMYEALKNTD  268 (657)
T ss_dssp             SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            578889999999987643    2346777644331    123445554444456666543 2224444556666532  4


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRVG  106 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~  106 (210)
                      +|+|++++.|. .+.++.++.+++.+....
T Consensus       269 ~dyIlfLD~D~-~~~pd~L~~ll~~l~~~~  297 (657)
T 4fix_A          269 CQQILFMDDDI-RLEPDSILRVLAMHRFAK  297 (657)
T ss_dssp             CSEEEEECSSE-EECTHHHHHHHHHHHHBS
T ss_pred             CCEEEEECCCC-ccChhHHHHHHHHHHhCC
Confidence            79999999998 568999999999887653

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=87.83  E-value=5.1  Score=33.24  Aligned_cols=93  Identities=13%  Similarity=-0.012  Sum_probs=56.2

Q ss_pred             ecCCeehHHHHHHHHh---cCCCCCeEEEEeCCCChHHHHHHHh--------hcCCcEEE-e-c--C--CccHHHHHHHH
Q 028320            7 PLLGQPIALYSFYTFS---RMVEVKEIVVVCDPSYSDIFEETKE--------KINVDLKF-S-L--P--GKERQDSVYSG   69 (210)
Q Consensus         7 ~i~gkpli~~~i~~~~---~~~~~~~ivVv~~~~~~~~i~~~~~--------~~~~~v~~-~-~--~--~~~~~~si~~~   69 (210)
                      |.++.. |..+++.+.   ..+. -+|+||=| ...|.+.++++        ..++.+.. . .  +  ..+.+.++..|
T Consensus         7 P~~eE~-I~~vl~~l~~~~~~~~-~EIIVVDD-GStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G   83 (397)
T 2bo4_A            7 PFKHEH-PEVLLHNVRVAAAHPR-VHEVLCIG-YERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTA   83 (397)
T ss_dssp             ECCSSC-HHHHHHHHHHHHHSTT-CCEEEEEE-SSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHH
T ss_pred             eCCccC-HHHHHHHHHHhccCCC-eEEEEEEC-cCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHH
Confidence            334433 455665543   2222 35655533 22234455555        44555533 2 2  2  24558889999


Q ss_pred             H----HcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           70 L----QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        70 l----~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      +    ...  ..|+|+++|||.=-.+|+.+.++++...+
T Consensus        84 ~~~Al~~a--~gd~vv~mDADlq~~~P~~i~~Ll~~l~~  120 (397)
T 2bo4_A           84 LRYFLEET--QWERIHFYDADITSFGPDWITKAEEAADF  120 (397)
T ss_dssp             HHHHHHHC--CCSEEEECCTTCSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHhC--CCCEEEEEcCCCCCCCHHHHHHHHHHHHc
Confidence            9    554  37999999999755789999999988754

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=86.97  E-value=1.7  Score=37.83  Aligned_cols=95  Identities=14%  Similarity=0.021  Sum_probs=62.2

Q ss_pred             CCe-ehHHHHHHHHhcCCCCC---eEEEEeCCCC----hHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320            9 LGQ-PIALYSFYTFSRMVEVK---EIVVVCDPSY----SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         9 ~gk-pli~~~i~~~~~~~~~~---~ivVv~~~~~----~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d   78 (210)
                      +.. ..|..+++++.+...-.   +|+||-+...    .+.++++++++. .+.++..  ..+...+.-.|++...  .|
T Consensus       122 Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~--gd  198 (570)
T 2d7i_A          122 NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVAT--GD  198 (570)
T ss_dssp             SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST-TEEEEECSSCCCHHHHHHHHHHHCC--SS
T ss_pred             CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC-eEEEEECCCCCCHHHHHHHHHHhcC--CC
Confidence            444 58889999886643323   6777754332    122344444442 4555543  2344667777888865  79


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +++++++|.=+ +++.++.+++.+.....
T Consensus       199 ~i~fLD~D~~~-~p~~L~~ll~~l~~~~~  226 (570)
T 2d7i_A          199 VITFLDSHCEA-NVNWLPPLLDRIARNRK  226 (570)
T ss_dssp             EEEECCSSEEE-CTTCSHHHHHHHHHCTT
T ss_pred             EEEEEcCCccc-cccHHHHHHHHHHhCCC
Confidence            99999999866 89999999998876543

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=86.78  E-value=3.5  Score=35.95  Aligned_cols=96  Identities=17%  Similarity=0.083  Sum_probs=63.7

Q ss_pred             cCCeehHHHHHHHHhcCCC--CCeEEEEeCCCChHHHHHHHhhcC--CcEEEec--C-CccHHHHHHHHHHcccCCCCEE
Q 028320            8 LLGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEETKEKIN--VDLKFSL--P-GKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~--~~~ivVv~~~~~~~~i~~~~~~~~--~~v~~~~--~-~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .+....|..+++++.+...  --+|+||-+... +...+.++.+.  ..+.++.  + +.+...+.-.|++...  .++|
T Consensus       102 ~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g~~~a~--g~~v  178 (625)
T 2z86_A          102 YNRAKILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAK--YNYV  178 (625)
T ss_dssp             SSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHHHHHCC--SSEE
T ss_pred             CCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHHHHhCC--cCEE
Confidence            3666789999999876531  245666654332 33456666553  2344332  2 2224566677888764  7999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +++++|.=+ +++.+..++..+...+.
T Consensus       179 ~~lD~D~~~-~~~~l~~~~~~~~~~~~  204 (625)
T 2z86_A          179 AILDCDMAP-NPLWVQSYMELLAVDDN  204 (625)
T ss_dssp             EEECTTEEE-CTTHHHHHHHHHHHCTT
T ss_pred             EEECCCCCC-CHHHHHHHHHHHhcCCc
Confidence            999999876 89999999998876554

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=85.22  E-value=0.92  Score=38.82  Aligned_cols=47  Identities=6%  Similarity=0.003  Sum_probs=33.7

Q ss_pred             CCccceecC---CeehHHHHHHHHhcC--------C-----CCCeEEEEeCCCChHHHHHHHhh
Q 028320            1 MPKQYLPLL---GQPIALYSFYTFSRM--------V-----EVKEIVVVCDPSYSDIFEETKEK   48 (210)
Q Consensus         1 ~~K~l~~i~---gkpli~~~i~~~~~~--------~-----~~~~ivVv~~~~~~~~i~~~~~~   48 (210)
                      .||.+++++   |||+|++.++++.+.        +     .+..++. |.....+.+.+.+++
T Consensus       121 ~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~Im-tS~~t~~~t~~~~~~  183 (486)
T 2yqc_A          121 APKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIM-TSGPTRNATESFFIE  183 (486)
T ss_dssp             SBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEE-ECGGGHHHHHHHHHH
T ss_pred             CCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEE-ECCCCHHHHHHHHhh
Confidence            489999999   999999999998865        2     1344444 444433567777764

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=83.60  E-value=4.8  Score=35.03  Aligned_cols=94  Identities=11%  Similarity=-0.019  Sum_probs=60.3

Q ss_pred             cCCeehHHHHHHHHhcCCCCC-eEEEEeCCCChHHHHHHHhhc---CCcEEEec-CCccHHHHHHHHHHcccCCCCEEEE
Q 028320            8 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKI---NVDLKFSL-PGKERQDSVYSGLQEVDFNSELVCI   82 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~~-~ivVv~~~~~~~~i~~~~~~~---~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~vl~   82 (210)
                      .++...|..+++++......+ +|+||-+... +...++++++   ...+.++. ...+...+.-.|++...  .|++++
T Consensus       384 yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~-d~t~~~~~~~~~~~~~i~~~~~~n~G~~~a~n~g~~~a~--g~~i~~  460 (625)
T 2z86_A          384 YNCSKYIVRCVESALNQTITDLEVCICDDGST-DDTLRILQEHYANHPRVRFISQKNKGIGSASNTAVRLCR--GFYIGQ  460 (625)
T ss_dssp             SSCTTTHHHHHHHHHSSSCCSEEEEEEEESCS-SSHHHHHHHHHTTCTTEEEEEECCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred             CCCHHHHHHHHHHHHhCcCCCeEEEEEECcCC-hhHHHHHHHHHhhCCcEEEEeCCCCCHHHHHHHHHHhcC--CCEEEE
Confidence            477789999999987644333 5666543322 2233334332   12344432 22334666777888765  799999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhc
Q 028320           83 HDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        83 ~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                      +++|-= +.++.++.+++.+...
T Consensus       461 ld~D~~-~~~~~l~~~~~~~~~~  482 (625)
T 2z86_A          461 LDSDDF-LEPDAVELCLDEFRKD  482 (625)
T ss_dssp             CCTTCE-ECTTHHHHHHHHHHHC
T ss_pred             ECCCcc-cChhHHHHHHHHHHhC
Confidence            999974 5999999999888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	4e-38
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	5e-30
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	6e-30
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	3e-26
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	8e-22
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	7e-05
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	0.001

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score =  129 bits (324), Expect = 4e-38
 Identities = 168/204 (82%), Positives = 189/204 (92%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL+F++PGK
Sbjct: 22  MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGK 81

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D   VGAAVLGVPAKATIKE
Sbjct: 82  ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE 141

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
            NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV  EGLEVTDDVSIVE+LKHPVY+
Sbjct: 142 VNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYV 201

Query: 181 TEGSYTNIKVTTPDDLLIAERILN 204
           ++GSYTNIKVTTPDDLL+AERIL+
Sbjct: 202 SQGSYTNIKVTTPDDLLLAERILS 225

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (270), Expect = 5e-30
 Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 2/205 (0%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
            PKQYL +  Q I  +S +       VK +V+   P  S   +      +  +     G 
Sbjct: 21  CPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPL-ANHPQITVVDGGD 79

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
           ER DSV +GL+       ++    +   L      + + +        +L  P + T+K 
Sbjct: 80  ERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKR 139

Query: 121 ANSE-SFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVY 179
           A    + +  T+DR  LW   TPQ    +LL         EG  +TD+ S +E+      
Sbjct: 140 AEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQ 199

Query: 180 ITEGSYTNIKVTTPDDLLIAERILN 204
           + EG   NIKVT P+DL +AE  L 
Sbjct: 200 LVEGRADNIKVTRPEDLALAEFYLT 224

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score =  108 bits (270), Expect = 6e-30
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 8/209 (3%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
            PKQY+ +  + +  +    F R   V   VVV  P      ++ +        +   G+
Sbjct: 21  KPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSP-EDTFADKVQTAFPQVRVWKNGGQ 79

Query: 61  ERQDSVYSGLQEV-----DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK 115
            R ++V +G+ ++        ++ + +HD+AR  + S+ + +++  A       +     
Sbjct: 80  TRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPV 139

Query: 116 ATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK 175
           A   +      +  T+DR  LW+ QTPQ+ +  LL +     N  G  +TD+ S VE L 
Sbjct: 140 ADTLKRAESGQISATVDRSGLWQAQTPQLFQAGLLHRALAAENLGG--ITDEASAVEKLG 197

Query: 176 HPVYITEGSYTNIKVTTPDDLLIAERILN 204
               + +G   N+K+T P D  I   +L+
Sbjct: 198 VRPLLIQGDARNLKLTQPQDAYIVRLLLD 226

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 99.0 bits (245), Expect = 3e-26
 Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 6/203 (2%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           +PKQ+L + G+ +  Y   TF +   +  +V+V    + ++ E+      V         
Sbjct: 21  VPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDT 80

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
             Q    +      F+   V +HDSARP +  K V +VL  A   GAA L +     +  
Sbjct: 81  RSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALV- 139

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
              E+  +  + RK ++ + TPQ    ++LKK  E     G E  DD   V+ L   + +
Sbjct: 140 -RVENDRIEYIPRKGVYRILTPQAFSYEILKKAHE----NGGEWADDTEPVQKLGVKIAL 194

Query: 181 TEGSYTNIKVTTPDDLLIAERIL 203
            EG     KVT  +DL +A  I 
Sbjct: 195 VEGDPLCFKVTFKEDLELARIIA 217

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 86.5 bits (213), Expect = 8e-22
 Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 18/200 (9%)

Query: 1   MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
           + KQ+L L   P+ LY+    S     K+IVV               +          G 
Sbjct: 19  VKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTKNYEFIE------GGD 72

Query: 61  ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
            R +S+   L+ +D     V + D AR LV      +++ +  +       +    T   
Sbjct: 73  TRAESLKKALELIDSEF--VMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTL- 129

Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
                F    L R+ +  +QTPQ+ K  LLKK  +    + LE TDD + +  +   ++ 
Sbjct: 130 -----FDNEALQREKIKLIQTPQISKTKLLKKALD----QNLEFTDDSTAIAAMGGKIWF 180

Query: 181 TEGSYTNIKVTTPDDLLIAE 200
            EG     K+T  +DL   +
Sbjct: 181 VEGEENARKLTFKEDLKKLD 200

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 27/223 (12%), Positives = 52/223 (23%), Gaps = 41/223 (18%)

Query: 2   PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
            K  +P  G+P+  +              V               ++             
Sbjct: 23  SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPAPALTLPDRGG----------- 71

Query: 62  RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEA 121
             +++   L+ V+     V +     P +  + V+ VL  A         VP +A     
Sbjct: 72  LLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPIVPKEAVEARF 128

Query: 122 NSESFVVRTL-----DRKTLWEMQTPQVIKPDLLKKG----------------------F 154
                    L         L  +      K   L +                        
Sbjct: 129 PRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKL 188

Query: 155 ELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLL 197
            L      EV      +  ++    +T      + V   +DL+
Sbjct: 189 LLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 1  MPKQYLPLLGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEE---TKEKINVDLKF 55
          + KQ LP+  +P+ +Y  Y  S ++   +++I+++  P    ++ +      +  V   +
Sbjct: 24 VSKQLLPIYDKPM-IY--YPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSY 80

Query: 56 SLPGKER 62
           +  + R
Sbjct: 81 RVQEEPR 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	100.0
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	100.0
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.98
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.97
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.96
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.82
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.82
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.81
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.81
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.8
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	99.8
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.76
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.74
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.66
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	99.48
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	99.47
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.46
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.43
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.29
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.19
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	98.71
d2i5ea1	208	Hypothetical protein MM2497 {Methanosarcina mazei	98.63
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	95.79
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	91.15
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	90.86
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	87.52

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=100.00  E-value=2.1e-36  Score=235.73  Aligned_cols=205  Identities=82%  Similarity=1.238  Sum_probs=174.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|||||.|+++++.+++.++.|+||+++...+.+++....++..+.++.||.+|++|+.+|+..+..+.++|
T Consensus        22 ~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~~gg~~r~~sv~~~l~~~~~~~~~V  101 (226)
T d1w77a1          22 MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGKERQDSVYSGLQEIDVNSELV  101 (226)
T ss_dssp             CCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSCSSEEEEECCCSSHHHHHHHHHHTSCTTCSEE
T ss_pred             CCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhhhhhhccccccccccccccccchhhhhhhhhHhhhccccccc
Confidence            48999999999999999999999988999999998765555566666666778888899999999999999997677999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      ++|+||+||++++++.++++.....++++++.+..++.+....++.....++|+.++..++|+.|+...|..++....++
T Consensus       102 li~d~~~P~i~~~~i~~l~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~  181 (226)
T d1w77a1         102 CIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSE  181 (226)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBC------CCEEEEEEEEECHHHHHHHHHHHHHS
T ss_pred             eecccccccccHHHhhhhhhhhhccCceeeccccccceEEEccCCceeecccchhhhHHHHHHhHhhHHHHHHHHHHHhc
Confidence            99999999999999999999998888888888888776554445555567889999999999999999999988887777


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      ++++||+.++++..|.++.+++++..+++||||+||+.||.+|++
T Consensus       182 ~~~~TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL~~  226 (226)
T d1w77a1         182 GLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE  226 (226)
T ss_dssp             CCCCCC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHHHC
T ss_pred             CCCcCcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHhCc
Confidence            888999988888899999999999999999999999999999874

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=100.00  E-value=5e-34  Score=218.64  Aligned_cols=182  Identities=28%  Similarity=0.391  Sum_probs=158.4

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|+|||.|+++++.+...++.|+|++...  ..    .+.+...+.++.||.+|+.|+++||+.++  .++|
T Consensus        19 ~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~--~~----~~~~~~~~~~v~Gg~~r~~Sv~~gl~~~~--~~~V   90 (205)
T d1w55a1          19 VKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI--TY----MKKFTKNYEFIEGGDTRAESLKKALELID--SEFV   90 (205)
T ss_dssp             SCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCH--HH----HHTTCSSSEEEECCSSHHHHHHHHHTTCC--SSEE
T ss_pred             CCceeEEECCEEHHHHHHHHHHhhccccccccccccc--cc----cccccccccccccccchhhhhhhhhhhhh--hcce
Confidence            4899999999999999999999988889998887642  22    33444457788899999999999999985  6899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE  160 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~  160 (210)
                      ++|+||+||++++.|+++++....+++++++.|+.+++...+      ..++|+.++..||||+|+.+.|..++.    +
T Consensus        91 lIhd~~rP~i~~~~i~~li~~~~~~~~~i~~~~~~dti~~~~------~~~~R~~l~~~qTPQ~f~~~~l~~a~~----~  160 (205)
T d1w55a1          91 MVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFDN------EALQREKIKLIQTPQISKTKLLKKALD----Q  160 (205)
T ss_dssp             EEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEETT------EEECGGGCCEECSCEEEEHHHHHHHTS----S
T ss_pred             eeeccCcccCcHHHHHHHHhhhhccccccccccccccccccc------ccccchheeeeecchhhhhHHHHHHHH----c
Confidence            999999999999999999999988999999999988865432      458999999999999999888776653    4


Q ss_pred             CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHH
Q 028320          161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE  200 (210)
Q Consensus       161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~  200 (210)
                      +..+||+.++++..|.++.+++++..+++|+||+||+.||
T Consensus       161 ~~~~tDd~~~~~~~g~~v~~i~g~~~N~KIT~~eDl~~~e  200 (205)
T d1w55a1         161 NLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD  200 (205)
T ss_dssp             CCCCSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred             CCCCCcHHHHHHHcCCCEEEEecCcccCCCCCHHHHHHhc
Confidence            5678999999999999999999999999999999999886

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.98  E-value=5.1e-31  Score=204.93  Aligned_cols=200  Identities=27%  Similarity=0.408  Sum_probs=163.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHccc-----C
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD-----F   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~-----~   75 (210)
                      .||+|++++|+|||.|+++++.+++.++.|+||+++++. ........+.....+..|+.++..|+.+|+..+.     .
T Consensus        21 ~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~s~~~~l~~~~~~~~~~   99 (226)
T d1vgwa_          21 KPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT-FADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAA   99 (226)
T ss_dssp             -CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCS-THHHHHHHCTTSEEECCCCSSHHHHHHHHHHHHHHHSSSC
T ss_pred             CCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhhh-hhhhhcccccceeeccccccccchhhhHHHHHHHHhcccc
Confidence            489999999999999999999999888999999887752 3333444455455667788889999999987763     2


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC-CeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHH
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF  154 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~  154 (210)
                      +.++|+++++|+||+++..++++++.+...+ +++++.+..+...... +|.+...++|+.++..++|+.|..+.+...+
T Consensus       100 ~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~i~~~~~r~~~~~~~~p~~f~~~~l~~~~  178 (226)
T d1vgwa_         100 ETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRAE-SGQISATVDRSGLWQAQTPQLFQAGLLHRAL  178 (226)
T ss_dssp             TTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEES-SSBEEEEECCTTEEEEEEEEEEEHHHHHHHH
T ss_pred             cccceeecccccccCcHHHHHHHHhhhcccccceeecccccccceecc-CCeEEeccchHHHHHHHhhhcccHHHHHHHH
Confidence            5789999999999999999999999887654 4667777777665543 6778888999999999999999998887776


Q ss_pred             HHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320          155 ELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       155 ~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      ....  ..++||+.+++.+.|.++.++.++..+++||||+||+.||.+|+
T Consensus       179 ~~~~--~~~~tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ll~  226 (226)
T d1vgwa_         179 AAEN--LGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD  226 (226)
T ss_dssp             HC------CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred             HHhh--cCCCCcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHHhC
Confidence            5432  24689999999999999999999989999999999999999874

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.8e-29  Score=195.52  Aligned_cols=203  Identities=32%  Similarity=0.457  Sum_probs=168.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|||||.|+++++.+++.++.|+||++++... +..........+....++.++.+|+.+|+..+. +.++|
T Consensus        21 ~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~sv~~~~~~~~-~~~~v   98 (225)
T d1i52a_          21 CPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWV   98 (225)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCS-GGGSGGGGCTTEEEEECCSSHHHHHHHHHHTST-TCSEE
T ss_pred             CCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhh-hhhhhhccccccccccCCcchhHHHHhhhcccC-cccee
Confidence            4899999999999999999999998899999999987632 222222333456666676777899999999986 57899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcC-CeEEeeecccceEEcc-CCCceeeecCccCeeeecCCcccChHHHHHHHHHHH
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVN  158 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~-~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~  158 (210)
                      +++++|+||++++++.++++...... ..+...+..++..... ..+....+++|..++..++|+.|..+.+...+....
T Consensus        99 l~~~~~~p~i~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~  178 (225)
T d1i52a_          99 LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRAL  178 (225)
T ss_dssp             EECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             eeeccCCCCCCHHHHHHHHhhhhhcccccccccceeeccchhcccccccccccchHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            99999999999999999998887654 4667777777766542 234555677888899999999999999998888877


Q ss_pred             hcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320          159 REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       159 ~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                      ++++++||...++...|.++.++.++..+++||||+||+.||.++++
T Consensus       179 ~~~~~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l~r  225 (225)
T d1i52a_         179 NEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTR  225 (225)
T ss_dssp             HTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC
T ss_pred             hcCCCCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHhCc
Confidence            77888999999999999999999998889999999999999999874

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=6.7e-29  Score=192.16  Aligned_cols=199  Identities=29%  Similarity=0.399  Sum_probs=161.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSEL   79 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~   79 (210)
                      .||+|++++|||||+|+++++.+++.++.|+|+++.+....+.+. ......+.++.++.++..|+.+++..+.. ..+.
T Consensus        21 ~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~   99 (221)
T d1vpaa_          21 VPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKR-VFHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSY   99 (221)
T ss_dssp             SCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTT-CCCTTEEEEEECCSSHHHHHHHHHHHHGGGCCSE
T ss_pred             CCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhhHHHhh-hccccccccccccccccchHHHHHHHHHhcCCCc
Confidence            489999999999999999999999889999999987653322211 11233566778888889999999988753 5689


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR  159 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~  159 (210)
                      ++++++|+||++++++++++..+.+.+.++.+.+..+.+.... ++ ....++|+.++..++|+.|+.+.+...+.    
T Consensus       100 v~~~~~d~p~~~~~~i~~li~~~~~~~~~~~~~~~~d~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----  173 (221)
T d1vpaa_         100 VLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVE-ND-RIEYIPRKGVYRILTPQAFSYEILKKAHE----  173 (221)
T ss_dssp             EEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEE-TT-EEEEECCTTEEEEEEEEEEEHHHHHHHHT----
T ss_pred             EEEeccccccccHHHHHhhhhhhcccccccccccccceeEeec-Cc-cceecchHHHHHhhhhhhhhHHHHHHHHH----
Confidence            9999999999999999999999988888777777777665543 22 23456788999999999999877766543    


Q ss_pred             cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320          160 EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS  206 (210)
Q Consensus       160 ~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~  206 (210)
                      ++.+++|+.+++...|.++.++.++..+++||||+||++||.+++++
T Consensus       174 ~~~~~tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk~~  220 (221)
T d1vpaa_         174 NGGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREW  220 (221)
T ss_dssp             TCCCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHH
T ss_pred             hCCCCccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHhcc
Confidence            44578999999999999999999988899999999999999999875

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.82  E-value=1.2e-19  Score=139.19  Aligned_cols=188  Identities=18%  Similarity=0.200  Sum_probs=122.4

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-----cCCccHHHHHHHHHHcccCC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-----LPGKERQDSVYSGLQEVDFN   76 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-----~~~~~~~~si~~~l~~~~~~   76 (210)
                      +|+|++++|+|||+|+++++.+++.+++|+|+++++.   +.+.+++++..+...     .+..+....+..+++.+..+
T Consensus        20 ~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~~~---i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (225)
T d1eyra_          20 LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGL---IAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSN   96 (225)
T ss_dssp             TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESCHH---HHHHHHHTTCEEEECCHHHHSTTCCHHHHHHHHHHHHTCC
T ss_pred             CccccccCCeEHHHHHHHHHHHcCCCceEEEeeccch---hhhhhhhhcceeeeeccccccccccchhhccccccccccc
Confidence            4999999999999999999999998999999998754   567888888765332     22333456677888887666


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc-c---eEEccCCCceeeecCccC--eeeecCCcccChH
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-T---IKEANSESFVVRTLDRKT--LWEMQTPQVIKPD  148 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~-~---~~~~~~~g~v~~~~~r~~--~~~~~~P~~f~~~  148 (210)
                      .|+|++++||.||+++++|+++++.+...  +..+++++..+ +   .+. .++|..........  ...+..|..|...
T Consensus        97 ~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~  175 (225)
T d1eyra_          97 SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQ-INNGEYAPMRHLSDLEQPRQQLPQAFRPN  175 (225)
T ss_dssp             SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEE-CSSSCEEESSCGGGGTSCGGGSCCEEEEE
T ss_pred             cceEEEeeccccccccccccccceeeccccccccceeecccccccccccc-cccccccccccccccccccccCcceeeec
Confidence            79999999999999999999999988654  34566665542 1   222 22343322211111  1111122221100


Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHH---hCCCCeEE-EecCCCCccccChhhHHHHHHHhh
Q 028320          149 LLKKGFELVNREGLEVTDDVSIVE---HLKHPVYI-TEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       149 ~l~~~~~~~~~~~~~~~d~~~~~~---~~g~~v~~-v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                                 .++++.....+..   ..+.++.. +.....++||||++||+.||.+++
T Consensus       176 -----------g~iy~~~~~~l~~~~~~~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~~  224 (225)
T d1eyra_         176 -----------GAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQAENILN  224 (225)
T ss_dssp             -----------EEEEEEEHHHHHHHTSSCCSSCEEEECCTTTTCCCCSHHHHHHHHHHHT
T ss_pred             -----------ceeEEeeHHHHHHcCCccCCCeEEEEcCccceECCCCHHHHHHHHHHhC
Confidence                       0112222222222   13444544 455678999999999999999986

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.82  E-value=6.4e-20  Score=142.75  Aligned_cols=199  Identities=15%  Similarity=0.134  Sum_probs=124.1

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCc-cHHHHHHHHHHcccCCCCEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~-~~~~si~~~l~~~~~~~d~v   80 (210)
                      +|+|++|+|+|||+|+++++++++.+++|+|+|+++.   +.+.++.+|..+....+.. +....+..++..+.  .|++
T Consensus        18 ~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~v   92 (245)
T d1h7ea_          18 GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPR---VEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVE--ADIY   92 (245)
T ss_dssp             TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHH---HHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHSC--CSEE
T ss_pred             CccccccCCccHHHHHHHHHHhCCCCCeEEEeccccc---chhhhhhcCceEEEecCccccccHHHHHHHHhcC--CCEE
Confidence            3999999999999999999999999999999998764   4567778887776554422 23555666777765  7899


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--------eEEc-cCCCceeee-c-----Cc----cCeeee
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--------IKEA-NSESFVVRT-L-----DR----KTLWEM  139 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~--------~~~~-~~~g~v~~~-~-----~r----~~~~~~  139 (210)
                      +.+++|.||++.+.++.++..+.....  ..........        +... ...+..... .     .+    ...+..
T Consensus        93 v~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (245)
T d1h7ea_          93 INLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKH  172 (245)
T ss_dssp             EECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTGGGCCEEEE
T ss_pred             EEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeeccchhhhhhhhhhhhhhhhhccccccccee
Confidence            999999999999999999998875432  2222221110        0010 111111100 0     00    011111


Q ss_pred             cCCcccChHHHHHHHHHHHhcCC---CCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320          140 QTPQVIKPDLLKKGFELVNREGL---EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       140 ~~P~~f~~~~l~~~~~~~~~~~~---~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      .....|....|... ........   +..+.. .+...|.++.++..+...++|||++||+.|+.+++.+.
T Consensus       173 ~g~~~~~~~~l~~~-~~~~~s~~e~~e~ie~l-r~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~~  241 (245)
T d1h7ea_         173 VGIYAYRRDVLQNY-SQLPESMPEQAESLEQL-RLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL  241 (245)
T ss_dssp             EEEEEEEHHHHHHG-GGSCCCHHHHHHTCTTH-HHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred             eeeEEeeecccccc-ccccCChhhhhhhHHHH-HHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHhhh
Confidence            12234554443321 10000000   000000 12247889998888888899999999999999998764

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.81  E-value=1e-18  Score=136.04  Aligned_cols=196  Identities=12%  Similarity=0.187  Sum_probs=122.4

Q ss_pred             C-ccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCc-cHHHHHHHHHHccc-CCCC
Q 028320            2 P-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEVD-FNSE   78 (210)
Q Consensus         2 ~-K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~-~~~~si~~~l~~~~-~~~d   78 (210)
                      | |+|++|+|+|||+|+++++++++ +++|+|+|+++.   +.+.+.++|.++.+..+.. +..+.+..++.... .+.+
T Consensus        16 p~KnL~~i~GkpLI~~~i~~a~~s~-i~~iiVsTd~~~---i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (246)
T d1vh1a_          16 PGKPLVDINGKPMIVHVLERARESG-AERIIVATDHED---VARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDT   91 (246)
T ss_dssp             CCTTTCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHH---HHHHHHHTTCEEEECC-----CHHHHHHHHHHTTCCTTC
T ss_pred             CCchhhhcCCccHHHHHHHHHHHcC-CCcEEEEecCcc---ccchhhcccccceeecccccccchHHHHHHHhhcccccc
Confidence            5 99999999999999999999997 899999998865   4677888888877654311 11334444554443 3578


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--------eEEc-cCCCceeee----cC-----------
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--------IKEA-NSESFVVRT----LD-----------  132 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~--------~~~~-~~~g~v~~~----~~-----------  132 (210)
                      .++.+++|+||+++++++.+++.+.....  +..+++....        +..+ +.+|++...    .+           
T Consensus        92 ~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (246)
T d1vh1a_          92 VIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLE  171 (246)
T ss_dssp             EEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSSCCC
T ss_pred             eeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeecccCcccccccccchhhhhhhhhhhh
Confidence            99999999999999999999998876543  4444544322        1111 223433211    00           


Q ss_pred             --ccCeeeecCCcccChHHHHHHHHHHHhcC---CCCCcHHHHHHhCCCCeEEE-ecCCCCccccChhhHHHHHHHh
Q 028320          133 --RKTLWEMQTPQVIKPDLLKKGFELVNREG---LEVTDDVSIVEHLKHPVYIT-EGSYTNIKVTTPDDLLIAERIL  203 (210)
Q Consensus       133 --r~~~~~~~~P~~f~~~~l~~~~~~~~~~~---~~~~d~~~~~~~~g~~v~~v-~~~~~~~dIdt~~Dl~~a~~~~  203 (210)
                        ...++...+-++|+...|...... ....   .+-.+. -.+-.+|.++.++ ..+...+||||++||++||++|
T Consensus       172 ~~~~~~~~~~giy~~~~~~l~~~~~~-~~s~~E~~e~le~-lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m  246 (246)
T d1vh1a_         172 TVGDNFLRHLGIYGYRAGFIRRYVNW-QPSPLEHIEMLEQ-LRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM  246 (246)
T ss_dssp             CCCSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHHHHTCTT-HHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred             ccchhhheecceeeechhhhhhhccC-CCChHHHHHhHHH-HHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence              011222222355666555432210 0000   000110 1122478888864 4456789999999999999975

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.81  E-value=2.9e-18  Score=133.88  Aligned_cols=202  Identities=13%  Similarity=0.179  Sum_probs=120.8

Q ss_pred             CC-ccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCcc-HHHHHHHHHHcc-cCCC
Q 028320            1 MP-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE-RQDSVYSGLQEV-DFNS   77 (210)
Q Consensus         1 ~~-K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~-~~~si~~~l~~~-~~~~   77 (210)
                      +| |+|++|+|+|||.|+++++++++ +++|+|+|+++.   +.+.+.++|..+.+...... ..+....+.... ..+.
T Consensus        15 lp~Knl~~i~GkpLI~~~i~~a~~s~-i~~IiVsTd~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (255)
T d1vica_          15 LPGKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNEN---VADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDN   90 (255)
T ss_dssp             STTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHH---HHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCTT
T ss_pred             CCCchhhhhCCcCHHHHHHHHHHHCC-CCeEEEEcCCcc---cchhhhhhccccceeeeccCCcchhhHHHHHHhhccCC
Confidence            35 99999999999999999999997 899999998865   46777888887776554221 123333333333 3356


Q ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc---------eEEccCCCceeeec------Cc-------
Q 028320           78 ELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT---------IKEANSESFVVRTL------DR-------  133 (210)
Q Consensus        78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~---------~~~~~~~g~v~~~~------~r-------  133 (210)
                      ++++++++|+||+++++++.+++.......  ....+.....         ....+..+.+....      .+       
T Consensus        91 ~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (255)
T d1vica_          91 EIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQ  170 (255)
T ss_dssp             CEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCS
T ss_pred             ceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeeccCCcccccccccccccchhhhhcc
Confidence            899999999999999999999998865432  2223332211         11112223221100      00       


Q ss_pred             --------cCeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHH--HHHhCCCCeEEE-ecCCCCccccChhhHHHHHHH
Q 028320          134 --------KTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVS--IVEHLKHPVYIT-EGSYTNIKVTTPDDLLIAERI  202 (210)
Q Consensus       134 --------~~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~--~~~~~g~~v~~v-~~~~~~~dIdt~~Dl~~a~~~  202 (210)
                              ..++......+|+...+..... ......+..+..+  .+-..|.++.++ ......+||||++||+.||.+
T Consensus       171 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~i  249 (255)
T d1vica_         171 DVQKVQLSDAYLRHIGIYAYRAGFIKQYVQ-WAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAI  249 (255)
T ss_dssp             CGGGCCCCTTCEEEEEEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred             chhhcccccchheeeeeecccHHHHhhhhc-cCCChhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHH
Confidence                    0111111223455554443221 1000000000000  112468888765 445578999999999999999


Q ss_pred             hhccc
Q 028320          203 LNLSS  207 (210)
Q Consensus       203 ~~~~~  207 (210)
                      ++...
T Consensus       250 lkkn~  254 (255)
T d1vica_         250 LAANG  254 (255)
T ss_dssp             HHHTC
T ss_pred             HHHcC
Confidence            98653

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.9e-19  Score=136.96  Aligned_cols=203  Identities=11%  Similarity=0.083  Sum_probs=135.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d   78 (210)
                      +||||++++|||||+|+++++.+.+ +++|+|++++.. ..+.+...+  ....++  ....+..+++..++..+.. ..
T Consensus        20 ~PKpli~i~gkpiie~~i~~l~~~~-~~~iiiv~~~~~-~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~i~~-~~   94 (248)
T d2oi6a2          20 LPKVLHTLAGKAMVQHVIDAANELG-AAHVHLVYGHGG-DLLKQALKD--DNLNWVLQAEQLGTGHAMQQAAPFFAD-DE   94 (248)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCH-HHHHHHCCC--TTEEEEECSSCCCHHHHHHHHGGGSCT-TS
T ss_pred             CCeeeEEECChhHHHHHHHHHHHcC-CcEEEeccCccc-ceeeeeccc--ccccccccccCcccHHHHHhhhhhhcc-cc
Confidence            5999999999999999999999986 899999999985 333333222  222222  2234457888888888763 45


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccce---EEccCCCceeeec--------CccCeeeecCCcccCh
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI---KEANSESFVVRTL--------DRKTLWEMQTPQVIKP  147 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~g~v~~~~--------~r~~~~~~~~P~~f~~  147 (210)
                      .+++..+|.|+.+...+..+.........++...+..++.   ....++|......        .+.......+++.|+.
T Consensus        95 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (248)
T d2oi6a2          95 DILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANG  174 (248)
T ss_dssp             EEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEETTEEEEEECGGGCCTTGGGCCEEEEEEEEEEH
T ss_pred             ceeeecCccccccchhHHHHHHHhhccccceeEEEecCCccccccccccCccceeeeccCCChhhhhhhhhhhhhhccch
Confidence            6788889999999999988887655544455445544421   1111223222111        1222333445677777


Q ss_pred             HHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCC--ccccChhhHHHHHHHhhcccC
Q 028320          148 DLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTN--IKVTTPDDLLIAERILNLSSE  208 (210)
Q Consensus       148 ~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~~~--~dIdt~~Dl~~a~~~~~~~~~  208 (210)
                      ..+...+.....    .+++++|....+...|.++..+..+..+  ++||||+||+.||++++.+.+
T Consensus       175 ~~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~~~  241 (248)
T d2oi6a2         175 ADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQA  241 (248)
T ss_dssp             HHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            666665543211    2357888888888889999988775433  579999999999999987653

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5e-20  Score=141.78  Aligned_cols=188  Identities=13%  Similarity=0.067  Sum_probs=119.6

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-----cCCccHHHHHHHHHHcccCC
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-----LPGKERQDSVYSGLQEVDFN   76 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-----~~~~~~~~si~~~l~~~~~~   76 (210)
                      .|+|++++|+|||+|+++++++++.+++|+|+|+++.   +.+.+.+++..+...     .+.....+.+.+++.... .
T Consensus        19 ~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~   94 (228)
T d1qwja_          19 LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDE---IENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHN-E   94 (228)
T ss_dssp             CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHH---HHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHHHTTCT-T
T ss_pred             CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecchhh---hhhhhhhcCccccccccccccccchhhhhhhhcccccc-c
Confidence            3999999999999999999999999999999998764   567777888665432     223344677777877654 4


Q ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccceEEccCCCc--eeee--cCccC-eeeecCCcccChHH
Q 028320           77 SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATIKEANSESF--VVRT--LDRKT-LWEMQTPQVIKPDL  149 (210)
Q Consensus        77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~g~--v~~~--~~r~~-~~~~~~P~~f~~~~  149 (210)
                      .+.++++++|.||+++++|+++++.+...+.  ++++.+.....+.....+.  +...  ..... .+.++.|..|... 
T Consensus        95 ~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qd~~~~y~~n-  173 (228)
T d1qwja_          95 VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYEN-  173 (228)
T ss_dssp             CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTTCCCCBSSSBTTBCCCTTTSCCEEEEE-
T ss_pred             cceeeeecccccccCchhhhhhhhhhhccCccccccccccccccchhhhhhccccccchhhhhhhccccccccceeeee-
Confidence            6888999999999999999999999976544  5655555443332111110  0000  01111 1111222222100 


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHh---CCCCeEE-EecCCCCccccChhhHHHHHHHhhc
Q 028320          150 LKKGFELVNREGLEVTDDVSIVEH---LKHPVYI-TEGSYTNIKVTTPDDLLIAERILNL  205 (210)
Q Consensus       150 l~~~~~~~~~~~~~~~d~~~~~~~---~g~~v~~-v~~~~~~~dIdt~~Dl~~a~~~~~~  205 (210)
                                ..+++... .++..   .|.+... ......++||||++||+.||.++..
T Consensus       174 ----------g~~~~~k~-~~~~~~~~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k  222 (228)
T d1qwja_         174 ----------GSFYFAKR-HLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR  222 (228)
T ss_dssp             ----------EEEEEEEH-HHHHTTCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred             ----------eEEEEEeH-HHHhhCCcCCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence                      00122221 12221   3445554 4555678999999999999999864

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.76  E-value=4.3e-17  Score=126.02  Aligned_cols=204  Identities=14%  Similarity=0.108  Sum_probs=127.5

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV   80 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v   80 (210)
                      .||+|++++|||||+|+++++.+.+ +++++|++++.. ..+...... ...........+...++..++..+....+.+
T Consensus        19 ~PK~L~~i~Gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~~~~~~~~-~~~~~~~~~~~g~~~~~~~a~~~l~~~~~~~   95 (250)
T d1g97a2          19 LPKVLHKVAGISMLEHVFRSVGAIQ-PEKTVTVVGHKA-ELVEEVLAG-QTEFVTQSEQLGTGHAVMMTEPILEGLSGHT   95 (250)
T ss_dssp             SCGGGSEETTEEHHHHHHHHHGGGC-CSEEEEEECTTH-HHHHHHTTT-TSEEEECSSCCCHHHHHHTTHHHHTTCCSEE
T ss_pred             CCceeeEECCeeHHHHHHHHHHHcC-CCeEEEeccccc-chhhhhccc-cccccccccccccchHHHHHHHhhhcccCcc
Confidence            4899999999999999999999986 899999999975 333332221 1222222222334556666777766545677


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecCcc--------CeeeecCCcccC
Q 028320           81 CIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRK--------TLWEMQTPQVIK  146 (210)
Q Consensus        81 l~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~r~--------~~~~~~~P~~f~  146 (210)
                      +++.+|.|++++..++++++.....++  ...+.+...+.    .....++.+.......        .-+.....+.|.
T Consensus        96 ~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~y~f~  175 (250)
T d1g97a2          96 LVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFD  175 (250)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHTCCEEEEEEEEEE
T ss_pred             eEEecCCCccCHHHHHHHHHHHhhhccccccccceecccCCCceEEEeeceEEEEeeccccccccccccceeeeeeeecc
Confidence            889999999999999999998876654  33333333221    0111222232221110        011112235566


Q ss_pred             hHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCC--CccccChhhHHHHHHHhhccc
Q 028320          147 PDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYT--NIKVTTPDDLLIAERILNLSS  207 (210)
Q Consensus       147 ~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~~--~~dIdt~~Dl~~a~~~~~~~~  207 (210)
                      ...+...+.....    ...++++....+...|.++..+..+..  .++|||++||+.||+++++|.
T Consensus       176 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~~  242 (250)
T d1g97a2         176 NERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRI  242 (250)
T ss_dssp             HHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHHH
Confidence            6555554432111    113566666777778889987765543  356999999999999998663

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=8.6e-18  Score=129.71  Aligned_cols=100  Identities=16%  Similarity=0.162  Sum_probs=81.8

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC   81 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl   81 (210)
                      ||+|++++|||||+|+++++.+++ ++.|+|+++++...          .......++.+...++..|++.++   +.++
T Consensus        23 ~K~L~~i~Gkpli~~~~~~l~~~~-~~~vvv~~~~~~~~----------~~~~~~~~~~~~~~~v~~al~~~~---~~~l   88 (231)
T d2dpwa1          23 SKALVPYRGRPMVEWVLEALYAAG-LSPVYVGENPGLVP----------APALTLPDRGGLLENLEQALEHVE---GRVL   88 (231)
T ss_dssp             BGGGSEETTEETHHHHHHHHHHTT-CEEEEESCCSSCSS----------CCSEEECCCSSHHHHHHHHHHTCC---SEEE
T ss_pred             CceeeEECCeeHHHHHHHHHHhcC-CCeEEeeeeccccc----------eeeeecccchHHHHHHHHHHHhhc---CceE
Confidence            599999999999999999999986 78999998887521          112334455667899999999975   6789


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecc
Q 028320           82 IHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK  115 (210)
Q Consensus        82 ~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~  115 (210)
                      +++||+||++++.|+.+++.+.+.++++++.+..
T Consensus        89 v~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~  122 (231)
T d2dpwa1          89 VATGDIPHLTEEAVRFVLDKAPEAALVYPIVPKE  122 (231)
T ss_dssp             EEETTCTTCCHHHHHHHHHHCCSCSEEEEEEEHH
T ss_pred             EeeCCCccCCHHHHHHHHHHhhhcCceEEEEecc
Confidence            9999999999999999999887777777776654

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=4.6e-16  Score=115.91  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=70.2

Q ss_pred             CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE--ecCCccHHHHHHHHHHcccCCCCE
Q 028320            2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNSEL   79 (210)
Q Consensus         2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~--~~~~~~~~~si~~~l~~~~~~~d~   79 (210)
                      ||+|++++|+|||+|+++++...  +++|+|+++.+.     +....++..+..  ..++.....++..++....  .+.
T Consensus        21 ~K~ll~~~g~~ll~~~l~~l~~~--~~~ivv~~~~~~-----~~~~~~~~~v~~d~~~~~~~~~~g~~~~~~~~~--~~~   91 (188)
T d1e5ka_          21 DKGLLELNGKPLWQHVADALMTQ--LSHVVVNANRHQ-----EIYQASGLKVIEDSLADYPGPLAGMLSVMQQEA--GEW   91 (188)
T ss_dssp             CGGGSEETTEEHHHHHHHHHHHH--CSCEEEECSSSH-----HHHHTTSCCEECCCTTCCCSHHHHHHHHHHHCC--SSE
T ss_pred             CcccCEECCEehhHHHHhhhccc--ccccccccCccH-----HhhhhcCCCccccccccccchhHHHHHHHHhcc--cce
Confidence            79999999999999999998765  578888877653     222334444432  2334445667777777654  689


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           80 VCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        80 vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                      ++++.||+|++++++++.+++....
T Consensus        92 vlv~~~D~P~i~~~~i~~L~~~~~~  116 (188)
T d1e5ka_          92 FLFCPCDTPYIPPDLAARLNHQRKD  116 (188)
T ss_dssp             EEEEETTCTTCCTTHHHHHHHTCTT
T ss_pred             EEEeccCCCCCCHHHHHHHHHhccc
Confidence            9999999999999999999875433

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.2e-13  Score=109.50  Aligned_cols=198  Identities=14%  Similarity=0.183  Sum_probs=124.9

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh---hcCCcEEEecCCc--cHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLPGK--ERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~---~~~~~v~~~~~~~--~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|||||+|+++.+..++ +++|+|++++.....++++..   ++|.++.++.+..  +.++++..+.+.++ 
T Consensus        22 ~pK~llpi~~kp~i~~~l~~l~~~g-i~~i~iv~~~~~~~~~~~~~~~g~~~gi~I~y~~Q~~plGta~Ai~~a~~fi~-   99 (291)
T d1mc3a_          22 VSKQLLPIYDKPMIYYPLSVLMLAG-IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLN-   99 (291)
T ss_dssp             SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHHT-
T ss_pred             CCccccEECCEehHHHHHHHHHHcC-CCEEEEEeCcccHHHHHHHhCchHhhCcEEEEEECCCCCchHHHHHHHHHHhC-
Confidence            5999999999999999999999996 899999999886556666654   4677887765533  33678888888875 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccce----EEccCCCceeeecC-----ccCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATI----KEANSESFVVRTLD-----RKTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~~----~~~~~~g~v~~~~~-----r~~~~~~~~P~~  144 (210)
                      +.+.++++ +|-.|...+ +..+++.....  ++.+.+.++.+|.    ...+++|.+..+++     .|++.. -.=+.
T Consensus       100 ~~~~~lvl-gddi~~~~~-~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~g~i~~i~EKP~~p~Sn~a~-~GiY~  176 (291)
T d1mc3a_         100 GEPSCLVL-GDNIFFGQG-FSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSNWAV-TGLYF  176 (291)
T ss_dssp             TSCEEEEE-TTEEEECSS-CHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCBSCSSCSCSEEE-EEEEE
T ss_pred             CCCeEEEE-CCCcccCcC-HHHHHHHHHhCcCCcEEEEEECCCcccCCCceeccCcceeEEEECCCCCCCCeEE-EEEEE
Confidence            23455554 666665543 55555555433  4456677776652    23455677766543     222221 11145


Q ss_pred             cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEec-CCCCccccChhhHHHHHHHhh
Q 028320          145 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       145 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~-~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      |....+.. .+...   +.+++++|....+-..+.......+ ...++|+.|+++|..|..+++
T Consensus       177 f~~~v~~~-~~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v~  239 (291)
T d1mc3a_         177 YDSKVVEY-AKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ  239 (291)
T ss_dssp             CCTHHHHH-HHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred             eChHHHHH-HhcCCCCCCCceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence            55544333 22211   1235666655544444432223334 345899999999999998764

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.47  E-value=3.3e-13  Score=107.12  Aligned_cols=197  Identities=17%  Similarity=0.238  Sum_probs=126.6

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh---hcCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~---~~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||+|+|++|||||.|+++.+..++ +.+|++++.....+.+++...   .++.++.++.+  ..+.++++..|.+.+. 
T Consensus        22 ~pKpllpi~gkPiI~~~l~~l~~~G-i~ei~ii~~~~~~~~i~~~~~~~~~~g~~I~y~~q~~~~Gta~ai~~a~~~i~-   99 (292)
T d1fxoa_          22 ISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIG-   99 (292)
T ss_dssp             SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHT-
T ss_pred             CCcccCEECCEehHHHHHHHHHHCC-CCEEEEEeCcCCHHHHHHHhccccccCeEEEEccCCCCCcHHHHHHhhhhhcC-
Confidence            5999999999999999999999996 899988888765566666654   45677777544  2234778888888886 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----eEEccCCCceeeecC-----ccCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLD-----RKTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~----~~~~~~~g~v~~~~~-----r~~~~~~~~P~~  144 (210)
                      +.+.++++.+|  ++....+.++++......  +.+.+.++.+|    +...+++|++..+++     .|++... .=+.
T Consensus       100 ~~~~~lil~dD--~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~p~~yGV~~~d~~~ki~~~~EKP~~p~Snla~~-G~Y~  176 (292)
T d1fxoa_         100 NDLSALVLGDN--LYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVT-GLYF  176 (292)
T ss_dssp             TSEEEEEETTE--EEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEESCSSCSSSEEEE-EEEE
T ss_pred             CCceEEEEccc--cccCcCHHHHHHHHHhCCCCcEEEEEECCCHHHCeEEEEcCCCCEeEEEECCCCCCCCcEEE-EEEE
Confidence            34566666665  344556899998887654  45666677655    333466777776543     2332211 1144


Q ss_pred             cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEE-EecC-CCCccccChhhHHHHHHHhh
Q 028320          145 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYI-TEGS-YTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       145 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~-v~~~-~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      |....+.. .+...   +.+++++|-...+-..+ ++.+ ..+. ..++|+.|++||..|..++.
T Consensus       177 f~~~~~~~-~~~l~~s~rgE~eitD~~~~~l~~~-~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~  239 (292)
T d1fxoa_         177 YDQQVVDI-ARDLKPSPRGELEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIA  239 (292)
T ss_dssp             ECTTHHHH-HHHCCCCTTSSCCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred             EChHHHHH-HHhCCCCCCCchhhHHHHHHHHHcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence            55444322 22221   12355666544444444 3332 2332 35899999999999988765

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.46  E-value=1.3e-13  Score=105.09  Aligned_cols=191  Identities=15%  Similarity=0.156  Sum_probs=105.0

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC--ccHHHHHHHHHHcccCCCC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVDFNSE   78 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~--~~~~~si~~~l~~~~~~~d   78 (210)
                      .||+|++++|+|||+|+++.+.+.+ +++|+|++++.. +.++...+++++++.+....  .+.++|+..|.+.++  .+
T Consensus        24 ~pK~ll~i~gkpli~~~i~~l~~~g-~~~i~iv~g~~~-e~i~~~~~~~~i~i~~~~~~~~~Gt~~sl~~a~~~l~--~~   99 (229)
T d1jyka_          24 TPKALVQVNQKPLIEYQIEFLKEKG-INDIIIIVGYLK-EQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA--NS   99 (229)
T ss_dssp             SCGGGCEETTEEHHHHHHHHHHHTT-CCCEEEEECTTG-GGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT--TE
T ss_pred             CCcceeEECCEEHHHHHHHHHHHhC-Ccccccccccch-hhhhhhhhhccccccccccccccccccccccchhhhc--cc
Confidence            4999999999999999999999885 899999999865 45666667788777665432  234788888877764  23


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----eEEccCCCceeeecCccCeeeecC-CcccChHHHH--
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVRTLDRKTLWEMQT-PQVIKPDLLK--  151 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~g~v~~~~~r~~~~~~~~-P~~f~~~~l~--  151 (210)
                      . +++ +|..+... .+.+.+     ..+...++...++    ....++++.+..+.....-....+ -..|......  
T Consensus       100 ~-ii~-~dd~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~  171 (229)
T d1jyka_         100 Y-VID-ADNYLFKN-MFRNDL-----TRSTYFSVYREDCTNEWFLVYGDDYKVQDIIVDSKAGRILSGVSFWDAPTAEKI  171 (229)
T ss_dssp             E-EEE-TTEEESSC-CCCSCC-----CSEEEEECEESSCSSCCEEEECTTCBEEEEECCCSSEEBCCSEEEECHHHHHHH
T ss_pred             c-ccc-cccccccc-chhhhh-----hccccceeeeeeccccceeEEccCCceeeEEEecccceEEEEEEEEcHHHHHHH
Confidence            3 334 44444322 111110     1222222222221    222344566654432211111112 2344433322  


Q ss_pred             -HHHHHHHhcC--CC-CCcHHHHHHh-CCCCeEEEecC-CCCccccChhhHHHHHHHhh
Q 028320          152 -KGFELVNREG--LE-VTDDVSIVEH-LKHPVYITEGS-YTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       152 -~~~~~~~~~~--~~-~~d~~~~~~~-~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~  204 (210)
                       ..+.....++  .. +.+. .+... ....+.+.... ..+++|||++||..|+.+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~K  229 (229)
T d1jyka_         172 VSFIDKAYVSGEFVDLYWDN-MVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILK  229 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCTTH-HHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccccchhHHHH-HHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhhC
Confidence             2222221111  11 2222 12211 23455554443 35789999999999999874

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.43  E-value=1.7e-12  Score=103.21  Aligned_cols=198  Identities=15%  Similarity=0.244  Sum_probs=120.3

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh---hcCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLP--GKERQDSVYSGLQEVDF   75 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~---~~~~~v~~~~~--~~~~~~si~~~l~~~~~   75 (210)
                      +||||+|++|+|||+|+++.+...+ +++++|+|++.....+++..+   .++.++.++..  +.+.++|+..+...++ 
T Consensus        24 ~PK~ll~i~~kpii~~~l~~l~~~g-~~~i~Iv~~~~~~~~~~~~~~~~~~~~~~i~~v~e~~~~gta~Al~~a~~~l~-  101 (295)
T d1lvwa_          24 VSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIG-  101 (295)
T ss_dssp             SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHHT-
T ss_pred             CCcccCeECCEEHHHHHHHHHHHCC-CCeEEEEeCcccHHHHHHHhccchhcCCEEEEEECCCCCCHHHHHHHHHHHcC-
Confidence            5999999999999999999999886 899999999887555666653   45666666543  2334678888888886 


Q ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----eEEccCCCceeeecCc-----cCeeeecCCcc
Q 028320           76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQTPQV  144 (210)
Q Consensus        76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~P~~  144 (210)
                      +.+.++++ +|-++++. .+..++......+  +.+.+.|+.++    +...++++.|..+.+.     +.+ ....-+.
T Consensus       102 ~~~~~li~-~~d~~~~~-~~~~~~~~~~~~~~~~ti~~~~~~~~~~yG~i~~~~~~~v~~~~EKp~~~~s~~-~~~Giy~  178 (295)
T d1lvwa_         102 DSKVALVL-GDNVFYGH-RFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSNY-VVPGLYF  178 (295)
T ss_dssp             TSCEEEEE-TTCCEECT-THHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEESCSSCSCSE-ECCSEEE
T ss_pred             CCCEEEEe-CCcceech-hHHHHHHHHHhCCCCeEEEEEEcCCCccccEEEECCCCcEEEEeecccCcccce-eecceEE
Confidence            34566655 55577765 4555555555433  34556665544    2223456666654321     111 1111245


Q ss_pred             cChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCC-CeEEEecCCCCccccChhhHHHHHHHhh
Q 028320          145 IKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILN  204 (210)
Q Consensus       145 f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~-~v~~v~~~~~~~dIdt~~Dl~~a~~~~~  204 (210)
                      |..+.+.. ......   ..+++++....+...+. ++.....+..++|++|++||..++..++
T Consensus       179 ~n~~if~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~  241 (295)
T d1lvwa_         179 YDNQVVEI-ARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE  241 (295)
T ss_dssp             ECTTHHHH-HHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred             ECHHHHHH-HHhcCCCcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence            55554432 222111   11333443333333443 4444555667899999999999987654

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.29  E-value=1.2e-10  Score=92.32  Aligned_cols=200  Identities=12%  Similarity=0.002  Sum_probs=116.8

Q ss_pred             CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHH-hhcC----------CcEEEecC--------Cc
Q 028320            1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK-EKIN----------VDLKFSLP--------GK   60 (210)
Q Consensus         1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~-~~~~----------~~v~~~~~--------~~   60 (210)
                      +||+|+|++|+ |||+|+++.+.+++ +++|+|++++... .+.+.. ..+.          ....+...        ..
T Consensus        32 ~PK~llpv~g~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~-~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  109 (307)
T d1yp2a2          32 RAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQ  109 (307)
T ss_dssp             SCGGGCEETTTEETTHHHHHHHHHTT-CCEEEEEESCCCH-HHHHHHHHHCC--------CCEEEEEESCSSTTSCCCCC
T ss_pred             CCcceEEECCCCCHHHHHHHHHHHcC-CCEEEEEeccccc-cchhhhhcccccccccccccccceeeceeeecccccccc
Confidence            59999999885 99999999999986 8999999999873 333333 2221          11112111        12


Q ss_pred             cHHHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccc------ceEEccCCCceeeec
Q 028320           61 ERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKA------TIKEANSESFVVRTL  131 (210)
Q Consensus        61 ~~~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~------~~~~~~~~g~v~~~~  131 (210)
                      +..+++..++..+.+ ..+.++++.||.-+-  ..+..+++.....++  .+....+..      .+...+++|.+..+.
T Consensus       110 g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~~~~v~~~~  187 (307)
T d1yp2a2         110 GTADAVRQYLWLFEEHTVLEYLILAGDHLYR--MDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFA  187 (307)
T ss_dssp             SHHHHHHHTHHHHTTSCCSEEEEECSCEECC--CCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEE
T ss_pred             chhHHHHHhHHhhhccccceEEEecCcceec--cchhhhhhhhhhccccceEEEEecccccccccceEEECCCCcEEEEE
Confidence            347788888888763 236678888887443  345677776665543  222222211      123345567665433


Q ss_pred             CccC-------------e-----------eee-cCCcccChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecCC
Q 028320          132 DRKT-------------L-----------WEM-QTPQVIKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSY  185 (210)
Q Consensus       132 ~r~~-------------~-----------~~~-~~P~~f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~v~~v~~~~  185 (210)
                      +...             +           ... ..-+.|....|...+........ +.++....+...|.++...+.+.
T Consensus       188 Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i~~li~~g~~v~~~~~~g  267 (307)
T d1yp2a2         188 EKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDG  267 (307)
T ss_dssp             ESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECCS
T ss_pred             ECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHHHHHHHCCCcEEEEEeCC
Confidence            2100             0           000 01123455555544433221111 23443334445688888777777


Q ss_pred             CCccccChhhHHHHHH-Hhh
Q 028320          186 TNIKVTTPDDLLIAER-ILN  204 (210)
Q Consensus       186 ~~~dIdt~~Dl~~a~~-~~~  204 (210)
                      .+.||+|++||..|.. +++
T Consensus       268 ~W~Digt~~~~~~a~~~ll~  287 (307)
T d1yp2a2         268 YWEDIGTIEAFYNANLGITK  287 (307)
T ss_dssp             CCEECSSHHHHHHHHHGGGC
T ss_pred             eEEECcCHHHHHHHHHHHhc
Confidence            8999999999999974 444

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.19  E-value=1.5e-10  Score=89.02  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=38.7

Q ss_pred             CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHH
Q 028320            1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK   46 (210)
Q Consensus         1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~   46 (210)
                      .||+|+|++|+|||+|+++.+.+++ +++|+|++++.. +.+++..
T Consensus        23 ~PK~Ll~i~gkplI~~~i~~l~~~g-i~~i~iv~gy~~-~~i~~~~   66 (259)
T d1tzfa_          23 KPKPMVEIGGKPILWHIMKMYSVHG-IKDFIICCGYKG-YVIKEYF   66 (259)
T ss_dssp             CCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTH-HHHHHHH
T ss_pred             CCccceEECCEEHHHHHHHHHHHcC-CCeeeeccchhH-HHHHHHH
Confidence            5999999999999999999999986 899999999986 4555544

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=2.2e-08  Score=77.96  Aligned_cols=100  Identities=14%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             CCccceec-CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHccc-CCCC
Q 028320            1 MPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD-FNSE   78 (210)
Q Consensus         1 ~~K~l~~i-~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~-~~~d   78 (210)
                      +||||+|+ +|+|||+|+++++......+.++|+++... ..+.+. ...+..+.+...+.+...++..++..+. ...+
T Consensus        24 ~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~-~~~~~~-~~~~~~ii~E~~~~~t~~a~~~~~~~~~~~~~~  101 (268)
T d2cu2a2          24 RPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQ-EAVARP-YADGIRLLLEPLGRDTAGAVLLGVAEALKEGAE  101 (268)
T ss_dssp             BCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG-HHHHGG-GCSSSEEEEESSCCHHHHHHHHHHHHHHHHTCS
T ss_pred             CCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHH-HHHhhh-hccccceeeeeecCCcccchhhHHHHHhccCCc
Confidence            49999997 679999999999987656788999988765 222221 1122333333444455666666654442 3467


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHHHH
Q 028320           79 LVCIHDSARPLVLSKDVQKVLMDA  102 (210)
Q Consensus        79 ~vl~~~~d~Pli~~~~i~~~i~~~  102 (210)
                      .++++.||.++.........+...
T Consensus       102 ~vlvl~~D~~~~~~~~~~~~i~~~  125 (268)
T d2cu2a2         102 RLLVLPADHYVGDDEAYREALATM  125 (268)
T ss_dssp             EEEEEESSCEESCHHHHHHHHHHH
T ss_pred             eeEEEecchhhcccHHHHHHHHHH
Confidence            899999999999998887776654

>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MM2497-like
domain: Hypothetical protein MM2497
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.63  E-value=2.9e-07  Score=68.80  Aligned_cols=149  Identities=14%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC
Q 028320           12 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL   91 (210)
Q Consensus        12 pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~   91 (210)
                      -|+.++++.+.+++ ++.++++++.....   +..  .+..+  ..++.+..+++.++++.   .++.++++.+|.|.++
T Consensus        31 ~ml~~tl~~l~~~~-~~~v~~vs~~~~~~---~~~--~~~~~--~~~~~~L~~al~~a~~~---~~~~vliig~DlP~L~   99 (208)
T d2i5ea1          31 LMLNQVISSLKGAG-IEQVDILSPSVYGL---EEM--TEARV--LLDEKDLNEALNRYLKE---AEEPVLIVMADLPLLS   99 (208)
T ss_dssp             HHHHHHHHHHHHTT-CSEEEEEESSCTTC---SSC--CSSEE--EECCSCHHHHHHHHHHH---CCSCEEEECSCCTTCC
T ss_pred             HHHHHHHHHHHhCC-CcEEEEEcCcHHHH---HHh--hcCCc--ccCCCCHHHHHHHHHhc---CCCCEEEecCCcCcCC
Confidence            48999999999875 78888888766421   111  11222  22334456677777654   3578899999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHH
Q 028320           92 SKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV  171 (210)
Q Consensus        92 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~  171 (210)
                      ++.|+.+++    ..+.+...|..+       +|.-.-...+...    .+..|....+.+              .....
T Consensus       100 ~~~l~~a~~----~~~d~Vi~Pa~D-------GG~~~l~~~~~~~----~~~~~g~~S~~~--------------h~~~a  150 (208)
T d2i5ea1         100 PEHIKEISS----TEKDVCIVPGKG-------GGTNALFIKNPSK----YRVKYYGSSFLT--------------HCSIA  150 (208)
T ss_dssp             HHHHHHHTT----CSSSEEEEECGG-------GCEEEEEESCGGG----CCCCCSSSHHHH--------------HHHHH
T ss_pred             HHHHHHHHh----cCCcEEEEecCC-------CCcceeeecCCcc----cCcccCcchHHH--------------HHHHH
Confidence            999998764    233344455443       2321111111000    011122111111              12233


Q ss_pred             HhCCCCeEEEecCCCCccccChhhHHHHH
Q 028320          172 EHLKHPVYITEGSYTNIKVTTPDDLLIAE  200 (210)
Q Consensus       172 ~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~  200 (210)
                      .+.|..+..+......+|||||+||..+.
T Consensus       151 ~~~gl~~~~~~~~~l~~DIDtp~DL~~ll  179 (208)
T d2i5ea1         151 TDSGQDFEIYDSFMAGTDIDEPEDLVELL  179 (208)
T ss_dssp             HTTTCCEEECCCTTTTCCCCSHHHHHHHH
T ss_pred             HHCCCcEEEecCcccccCCCCHHHHHHHH
Confidence            44666777777677899999999997653

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0064  Score=43.95  Aligned_cols=97  Identities=11%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             cCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC---CcEEEecCCccHHHHHHHHHHcccCCCCEEEEEe
Q 028320            8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHD   84 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~---~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~   84 (210)
                      .+....|..+++++.+....++++||.+....+..+.+++.++   ..+.......+...+.-.|++.+.  .|+|+++|
T Consensus        12 yn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~--ge~i~~lD   89 (265)
T d1omza_          12 YNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVE--TNAVLMVD   89 (265)
T ss_dssp             SSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCTTCC--SSEEEEEC
T ss_pred             CCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEecCCCCchhhhhhhHHhCC--cCEEEEeC
Confidence            4677889999999988776777777765543222333333332   223333322222334445665554  79999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCC
Q 028320           85 SARPLVLSKDVQKVLMDALRVGA  107 (210)
Q Consensus        85 ~d~Pli~~~~i~~~i~~~~~~~~  107 (210)
                      +|-- +.++.++.+++.+...+.
T Consensus        90 ~D~~-~~~~~l~~l~~~~~~~~~  111 (265)
T d1omza_          90 DDTL-ISAQDLVFAFSIWQQFPD  111 (265)
T ss_dssp             TTEE-ECHHHHHHHHHHHTTSTT
T ss_pred             cccC-CCHHHHHHHHHHHHhCCC
Confidence            9976 589999999998876543

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=91.15  E-value=1.6  Score=34.12  Aligned_cols=90  Identities=14%  Similarity=0.080  Sum_probs=56.4

Q ss_pred             ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-------hcCCcEEE--------ecCCccH--HHHHHHHHHccc
Q 028320           12 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-------KINVDLKF--------SLPGKER--QDSVYSGLQEVD   74 (210)
Q Consensus        12 pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-------~~~~~v~~--------~~~~~~~--~~si~~~l~~~~   74 (210)
                      +++..+++.+...+..+.|+|+-++.+ +...++.+       ..+..+..        ...|++.  ..++..|+... 
T Consensus        13 ~il~~~v~~~a~~P~~~eIvVvDdsSd-Dtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~~A~~~g~~~a-   90 (381)
T d2bo4a1          13 EVLLHNVRVAAAHPRVHEVLCIGYERD-QTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEET-   90 (381)
T ss_dssp             HHHHHHHHHHHHSTTCCEEEEEESSCC-HHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhCCCeeEEEEEcCCCC-CcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHHHHHHHHHHHHhC-
Confidence            689999998888887888888755554 32222211       11222211        1113322  23344444444 


Q ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320           75 FNSELVCIHDSARPLVLSKDVQKVLMDALR  104 (210)
Q Consensus        75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~  104 (210)
                       +.|+++++|||.=-.+++.+..++..+.+
T Consensus        91 -~gd~lvflDADl~~~~pe~i~~L~~~i~~  119 (381)
T d2bo4a1          91 -QWERIHFYDADITSFGPDWITKAEEAADF  119 (381)
T ss_dssp             -CCSEEEECCTTCSSCCHHHHHHHHHHHHT
T ss_pred             -CCCEEEEEcCCcCcCCHHHHHHHHHHHhh
Confidence             37999999999877889999999988764

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.86  E-value=1.2  Score=33.49  Aligned_cols=95  Identities=16%  Similarity=0.094  Sum_probs=61.3

Q ss_pred             ehHHHHHHHHhcCCCC---CeEEEEeCCCChH----HHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCCEEEE
Q 028320           12 PIALYSFYTFSRMVEV---KEIVVVCDPSYSD----IFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCI   82 (210)
Q Consensus        12 pli~~~i~~~~~~~~~---~~ivVv~~~~~~~----~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl~   82 (210)
                      ..|..+++++.+...-   .+||||=+....+    .+.+..+.+..++.++..  ..+.+.+.-.|++...  .+++++
T Consensus        36 ~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a~--gd~i~f  113 (328)
T d1xhba2          36 STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR--GQVITF  113 (328)
T ss_dssp             HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred             HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhhh--cceeee
Confidence            3688889887653222   3677764322111    233445555555666542  3344666667888865  789999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320           83 HDSARPLVLSKDVQKVLMDALRVGAAV  109 (210)
Q Consensus        83 ~~~d~Pli~~~~i~~~i~~~~~~~~~~  109 (210)
                      +++|.= ++++.++.+++.+...+..+
T Consensus       114 lD~D~~-~~p~~l~~l~~~~~~~~~~~  139 (328)
T d1xhba2         114 LDAHCE-CTAGWLEPLLARIKHDRRTV  139 (328)
T ss_dssp             EESSEE-ECTTCHHHHHHHHHHCTTEE
T ss_pred             cCcccc-cChhHHHHHHHHHhcCCCeE
Confidence            999986 48999999999887766543

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.52  E-value=3.3  Score=29.34  Aligned_cols=94  Identities=7%  Similarity=0.015  Sum_probs=60.8

Q ss_pred             cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhcC--CcEEEecC----------CccHHHHHHHHHHccc
Q 028320            8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKIN--VDLKFSLP----------GKERQDSVYSGLQEVD   74 (210)
Q Consensus         8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~~--~~v~~~~~----------~~~~~~si~~~l~~~~   74 (210)
                      .++...|..++++++....- -+|+||-+... +...++++.+.  .++.+...          ..+...+.-.|++...
T Consensus        10 yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~-d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a~   88 (255)
T d1qg8a_          10 YNKSDYVAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE   88 (255)
T ss_dssp             SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC-ccHHHHHHHhhhhcccccccccccccccccccchhcccccccccccc
Confidence            36778899999998654321 25666644333 45566666542  23444321          2223445566787765


Q ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320           75 FNSELVCIHDSARPLVLSKDVQKVLMDALRV  105 (210)
Q Consensus        75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~  105 (210)
                        .++++++++|-=+ .|+-++.+++.+...
T Consensus        89 --g~~i~~lD~Dd~~-~p~~l~~~~~~~~~~  116 (255)
T d1qg8a_          89 --GEYITYATDDNIY-MPDRLLKMVRELDTH  116 (255)
T ss_dssp             --CSEEEEEETTEEE-CTTHHHHHHHHHHHC
T ss_pred             --ccccccccccccc-ccchHHHHHHHHHhC
Confidence              7999999999755 678899999988665