Citrus Sinensis ID: 028321

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MLINALSLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccHHHHHHHHHHcccccEEEccEEEEEEccccccccEEEEEEEEcccccccccccEEEEEEEEEEEEcccEEEEEEEEEEEEccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEccEEEEEEcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccEEEEEEcHHHHHHHHHHHcccccEEEcEEEEEEEEEccccccEEEEEEEEEccHHHHHccccEEEEEEEEEEccccEEEEEEEEEEEccccccHHHHHHHcHHHcccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
MLINALSLRRLWICLKWQvglegcnmgepidlvkldgtwrlqytsapdVLVLFEAAarlpffkvgqifqkfecrdksdggvicnvvrwsvppllekeegatlvVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQaliapailprsFLSLQILQFIRAFKaqipvtnttpgrrsvgglYYLSyldnnmllgravggggvfvftkaqplel
Flexible Loop (DISEMBL)
mlinalslRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFEcrdksdggviCNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFkaqipvtnttpgrrsvGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Low Complexity Region (SEG)
MLINALSLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAvggggvfvfTKAQPLEL
Disordered region (IsUnstruct)
**INALSLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTK******
Disordered Region (DISOPRED)
*******LRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQP***
Disordered Region (DISEMBL)
MLINALSLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Disordered Region (DISPRO)
MLINALSLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLINALSLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q8W4F1	284	Probable plastid-lipid-as	yes	no	0.914	0.676	0.822	2e-90
O82291	376	Probable plastid-lipid-as	no	no	0.747	0.417	0.276	9e-05
Q94KU5	360	Plastid lipid-associated	N/A	no	0.747	0.436	0.292	0.0002
Q9LW57	284	Probable plastid-lipid-as	no	no	0.676	0.5	0.285	0.0003

>sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana GN=PAP10 PE=1 SV=1

 Score =  331 bits (849), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 179/192 (93%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SD
Sbjct: 93  VTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSD 152

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
           GG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALI
Sbjct: 153 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALI 212

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
           APAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGG
Sbjct: 213 APAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGG 272

Query: 199 VFVFTKAQPLEL 210
           VFVFTK+QPLEL
Sbjct: 273 VFVFTKSQPLEL 284

Arabidopsis thaliana (taxid: 3702)

>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 24/181 (13%)

Query: 35  LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 94
           LDG W L YT+  +++ L  AA   P  KV  I Q  +  +     +I N    S P   
Sbjct: 201 LDGNWVLLYTAFSELIPLL-AAGSTPLLKVKSISQSIDTNNL----IIDNSTTLSSP--- 252

Query: 95  EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ---------ALIAPAILPR 145
                 +   +A F+V S   I + F+E T++   I   +            I+ ++L +
Sbjct: 253 --FADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQ 310

Query: 146 SFLSLQIL--QFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT 203
           S   LQ +     RA   Q P+    PG R    L   +YLD ++ + R  G GG+FV  
Sbjct: 311 SLNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLT-TYLDKDLRISR--GDGGLFVLA 367

Query: 204 K 204
           +
Sbjct: 368 R 368

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 24/181 (13%)

Query: 35  LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 94
           LDG W L YT+  ++L L  AA   P  KV  I Q  + +  S    I N    S P   
Sbjct: 185 LDGNWVLLYTAFSELLPLL-AAGSTPLLKVKSISQSIDTKSLS----IDNSTTLSSP--- 236

Query: 95  EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR----SFL-- 148
                 +   +A F+V +   I + F+E T++   I   +    +  +  +    SFL  
Sbjct: 237 --FADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLKQ 294

Query: 149 SLQILQFI-----RAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT 203
           SL  LQ +     RA   Q P+    PG R    L   +YLD ++ + R  G GG+FV  
Sbjct: 295 SLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWL-LTTYLDKDLRISR--GDGGLFVLA 351

Query: 204 K 204
           +
Sbjct: 352 R 352

Brassica campestris (taxid: 3711)

>sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 40/182 (21%)

Query: 27  GEPIDLV----KLDGTWRLQYTSAPDVLVLFEAAARLPFFK-----VGQIFQKFECRDKS 77
           G P+DL     KL G WRL Y+SA     L  +   LP  +     +GQ+FQ+ +   K 
Sbjct: 123 GGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK- 181

Query: 78  DGGVICNV---VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL 134
           D   I  V     W  PPL      AT  ++ KF+++    I + FE+ TV+      ++
Sbjct: 182 DFDNIAEVELGAPWPFPPL-----EATATLAHKFELLGTCKIKITFEKTTVKTSGNLSQI 236

Query: 135 QALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAV 194
                P  LP SF                P +N  PG     G + ++Y+D+ M + R  
Sbjct: 237 PPFDIPR-LPDSFR---------------PSSN--PGT----GDFEVTYVDDTMRITRGD 274

Query: 195 GG 196
            G
Sbjct: 275 RG 276

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
297824781	283	plastid-lipid associated protein pap [Ar	0.914	0.678	0.828	4e-89
18407205	284	putative plastid-lipid-associated protei	0.914	0.676	0.822	1e-88
21553852	284	unknown [Arabidopsis thaliana]	0.914	0.676	0.822	1e-88
255548157	285	structural molecule, putative [Ricinus c	0.914	0.673	0.808	8e-88
388510882	271	unknown [Lotus japonicus]	0.895	0.693	0.810	1e-83
356521622	276	PREDICTED: probable plastid-lipid-associ	0.895	0.681	0.801	4e-83
449453338	278	PREDICTED: probable plastid-lipid-associ	0.904	0.683	0.759	2e-79
225453694	278	PREDICTED: probable plastid-lipid-associ	0.890	0.672	0.778	1e-78
88175353	279	fibrillin 8 [Coffea canephora]	0.904	0.681	0.75	1e-78
242039135	285	hypothetical protein SORBIDRAFT_01g01745	0.876	0.645	0.747	8e-74

>gi|297824781|ref|XP_002880273.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata] gi|297326112|gb|EFH56532.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata]

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 159/192 (82%), Positives = 180/192 (93%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V +EG N GE IDLVKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SD
Sbjct: 92  VTVEGFNGGEEIDLVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSD 151

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
           GG+I NVV+WS+P LLE++EGATLVV+AKFD V  RNIYLQFEE++V+NI I+E+LQALI
Sbjct: 152 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVCSRNIYLQFEEISVRNININEQLQALI 211

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
           APAILPRSFLSLQ+LQFIR FKAQIPVT T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGG
Sbjct: 212 APAILPRSFLSLQLLQFIRTFKAQIPVTATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGG 271

Query: 199 VFVFTKAQPLEL 210
           VFVFTK+QPLEL
Sbjct: 272 VFVFTKSQPLEL 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407205|ref|NP_566091.1| putative plastid-lipid-associated protein 10 [Arabidopsis thaliana] gi|75162466|sp|Q8W4F1.1|PAP10_ARATH RecName: Full=Probable plastid-lipid-associated protein 10, chloroplastic; AltName: Full=Fibrillin-10; Flags: Precursor gi|17065042|gb|AAL32675.1| Unknown protein [Arabidopsis thaliana] gi|20197139|gb|AAC34229.2| Expressed protein [Arabidopsis thaliana] gi|20259994|gb|AAM13344.1| unknown protein [Arabidopsis thaliana] gi|330255676|gb|AEC10770.1| putative plastid-lipid-associated protein 10 [Arabidopsis thaliana]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 179/192 (93%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SD
Sbjct: 93  VTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSD 152

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
           GG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALI
Sbjct: 153 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALI 212

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
           APAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGG
Sbjct: 213 APAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGG 272

Query: 199 VFVFTKAQPLEL 210
           VFVFTK+QPLEL
Sbjct: 273 VFVFTKSQPLEL 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553852|gb|AAM62945.1| unknown [Arabidopsis thaliana]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 179/192 (93%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SD
Sbjct: 93  VTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSD 152

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
           GG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALI
Sbjct: 153 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALI 212

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
           APAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGG
Sbjct: 213 APAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGG 272

Query: 199 VFVFTKAQPLEL 210
           VFVFTK+QPLEL
Sbjct: 273 VFVFTKSQPLEL 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548157|ref|XP_002515135.1| structural molecule, putative [Ricinus communis] gi|223545615|gb|EEF47119.1| structural molecule, putative [Ricinus communis]

 Score =  328 bits (841), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 156/193 (80%), Positives = 177/193 (91%), Gaps = 1/193 (0%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V LEG N+G PIDLVKLDGTWRLQYTSAPDVL+L E++ARLPF +VGQIFQKFECRD+S 
Sbjct: 93  VSLEGYNVGAPIDLVKLDGTWRLQYTSAPDVLILLESSARLPFLQVGQIFQKFECRDQSS 152

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
           GG+I NVVRWS+P + E+++GATL+VSAKFDVVS RNIYLQFEE+++QNI ISEE+QALI
Sbjct: 153 GGIIRNVVRWSIPTVFEEQDGATLLVSAKFDVVSARNIYLQFEEISIQNIKISEEVQALI 212

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNT-TPGRRSVGGLYYLSYLDNNMLLGRAVGGG 197
           APAILPRSF SLQILQFIRAFKAQIPV N   PGRR+VGGLYYLSYLDNNM+LGRAVGGG
Sbjct: 213 APAILPRSFFSLQILQFIRAFKAQIPVRNPGNPGRRAVGGLYYLSYLDNNMILGRAVGGG 272

Query: 198 GVFVFTKAQPLEL 210
           G+FVFTKAQPL+L
Sbjct: 273 GIFVFTKAQPLDL 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510882|gb|AFK43507.1| unknown [Lotus japonicus]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 177/190 (93%), Gaps = 2/190 (1%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V +EGCN G+PI+L KLDGTWRLQYTSA DVLVLFEAAARLPFF+VGQIFQKFECRD+S+
Sbjct: 83  VNVEGCNKGDPINLNKLDGTWRLQYTSAFDVLVLFEAAARLPFFQVGQIFQKFECRDESN 142

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
           GGVI NVVRWSVP LLE+++GATL+VSAKF VVSVRNIY QF+E+T+Q+I I+E+LQALI
Sbjct: 143 GGVIRNVVRWSVPNLLEEQDGATLLVSAKFTVVSVRNIYPQFQEITLQDININEQLQALI 202

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
           APA+LPRS+LSLQILQF+RAFKAQIPV +  PGR+SVGGLYYLSYLD+NMLLGRAVGGGG
Sbjct: 203 APALLPRSYLSLQILQFLRAFKAQIPVRD--PGRQSVGGLYYLSYLDDNMLLGRAVGGGG 260

Query: 199 VFVFTKAQPL 208
           VFVFT+AQ L
Sbjct: 261 VFVFTRAQSL 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521622|ref|XP_003529453.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Glycine max]

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/191 (80%), Positives = 175/191 (91%), Gaps = 3/191 (1%)

Query: 19  VGLEGCNMG-EPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKS 77
           V LEGCN+G  PI+L  LDGTWRLQYTSA DVL+L +AAA LPFF+VGQIFQKFECRD+S
Sbjct: 87  VSLEGCNIGSHPINLSNLDGTWRLQYTSASDVLILLQAAATLPFFQVGQIFQKFECRDQS 146

Query: 78  DGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQAL 137
           +GGVI NVVRWS+P LLE++EGATL+VSAKF+VVSVRNIYLQF+E+T+Q+I ISEELQAL
Sbjct: 147 NGGVIRNVVRWSIPNLLEEQEGATLLVSAKFNVVSVRNIYLQFQEITIQDINISEELQAL 206

Query: 138 IAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGG 197
           IAPAILPRSF+SLQILQF+R FKAQIPV +  PGR+SVGGLYYLSYLD+NMLLGRAVGGG
Sbjct: 207 IAPAILPRSFISLQILQFLRTFKAQIPVRD--PGRQSVGGLYYLSYLDDNMLLGRAVGGG 264

Query: 198 GVFVFTKAQPL 208
           GVFVFT+AQ L
Sbjct: 265 GVFVFTRAQSL 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453338|ref|XP_004144415.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cucumis sativus] gi|449500056|ref|XP_004160991.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cucumis sativus]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/191 (75%), Positives = 170/191 (89%), Gaps = 1/191 (0%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V +E  +MG PIDL+KLDGTWRLQYTSAPDVL+L EAA RLPFF++GQIFQKFEC+D S+
Sbjct: 88  VNVEAYSMGLPIDLMKLDGTWRLQYTSAPDVLILLEAADRLPFFQIGQIFQKFECQDSSN 147

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
            G++ NVVRWS+P LLE++EGATL+VSAKF VVS+RNIYL+FEE++VQNI ISE+LQALI
Sbjct: 148 EGIVRNVVRWSIPSLLEEQEGATLLVSAKFSVVSLRNIYLEFEEISVQNIKISEQLQALI 207

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
           APAILPRSFLSLQILQF+R+F+  +PV N+    R VGGLYYLSYLD NMLLGRAVGGGG
Sbjct: 208 APAILPRSFLSLQILQFLRSFQVGVPVRNSGSS-RGVGGLYYLSYLDGNMLLGRAVGGGG 266

Query: 199 VFVFTKAQPLE 209
           VFVFTKAQPL+
Sbjct: 267 VFVFTKAQPLQ 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453694|ref|XP_002270341.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic [Vitis vinifera] gi|296089046|emb|CBI38749.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 166/190 (87%), Gaps = 3/190 (1%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V +E  N G PIDL KLDGTWRLQYTSAPDVLVL E+AAR  FF+VGQIFQKFEC+++S 
Sbjct: 91  VNVEEYNAGVPIDLGKLDGTWRLQYTSAPDVLVLLESAARFSFFQVGQIFQKFECQNQSK 150

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
            GV+ NVVRWS+PPLLE++EGATL+VSAKF VVS RNIYLQFEE+++Q+I ISEELQALI
Sbjct: 151 EGVVRNVVRWSIPPLLEEQEGATLLVSAKFSVVSARNIYLQFEEISIQSINISEELQALI 210

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
           APAILPRSFLSLQILQFIR FKA+IPV N   GRRSVGGLYYLSYLD NMLLGRA   GG
Sbjct: 211 APAILPRSFLSLQILQFIRTFKAEIPVRNQ--GRRSVGGLYYLSYLDANMLLGRA-AAGG 267

Query: 199 VFVFTKAQPL 208
           +FVFT+AQPL
Sbjct: 268 IFVFTRAQPL 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88175353|gb|ABD39695.1| fibrillin 8 [Coffea canephora]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 167/192 (86%), Gaps = 2/192 (1%)

Query: 19  VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
           V +E  + GE IDL +LDGTWRLQYTSAPDVL+LFE+A+RLPFF+VGQ+FQKFEC+D+S+
Sbjct: 90  VSVEAFDAGEAIDLGELDGTWRLQYTSAPDVLILFESASRLPFFQVGQVFQKFECQDESN 149

Query: 79  GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
           GGV+ N+V+WS+P LLE++EGATL+VSAKF VVS RNIY QFEE+    I ISEELQALI
Sbjct: 150 GGVVRNIVKWSIPSLLEEQEGATLLVSAKFSVVSSRNIYFQFEEIAFNKINISEELQALI 209

Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
           APAILPRSF+SLQILQFIRAFKA+ PV N  PGR SVGGLYYLSYLD  MLLGRAVGGGG
Sbjct: 210 APAILPRSFISLQILQFIRAFKAEFPVRN--PGRNSVGGLYYLSYLDRYMLLGRAVGGGG 267

Query: 199 VFVFTKAQPLEL 210
           VFVFT+AQ + L
Sbjct: 268 VFVFTRAQAIVL 279

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039135|ref|XP_002466962.1| hypothetical protein SORBIDRAFT_01g017450 [Sorghum bicolor] gi|241920816|gb|EER93960.1| hypothetical protein SORBIDRAFT_01g017450 [Sorghum bicolor]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 139/186 (74%), Positives = 159/186 (85%), Gaps = 2/186 (1%)

Query: 23  GCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVI 82
           G   G P+DL  LDGTWRL YTSA DVLVLFEAA RLP  +VGQI+QKFEC+D+SDGG +
Sbjct: 101 GAGKGTPLDLAALDGTWRLCYTSASDVLVLFEAAERLPPLQVGQIYQKFECKDRSDGGTV 160

Query: 83  CNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAI 142
            NVVRWS+  LLE++EGATL+VSAKF V+S RNI+LQFEEV V+NI ISE+LQALIAPAI
Sbjct: 161 RNVVRWSIENLLEEQEGATLMVSAKFVVLSKRNIFLQFEEVAVENIKISEQLQALIAPAI 220

Query: 143 LPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVF 202
           LPRSFLSLQILQF++ F+AQ+PV    P RRS GGLYYLSYLD +MLLGR+VGGGGVFVF
Sbjct: 221 LPRSFLSLQILQFLKTFRAQVPVGG--PERRSPGGLYYLSYLDRDMLLGRSVGGGGVFVF 278

Query: 203 TKAQPL 208
           TKAQPL
Sbjct: 279 TKAQPL 284

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2041454	284	AT2G46910 [Arabidopsis thalian	0.914	0.676	0.776	2.1e-75

TAIR|locus:2041454 AT2G46910 [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 149/192 (77%), Positives = 170/192 (88%)

Query:    19 VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
             V +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SD
Sbjct:    93 VTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSD 152

Query:    79 GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
             GG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALI
Sbjct:   153 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALI 212

Query:   139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAXXXXX 198
             APAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+     
Sbjct:   213 APAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGG 272

Query:   199 XXXXTKAQPLEL 210
                 TK+QPLEL
Sbjct:   273 VFVFTKSQPLEL 284


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       201   0.00089  111 3  11 22  0.42    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.99u 0.11s 16.10t   Elapsed:  00:00:01
  Total cpu time:  15.99u 0.11s 16.10t   Elapsed:  00:00:01
  Start:  Fri May 10 14:11:38 2013   End:  Fri May 10 14:11:39 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0010287 "plastoglobule" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W4F1	PAP10_ARATH	No assigned EC number	0.8229	0.9142	0.6760	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_403662.1	annotation not avaliable (283 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.5__435__AT3G26710.1	annotation not avaliable (267 aa)			•	•					0.545
	fgenesh2_kg.3__2759__AT2G04039.1	annotation not avaliable (196 aa)			•	•					0.537
	fgenesh2_kg.4__831__AT2G28605.1	annotation not avaliable (240 aa)			•	•					0.526
	fgenesh2_kg.7__2771__AT4G15510.1	annotation not avaliable (286 aa)			•	•					0.520
	fgenesh2_kg.6__2339__AT5G23440.1	annotation not avaliable (182 aa)			•	•					0.516
	fgenesh2_kg.5__794__AT3G43540.1	annotation not avaliable (372 aa)			•	•					0.515
	scaffold_604173.1	annotation not avaliable (167 aa)			•	•					0.511
	scaffold_700251.1	annotation not avaliable (194 aa)			•						0.504
	fgenesh2_kg.6__2705__AT5G27560.1	annotation not avaliable (340 aa)			•	•					0.502
	fgenesh2_kg.5__361__AT3G26070.1	annotation not avaliable (242 aa)			•						0.502

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	8e-16

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 72.1 bits (177), Expect = 8e-16
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 23/172 (13%)

Query: 31  DLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSV 90
            L  L+G WRL YT++ ++L L  A  RLP  KVGQI+Q  +  + +    + N V +S 
Sbjct: 47  SLDLLNGKWRLLYTTSKELLPLL-ARGRLPLLKVGQIYQTIDVNNLT----VYNSVTFSG 101

Query: 91  PPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSL 150
           P         +  V AKF++ S + + ++FE   +                    + L  
Sbjct: 102 PLAE-----GSFSVRAKFEIRSPKRVQIRFERGVLG----------TPQLLKGSLTPLQ- 145

Query: 151 QILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVF 202
                IR   +Q+P+     G R+ G L   +YLD ++ + R   GG +FV 
Sbjct: 146 DTASNIRGISSQLPLPFPLSGDRAKGWL-ETTYLDEDLRISRG-DGGSLFVL 195

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	100.0
PF14869	133	DUF4488: Domain of unknown function (DUF4488)	81.89

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=100.00  E-value=5.9e-37  Score=254.15  Aligned_cols=175  Identities=31%  Similarity=0.511  Sum_probs=132.2

Q ss_pred             cChhhHHHHHHHHHHHHhcCCCC-CCCc-cCcCceEEEEeecCcchHHHHHhhhcCCceeecceeEEEEeeeCCCCceEE
Q 028321            6 LSLRRLWICLKWQVGLEGCNMGE-PIDL-VKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVIC   83 (210)
Q Consensus         6 ~~~~~~~~I~eli~~LE~~nPtp-P~~~-~lL~G~W~L~yTt~~~~~~ll~~~~~~p~~~~g~i~Q~id~~~~~~~~~v~   83 (210)
                      .+++++++|+++|++||++||++ |+++ ++|+|+|+|+|||+.+..+.++ .++.|.+.++++||+||+.    ++++.
T Consensus        20 ~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~-~~~~~~~~~~~v~Q~id~~----~~~~~   94 (198)
T PF04755_consen   20 ASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQ-RGRLPGVRVGRVFQTIDAD----NGRVE   94 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccc-ccccccccccceEEEEECC----CceEE
Confidence            46777899999999999999999 9986 9999999999999999886664 2456788899999999954    78999


Q ss_pred             EEEEecC-CCcccccCCcEEEEEEEEEEcCCceEEEEEEEEEeecccchHHHHHhhCCcCCccchhhHHHHHHH-hhhhh
Q 028321           84 NVVRWSV-PPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFI-RAFKA  161 (210)
Q Consensus        84 N~v~~~~-p~~~~~~~G~~~~v~a~~~~~~~~Rv~v~F~~~~l~~~~i~~~l~~~~~~~~~p~~~~~~~~~~~~-~~~~~  161 (210)
                      |+++|+. |..    +| ++.+.+++++.+++|+.++|+++.+++..+   ++..+++-  ....      ..+ +....
T Consensus        95 N~v~~~~~~~~----~~-~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~---l~~~l~~~--~~~~------~~v~~~~~~  158 (198)
T PF04755_consen   95 NVVELSGFPLL----EG-SVSVRASLEVRSPRRVEVTFERASLKPPSL---LKGVLGPL--KDAL------NNVPRGISD  158 (198)
T ss_pred             EEEEEeccCce----EE-EEEEEEEEEEccccEEEEEEEeeEEcccce---eeccchhh--hhhh------hhccccccc
Confidence            9999875 543    44 899999999999999999999999965433   11111000  0000      000 00112


Q ss_pred             cCccccCCCCCCCcceEEEEEEecCCeEEEeecCCCcEEEEE
Q 028321          162 QIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT  203 (210)
Q Consensus       162 ~~Pl~~~~~g~~~~~g~ld~tYLDedlRI~Rg~d~G~vFVl~  203 (210)
                      .+|++.+.++. .++||||||||||||||+||+ +|++|||.
T Consensus       159 ~~~~~~~~~~~-~~~g~l~~tYLDedlRI~Rg~-~G~~fVl~  198 (198)
T PF04755_consen  159 ELPVPLPLPGG-SPKGWLDTTYLDEDLRISRGN-KGSLFVLK  198 (198)
T ss_pred             ccccccccCCC-CCceEEEEEEECCCeEEEEcC-CCCEEEeC
Confidence            34444444433 478999999999999999995 99999984

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

>PF14869 DUF4488: Domain of unknown function (DUF4488)

Probab=81.89  E-value=19  Score=28.46  Aligned_cols=68  Identities=25%  Similarity=0.434  Sum_probs=44.8

Q ss_pred             CcCceEEEE-eecC-cchHHHHHhhhcCCceeecceeEEEEeeeCCCCceEEEEEEecCCCcccccCCcEEEEEEEEEEc
Q 028321           34 KLDGTWRLQ-YTSA-PDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVV  111 (210)
Q Consensus        34 lL~G~W~L~-yTt~-~~~~~ll~~~~~~p~~~~g~i~Q~id~~~~~~~~~v~N~v~~~~p~~~~~~~G~~~~v~a~~~~~  111 (210)
                      -|.|-|+++ |-+. .++.+-         +..+.++..+.     +++++.|+.-.  |.     .|+.+...+.|+..
T Consensus         2 ~l~GVWQ~c~~~~~~~~~~g~---------l~~~~~lKilS-----~Dgtf~Ni~~~--~~-----~~aiIt~~GtY~~~   60 (133)
T PF14869_consen    2 SLQGVWQLCHYVSESPEVPGK---------LKPSNVLKILS-----DDGTFVNITMI--PK-----SGAIITGYGTYEQP   60 (133)
T ss_pred             CceEEEEEEEEeecCcccCce---------EeecccEEEEc-----CCCcEEEEEEe--CC-----CCcEEEEeEEEEEc
Confidence            478999999 4443 332111         33456666565     47899999774  33     23688889999999


Q ss_pred             CCceEEEEEEE
Q 028321          112 SVRNIYLQFEE  122 (210)
Q Consensus       112 ~~~Rv~v~F~~  122 (210)
                      ++....-.-++
T Consensus        61 sD~~Y~E~IeK   71 (133)
T PF14869_consen   61 SDNIYVESIEK   71 (133)
T ss_pred             CCccceeeecc
Confidence            98855555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
4i95_A	142	Putative uncharacterized protein; lipocalin-like d	88.95
4gzv_A	142	Hypothetical protein; AN eight-stranded beta barre	86.57

>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A

Probab=88.95  E-value=5.2  Score=30.70  Aligned_cols=72  Identities=21%  Similarity=0.330  Sum_probs=53.0

Q ss_pred             ccCcCceEEEEeecCcchHHHHHhhhcCC-ceeecceeEEEEeeeCCCCceEEEEEEecCCCcccccCCcEEEEEEEEEE
Q 028321           32 LVKLDGTWRLQYTSAPDVLVLFEAAARLP-FFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDV  110 (210)
Q Consensus        32 ~~lL~G~W~L~yTt~~~~~~ll~~~~~~p-~~~~g~i~Q~id~~~~~~~~~v~N~v~~~~p~~~~~~~G~~~~v~a~~~~  110 (210)
                      ..-|.|-|+|+.-.+.+.        ..| .++.++.+..+.     +++++.|+.-.  |.     .|+.+...++|+.
T Consensus         9 ~~~L~GvWQ~C~y~s~~p--------d~~g~L~psn~lKIlS-----dDgtF~Ni~m~--~~-----~~aiIt~~GtY~~   68 (142)
T 4i95_A            9 PAHLQGIWQLCHYVSENP--------DIPGVLKPSNTFKVLS-----DDGRIVNFTIR--PG-----TDAIITGYGTYRQ   68 (142)
T ss_dssp             CCSCCEEEEEEEEECSST--------TSCCEEEEEEEEEEEC-----TTSEEEEEECC--TT-----SCCEEEEEEEEEE
T ss_pred             cccceeEeEEEEEecCCC--------CCceEeccCccEEEEc-----CCCcEEEEEEe--cC-----CCcEEEEeEEEEe
Confidence            357999999987665431        234 356678888776     57899999877  32     3468889999999


Q ss_pred             cCCceEEEEEEEE
Q 028321          111 VSVRNIYLQFEEV  123 (210)
Q Consensus       111 ~~~~Rv~v~F~~~  123 (210)
                      .++......-++.
T Consensus        69 ~SD~~Y~E~IeKn   81 (142)
T 4i95_A           69 ISAAAYKESIEKN   81 (142)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             cCCcceeeeeccc
Confidence            9998777766666

>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}

Probab=86.57  E-value=7.2  Score=30.06  Aligned_cols=73  Identities=19%  Similarity=0.286  Sum_probs=48.9

Q ss_pred             ccCcCceEEEEeecCcchHHHHHhhhcCCc-eeecceeEEEEeeeCCCCceEEEEEEecCCCcccccCCcEEEEEEEEEE
Q 028321           32 LVKLDGTWRLQYTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDV  110 (210)
Q Consensus        32 ~~lL~G~W~L~yTt~~~~~~ll~~~~~~p~-~~~g~i~Q~id~~~~~~~~~v~N~v~~~~p~~~~~~~G~~~~v~a~~~~  110 (210)
                      ..-|.|-|+|++-....        ...|. +..+..+..|.     +++++.|++-.  +.     .|+.+...++|+.
T Consensus         9 ~~~L~GvWQ~c~y~~~~--------~~~~~~l~~s~~~KIlS-----~DgtF~N~~m~--~~-----~~aiIt~yGtY~l   68 (142)
T 4gzv_A            9 AADLKGIWQLCHYVSES--------PDVPGALKPSNTFKVLS-----DDGRIVNFTII--PG-----ADAIITGYGTYKQ   68 (142)
T ss_dssp             SCCCCEEEEEEEEEESS--------TTSCCEEEEEEEEEEEC-----TTSEEEEEECC--TT-----SCCEEEEEEEEEE
T ss_pred             cccceEEeEEeeEeecC--------CCCCceEeecCceEEEC-----CCCcEEEEEEe--CC-----CCcEEEEeEEEEe
Confidence            46799999999433221        11232 45567788776     47899999853  22     2468889999999


Q ss_pred             cCCceEEEEEEEEE
Q 028321          111 VSVRNIYLQFEEVT  124 (210)
Q Consensus       111 ~~~~Rv~v~F~~~~  124 (210)
                      .+++.....-++..
T Consensus        69 ~SD~~Y~E~i~kni   82 (142)
T 4gzv_A           69 LTDDSYKESIEKNI   82 (142)
T ss_dssp             EETTEEEEEEEEES
T ss_pred             cCCCeeeeeecccc
Confidence            99986655555443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00