Citrus Sinensis ID: 028337

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEKQKLS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHcccccHHHEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccc
Coil and Loop (DISEMBL)
MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAIlnrpapplpelhlseEMVNEVAALIRTRVNDFLSVSqdmalgknsRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEKQKLS
Flexible Loop (DISEMBL)
mgsssdrlfKRQRTIHeilggglaadviLWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEKQKLS
Low Complexity Region (SEG)
MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTllslvssvlllliailflwakaaailNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEKQKLS
Disordered region (IsUnstruct)
***********QRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWIL******
Disordered Region (DISOPRED)
*****************ILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEF*S*************
Disordered Region (DISEMBL)
********FKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEKQKLS
Disordered Region (DISPRO)
**********RQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRK*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEKQKLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9M392	203	Reticulon-like protein B1	yes	no	0.914	0.945	0.552	1e-50
Q8GYH6	226	Reticulon-like protein B1	no	no	0.990	0.920	0.433	4e-45
Q9SUR3	275	Reticulon-like protein B1	no	no	0.961	0.734	0.366	9e-39
Q9FFS0	257	Reticulon-like protein B4	no	no	0.961	0.785	0.364	1e-38
O82352	255	Reticulon-like protein B5	no	no	0.919	0.756	0.404	1e-38
Q9LT71	200	Reticulon-like protein B1	no	no	0.761	0.8	0.462	2e-38
Q6DBN4	253	Reticulon-like protein B6	no	no	0.919	0.762	0.398	2e-38
Q9SUT9	271	Reticulon-like protein B2	no	no	0.961	0.745	0.351	5e-38
Q9SH59	255	Reticulon-like protein B3	no	no	0.919	0.756	0.373	3e-37
Q6NPD8	201	Reticulon-like protein B1	no	no	0.895	0.935	0.398	7e-37

>sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1

 Score =  199 bits (506), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 149/192 (77%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           M SSSD+LF R RTIHEILGGG+ ADV+LWR+KNV+VGI+ VT+A+W+VFE   YT+ +L
Sbjct: 1   MSSSSDKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTL 60

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
           +SSVLLLL++ILFLW+K+A+ILNRP+PPLPE  +SE M  E +  +R  VN  L VS D+
Sbjct: 61  ISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDI 120

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           A+ ++S L+ +VA+ L+L+S +G L DF TL +TS+++V+T+PA YERYED+I       
Sbjct: 121 AMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFI 180

Query: 181 YRKLRQLYVKID 192
             K R+LY++++
Sbjct: 181 CNKTRELYLRLE 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 138/210 (65%), Gaps = 2/210 (0%)

Query: 2   GSSSD-RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           GSSSD RL  RQ T+H+ +GGG AAD++LWRR+++++G+++++  AW++FE SG   LS+
Sbjct: 18  GSSSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSV 77

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
            S VLL++I I F+ A+ +A  NR    LPEL LSEEMVN  AA  R ++N  L ++ D+
Sbjct: 78  SSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDV 137

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
            +G + RLFF+V + LWL+S +G      TL Y   ++ +T+PALY +Y+  +DK     
Sbjct: 138 TVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTI 197

Query: 181 YRKLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           +R+L   Y  +DE  +S++  W L K K S
Sbjct: 198 HRRLSHHYKIVDENVISRL-SWSLSKDKDS 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  159 bits (403), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 131/202 (64%)

Query: 7   RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLL 66
           RLF R++ +H++LGGG  AD+ +W+ K ++ G+L    AAWVVFE   Y LL+L+  V++
Sbjct: 72  RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMI 131

Query: 67  LLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
           +++A+LFLW+ A   +N+  P +PE+H+ EE + ++A+ +R  +N   S  +++A G++ 
Sbjct: 132 VVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDL 191

Query: 127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
           + F      LW++S +GG  +FLTL Y +LV++ T+P  Y++YED +D        +L++
Sbjct: 192 KKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKK 251

Query: 187 LYVKIDEEFVSKVRKWILEKQK 208
            Y  +DE+ +SK+    L+ +K
Sbjct: 252 QYAVLDEKVLSKIPLGPLKNKK 273

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 130/206 (63%), Gaps = 4/206 (1%)

Query: 7   RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLL 66
           RLF R++ +H++LGGG  AD+ LWR K V+ G+L    A+WV+FE   Y LL+ +    +
Sbjct: 51  RLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAI 110

Query: 67  LLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
             +A LFLW+ A   +++  P +PE+H+ E+ + ++ + +R  +N  L++ +++A GK+ 
Sbjct: 111 FALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDV 170

Query: 127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
           + F  V   LW++S +G   +FLTL YT+ V++ T+P LYE+YED +D Y     R++++
Sbjct: 171 KKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKK 230

Query: 187 LYVKIDE----EFVSKVRKWILEKQK 208
            Y  +DE    + +SK+ +  L K+K
Sbjct: 231 QYAVLDEKVLRKVISKIPRGALNKKK 256

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 124/193 (64%)

Query: 7   RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLL 66
           R+F R++ +H++LGGG  ADV LWR K ++  +L V  A WV+FE   Y LLSL+  + +
Sbjct: 51  RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISI 110

Query: 67  LLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
           L +  LFLW+ A  ++N+ +P +PE+H+ EE    VA+ +R  +N    + + +ALG++ 
Sbjct: 111 LALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDL 170

Query: 127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
           + F  V + LW+IS VG   +FLTL Y   VI+ T+P LYE++ED +D  A    ++L++
Sbjct: 171 KKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQK 230

Query: 187 LYVKIDEEFVSKV 199
            YV  DE+ +SK+
Sbjct: 231 QYVVFDEKVLSKI 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 110/160 (68%)

Query: 16  HEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLW 75
           H+ LG G  AD++LWR +   V +L+ +   W +FER+GY LLS VS+VLLLL+AI FLW
Sbjct: 14  HQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLW 73

Query: 76  AKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALY 135
           AK+A +LNRP PP+P + + EE  N+ A  +R  +N  LS++ D+ + +N     +V+L 
Sbjct: 74  AKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLV 133

Query: 136 LWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDK 175
           LW IS+VG L + LTL Y  +++ L+ P +YE+Y+DHID+
Sbjct: 134 LWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDE 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 121/193 (62%)

Query: 7   RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLL 66
           RLF R++ +H++LGGGL ADV LWR K ++  +L V  A WV+FE   Y  LSLV  +L+
Sbjct: 51  RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILI 110

Query: 67  LLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
             +A LFL + A A +N+  P +PE+H+ EE    + + +R  +N    + + +ALG++ 
Sbjct: 111 FALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDL 170

Query: 127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
           + F  V   LW+IS VG   +FLTL Y   V++ T+P LYE++ED +D  A    ++L++
Sbjct: 171 KKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKK 230

Query: 187 LYVKIDEEFVSKV 199
            Y+  DE+ +SK+
Sbjct: 231 HYMVFDEKVLSKL 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  157 bits (397), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 128/202 (63%)

Query: 7   RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLL 66
           RLF R+R +H++LGGG  AD+ +W+ K ++ G+      AWV+FE   Y LL+L+  V++
Sbjct: 68  RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMI 127

Query: 67  LLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
           + +A+LFLW+ A   +++  P +PE+H+ EE + ++A+ +R  +N  +S  +++A G++ 
Sbjct: 128 VALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDI 187

Query: 127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
           + F      LW++S +GG   FLTL Y +LV++ T+P  Y++YED +D Y      +L++
Sbjct: 188 KKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKK 247

Query: 187 LYVKIDEEFVSKVRKWILEKQK 208
            Y  +D +  SK+ +  L+ +K
Sbjct: 248 QYAVLDAKVFSKIPRGPLKDKK 269

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 126/193 (65%)

Query: 7   RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLL 66
           RLF R++ +H++ GGG  AD+ LWR K V+ G+L     +W++FE   Y LL+L   + +
Sbjct: 47  RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISI 106

Query: 67  LLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
           L +A+LFLW+ A+  +++    +PE+H+ E++V ++A+ +R  +N   +V +D+A G++ 
Sbjct: 107 LALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDL 166

Query: 127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
           + F  V   LW++S VG   +FLTL Y + V++ T+P LYE+YED +D +     R++++
Sbjct: 167 KKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKK 226

Query: 187 LYVKIDEEFVSKV 199
            YV+ D + +SKV
Sbjct: 227 QYVEFDVKVLSKV 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1

 Score =  153 bits (387), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 119/188 (63%)

Query: 12  QRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAI 71
           + ++H+ +  G  AD+I+W+ +     +L  T   W +FE+ GY+    V +  LL + I
Sbjct: 2   EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61

Query: 72  LFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFR 131
           LFLWAK+A + NRP P LP L ++EE V  VA  IR  +N  L+V++++ +G+N++  FR
Sbjct: 62  LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121

Query: 132 VALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKI 191
           V++ LW +SFVG   +FLT+ Y  +V+ L +P LYERY+D ID+   L +R ++  Y KI
Sbjct: 122 VSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKI 181

Query: 192 DEEFVSKV 199
           DE  + K+
Sbjct: 182 DERLLQKI 189

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
225440594	209	PREDICTED: reticulon-like protein B12 [V	0.995	1.0	0.8	1e-92
255573897	209	3-beta-hydroxy-delta5-steroid dehydrogen	0.995	1.0	0.776	3e-88
356504301	209	PREDICTED: reticulon-like protein B12-li	0.995	1.0	0.785	1e-80
356496150	209	PREDICTED: reticulon-like protein B12-li	0.990	0.995	0.754	6e-79
449439934	209	PREDICTED: reticulon-like protein B12-li	0.995	1.0	0.709	7e-77
224140361	209	predicted protein [Populus trichocarpa]	0.995	1.0	0.742	7e-76
357468587	209	Reticulon-like protein B12 [Medicago tru	0.995	1.0	0.733	1e-74
297820146	203	reticulon family protein [Arabidopsis ly	0.914	0.945	0.567	1e-53
147823359	445	hypothetical protein VITISV_014341 [Viti	0.742	0.350	0.656	3e-52
15232423	203	reticulon-like protein B12 [Arabidopsis	0.914	0.945	0.552	6e-49

>gi|225440594|ref|XP_002273700.1| PREDICTED: reticulon-like protein B12 [Vitis vinifera] gi|297740256|emb|CBI30438.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 168/210 (80%), Positives = 193/210 (91%), Gaps = 1/210 (0%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           MGSS DRLF RQRT+H+ILGGGL ADV+LWR+KN+TVGILLVTLAAWVVFE SGYTLLSL
Sbjct: 1   MGSS-DRLFNRQRTVHQILGGGLVADVMLWRQKNLTVGILLVTLAAWVVFELSGYTLLSL 59

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
           VSSV LLL++ILFLWAK+AAILNRPAPPLP L+LSEE+VNEVAA IRTR N  L VSQD+
Sbjct: 60  VSSVFLLLVSILFLWAKSAAILNRPAPPLPNLYLSEEIVNEVAAFIRTRTNTLLQVSQDI 119

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           ALGK+SR+FF+VA YLWLIS VGGLTDFLTLGY SLVIVLT+PALYERYED+ID+Y ++G
Sbjct: 120 ALGKDSRMFFKVAAYLWLISVVGGLTDFLTLGYISLVIVLTVPALYERYEDYIDRYVMMG 179

Query: 181 YRKLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           YRKL+ LY+K+DEE +SKV+KWILEK+KLS
Sbjct: 180 YRKLQLLYMKLDEECISKVQKWILEKRKLS 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573897|ref|XP_002527867.1| 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis] gi|223532718|gb|EEF34498.1| 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/210 (77%), Positives = 183/210 (87%), Gaps = 1/210 (0%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           MGSS  RLF RQ T+HEILGGGL ADVILWR+KNVT GILL  LA+WVVFERSGYTLLSL
Sbjct: 1   MGSSG-RLFNRQTTVHEILGGGLVADVILWRQKNVTGGILLAALASWVVFERSGYTLLSL 59

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
            SSV+LLL+AILFLWAK+AAILNRPAPPLPELHLSEEM NEVA+ IRT VNDFLSVSQD+
Sbjct: 60  FSSVVLLLVAILFLWAKSAAILNRPAPPLPELHLSEEMANEVASFIRTHVNDFLSVSQDI 119

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           ALGK++RLFF+VA YL LIS VGGLTDF++L YTSLVI LT+PALYER+ED IDKY  +G
Sbjct: 120 ALGKDTRLFFKVAGYLLLISIVGGLTDFVSLCYTSLVITLTIPALYERHEDFIDKYVKMG 179

Query: 181 YRKLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           Y K +QLYV  D E + ++RKWILEKQKLS
Sbjct: 180 YEKSQQLYVNFDVECIGRIRKWILEKQKLS 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504301|ref|XP_003520935.1| PREDICTED: reticulon-like protein B12-like [Glycine max]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/210 (78%), Positives = 188/210 (89%), Gaps = 1/210 (0%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           MGSS DRLF RQR++HEILGGG  AD+ILWRRKN+TVGILLVTLA WVVFERSGYTLLSL
Sbjct: 1   MGSS-DRLFNRQRSLHEILGGGQVADLILWRRKNLTVGILLVTLAVWVVFERSGYTLLSL 59

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
           VS+VLLLLI ILFLWAK+AAILNRPAPPLP+LHLSEEM NEV   IRTRVND LSVSQD+
Sbjct: 60  VSNVLLLLIVILFLWAKSAAILNRPAPPLPQLHLSEEMANEVKTFIRTRVNDLLSVSQDI 119

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           ALGK+SRLF +VA YLW+IS +GGLTDFLTL YTSL IVLT+PA+YERYED+IDKY + G
Sbjct: 120 ALGKDSRLFLKVAAYLWIISIIGGLTDFLTLAYTSLFIVLTVPAIYERYEDYIDKYILKG 179

Query: 181 YRKLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           YRKL  L++KI+E++V+KV  WILEK+KLS
Sbjct: 180 YRKLCLLHLKINEQYVNKVHNWILEKKKLS 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496150|ref|XP_003516933.1| PREDICTED: reticulon-like protein B12-like [Glycine max]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 178/208 (85%)

Query: 3   SSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVS 62
            S DRLF RQR +HEILGGG  AD+ILWRRKN+TVGILLVTL  WVVFERSGYTLLSL+S
Sbjct: 2   GSFDRLFNRQRGLHEILGGGQVADLILWRRKNLTVGILLVTLGVWVVFERSGYTLLSLIS 61

Query: 63  SVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMAL 122
           +VLLLLI ILFLWAK+A ILNRPAPPLP+L LSEEM NE    I TRVND LSVSQD+AL
Sbjct: 62  NVLLLLIVILFLWAKSADILNRPAPPLPQLRLSEEMANEAKTFICTRVNDLLSVSQDIAL 121

Query: 123 GKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYR 182
           GK+SRLF +VA YLWLIS +GGLTDFLTL YTSL++VLT+PA+YERYED+ID Y + GYR
Sbjct: 122 GKDSRLFLKVAAYLWLISIIGGLTDFLTLAYTSLLLVLTVPAIYERYEDYIDMYILKGYR 181

Query: 183 KLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           KL  L+VKI+E +VSKV  WILEK+KLS
Sbjct: 182 KLCLLHVKINEGYVSKVHNWILEKKKLS 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439934|ref|XP_004137740.1| PREDICTED: reticulon-like protein B12-like [Cucumis sativus] gi|449483434|ref|XP_004156590.1| PREDICTED: reticulon-like protein B12-like [Cucumis sativus]

 Score =  292 bits (747), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 149/210 (70%), Positives = 186/210 (88%), Gaps = 1/210 (0%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           MGSS DRLF +QRT+HEI+GGG+ ADVILWRRKN+T+GILL+TLA W+VFER GYTLLSL
Sbjct: 1   MGSS-DRLFCKQRTLHEIVGGGIVADVILWRRKNLTMGILLITLATWLVFERCGYTLLSL 59

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
           +SSVLLLL+ I+FLWAK+A+ILNRPAPPLPEL+LSE+MVNE A+ IR+RVN FLSV+QD+
Sbjct: 60  ISSVLLLLVTIIFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSRVNAFLSVTQDI 119

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           A+GK+ RLFF+VA  LWLIS + GLTD +TL YTSL++VLT+PALYE+YED++D++AIL 
Sbjct: 120 AMGKDPRLFFKVAACLWLISVISGLTDMITLAYTSLLLVLTIPALYEKYEDYVDRHAILM 179

Query: 181 YRKLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           Y+KL Q YVK+DE  V   ++WILEK+KLS
Sbjct: 180 YKKLYQFYVKLDEMRVLTYQQWILEKEKLS 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140361|ref|XP_002323551.1| predicted protein [Populus trichocarpa] gi|222868181|gb|EEF05312.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 156/210 (74%), Positives = 184/210 (87%), Gaps = 1/210 (0%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           MGSSS RLF RQRT+HEI GGG  ADVILWR+ N+T+GILLVTL++WVVFERSGYTLLSL
Sbjct: 1   MGSSS-RLFNRQRTVHEIFGGGFVADVILWRQMNITIGILLVTLSSWVVFERSGYTLLSL 59

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
           VSSVLLLL  ILFLWAK+AAILNRPAPPLP LHLSEE V EVA+LIRTR+N  LS+SQD+
Sbjct: 60  VSSVLLLLAVILFLWAKSAAILNRPAPPLPRLHLSEETVTEVASLIRTRLNALLSISQDI 119

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           ALGK+++LF +VA YL LIS VGGLTDFLTLGY SL+IVLT+PALYERYED+ID+YA + 
Sbjct: 120 ALGKDTKLFLKVAAYLLLISVVGGLTDFLTLGYASLLIVLTIPALYERYEDYIDRYAEMV 179

Query: 181 YRKLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           ++K  QLY+K+D E + +V+ WILE+QKLS
Sbjct: 180 FKKSHQLYLKVDVECIGRVQNWILERQKLS 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468587|ref|XP_003604578.1| Reticulon-like protein B12 [Medicago truncatula] gi|355505633|gb|AES86775.1| Reticulon-like protein B12 [Medicago truncatula]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 184/210 (87%), Gaps = 1/210 (0%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           MGSS  RLF R+RT+HEILG G  AD+ILWRRKN TV ILLVTLAA+VVFERSGYTLLSL
Sbjct: 1   MGSSQ-RLFNRKRTLHEILGSGQVADLILWRRKNQTVMILLVTLAAFVVFERSGYTLLSL 59

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
           VS+VLLLL+ ILFLWAK+AAILNRPAPPLP+LHLS+EM NE+AA I+T+VN+  SVSQD+
Sbjct: 60  VSNVLLLLVVILFLWAKSAAILNRPAPPLPQLHLSDEMTNEMAAFIQTKVNNLFSVSQDI 119

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           ALGK+SRLF +VA+YLWLI+ VGGLTDFLTL YT L I+LT+PALYERYED+ID + +  
Sbjct: 120 ALGKDSRLFLKVAVYLWLIAVVGGLTDFLTLAYTGLFILLTIPALYERYEDYIDTFVLKC 179

Query: 181 YRKLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           Y KL QLY KI+E+++S+V+ WILEK+KLS
Sbjct: 180 YNKLCQLYRKINEKYISRVQNWILEKKKLS 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820146|ref|XP_002877956.1| reticulon family protein [Arabidopsis lyrata subsp. lyrata] gi|297323794|gb|EFH54215.1| reticulon family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 155/192 (80%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           MGSSSD+LF R+RT+HEILGGG+ ADV+LWR+KNV+VGI+ VT+A+W+VFE   YT+ +L
Sbjct: 1   MGSSSDKLFNRERTLHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTL 60

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
           +SSVLLLL++ILFLW+K+A+ILNRP+PPLPE  +SE M  E +  +R  VN  L VS D+
Sbjct: 61  ISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASICLRLHVNKLLQVSHDI 120

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           A+G++S L+ +VA+ L+LIS +G L DF TL +TS+++V+T+PA+YERYEDHID   +  
Sbjct: 121 AMGRDSELYTKVAVSLFLISLIGSLMDFQTLCHTSVLVVMTVPAVYERYEDHIDGSILFI 180

Query: 181 YRKLRQLYVKID 192
             K ++LY++++
Sbjct: 181 CNKAKELYLRVE 192

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823359|emb|CAN64200.1| hypothetical protein VITISV_014341 [Vitis vinifera]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/163 (65%), Positives = 129/163 (79%), Gaps = 7/163 (4%)

Query: 53  SGYTLLSLVSSVLLLLIAILFLWA-----KAAAILNRPAPPLPELHLSEEMVNEVAALIR 107
           SG T L      +L +  +L LW+     K  A+  RPAPPLP L+LSEE+VNEVAA IR
Sbjct: 285 SGDTDLCSCFEFVLCIELLLHLWSFVKFVKLVAL--RPAPPLPNLYLSEEIVNEVAAFIR 342

Query: 108 TRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYE 167
           TR N  L VSQD+ALGK+SR+FF+VA YLWLIS VGGLTDFLTLGY SLVIVLT+P LYE
Sbjct: 343 TRTNTLLQVSQDIALGKDSRMFFKVAAYLWLISVVGGLTDFLTLGYISLVIVLTVPXLYE 402

Query: 168 RYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEKQKLS 210
           RYED+ID+Y ++GYRKL+ LY+K+DEE +SKV+KWILEK+KLS
Sbjct: 403 RYEDYIDRYVMMGYRKLQLLYMKLDEECISKVQKWILEKRKLS 445

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232423|ref|NP_190980.1| reticulon-like protein B12 [Arabidopsis thaliana] gi|75183662|sp|Q9M392.1|RTNLL_ARATH RecName: Full=Reticulon-like protein B12; Short=AtRTNLB12 gi|6822058|emb|CAB70986.1| putative protein [Arabidopsis thaliana] gi|38454122|gb|AAR20755.1| At3g54120 [Arabidopsis thaliana] gi|38604026|gb|AAR24756.1| At3g54120 [Arabidopsis thaliana] gi|110738617|dbj|BAF01234.1| hypothetical protein [Arabidopsis thaliana] gi|332645669|gb|AEE79190.1| reticulon-like protein B12 [Arabidopsis thaliana]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 149/192 (77%)

Query: 1   MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSL 60
           M SSSD+LF R RTIHEILGGG+ ADV+LWR+KNV+VGI+ VT+A+W+VFE   YT+ +L
Sbjct: 1   MSSSSDKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTL 60

Query: 61  VSSVLLLLIAILFLWAKAAAILNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
           +SSVLLLL++ILFLW+K+A+ILNRP+PPLPE  +SE M  E +  +R  VN  L VS D+
Sbjct: 61  ISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDI 120

Query: 121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
           A+ ++S L+ +VA+ L+L+S +G L DF TL +TS+++V+T+PA YERYED+I       
Sbjct: 121 AMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFI 180

Query: 181 YRKLRQLYVKID 192
             K R+LY++++
Sbjct: 181 CNKTRELYLRLE 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.914	0.945	0.463	2.2e-43
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.880	0.742	0.347	1.3e-34
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.961	0.785	0.325	4.2e-31
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.919	0.756	0.352	7.9e-30
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.990	0.756	0.317	4.4e-29
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.885	0.925	0.357	1.5e-28
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.961	0.745	0.301	2.4e-28
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.971	0.906	0.294	3.6e-25
TAIR|locus:2090609	218	AT3G19460 "AT3G19460" [Arabido	0.538	0.518	0.280	6.9e-23
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.233	0.185	0.510	1.6e-16

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 89/192 (46%), Positives = 124/192 (64%)

Query:     1 MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXX 60
             M SSSD+LF R RTIHEILGGG+ ADV+LWR+KNV+VGI+ VT+A+W+VFE   YT    
Sbjct:     1 MSSSSDKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTL 60

Query:    61 XXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
                                   NRP+PPLPE  +SE M  E +  +R  VN  L VS D+
Sbjct:    61 ISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDI 120

Query:   121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
             A+ ++S L+ +VA+ L+L+S +G L DF TL +TS+++V+T+PA YERYED+I       
Sbjct:   121 AMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFI 180

Query:   181 YRKLRQLYVKID 192
               K R+LY++++
Sbjct:   181 CNKTRELYLRLE 192

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 65/187 (34%), Positives = 104/187 (55%)

Query:    23 LAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXX 82
             +AAD++LWRR+++++G+++++  AW++FE SG                            
Sbjct:    62 IAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFR 121

Query:    83 NRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFR-VALYLWLISF 141
             NR    LPEL LSEEMVN  AA  R ++N  L ++ D+ +G + RLFF+ V + LWL+S 
Sbjct:   122 NRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSA 181

Query:   142 VGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRK 201
             +G      TL Y   ++ +T+PALY +Y+  +DK     +R+L   Y  +DE  +S++  
Sbjct:   182 IGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRL-S 240

Query:   202 WILEKQK 208
             W L K K
Sbjct:   241 WSLSKDK 247

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 67/206 (32%), Positives = 116/206 (56%)

Query:     7 RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXX 66
             RLF R++ +H++LGGG  AD+ LWR K V+ G+L    A+WV+FE   Y           
Sbjct:    51 RLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAI 110

Query:    67 XXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
                             ++  P +PE+H+ E+ + ++ + +R  +N  L++ +++A GK+ 
Sbjct:   111 FALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDV 170

Query:   127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
             + F  V   LW++S +G   +FLTL YT+ V++ T+P LYE+YED +D Y     R++++
Sbjct:   171 KKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKK 230

Query:   187 LYVKIDEEF----VSKVRKWILEKQK 208
              Y  +DE+     +SK+ +  L K+K
Sbjct:   231 QYAVLDEKVLRKVISKIPRGALNKKK 256

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 68/193 (35%), Positives = 107/193 (55%)

Query:     7 RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXX 66
             R+F R++ +H++LGGG  ADV LWR K ++  +L V  A WV+FE   Y           
Sbjct:    51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISI 110

Query:    67 XXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
                             N+ +P +PE+H+ EE    VA+ +R  +N    + + +ALG++ 
Sbjct:   111 LALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDL 170

Query:   127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
             + F  V + LW+IS VG   +FLTL Y   VI+ T+P LYE++ED +D  A    ++L++
Sbjct:   171 KKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQK 230

Query:   187 LYVKIDEEFVSKV 199
              YV  DE+ +SK+
Sbjct:   231 QYVVFDEKVLSKI 243

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 66/208 (31%), Positives = 113/208 (54%)

Query:     1 MGSSSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXX 60
             M S   RLF R++ +H++LGGG  AD+ +W+ K ++ G+L    AAWVVFE   Y     
Sbjct:    66 MKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTL 125

Query:    61 XXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDM 120
                                   N+  P +PE+H+ EE + ++A+ +R  +N   S  +++
Sbjct:   126 LCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREI 185

Query:   121 ALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILG 180
             A G++ + F      LW++S +GG  +FLTL Y +LV++ T+P  Y++YED +D      
Sbjct:   186 ASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKA 245

Query:   181 YRKLRQLYVKIDEEFVSKVRKWILEKQK 208
               +L++ Y  +DE+ +SK+    L+ +K
Sbjct:   246 MIELKKQYAVLDEKVLSKIPLGPLKNKK 273

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 68/190 (35%), Positives = 106/190 (55%)

Query:    12 QRTIHEILGGGLAADVILWRRKNVTVGILLV--TLAAWVVFERSGYTXXXXXXXXXXXXX 69
             + ++H+ +  G  AD+I+W  KN   G LL+  T   W +FE+ GY+             
Sbjct:     2 EESVHQSIRFGSVADLIMW--KNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSV 59

Query:    70 XXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLF 129
                          NRP P LP L ++EE V  VA  IR  +N  L+V++++ +G+N++  
Sbjct:    60 VILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQL 119

Query:   130 FRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYV 189
             FRV++ LW +SFVG   +FLT+ Y  +V+ L +P LYERY+D ID+   L +R ++  Y 
Sbjct:   120 FRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYR 179

Query:   190 KIDEEFVSKV 199
             KIDE  + K+
Sbjct:   180 KIDERLLQKI 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 61/202 (30%), Positives = 109/202 (53%)

Query:     7 RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXX 66
             RLF R+R +H++LGGG  AD+ +W+ K ++ G+      AWV+FE   Y           
Sbjct:    68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMI 127

Query:    67 XXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
                             ++  P +PE+H+ EE + ++A+ +R  +N  +S  +++A G++ 
Sbjct:   128 VALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDI 187

Query:   127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
             + F      LW++S +GG   FLTL Y +LV++ T+P  Y++YED +D Y      +L++
Sbjct:   188 KKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKK 247

Query:   187 LYVKIDEEFVSKVRKWILEKQK 208
              Y  +D +  SK+ +  L+ +K
Sbjct:   248 QYAVLDAKVFSKIPRGPLKDKK 269

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 60/204 (29%), Positives = 99/204 (48%)

Query:     7 RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXX 66
             +LF RQR+IH I GGG  AD++LWR   +   +++     W + E   Y           
Sbjct:    22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASM 81

Query:    67 XXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNS 126
                             N   P +PE+ L E    ++A     R N  L+   D+A G++ 
Sbjct:    82 TSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDP 141

Query:   127 RLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
              LFF   + L+++S +G   +F+ L +   V + TLP +YE YED +D  A    RK+++
Sbjct:   142 PLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKK 201

Query:   187 LYVKIDEEFVSKVRKWILEKQKLS 210
             LY K+D   +SK+ +  ++ +K +
Sbjct:   202 LYKKVDTNVLSKIPRGTVKNKKFT 225

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090609 AT3G19460 "AT3G19460" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 32/114 (28%), Positives = 53/114 (46%)

Query:    25 ADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNR 84
             AD++LWR +   V +L+ +   W +FER+GY                           NR
Sbjct:     7 ADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNR 66

Query:    85 PAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALY-LW 137
             P PP+P + + EE  N+ A  +R  +N  LS++ D+ + +N     +V  + LW
Sbjct:    67 PLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVFFHHLW 120

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 25/49 (51%), Positives = 34/49 (69%)

Query:     7 RLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGY 55
             RLF R++ +H++LGGGL ADV LWR K ++  +L V  A WV+FE   Y
Sbjct:    51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEY 99

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M392	RTNLL_ARATH	No assigned EC number	0.5520	0.9142	0.9458	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021454001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (209 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam02453	164	pfam02453, Reticulon, Reticulon	2e-42

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  140 bits (354), Expect = 2e-42
 Identities = 63/164 (38%), Positives = 99/164 (60%), Gaps = 1/164 (0%)

Query: 24  AADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILN 83
            AD++LWR    +  +    L  W++F  SGY+LLS++S +LLLL+A+ FLW  A  +LN
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 84  R-PAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFV 142
             P P  P++ LSEE V E+A  +R  +N  L   + + LG++     + A+ LWL+S++
Sbjct: 61  AVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYL 120

Query: 143 GGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQ 186
           G L   LTL Y  +++  T+P LYE+Y+D ID Y      K+++
Sbjct: 121 GSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.24
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	95.31
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	92.83
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	92.53
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	88.9

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-51  Score=341.66  Aligned_cols=203  Identities=43%  Similarity=0.762  Sum_probs=195.5

Q ss_pred             CCCCCCCcccchhhhcCCccccceeeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028337            4 SSDRLFKRQRTIHEILGGGLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILN   83 (210)
Q Consensus         4 ~~~~~~~~~~~~~~~lgg~~v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~ls~~s~~~l~~l~~~f~~~~~~~~~~   83 (210)
                      .++|+|+|++|+|+.+|||+++|+++|||++.||.+|++++++|++|+..+|+.+++.|+++++.+.+.|.|++...+++
T Consensus        23 ~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~  102 (230)
T KOG1792|consen   23 KSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLN  102 (230)
T ss_pred             hhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999877777


Q ss_pred             C-CCC--CCC-ccccCHHHHHHHHHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028337           84 R-PAP--PLP-ELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIV  159 (210)
Q Consensus        84 ~-~~~--~~~-~~~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~  159 (210)
                      | +.|  +.| ++++|||.+++.+++++.++|+.+.++|++++++|+.+++|++++||+++++|+|||++||+|+|++++
T Consensus       103 k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~  182 (230)
T KOG1792|consen  103 KKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLL  182 (230)
T ss_pred             cCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            7 445  577 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhHHHHHhccchhhhh
Q 028337          160 LTLPALYERYEDHIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEK  206 (210)
Q Consensus       160 FTlP~lY~~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~~  206 (210)
                      ||+|.+||+|||+||++++.+.++++++|+++++|+++|||+++.++
T Consensus       183 ~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~  229 (230)
T KOG1792|consen  183 FTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK  229 (230)
T ss_pred             hcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence            99999999999999999999999999999999999999999988664

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=7.9e-38  Score=250.45  Aligned_cols=163  Identities=34%  Similarity=0.585  Sum_probs=44.7

Q ss_pred             ccceeeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCCCccccCHH
Q 028337           24 AADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPA------PPLPELHLSEE   97 (210)
Q Consensus        24 v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~ls~~s~~~l~~l~~~f~~~~~~~~~~~~~------~~~~~~~isee   97 (210)
                      |+|+++||||++||.+|++++++|+++++.++|++|++|+++++.+++.+++....+.+++.+      ++.++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            689999999999999999999999999999999999999999999998887655444444432      33347899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 028337           98 MVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYA  177 (210)
Q Consensus        98 ~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q~~ID~~~  177 (210)
                      .++++++.+.+.+|..++.+|+++.++|+..|+++++++|+++++|+++|++||++++++++||+|.+||+||++||+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~  160 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV  160 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028337          178 ILGYRKLRQ  186 (210)
Q Consensus       178 ~~~~~~~~~  186 (210)
                      ++++++++|
T Consensus       161 ~~~~~~~~k  169 (169)
T PF02453_consen  161 AKVKEKVKK  169 (169)
T ss_dssp             ---------
T ss_pred             HHHHHHhcC
Confidence            999988775

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.24  E-value=0.0044  Score=59.41  Aligned_cols=165  Identities=18%  Similarity=0.171  Sum_probs=102.6

Q ss_pred             ccccceeeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CC-CCcc-
Q 028337           22 GLAADVILWRRKNVTVGILLVTLAAWVVFERSGYTLLSLVSSVLLLLIAILFLWAKAAAILNRPA-------PP-LPEL-   92 (210)
Q Consensus        22 ~~v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~ls~~s~~~l~~l~~~f~~~~~~~~~~~~~-------~~-~~~~-   92 (210)
                      ..+.++..|+||.+|..+++..+.+.+      ...+..+.-..++.+++..+|.+..+-.++..       || ...+ 
T Consensus       504 ~~~~~l~~We~P~kt~~Fl~~~~~iI~------r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvE  577 (683)
T PF04842_consen  504 KWLQKLASWEEPLKTLVFLALFLYIIY------RGWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVE  577 (683)
T ss_pred             HHHHHHhhccCcchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHH
Confidence            347789999999999988887765422      12222222222333333333432211112221       22 1111 


Q ss_pred             -ccCHHHHHHHHHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhchh
Q 028337           93 -HLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYED  171 (210)
Q Consensus        93 -~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~q~  171 (210)
                       .+.-.....-++......|-++-++|.|++...+..+-++++.+..++.+-..+.+--++...++-.||-..=+.+   
T Consensus       578 qilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr---  654 (683)
T PF04842_consen  578 QILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR---  654 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch---
Confidence             1222233344567778899999999999999999999999999999999999999988888888888885432211   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhccchhhhh
Q 028337          172 HIDKYAILGYRKLRQLYVKIDEEFVSKVRKWILEK  206 (210)
Q Consensus       172 ~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~~  206 (210)
                         .-.++..+++++-+.        .||-+|+.-
T Consensus       655 ---~s~er~~RRlrEWW~--------sIPAaPV~v  678 (683)
T PF04842_consen  655 ---ESSERFNRRLREWWD--------SIPAAPVQV  678 (683)
T ss_pred             ---hhHHHHHHHHHHHHh--------hCCccceEe
Confidence               123344445554433        688887653

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.31  E-value=0.08  Score=44.94  Aligned_cols=81  Identities=11%  Similarity=0.052  Sum_probs=68.1

Q ss_pred             HhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-----------------------hhH
Q 028337          116 VSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERY-----------------------EDH  172 (210)
Q Consensus       116 ~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~~~-----------------------q~~  172 (210)
                      ...++++|+|.+.+..++.+..++..+-..++..++..++.+.+++++..|.++                       |+.
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            578999999999999999999999999999988888888888888888777665                       566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Q 028337          173 IDKYAILGYRKLRQLYVKIDEEFV  196 (210)
Q Consensus       173 ID~~~~~~~~~~~~~~~~~~~kv~  196 (210)
                      ++++...++.++|...+++++=..
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~ia~  145 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRDIAL  145 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            778888888888888888776433

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=92.83  E-value=1.6  Score=39.07  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=17.9

Q ss_pred             cccceeeccccchhHHHHHHHHH
Q 028337           23 LAADVILWRRKNVTVGILLVTLA   45 (210)
Q Consensus        23 ~v~dlllWrd~~~Sg~vf~~~~~   45 (210)
                      .+.++++|+||..+-.++...+.
T Consensus        31 ~vl~il~W~~p~~t~~~L~l~t~   53 (359)
T PF06398_consen   31 RVLRILTWTNPDYTLSFLLLYTF   53 (359)
T ss_pred             HHHHeEEeCCCCcchHHHHHHHH
Confidence            47789999999988777665553

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=92.53  E-value=0.92  Score=36.27  Aligned_cols=65  Identities=12%  Similarity=-0.005  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHhchhhcccchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 028337          103 AALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYE  167 (210)
Q Consensus       103 ~~~v~~~in~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tLl~i~~v~~FTlP~lY~  167 (210)
                      ++.+...+....+.++.++.++|+..|..+++++++.+.+--+..+..++.+..+..++=|++-.
T Consensus        71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~  135 (156)
T PF08372_consen   71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRN  135 (156)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccC
Confidence            44555666777789999999999999999999998888887777777776676666667666654

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=88.90  E-value=0.31  Score=38.95  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=22.7

Q ss_pred             CccccceeeccccchhHHHHHHHHHH
Q 028337           21 GGLAADVILWRRKNVTVGILLVTLAA   46 (210)
Q Consensus        21 g~~v~dlllWrd~~~Sg~vf~~~~~~   46 (210)
                      |+++..++.||||..|++...+.+++
T Consensus        82 gERl~allsWrdP~aT~lf~~~clv~  107 (156)
T PF08372_consen   82 GERLQALLSWRDPRATALFVVFCLVA  107 (156)
T ss_pred             HHHHHHhhccCCccHHHHHHHHHHHH
Confidence            67899999999999999888877664

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.32
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.2

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.32  E-value=5.6e-08  Score=67.74  Aligned_cols=58  Identities=16%  Similarity=0.231  Sum_probs=50.6

Q ss_pred             HHHHHHHHhCCCC--CCCC-----ccccCHHHHHHHHHHHHHHHHHHHHHhchhhcccchHHHHH
Q 028337           74 LWAKAAAILNRPA--PPLP-----ELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFR  131 (210)
Q Consensus        74 ~~~~~~~~~~~~~--~~~~-----~~~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d~~~slk  131 (210)
                      +|..+.+.++++.  +|+.     |+++|+|.+++.++.+...+|.++.++|+++++||+.+|+|
T Consensus        15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            4666777788876  4542     89999999999999999999999999999999999999875

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.20  E-value=6e-05  Score=49.78  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHhchhhcccc
Q 028337           91 ELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKN  125 (210)
Q Consensus        91 ~~~isee~v~~~~~~v~~~in~~l~~~r~l~~~~d  125 (210)
                      |+++|+|.+++.++.+..++|.++.++|++++++|
T Consensus        26 di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A           26 EVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             HHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            89999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00