Citrus Sinensis ID: 028375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MAWVTNAAAATTATNLFVPKSSCAYWYWSSNNYKNELRLSRRTGSVGLVYCSSHSSNTANNNDKNKGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYHEE
Secondary Structure (PSIPRED)
cccccHHHHHcccccEEEEcccEEEEEEccccHHHHHEEcccccccccEEEccccccccccccccccccccccEEccccccccccccccccHHHHHHHHHcccccccccccccccccEEEEHHHHHHHHHHHccccEEEEEEEEEEcccEEEEEEEEEEEcccccEEEEEcccEEccccccccHHHHHHHHHHHHHHHHHcccEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEcHHHHHHHHHcccccccEEEEEEccccHHHEEEEccccccccEEEEcccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHccccccHEEcccccccccEccHHHHHHHHHHccccccEEEEEEEEccccEEEEEEEEEEEccccHEEEHccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEccc
Coil and Loop (DISEMBL)
MAWVTNAAAattatnlfvpksscaywywssnnyknelrlsrrtGSVGLVYCSshssntannndknkgvpnsnyvvpleksfssanssymtRPLVEILRDLnkripdniinpsdntssTFISWYNANrmlsfyapgwcgevRDVIFSENGSVTVVYRVTlrgsdgeahreatgtvsssdsritdpVAAAEEIAFCKACARFGLGLYLYHEE
Flexible Loop (DISEMBL)
mawvtnaaaattatnlfvpksSCAYWYWSSNNYKNELRLSRRTGSVGLVYCSSHssntannndknkgvPNSNYVVPLEKSfssanssymTRPLVEILRDLNKRipdniinpsdntssTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTlrgsdgeahreatgtvsssdsriTDPVAAAEEIAFCKACARFGLGLYLYHEE
Low Complexity Region (SEG)
MAWVtnaaaattatnLFVPKSSCAYWYWSSNNYKNELRLSRRTGSVGLVYCSSHSSNTANNNDKNKGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYHEE
Disordered region (IsUnstruct)
**WVTNAAAATTATNLFVPKSSCAYWYWSSNNYKNELRLSRRTGSVGLVYC************************************YMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLR************************VAAAEEIAFCKACARFGLGLYLYH**
Disordered Region (DISOPRED)
*******AAATTATNLFVPKSSCAYWYWSSNNYKNELRLS**********************************VPLEKS*********TRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYH**
Disordered Region (DISEMBL)
MAWVTNAAAATTATNLFVPKSSCAYWYWSSNNYKNELRLSRRTGSVGLVYCSSHSSNTANNNDKNKGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSD******************TDPVAAAEEIAFCKACARFGLGLYLYHEE
Disordered Region (DISPRO)
*AWVTNAAAATTATNLFVPKSSCAYWYWSSNNYKNELRLSRRTGSVGLVYCSS**************VP*SNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYH**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAWVTNAAAATTATNLFVPKSSCAYWYWSSNNYKNELRLSRRTGSVGLVYCSSHSSNTANNNDKNKGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYHEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
388518829	220	unknown [Lotus japonicus]	0.842	0.804	0.655	6e-64
118487436	223	unknown [Populus trichocarpa]	0.676	0.636	0.818	2e-63
224053617	217	predicted protein [Populus trichocarpa]	0.695	0.672	0.789	5e-63
255543302	220	conserved hypothetical protein [Ricinus	0.661	0.631	0.839	4e-61
449455607	209	PREDICTED: uncharacterized protein LOC10	0.733	0.736	0.777	3e-60
297795373	205	hypothetical protein ARALYDRAFT_494829 [	0.666	0.682	0.761	6e-60
15238827	199	uncharacterized protein [Arabidopsis tha	0.909	0.959	0.62	2e-59
21593360	199	unknown [Arabidopsis thaliana]	0.666	0.703	0.75	7e-59
224075403	125	predicted protein [Populus trichocarpa]	0.590	0.992	0.832	1e-55
351726459	202	uncharacterized protein LOC100306634 [Gl	0.642	0.668	0.734	6e-55

>gi|388518829|gb|AFK47476.1| unknown [Lotus japonicus]

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 144/180 (80%), Gaps = 3/180 (1%)

Query: 34  KNELRLSRRTGSVGLVYCSSHSSNTANNNDKNKGVPNSNYVVPLEKSFSSANSSYMTRPL 93
           + +  +  R G++ L      SSN+ +N+ K  GV NSNYVVPL+ SF  +NSS +TRPL
Sbjct: 36  RRDFGVKGRIGTLSLKCSLERSSNSNSNDGKKGGVSNSNYVVPLDNSFPFSNSSCITRPL 95

Query: 94  VEILRDLNKRIPDNIIN---PSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGS 150
            EILRDLNKRIPD I+    P D ++STFI WY+ANRMLSFYAPGWCGE+RDVIFS+NGS
Sbjct: 96  AEILRDLNKRIPDTIVKAHVPDDPSASTFIPWYHANRMLSFYAPGWCGEIRDVIFSDNGS 155

Query: 151 VTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           VTVVYR+T+RGSDGEA+RE+TGT+S +D    DPV+AAEE+AFCKACARFGLGLYLYHE+
Sbjct: 156 VTVVYRLTVRGSDGEAYRESTGTISPNDGSTVDPVSAAEEVAFCKACARFGLGLYLYHED 215

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487436|gb|ABK95546.1| unknown [Populus trichocarpa]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 130/143 (90%), Gaps = 1/143 (0%)

Query: 68  VPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANR 127
           VPNSNYVVPL+ S +SA +S +TRPL EILRDLNKRIPDNII P  N+SST I W++ANR
Sbjct: 79  VPNSNYVVPLDNSLASAYTSCITRPLSEILRDLNKRIPDNIIKPP-NSSSTLIPWFHANR 137

Query: 128 MLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAA 187
           MLSFYAPGWCGE+RDVIF+ENGSVTVVYRVT+RGSDGEAHRE++GTVSSSD  I DPVAA
Sbjct: 138 MLSFYAPGWCGEIRDVIFAENGSVTVVYRVTIRGSDGEAHRESSGTVSSSDVAIEDPVAA 197

Query: 188 AEEIAFCKACARFGLGLYLYHEE 210
           AEEIAFC+ACARFGLGLYLYHEE
Sbjct: 198 AEEIAFCRACARFGLGLYLYHEE 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053617|ref|XP_002297900.1| predicted protein [Populus trichocarpa] gi|222845158|gb|EEE82705.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 132/147 (89%), Gaps = 1/147 (0%)

Query: 64  KNKGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWY 123
           K KGVP+SNYVVPL+KS +SA +S +TRPL EILRDLNKRIPDNII P  N+SST I W+
Sbjct: 72  KKKGVPDSNYVVPLDKSLASAYTSCITRPLSEILRDLNKRIPDNIIKPP-NSSSTLIPWH 130

Query: 124 NANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITD 183
           +ANRMLSFYAPGW GE+RDVIF+ENGSVTV++RVT+ GSDGEAHRE++GTVSSSD  I D
Sbjct: 131 HANRMLSFYAPGWSGEIRDVIFAENGSVTVIFRVTILGSDGEAHRESSGTVSSSDGDIED 190

Query: 184 PVAAAEEIAFCKACARFGLGLYLYHEE 210
           PVAAAEEIAFC+ACARFGLGLYLYHEE
Sbjct: 191 PVAAAEEIAFCRACARFGLGLYLYHEE 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543302|ref|XP_002512714.1| conserved hypothetical protein [Ricinus communis] gi|223548675|gb|EEF50166.1| conserved hypothetical protein [Ricinus communis]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 120/143 (83%), Positives = 130/143 (90%), Gaps = 4/143 (2%)

Query: 68  VPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANR 127
           VPNSNYVVPL+KSFSS+ SS +TRPL EILRDLNKRIPDNII PS+    TFI WY+ANR
Sbjct: 82  VPNSNYVVPLDKSFSSSYSSCITRPLAEILRDLNKRIPDNIITPSN----TFIPWYHANR 137

Query: 128 MLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAA 187
           MLSFYAPGWCGE+RDVIFS+NGSVTVVYRVT+RGSDGEA+RE+TGTVS SD  I DPVAA
Sbjct: 138 MLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGSDGEAYRESTGTVSPSDGHIVDPVAA 197

Query: 188 AEEIAFCKACARFGLGLYLYHEE 210
           AEEIAFCKACARFGLGLYLYHEE
Sbjct: 198 AEEIAFCKACARFGLGLYLYHEE 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455607|ref|XP_004145544.1| PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus] gi|449485113|ref|XP_004157073.1| PREDICTED: uncharacterized LOC101203655 [Cucumis sativus]

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 126/162 (77%), Positives = 140/162 (86%), Gaps = 8/162 (4%)

Query: 55  SSNTANNNDKNKGVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPS-- 112
           SS+ AN+N   KGVPNSNYVVPL KSFS ANSS +TRPL EILRDLNKRIPDNI   +  
Sbjct: 50  SSSDANSN--KKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPH 107

Query: 113 ----DNTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHR 168
               D + +TFI W++ANRMLSFYAPGWCGE+RDVIFS+NGSVTVVYRVT+RGSDGEAHR
Sbjct: 108 SDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHR 167

Query: 169 EATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           E+TGTVS++DS I DPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 168 ESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795373|ref|XP_002865571.1| hypothetical protein ARALYDRAFT_494829 [Arabidopsis lyrata subsp. lyrata] gi|297311406|gb|EFH41830.1| hypothetical protein ARALYDRAFT_494829 [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 129/147 (87%), Gaps = 7/147 (4%)

Query: 67  GVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIIN----PSDNTSSTFISW 122
            VPNSNYVVP++K FSS  SS +TRPL+EILRDLNK+IPDNI+     PS + +S FI W
Sbjct: 62  AVPNSNYVVPIDK-FSS--SSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAASGFIPW 118

Query: 123 YNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRIT 182
           Y+ANRMLSFYAPGWCGEVRDVIFSENG+VTVVYR+T+RGSDGEAHRE+TGTV+++D  I 
Sbjct: 119 YHANRMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIE 178

Query: 183 DPVAAAEEIAFCKACARFGLGLYLYHE 209
           DPV AAEEIAFC+ACARFGLGLYLYHE
Sbjct: 179 DPVTAAEEIAFCRACARFGLGLYLYHE 205

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238827|ref|NP_199598.1| uncharacterized protein [Arabidopsis thaliana] gi|10177923|dbj|BAB11334.1| unnamed protein product [Arabidopsis thaliana] gi|51969470|dbj|BAD43427.1| unknown protein [Arabidopsis thaliana] gi|90568004|gb|ABD94072.1| At5g47870 [Arabidopsis thaliana] gi|332008199|gb|AED95582.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 149/200 (74%), Gaps = 9/200 (4%)

Query: 16  LFVPKSSCAYWYWSSNNYKNELRLSR-RTGSVGLVYCSSHSSNTANNNDKNKGVPNSNYV 74
           L V ++S A+   S +     ++LS  RT +V      S       +  K K VPNSNYV
Sbjct: 3   LQVQQTSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYV 62

Query: 75  VPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSST-----FISWYNANRML 129
           VP++K FSS  SS +TRPL+EILRDLNK+IPDNI+   D  S++     FI WY+ANRML
Sbjct: 63  VPIDK-FSS--SSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRML 119

Query: 130 SFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAE 189
           SFYAPGWCGEVRDVIFSENG+VTVVYR+T+RGSDGEAHRE+TGTV+++D  I DPV AAE
Sbjct: 120 SFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAE 179

Query: 190 EIAFCKACARFGLGLYLYHE 209
           EIAFC+ACARFGLGLYLYHE
Sbjct: 180 EIAFCRACARFGLGLYLYHE 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593360|gb|AAM65309.1| unknown [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 128/148 (86%), Gaps = 8/148 (5%)

Query: 67  GVPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSST-----FIS 121
            VPNSNYVVP++K FSS  SS +TRPL+EILRDLNK+IPDNI+   D  S++     FI 
Sbjct: 55  AVPNSNYVVPIDK-FSS--SSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIP 111

Query: 122 WYNANRMLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRI 181
           WY+ANRMLSFYAPGWCGEVRDVIFSENG+VTVVYR+T+RGSDGEAHRE+TGTV+++D  I
Sbjct: 112 WYHANRMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDYHI 171

Query: 182 TDPVAAAEEIAFCKACARFGLGLYLYHE 209
            DPV AAEEIAFC+ACARFGLGLYLYHE
Sbjct: 172 EDPVTAAEEIAFCRACARFGLGLYLYHE 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075403|ref|XP_002304619.1| predicted protein [Populus trichocarpa] gi|222842051|gb|EEE79598.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/125 (83%), Positives = 115/125 (92%), Gaps = 1/125 (0%)

Query: 86  SSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYAPGWCGEVRDVIF 145
           +S +TRPL EILRDLNKRIPDNII P  N+SST I W++ANRMLSFYAPGWCGE+RDVIF
Sbjct: 1   TSCITRPLSEILRDLNKRIPDNIIKPP-NSSSTLIPWFHANRMLSFYAPGWCGEIRDVIF 59

Query: 146 SENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLY 205
           +ENGSVTVVYRVT+RGSDGEAHRE++GTVSSSD  I DPVAAAEEIAFC+ACARFGLGLY
Sbjct: 60  AENGSVTVVYRVTIRGSDGEAHRESSGTVSSSDVAIEDPVAAAEEIAFCRACARFGLGLY 119

Query: 206 LYHEE 210
           LYHEE
Sbjct: 120 LYHEE 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726459|ref|NP_001237895.1| uncharacterized protein LOC100306634 [Glycine max] gi|255629135|gb|ACU14912.1| unknown [Glycine max]

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 105/143 (73%), Positives = 121/143 (84%), Gaps = 8/143 (5%)

Query: 68  VPNSNYVVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSDNTSSTFISWYNANR 127
           V NSNYVVPL+   + ANSS +TRPL EILRDLNKRIPD I+         FI W++ANR
Sbjct: 63  VSNSNYVVPLD---NMANSSCITRPLAEILRDLNKRIPDTIVK-----HDRFIPWHHANR 114

Query: 128 MLSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAA 187
           MLSFYAPGWCGE+RDVIFS+NGSVTVVYR+T+RGSDGEA+RE+TGT+S SD  I DPV+A
Sbjct: 115 MLSFYAPGWCGEIRDVIFSDNGSVTVVYRLTVRGSDGEAYRESTGTISPSDGSIGDPVSA 174

Query: 188 AEEIAFCKACARFGLGLYLYHEE 210
           AEEIAFCK+CARFGLGLYLYHE+
Sbjct: 175 AEEIAFCKSCARFGLGLYLYHED 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2160967	199	RAD52-2 "AT5G47870" [Arabidops	0.904	0.954	0.631	2.5e-58
TAIR|locus:2032313	176	RAD52-1 "radiation sensitive 5	0.595	0.710	0.515	2.3e-30

TAIR|locus:2160967 RAD52-2 "AT5G47870" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 127/201 (63%), Positives = 153/201 (76%)

Query:    16 LFVPKSSCAYWYWSSNNYKNELRLSR-RTGSVGL-VYCSSHSSNTANNNDKNKGVPNSNY 73
             L V ++S A+   S +     ++LS  RT +V   V CS        +  K K VPNSNY
Sbjct:     3 LQVQQTSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVG-GGDAGKKKAVPNSNY 61

Query:    74 VVPLEKSFSSANSSYMTRPLVEILRDLNKRIPDNIINPSD--NTS---STFISWYNANRM 128
             VVP++K FSS++S  +TRPL+EILRDLNK+IPDNI+   D  +TS   S FI WY+ANRM
Sbjct:    62 VVPIDK-FSSSSS--ITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRM 118

Query:   129 LSFYAPGWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAA 188
             LSFYAPGWCGEVRDVIFSENG+VTVVYR+T+RGSDGEAHRE+TGTV+++D  I DPV AA
Sbjct:   119 LSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAA 178

Query:   189 EEIAFCKACARFGLGLYLYHE 209
             EEIAFC+ACARFGLGLYLYHE
Sbjct:   179 EEIAFCRACARFGLGLYLYHE 199

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

TAIR|locus:2032313 RAD52-1 "radiation sensitive 51-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 66/128 (51%), Positives = 90/128 (70%)

Query:    86 SSYMTRPLVEILRDLNKRIPDNIINP--SDNTSSTFISWYNANRMLSFYAPGWCGEVRDV 143
             +S ++RPL EIL++LNK++PD++I     D  S  +I W+  NR+++ +AP W GEVR V
Sbjct:    47 TSGISRPLAEILKELNKKVPDSVIRTRVEDGCSIKYIPWHIVNRIMNMHAPEWSGEVRSV 106

Query:   144 IFSENGS-VTVVYRVTLRGSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGL 202
              +S +G+ VTV YRVTL G+D E  RE+TGT S  D    D V  AE +AF +ACARFGL
Sbjct:   107 TYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACARFGL 166

Query:   203 GLYLYHEE 210
             GL+LYHE+
Sbjct:   167 GLHLYHED 174


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       199   0.00085  111 3  11 22  0.37    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  182 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.06u 0.14s 22.20t   Elapsed:  00:00:01
  Total cpu time:  22.06u 0.14s 22.20t   Elapsed:  00:00:01
  Start:  Fri May 10 17:05:40 2013   End:  Fri May 10 17:05:41 2013

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I0621 hypothetical protein (217 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
COG4712	234	Uncharacterized protein conserved in bacteria [Fun	99.69
PF04098	154	Rad52_Rad22: Rad52/22 family double-strand break r	99.68
PF06378	164	DUF1071: Protein of unknown function (DUF1071); In	99.11
TIGR00607	161	rad52 recombination protein rad52. This family is	98.98
PF06420	171	Mgm101p: Mitochondrial genome maintenance MGM101;	98.7
PHA02448	192	hypothetical protein	97.89
COG5055	375	RAD52 Recombination DNA repair protein (RAD52 path	97.82
KOG4141	222	consensus DNA repair and recombination protein RAD	95.54

>COG4712 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.69  E-value=2.5e-17  Score=143.11  Aligned_cols=105  Identities=17%  Similarity=0.205  Sum_probs=92.3

Q ss_pred             HHHHHHHhcCCCCCCCccCCCC---------CCcceehhHHHHhhhccccC--CceeeeeeEEEcCCCeEEEEEEEEEEe
Q 028375           93 LVEILRDLNKRIPDNIINPSDN---------TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFSENGSVTVVYRVTLRG  161 (210)
Q Consensus        93 LsEILrdL~kpvPd~~Ik~k~~---------~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~sdg~~VtVvyRlTI~G  161 (210)
                      |+|++..|++|+|.+-|.||+.         +-|+|++-+.+++||++++|  ||+.|.. ++-+ |.-.+|..+++..+
T Consensus         3 lsdvq~alq~pl~a~~V~wrv~~f~a~~~~allLAy~DaRavq~rlDevfgv~gW~~E~~-~v~G-~~~ctV~v~~~d~w   80 (234)
T COG4712           3 LSDVQMALQRPLKASEVEWRVQSFKAKSGCALLLAYKDARAVQKRLDEVFGVLGWEREHQ-LVNG-NLFCTVRVYDEDMW   80 (234)
T ss_pred             HHHHHHHhhCCCCcceeEEeeeccccCCceeeeehhhhhHHHHHHHHHhcCcccchhhee-eccC-CeeeeEEEEeeeee
Confidence            7899999999999999999962         56889999999999999999  5999984 4443 66778888888888


Q ss_pred             cCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHhcCcccccc
Q 028375          162 SDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYH  208 (210)
Q Consensus       162 ~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArFGLGLYLYh  208 (210)
                          +||+++||++...     ++..+.+.+|||||.+||+|+|||+
T Consensus        81 ----VTk~D~ge~~~~e-----a~Kg~aSdsmKRaavqfGIGRyLYd  118 (234)
T COG4712          81 ----VTKQDVGEESNTE-----AEKGQASDSMKRAAVQFGIGRYLYD  118 (234)
T ss_pred             ----eeeccccccchhH-----HHhcccchHHHHHHhhhccchhhhc
Confidence                4999999997633     7888999999999999999999997

>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways

Probab=99.68  E-value=2.5e-17  Score=132.48  Aligned_cols=114  Identities=27%  Similarity=0.390  Sum_probs=85.9

Q ss_pred             HHHHHHHhcCCCCCCCccCCCC----CCcceehhHHHHhhhcccc--CCceeeeeeEEEc----CCC------eEEEEEE
Q 028375           93 LVEILRDLNKRIPDNIINPSDN----TSSTFISWYNANRMLSFYA--PGWCGEVRDVIFS----ENG------SVTVVYR  156 (210)
Q Consensus        93 LsEILrdL~kpvPd~~Ik~k~~----~sl~yIPW~~vnr~L~~~a--PgWsgEVrdVi~s----dg~------~VtVvyR  156 (210)
                      +.+|+..|.+|||...|++|++    ..+.||+.+.+.++||.++  .||+.||.++...    +.+      .+++.+|
T Consensus         2 ~~~i~~~L~~~~~~~~i~~R~~~~~~~~~~yl~~~~vi~~aN~vfGfngWs~~i~~~~~~~~~~~~~~~~~~~~~~~~vr   81 (154)
T PF04098_consen    2 IGEIQEKLEKPLPPEEISWRPGSGGKSKLPYLESRKVIELANEVFGFNGWSSEIISLEQDFVEEEPGEGKYSVGYSAIVR   81 (154)
T ss_dssp             HHHHHHHHH--B-TTTEEEEE-TTS--EEEEE-HHHHHHHHHHHH-TTTEEEEEEEEEEEEEEESSS--SEEEEEEEEEE
T ss_pred             HHHHHHHHhCccCHHHhEecccCCCCccccccCHHHHHHHHHHHhCcCCCceEEEeeEeeeeeccCCceeEEEEEEEEEE
Confidence            4789999999999999999964    3589999999999999998  4799999887771    122      3566667


Q ss_pred             EEEEecCcceeeeecccccCCC-----CCCCChHHHHHHHHHHHHHHHhc--CccccccC
Q 028375          157 VTLRGSDGEAHREATGTVSSSD-----SRITDPVAAAEEIAFCKACARFG--LGLYLYHE  209 (210)
Q Consensus       157 lTI~G~DgeitREatGta~~~D-----~~ygDpvsaAEamAFrRACArFG--LGLYLYhe  209 (210)
                      |||.  ||+ +||++|......     ..+.++.+.|.++|||||+..||  ||+|||+.
T Consensus        82 itLk--dg~-~~e~~G~g~~~~~~~k~~a~~~akK~AvtdAlKRA~~~fG~~lG~~Lyd~  138 (154)
T PF04098_consen   82 ITLK--DGT-YREDIGYGWSENMDGKGMAIEKAKKGAVTDALKRALRSFGNQLGRYLYDK  138 (154)
T ss_dssp             EEET--TS--EEEEEEEEEEESES-HHHHHHHHHHHHHHHHHHHHHHTT-GGGTTGGG-H
T ss_pred             EEEe--CCc-eeeecceEEEecCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7765  455 789999865542     23677899999999999999999  99999974

This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.

>PF06378 DUF1071: Protein of unknown function (DUF1071); InterPro: IPR009425 This entry is represented by Bacteriophage bIL285, Orf14

Probab=99.11  E-value=3.1e-10  Score=95.27  Aligned_cols=89  Identities=25%  Similarity=0.290  Sum_probs=68.7

Q ss_pred             CCcceehhHHHHhhhccccCCceeeeeeEE------------Ec-CCCeEEEEEEEEEEecCcceeeeeccc------cc
Q 028375          115 TSSTFISWYNANRMLSFYAPGWCGEVRDVI------------FS-ENGSVTVVYRVTLRGSDGEAHREATGT------VS  175 (210)
Q Consensus       115 ~sl~yIPW~~vnr~L~~~aPgWsgEVrdVi------------~s-dg~~VtVvyRlTI~G~DgeitREatGt------a~  175 (210)
                      ..+.|+.|..+-..|..++|+|+++|.+--            |- .+.-.+|..+|||.|.    +++-.=-      -+
T Consensus        20 ~~l~YLSWA~Aw~~lk~~~P~at~~i~~f~~~~~~~~~~~~p~~~t~~g~~V~v~vti~g~----t~~~~lPVMD~rNk~   95 (164)
T PF06378_consen   20 NGLSYLSWAWAWALLKKIYPDATYEIVEFPEYDITGLPYGVPYLDTNTGYMVEVSVTIEGQ----TYTMWLPVMDGRNKA   95 (164)
T ss_pred             CCCCeehHHHHHHHHHHhCCCCeEEEEECCCCCCCCCccccceecCCceEEEEEEEEECCE----EEEEEEeecCCCCCc
Confidence            579999999999999999999999996521            22 2334579999999885    5543211      11


Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHHhcCcccccc
Q 028375          176 SSDSRITDPVAAAEEIAFCKACARFGLGLYLYH  208 (210)
Q Consensus       176 ~~D~~ygDpvsaAEamAFrRACArFGLGLYLYh  208 (210)
                      . +...+..|-+|.-.||.+|||.||||||||.
T Consensus        96 i-~~p~~~dINka~~RclVKalA~~GLGLyiYa  127 (164)
T PF06378_consen   96 I-EKPTAFDINKAIMRCLVKALAMFGLGLYIYA  127 (164)
T ss_pred             c-cCcchhhhHHHHHHHHHHHHHHhCccceeec
Confidence            1 3345667899999999999999999999996

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial and phage proteins of unknown function.

>TIGR00607 rad52 recombination protein rad52

Probab=98.98  E-value=1.5e-09  Score=91.33  Aligned_cols=112  Identities=24%  Similarity=0.377  Sum_probs=87.8

Q ss_pred             HHHHHhcCCCCCCCccCCCC---CCcceehhHHHHhhhccccC--CceeeeeeEEEc--C--CC----eEEEEEEEEEEe
Q 028375           95 EILRDLNKRIPDNIINPSDN---TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS--E--NG----SVTVVYRVTLRG  161 (210)
Q Consensus        95 EILrdL~kpvPd~~Ik~k~~---~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s--d--g~----~VtVvyRlTI~G  161 (210)
                      .|+..|+++++...|+.|++   .++.|||.+.+...-|.+..  ||+-+|.++...  |  .+    .++++.|||+  
T Consensus         1 ~iq~~l~~~lgpe~is~R~g~gg~kv~Yieg~k~i~lANeiFGFnGWSs~I~~~~vd~~de~~~k~~vg~saiVRVtL--   78 (161)
T TIGR00607         1 AIQKALRQKLGPEYISSRSGGGGQKVCYIEGWKVINLANEIFGYNGWSHSITQQNVDFVDENNGKFSVGVCAIVRVTL--   78 (161)
T ss_pred             ChhHHhhcccCchheeeccCCCCceEEeccHHHHHHHHHHhcCCCCceeeeeecccceecccCCcEEEEEEEEEEEEE--
Confidence            37889999999999999974   78999999999999999976  799999876542  1  11    2566667776  


Q ss_pred             cCcceeeeecccccCCC-CC----CCChHHHHHHHHHHHHHHHhc--CccccccC
Q 028375          162 SDGEAHREATGTVSSSD-SR----ITDPVAAAEEIAFCKACARFG--LGLYLYHE  209 (210)
Q Consensus       162 ~DgeitREatGta~~~D-~~----ygDpvsaAEamAFrRACArFG--LGLYLYhe  209 (210)
                      .||. +||++|-....+ .+    |...-+.|..+|+|||+--||  ||.-||+.
T Consensus        79 kDGt-~~EdiG~G~~~n~~~K~~A~ekAKKeAvTDAlKRAlr~FGn~lGN~lydk  132 (161)
T TIGR00607        79 KDGS-YHEDVGYGVSENLRSKALAFEKAKKEAVTDALKRALRNFGNALGNCLYDK  132 (161)
T ss_pred             cCCc-EeecccceeeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhccH
Confidence            4774 899999865553 22    234456678899999999998  89999975

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []

Probab=98.70  E-value=1.1e-07  Score=80.84  Aligned_cols=112  Identities=19%  Similarity=0.230  Sum_probs=91.4

Q ss_pred             HHHHHHhcCCCCCCCccCCCCCCcceehhHHHHhhhcccc-C-CceeeeeeEEEcCCCeEEEEEEEEEEecCcceeeeec
Q 028375           94 VEILRDLNKRIPDNIINPSDNTSSTFISWYNANRMLSFYA-P-GWCGEVRDVIFSENGSVTVVYRVTLRGSDGEAHREAT  171 (210)
Q Consensus        94 sEILrdL~kpvPd~~Ik~k~~~sl~yIPW~~vnr~L~~~a-P-gWsgEVrdVi~sdg~~VtVvyRlTI~G~DgeitREat  171 (210)
                      .|+.+.|.+|+....|+.||.. +-|+|+-.+.||||.-. | ||.--=|....=.++.|+=.|-|..+|   .+.=++.
T Consensus        17 ~e~~~~L~~pl~~~DiEIKPDG-liYLPEikYRRiLN~AFGpGgWgL~Prg~~~v~~k~v~ReyaLic~G---r~Vs~a~   92 (171)
T PF06420_consen   17 KEVADILLAPLDPEDIEIKPDG-LIYLPEIKYRRILNKAFGPGGWGLVPRGETIVTGKIVTREYALICHG---RLVSQAR   92 (171)
T ss_pred             HHHHHHHhCCCChhceeECCCc-eEEchHHHHHHHHHHhcCCCceeeeecCCceecCceEEEEEEEEEcC---EEEEEee
Confidence            3677788999999999998754 67999999999999876 6 498544433222367788788877776   4888999


Q ss_pred             cc-ccCCCCCCCChHHHHHHHHHHHHHHHhcCccccccC
Q 028375          172 GT-VSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYHE  209 (210)
Q Consensus       172 Gt-a~~~D~~ygDpvsaAEamAFrRACArFGLGLYLYhe  209 (210)
                      |+ ...+..+++++.+.|.+.||.|||.-+|++=.||+.
T Consensus        93 GEq~yf~~~~i~tA~EgcKSNALmRCCKDLGIaSELWDP  131 (171)
T PF06420_consen   93 GEQDYFSPDSIPTATEGCKSNALMRCCKDLGIASELWDP  131 (171)
T ss_pred             ccccccCCCCCchHHHHHHHHHHHHHHHHcCcchhhcCh
Confidence            99 445677789999999999999999999999999974

Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome

>PHA02448 hypothetical protein

Probab=97.89  E-value=2.8e-05  Score=66.14  Aligned_cols=112  Identities=27%  Similarity=0.298  Sum_probs=91.5

Q ss_pred             CCchHHHHHHHhcCCCCCCCccCCC--CCCcceehhHHHHhhhccccCCceeeeeeEEEcCCCeE------EEEEEEEEE
Q 028375           89 MTRPLVEILRDLNKRIPDNIINPSD--NTSSTFISWYNANRMLSFYAPGWCGEVRDVIFSENGSV------TVVYRVTLR  160 (210)
Q Consensus        89 itRPLsEILrdL~kpvPd~~Ik~k~--~~sl~yIPW~~vnr~L~~~aPgWsgEVrdVi~sdg~~V------tVvyRlTI~  160 (210)
                      |+.|=.|=|..|++|||.+-|..-|  +..++|+--.-+.-+|-..-|-|+||-  +.+.+++-.      -+--|||+-
T Consensus         1 msepdveglaklrepfppnqigklpkggi~ld~~gh~~lt~r~l~~dplwtwep--~a~~~~glp~~d~~gglwirlt~~   78 (192)
T PHA02448          1 MSEPDVEGLAKLREPFPPNQIGKLPKGGITLDFLGHGYLTARFLDVDPLWTWEP--FAVGDNGLPLLDEHGGLWIRLTLC   78 (192)
T ss_pred             CCccchhHHHHhcCCCChhhhccCCCCceeEEecchhhhhhhhcccCccccccc--cccCCCCCcccccCCCeEEEEEEe
Confidence            4668889999999999999998654  688999998888888888899999998  566543322      256799999


Q ss_pred             ecCcceeeeecccccCCCCCCCChHHHHHHHHHHHHHHHhcCcccccc
Q 028375          161 GSDGEAHREATGTVSSSDSRITDPVAAAEEIAFCKACARFGLGLYLYH  208 (210)
Q Consensus       161 G~DgeitREatGta~~~D~~ygDpvsaAEamAFrRACArFGLGLYLYh  208 (210)
                      |.    ||-.-|.+. +..+ .++|+.|..+|+|.|--|||--|.||.
T Consensus        79 g~----tr~gygd~~-gk~g-pnavkeaigdalrnagmrfgaal~lw~  120 (192)
T PHA02448         79 GV----TRIGYGDAG-GKKG-PNAVKEAIGDALRNAGMRFGAALDLWC  120 (192)
T ss_pred             cc----ceeeccccC-CCcC-chHHHHHHHHHHHhccchhhHHHHHHh
Confidence            96    998888763 3333 578999999999999999999999985

>COG5055 RAD52 Recombination DNA repair protein (RAD52 pathway) [DNA replication, recombination, and repair]

Probab=97.82  E-value=3.8e-05  Score=71.40  Aligned_cols=114  Identities=27%  Similarity=0.420  Sum_probs=82.9

Q ss_pred             HHHHHHHhcCCCCCCCccCCCC---CCcceehhHHHHhhhccccC--CceeeeeeEEEc--C---CCe----EEEEEEEE
Q 028375           93 LVEILRDLNKRIPDNIINPSDN---TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS--E---NGS----VTVVYRVT  158 (210)
Q Consensus        93 LsEILrdL~kpvPd~~Ik~k~~---~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s--d---g~~----VtVvyRlT  158 (210)
                      .-.|+..|.+..=...|..|+|   .+++|||=+.+...-|....  ||+-|||+|...  +   .++    ++|..|||
T Consensus        26 ~~~lqs~L~rklgpeYis~R~G~g~~~iayIegw~~I~lANeiFGfnGWss~I~sv~id~~ee~~e~k~svg~saiVRVT  105 (375)
T COG5055          26 IGKLQSKLERKLGPEYISRRSGFGGSSIAYIEGWKAIELANEIFGFNGWSSEIRSVEIDYCEEFEEKKFSVGASAIVRVT  105 (375)
T ss_pred             HHHHHHHHHHHhccHhhccccCCCCCceeeechhHHHHHHHHhhCcCccccceeeeeeeccccccccceeeeeEEEEEEE
Confidence            4456677777777788888875   79999998877777777654  899999999764  1   122    34556777


Q ss_pred             EEecCcceeeeecccccCCCCC-----CCChHHHHHHHHHHHHHHHhc--CccccccC
Q 028375          159 LRGSDGEAHREATGTVSSSDSR-----ITDPVAAAEEIAFCKACARFG--LGLYLYHE  209 (210)
Q Consensus       159 I~G~DgeitREatGta~~~D~~-----ygDpvsaAEamAFrRACArFG--LGLYLYhe  209 (210)
                      |.  ||. +||.+|=-+.+-..     |.-.-+.|.-+|||||-..||  ||=+||+-
T Consensus       106 LK--DGt-y~EdiGyGsien~r~ka~ayek~KKEavtDALKRALr~Fgnslgnc~ydk  160 (375)
T COG5055         106 LK--DGT-YREDIGYGSIENCRRKAEAYEKAKKEAVTDALKRALRNFGNSLGNCLYDK  160 (375)
T ss_pred             ec--CCc-cccccccceeecccccHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Confidence            64  333 89999876555333     444445678899999999999  88899863

>KOG4141 consensus DNA repair and recombination protein RAD52/RAD22 [Replication, recombination and repair]

Probab=95.54  E-value=0.033  Score=49.60  Aligned_cols=108  Identities=21%  Similarity=0.271  Sum_probs=76.5

Q ss_pred             HHHHHHhcCCCCCCCccCCC---CCCcceehhHHHHhhhccccC--CceeeeeeEEEc-----CCC---eEEEEEEEEEE
Q 028375           94 VEILRDLNKRIPDNIINPSD---NTSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS-----ENG---SVTVVYRVTLR  160 (210)
Q Consensus        94 sEILrdL~kpvPd~~Ik~k~---~~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s-----dg~---~VtVvyRlTI~  160 (210)
                      ..|++.|.++.=...|+.|.   +.++.||+=+.+...-|....  ||+-+|++|...     +++   -+++..||||.
T Consensus        37 ~~iqk~L~~~lgpeYiS~R~g~gg~~v~yIegw~vI~lANeiFGyNGWs~sI~~~~vd~~d~~~~k~~vg~~a~VrVtLk  116 (222)
T KOG4141|consen   37 QAIQKKLRQKLGPEYISSRMGGGGQSVCYIEGWRVINLANEIFGYNGWSSSITSVNVDFVDEEEGKFSVGVSAIVRVTLK  116 (222)
T ss_pred             HHHHHHHHHHhccHhhhccccCCCceeEEecchHHHHHHHHHhCcCcccccceeeecceeccccCeEEEeEEEEEEEEEe
Confidence            45889999999999999986   389999998887777777754  899999887653     222   14556788886


Q ss_pred             -ecCcceeeeecccccCC---CC--CCCChHHHHHHHHHHHHHHHhcCccc
Q 028375          161 -GSDGEAHREATGTVSSS---DS--RITDPVAAAEEIAFCKACARFGLGLY  205 (210)
Q Consensus       161 -G~DgeitREatGta~~~---D~--~ygDpvsaAEamAFrRACArFGLGLY  205 (210)
                       |+    +||++|=-+..   ..  .|.-.-+-|...|++++-..|+....
T Consensus       117 DGt----yhEDiGyG~~e~~~~r~~~~~~~~k~~~~d~~k~~l~~~~n~i~  163 (222)
T KOG4141|consen  117 DGT----YHEDIGYGSAENLSSRGLCYEKAKKEAVGDALKKALRSFENTIL  163 (222)
T ss_pred             cCc----ccccccccccccchhhhhhhhhhhhhhhhhhhhHHHhhcccccc
Confidence             54    89998854211   11  12222344777888999998887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
1h2i_A	209	RAD52, DNA repair protein RAD52 homolog; DNA-bindi	99.19

>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A

Probab=99.19  E-value=2.2e-11  Score=104.12  Aligned_cols=118  Identities=18%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             chHHHHHHHhcCCCCCCCccCCCC---CCcceehhHHHHhhhccccC--CceeeeeeEEEc-----CCC-eEEEEEEEEE
Q 028375           91 RPLVEILRDLNKRIPDNIINPSDN---TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS-----ENG-SVTVVYRVTL  159 (210)
Q Consensus        91 RPLsEILrdL~kpvPd~~Ik~k~~---~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s-----dg~-~VtVvyRlTI  159 (210)
                      +=.+.|++.|++++|.+.|++|++   .++.||+.+.+....|.+..  ||+-+|.++...     +++ .|.+.+.|.|
T Consensus        34 ee~~~iq~~L~~~lgpe~is~R~g~gg~kv~YIeg~kvI~lANeiFGFNGWSs~I~~~~vd~~d~~~gk~~v~~~aiVRV  113 (209)
T 1h2i_A           34 EEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRV  113 (209)
T ss_dssp             HHHHHHHHHHHCCBCTTTEEEEECTTSCEEEEECHHHHHHHHHHHHCTTTEEEEEEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcccCchhheeccCCCCceEEEeeHHHHHHHHHhccCCCCCeeEEEEeeceeEeccCCeEEEEEEEEEEE
Confidence            457889999999999999999974   78999999999999997754  799999776432     233 2333333444


Q ss_pred             EecCcceeeeecccccCC-CC----CCCChHHHHHHHHHHHHHHHhc--CccccccC
Q 028375          160 RGSDGEAHREATGTVSSS-DS----RITDPVAAAEEIAFCKACARFG--LGLYLYHE  209 (210)
Q Consensus       160 ~G~DgeitREatGta~~~-D~----~ygDpvsaAEamAFrRACArFG--LGLYLYhe  209 (210)
                      .=.||. +||++|..... ..    .+...-+.|..+|||||.-.||  ||..||+-
T Consensus       114 tLkDGt-~~EdiG~G~~~n~~~kg~A~ekAKKeAvTDAlKRaLr~FGn~lGn~lydk  169 (209)
T 1h2i_A          114 QLKDGS-YHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDK  169 (209)
T ss_dssp             EETTSC-EEEEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTGGGCH
T ss_pred             EECCCC-EecceeeEEEecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh
Confidence            446786 79999986433 12    2335667789999999999999  99999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1kn0a_	184	The homologous-pairing domain of Rad52 recombinase	99.84

>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: The homologous-pairing domain of Rad52 recombinase
domain: The homologous-pairing domain of Rad52 recombinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.3e-22  Score=162.08  Aligned_cols=118  Identities=18%  Similarity=0.207  Sum_probs=93.6

Q ss_pred             hHHHHHHHhcCCCCCCCccCCCC---CCcceehhHHHHhhhccccC--CceeeeeeEEEc-----CCC-eEEEEEEEEEE
Q 028375           92 PLVEILRDLNKRIPDNIINPSDN---TSSTFISWYNANRMLSFYAP--GWCGEVRDVIFS-----ENG-SVTVVYRVTLR  160 (210)
Q Consensus        92 PLsEILrdL~kpvPd~~Ik~k~~---~sl~yIPW~~vnr~L~~~aP--gWsgEVrdVi~s-----dg~-~VtVvyRlTI~  160 (210)
                      =..+|++.|++|+|+..|++|++   ..+.||||+.+.++||.++.  ||+.||++++.-     .++ .|.|.+.|.|.
T Consensus        11 ~~~~lq~~L~k~~~~e~Is~R~g~gg~~~~YI~~~~vi~~aNeVFGfdGWs~~i~~~~~d~~d~~~~~~~v~v~a~Vrvt   90 (184)
T d1kn0a_          11 EYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQ   90 (184)
T ss_dssp             HHHHHHHHTTCCBCTTTEEEEECSSSCEEEEECHHHHHHHHHHHHCTTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcccCHHHheeeeCCCCcceeeccHHHHHHHHHHHhCCCCceeEEEEEEeecccccCCceeEEEEEEEEEE
Confidence            36789999999999999999863   67899999999999998864  799999888752     122 24444544444


Q ss_pred             ecCcceeeeecccccCCCC-----CCCChHHHHHHHHHHHHHHHhc--CccccccCC
Q 028375          161 GSDGEAHREATGTVSSSDS-----RITDPVAAAEEIAFCKACARFG--LGLYLYHEE  210 (210)
Q Consensus       161 G~DgeitREatGta~~~D~-----~ygDpvsaAEamAFrRACArFG--LGLYLYhed  210 (210)
                      -.||+ +||++|.....+.     .++++.+.|+++||||||.+||  ||++|||.|
T Consensus        91 lkDGt-~~e~~G~G~~~~~~~k~~a~~~a~KeA~TDAlKRA~~~FGn~lG~~LYdk~  146 (184)
T d1kn0a_          91 LKDGS-YHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKD  146 (184)
T ss_dssp             ETTSC-EEEEEEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTSTTCHH
T ss_pred             EECCE-EEeccccccccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhccHH
Confidence            46774 8899987544432     2578999999999999999999  999999864