Citrus Sinensis ID: 028490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MNAAISMRSRKGLTGTVAADAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLTAESSWDFEM
Secondary Structure (PSIPRED)
cccEEEcccccEEEEEEEEccccEEEEEEEEcccEEcccccEEEEEcccEEEEEEccccccEEEEEEEEEEEccEEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEcccEEEEEEEEEccEEEEcccccccccccEEEEEEEEccccEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEccccccccEEEEEcEEcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEEEEEEcccEEEEEEEcccHEcccccEEEEEEcccEEEEEccccccccEEEEEccEEEccccEEEEEEEccccccEEEEEEEEEcccccEEEEEEEcccccEEEEEEEccccEEEcccccccccccEEEEEEEcccccEEEEEEccccHEEEEEEEEcccccccccEEEEEEEcccccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MNAAISMrsrkgltgtvaaDAGELKLRAYVIAgpalnasdlsfsvekpgsflvdfdvpqknvrfQFMNTARILEKQLYMTYthmtgenrtildgtllldptnkisanyvldsrnlKLRYSYVHrgmatfepcydfgknsWELAVSKtvfdgdvirasyDKSRKVldlgwlwkpsfnrdgkckvsasfrlgeglymptltaesswdfem
Flexible Loop (DISEMBL)
mnaaismrsrkgltgtvaaDAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISanyvldsrnlKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVirasydksrkvldlgwlwkpsfnrdgkCKVSasfrlgeglymptltaesswdfem
Low Complexity Region (SEG)
MNAAISMRSRKGLTGTVAADAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLTAESSWDFEM
Disordered region (IsUnstruct)
***************TVAADAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLT*********
Disordered Region (DISOPRED)
**************GTVAADAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLTAESSWDFEM
Disordered Region (DISEMBL)
***********GLTGTVAADAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLTAESSWDFEM
Disordered Region (DISPRO)
**AAISMRSRKGLTGTVAADAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLTAESSWDFEM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNAAISMRSRKGLTGTVAADAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLTAESSWDFEM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q1H5C9	213	Outer envelope pore prote	yes	no	0.937	0.915	0.490	5e-54
Q8H0Y1	213	Outer envelope pore prote	no	no	0.908	0.887	0.487	1e-52
O49929	213	Outer envelope pore prote	N/A	no	0.923	0.901	0.507	7e-50
B8ANR3	224	Outer envelope pore prote	N/A	no	0.807	0.75	0.415	4e-35
Q75IQ4	224	Outer envelope pore prote	yes	no	0.807	0.75	0.415	1e-34

>sp|Q1H5C9|OP24A_ARATH Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis thaliana GN=OEP24A PE=1 SV=1

 Score =  210 bits (535), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 10  RKGLTGTVAADAGELKLRAYV-----IAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRF 64
           + G   ++  +AG  KLRA +     +AGP+ N   LS +VEKPG F++D++VP+K+VRF
Sbjct: 14  KSGSVASLTFNAGNAKLRATMTDASFVAGPSFNG--LSLAVEKPGFFIIDYNVPKKDVRF 71

Query: 65  QFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHR 124
           QFMNT RI EK L +TY HM G+NRTI+DG+ ++DP NK+SANY++ ++N KL+Y+YVH 
Sbjct: 72  QFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGTKNCKLKYTYVHG 131

Query: 125 GMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVS 184
           G+ATFEPCYD  KN W+ A+S  ++ GD ++A+Y  S K+  LG  W  +    G  KV 
Sbjct: 132 GIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKM--LGLEWSNNSKSTGSFKVC 189

Query: 185 ASFRLGEGLYMPTLTAESSWDFEM 208
           AS  L E L  P LTAE++W+ E+
Sbjct: 190 ASMNLAEELKPPKLTAETTWNLEL 213

High-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates, dicarboxylic acids, ATP, inorganic phosphate (Pi), sugars, and positively or negatively charged amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0Y1|OP24B_ARATH Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis thaliana GN=OEP24B PE=1 SV=1

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 141/199 (70%), Gaps = 10/199 (5%)

Query: 15  GTVAADAGELKLRAY-----VIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNT 69
           G++A +AG++KLRA      ++AGP L  + L+ +VEKPGSF+V+++VP+K+VRFQFMNT
Sbjct: 20  GSLAFNAGDIKLRATMTDATLVAGPTL--TGLALAVEKPGSFIVEYNVPKKDVRFQFMNT 77

Query: 70  ARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATF 129
            RI EK L +TY H   +NRTI+DG+L++D  NK+SAN+++ + N K++Y+Y H G+ATF
Sbjct: 78  VRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTNNCKIKYTYAHGGLATF 137

Query: 130 EPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRL 189
           EPCYD  KN+W+ AVS+  + GD +RA+Y  S K+L + W      N+    KV AS  L
Sbjct: 138 EPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEW---SRNNKASGFKVCASVNL 194

Query: 190 GEGLYMPTLTAESSWDFEM 208
            + L  P LTAE++W+ EM
Sbjct: 195 ADELKTPKLTAETTWNLEM 213

High-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates, dicarboxylic acids, ATP, inorganic phosphate (Pi), sugars, and positively or negatively charged amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|O49929|OEP24_PEA Outer envelope pore protein 24, chloroplastic OS=Pisum sativum GN=OEP24 PE=1 SV=1

 Score =  196 bits (499), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 100/197 (50%), Positives = 132/197 (67%), Gaps = 5/197 (2%)

Query: 15  GTVAADAGELKLRAYVIAGPALNASDLS---FSVEKPGSFLVDFDVPQKNVRFQFMNTAR 71
            TVA +AG++KLRA +      N+  L+    +VEKPGSF VD++VP+K+ RFQFMNT R
Sbjct: 19  ATVAFNAGDVKLRASITDATFKNSPSLTGLVLAVEKPGSFSVDYNVPKKDFRFQFMNTVR 78

Query: 72  ILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEP 131
           + EK L + Y H  G+NRTILDGTL+ DP+NK+SANY ++S N KL+YSY H+G+ T EP
Sbjct: 79  VAEKPLNLAYIHSKGDNRTILDGTLVWDPSNKVSANYAVESGNCKLKYSYNHKGLTTIEP 138

Query: 132 CYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGE 191
            YD  KNSW+ AVS  V+  D ++ASY  S KV  LG  W  +  + G  KV AS  L E
Sbjct: 139 TYDVAKNSWDFAVSGKVYGDDSLKASYQTSSKV--LGLEWTRNSKQTGCFKVVASVNLAE 196

Query: 192 GLYMPTLTAESSWDFEM 208
              +P L+ ES+ +FEM
Sbjct: 197 EKKIPKLSVESTLNFEM 213

High-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates, dicarboxylic acids, ATP, inorganic phosphate (Pi), sugars, and positively or negatively charged amino acids.

Pisum sativum (taxid: 3888)

>sp|B8ANR3|OEP24_ORYSI Outer envelope pore protein 24, chloroplastic OS=Oryza sativa subsp. indica GN=OEP24 PE=3 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 114/190 (60%), Gaps = 22/190 (11%)

Query: 33  GPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTG------ 86
           GP+L    L+ ++EKPGSFL+D     K+VRFQFMN+A +L++++ +TYTH T       
Sbjct: 43  GPSLEG--LTLTLEKPGSFLLDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPA 100

Query: 87  --ENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRG--MATFEPCYDFGKNSWEL 142
               RT LDG+L  DP NK+S ++ L S   +++YSY H    + T EPC+D   N+W+ 
Sbjct: 101 KPPARTALDGSLTFDPANKLSLSHTLGSSGCRVKYSYAHGQDRLTTIEPCFDTANNAWDF 160

Query: 143 AVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKC----KVSASFRLGEGLYMPTL 198
           AV++    GD I+A+Y  S K+L L W       RD K     KV+ASF L +    P L
Sbjct: 161 AVTRKFQGGDAIKATYQASTKLLALDW------TRDSKIGASFKVAASFDLSDQSKAPKL 214

Query: 199 TAESSWDFEM 208
            AES+W++E+
Sbjct: 215 IAESTWNYEI 224

High-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates, dicarboxylic acids, ATP, inorganic phosphate (Pi), sugars, and positively or negatively charged amino acids.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q75IQ4|OEP24_ORYSJ Outer envelope pore protein 24, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP24 PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 113/190 (59%), Gaps = 22/190 (11%)

Query: 33  GPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTG------ 86
           GP+L    L  ++EKPGSFL+D     K+VRFQFMN+A +L++++ +TYTH T       
Sbjct: 43  GPSLEG--LILTLEKPGSFLLDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPA 100

Query: 87  --ENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRG--MATFEPCYDFGKNSWEL 142
               RT LDG+L  DP NK+S ++ L S   +++YSY H    + T EPC+D   N+W+ 
Sbjct: 101 KLPARTALDGSLTFDPANKLSLSHTLGSSGCRVKYSYAHGQDRLTTIEPCFDTANNAWDF 160

Query: 143 AVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKC----KVSASFRLGEGLYMPTL 198
           AV++    GD I+A+Y  S K+L L W       RD K     KV+ASF L +    P L
Sbjct: 161 AVTRKFQGGDAIKATYQASTKLLALDW------TRDSKIGASFKVAASFDLSDQSKAPKL 214

Query: 199 TAESSWDFEM 208
            AES+W++E+
Sbjct: 215 IAESTWNYEI 224

High-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates, dicarboxylic acids, ATP, inorganic phosphate (Pi), sugars, and positively or negatively charged amino acids.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
297852260	214	F27F5.25 [Arabidopsis lyrata subsp. lyra	0.927	0.901	0.509	1e-53
224132122	212	hypothetical protein POPTRDRAFT_573245 [	0.937	0.919	0.514	2e-53
79360075	213	uncharacterized protein [Arabidopsis tha	0.937	0.915	0.490	3e-52
7767669	212	F27F5.25 [Arabidopsis thaliana]	0.937	0.919	0.490	3e-52
297795167	213	hypothetical protein ARALYDRAFT_494707 [	0.908	0.887	0.492	1e-51
18422277	213	uncharacterized protein [Arabidopsis tha	0.908	0.887	0.487	6e-51
9758585	211	unnamed protein product [Arabidopsis tha	0.908	0.895	0.487	6e-51
116831573	214	unknown [Arabidopsis thaliana]	0.908	0.883	0.487	6e-51
356552120	214	PREDICTED: uncharacterized protein LOC10	0.903	0.878	0.505	2e-50
255538596	213	conserved hypothetical protein [Ricinus	0.879	0.859	0.515	2e-50

>gi|297852260|ref|XP_002894011.1| F27F5.25 [Arabidopsis lyrata subsp. lyrata] gi|297339853|gb|EFH70270.1| F27F5.25 [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 144/202 (71%), Gaps = 9/202 (4%)

Query: 12  GLTGTVAADAGELKLRAY-----VIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQF 66
           G   +++ +AG  KLRA      ++AGP+LN   LS +VEKPG F++D++VP+K+VRFQF
Sbjct: 17  GGVASLSFNAGNAKLRATMTDTSLVAGPSLNG--LSLAVEKPGFFIIDYNVPKKDVRFQF 74

Query: 67  MNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGM 126
           MNT RI EK L +TY HM G+NRTI+DG+L++DP NK+SANY++ ++N KL+Y+YVH G+
Sbjct: 75  MNTVRIAEKPLNLTYIHMRGDNRTIVDGSLVIDPANKLSANYMVGTKNCKLKYTYVHGGI 134

Query: 127 ATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSAS 186
           ATFEPCYD  KN W+ AVS+ ++ GD ++A+Y  S K+  LG  W  +    G  KV AS
Sbjct: 135 ATFEPCYDLAKNVWDFAVSRKLYGGDNLKATYQTSSKM--LGLEWSRNSQSTGSFKVCAS 192

Query: 187 FRLGEGLYMPTLTAESSWDFEM 208
             L E L  P LTAE++W+ E+
Sbjct: 193 MNLAEELKPPKLTAETTWNLEI 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132122|ref|XP_002321261.1| hypothetical protein POPTRDRAFT_573245 [Populus trichocarpa] gi|222862034|gb|EEE99576.1| hypothetical protein POPTRDRAFT_573245 [Populus trichocarpa]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 143/204 (70%), Gaps = 9/204 (4%)

Query: 10  RKGLTGTVAADAGELKLRA-----YVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRF 64
           +     TVA +AG++KLRA      V+ GP+LN   L+ +VEKPG F++D++VP+K+ RF
Sbjct: 13  KSSTAATVAFNAGDVKLRASITDATVVNGPSLNG--LALAVEKPGFFIIDYNVPKKDFRF 70

Query: 65  QFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHR 124
           QFMN+ ++++K L +TY H  G+NRTILDGTL++D  NKISANY+L + N KL+Y+YVH 
Sbjct: 71  QFMNSVKVVDKPLNLTYIHCRGDNRTILDGTLVVDSANKISANYMLGTENCKLKYTYVHG 130

Query: 125 GMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVS 184
           G+ +FE CYDF KNSW+ A S+ V+  DV+RA Y  S K  +LG  W  +   +G  KVS
Sbjct: 131 GLTSFEQCYDFAKNSWDFAGSRKVYGDDVLRAVYQTSSK--NLGMEWSRNSKLNGNFKVS 188

Query: 185 ASFRLGEGLYMPTLTAESSWDFEM 208
           AS  L E   MP LTAES+W+FEM
Sbjct: 189 ASINLAEESKMPKLTAESTWNFEM 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79360075|ref|NP_175131.3| uncharacterized protein [Arabidopsis thaliana] gi|122178780|sp|Q1H5C9.1|OP24A_ARATH RecName: Full=Outer envelope pore protein 24A, chloroplastic; AltName: Full=Chloroplastic outer envelope pore protein of 24 kDa A gi|98960939|gb|ABF58953.1| At1g45170 [Arabidopsis thaliana] gi|332193968|gb|AEE32089.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 10  RKGLTGTVAADAGELKLRAYV-----IAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRF 64
           + G   ++  +AG  KLRA +     +AGP+ N   LS +VEKPG F++D++VP+K+VRF
Sbjct: 14  KSGSVASLTFNAGNAKLRATMTDASFVAGPSFNG--LSLAVEKPGFFIIDYNVPKKDVRF 71

Query: 65  QFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHR 124
           QFMNT RI EK L +TY HM G+NRTI+DG+ ++DP NK+SANY++ ++N KL+Y+YVH 
Sbjct: 72  QFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGTKNCKLKYTYVHG 131

Query: 125 GMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVS 184
           G+ATFEPCYD  KN W+ A+S  ++ GD ++A+Y  S K+  LG  W  +    G  KV 
Sbjct: 132 GIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKM--LGLEWSNNSKSTGSFKVC 189

Query: 185 ASFRLGEGLYMPTLTAESSWDFEM 208
           AS  L E L  P LTAE++W+ E+
Sbjct: 190 ASMNLAEELKPPKLTAETTWNLEL 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7767669|gb|AAF69166.1|AC007915_18 F27F5.25 [Arabidopsis thaliana]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 141/204 (69%), Gaps = 9/204 (4%)

Query: 10  RKGLTGTVAADAGELKLRAYV-----IAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRF 64
           + G   ++  +AG  KLRA +     +AGP+ N   LS +VEKPG F++D++VP+K+VRF
Sbjct: 13  KSGSVASLTFNAGNAKLRATMTDASFVAGPSFNG--LSLAVEKPGFFIIDYNVPKKDVRF 70

Query: 65  QFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHR 124
           QFMNT RI EK L +TY HM G+NRTI+DG+ ++DP NK+SANY++ ++N KL+Y+YVH 
Sbjct: 71  QFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGTKNCKLKYTYVHG 130

Query: 125 GMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVS 184
           G+ATFEPCYD  KN W+ A+S  ++ GD ++A+Y  S K+  LG  W  +    G  KV 
Sbjct: 131 GIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKM--LGLEWSNNSKSTGSFKVC 188

Query: 185 ASFRLGEGLYMPTLTAESSWDFEM 208
           AS  L E L  P LTAE++W+ E+
Sbjct: 189 ASMNLAEELKPPKLTAETTWNLEL 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795167|ref|XP_002865468.1| hypothetical protein ARALYDRAFT_494707 [Arabidopsis lyrata subsp. lyrata] gi|297311303|gb|EFH41727.1| hypothetical protein ARALYDRAFT_494707 [Arabidopsis lyrata subsp. lyrata]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/199 (49%), Positives = 141/199 (70%), Gaps = 10/199 (5%)

Query: 15  GTVAADAGELKLRAY-----VIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNT 69
           G++A +AG++KLRA      ++AGP L  + LS +VEKPGSF+++F+VP+K+VRFQFMNT
Sbjct: 20  GSLAFNAGDIKLRATMTDATLVAGPTL--TGLSLAVEKPGSFMIEFNVPKKDVRFQFMNT 77

Query: 70  ARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATF 129
            RI EK L +TY H   +NRTI+DG+L++D  NK+SAN+++ + N KL+Y+Y H G+ATF
Sbjct: 78  VRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTNNCKLKYTYAHGGLATF 137

Query: 130 EPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRL 189
           EPCYD  KN+W+ AVS+  + GD +RA+Y  S K+L + W      N+    KV AS  L
Sbjct: 138 EPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEW---SRNNKASGIKVCASVNL 194

Query: 190 GEGLYMPTLTAESSWDFEM 208
            + +  P LTAE++W+ EM
Sbjct: 195 ADEVKTPKLTAETTWNLEM 213

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422277|ref|NP_568618.1| uncharacterized protein [Arabidopsis thaliana] gi|75151846|sp|Q8H0Y1.1|OP24B_ARATH RecName: Full=Outer envelope pore protein 24B, chloroplastic; AltName: Full=Chloroplastic outer envelope pore protein of 24 kDa B gi|24899671|gb|AAN65050.1| Unknown protein [Arabidopsis thaliana] gi|98961909|gb|ABF59284.1| unknown protein [Arabidopsis thaliana] gi|332007511|gb|AED94894.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 141/199 (70%), Gaps = 10/199 (5%)

Query: 15  GTVAADAGELKLRAY-----VIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNT 69
           G++A +AG++KLRA      ++AGP L  + L+ +VEKPGSF+V+++VP+K+VRFQFMNT
Sbjct: 20  GSLAFNAGDIKLRATMTDATLVAGPTL--TGLALAVEKPGSFIVEYNVPKKDVRFQFMNT 77

Query: 70  ARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATF 129
            RI EK L +TY H   +NRTI+DG+L++D  NK+SAN+++ + N K++Y+Y H G+ATF
Sbjct: 78  VRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTNNCKIKYTYAHGGLATF 137

Query: 130 EPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRL 189
           EPCYD  KN+W+ AVS+  + GD +RA+Y  S K+L + W      N+    KV AS  L
Sbjct: 138 EPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEW---SRNNKASGFKVCASVNL 194

Query: 190 GEGLYMPTLTAESSWDFEM 208
            + L  P LTAE++W+ EM
Sbjct: 195 ADELKTPKLTAETTWNLEM 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758585|dbj|BAB09198.1| unnamed protein product [Arabidopsis thaliana]

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 141/199 (70%), Gaps = 10/199 (5%)

Query: 15  GTVAADAGELKLRAY-----VIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNT 69
           G++A +AG++KLRA      ++AGP L  + L+ +VEKPGSF+V+++VP+K+VRFQFMNT
Sbjct: 18  GSLAFNAGDIKLRATMTDATLVAGPTL--TGLALAVEKPGSFIVEYNVPKKDVRFQFMNT 75

Query: 70  ARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATF 129
            RI EK L +TY H   +NRTI+DG+L++D  NK+SAN+++ + N K++Y+Y H G+ATF
Sbjct: 76  VRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTNNCKIKYTYAHGGLATF 135

Query: 130 EPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRL 189
           EPCYD  KN+W+ AVS+  + GD +RA+Y  S K+L + W      N+    KV AS  L
Sbjct: 136 EPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEW---SRNNKASGFKVCASVNL 192

Query: 190 GEGLYMPTLTAESSWDFEM 208
            + L  P LTAE++W+ EM
Sbjct: 193 ADELKTPKLTAETTWNLEM 211

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831573|gb|ABK28739.1| unknown [Arabidopsis thaliana]

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 141/199 (70%), Gaps = 10/199 (5%)

Query: 15  GTVAADAGELKLRAY-----VIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNT 69
           G++A +AG++KLRA      ++AGP L  + L+ +VEKPGSF+V+++VP+K+VRFQFMNT
Sbjct: 20  GSLAFNAGDIKLRATMTDATLVAGPTL--TGLALAVEKPGSFIVEYNVPKKDVRFQFMNT 77

Query: 70  ARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATF 129
            RI EK L +TY H   +NRTI+DG+L++D  NK+SAN+++ + N K++Y+Y H G+ATF
Sbjct: 78  VRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTNNCKIKYTYAHGGLATF 137

Query: 130 EPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRL 189
           EPCYD  KN+W+ AVS+  + GD +RA+Y  S K+L + W      N+    KV AS  L
Sbjct: 138 EPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEW---SRNNKASGFKVCASVNL 194

Query: 190 GEGLYMPTLTAESSWDFEM 208
            + L  P LTAE++W+ EM
Sbjct: 195 ADELKTPKLTAETTWNLEM 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552120|ref|XP_003544418.1| PREDICTED: uncharacterized protein LOC100802815 [Glycine max]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/198 (50%), Positives = 135/198 (68%), Gaps = 10/198 (5%)

Query: 17  VAADAGELKLRAYV-----IAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTAR 71
           +A +AG++K RA V     I GP+L  + L+ +VEKPGSF+VD++VP+K+ RFQFMNT R
Sbjct: 21  IAVNAGDVKFRASVTEATFINGPSL--TGLALAVEKPGSFIVDYNVPKKDFRFQFMNTVR 78

Query: 72  ILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEP 131
           + E+ L +TY H  G+NRT+LDGT + D  NK+SANY LDS N KL+Y+YVH+G+ TFEP
Sbjct: 79  VGERPLNLTYAHSRGDNRTVLDGTFVYDSANKVSANYALDSGNCKLKYTYVHKGLTTFEP 138

Query: 132 CYDFGKNSWELAVSKTVFDG-DVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLG 190
            YD  KN+W+ AVS+ V+ G D +RASY  S +VL + W   P        K+ AS  L 
Sbjct: 139 AYDVAKNTWDFAVSRRVYGGDDTLRASYQTSSRVLGVEWSRNPK--HTAGFKIVASVNLA 196

Query: 191 EGLYMPTLTAESSWDFEM 208
           E    P L AE++W+FEM
Sbjct: 197 EEFKAPKLVAETTWNFEM 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538596|ref|XP_002510363.1| conserved hypothetical protein [Ricinus communis] gi|223551064|gb|EEF52550.1| conserved hypothetical protein [Ricinus communis]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 134/192 (69%), Gaps = 9/192 (4%)

Query: 22  GELKLRA-----YVIAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQ 76
           G++KLRA      V+ GP+LN   L  +VEKPG F+VD++VP+K+ RFQFM+T ++ +K 
Sbjct: 26  GDVKLRASMTDATVVKGPSLNG--LVLAVEKPGFFMVDYNVPKKDFRFQFMSTIKVADKP 83

Query: 77  LYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPCYDFG 136
           L +TY H  G+NRT+LDG L+LD  NK++AN++L S N KL+Y+YVH G+ TFEPCYD  
Sbjct: 84  LNLTYIHSRGDNRTVLDGALVLDSANKLAANHILGSGNCKLKYTYVHGGVTTFEPCYDLA 143

Query: 137 KNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMP 196
           KNSW+ AVS+ V+  DV RA+Y  S K L L W     FN  G  K++AS  L E   +P
Sbjct: 144 KNSWDFAVSRKVYADDVFRATYQTSSKALGLEWSRNSKFN--GNFKIAASVNLAEESKVP 201

Query: 197 TLTAESSWDFEM 208
            L+AES+W+FEM
Sbjct: 202 KLSAESTWNFEM 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2028210	213	AT1G45170 "AT1G45170" [Arabido	0.937	0.915	0.490	3.6e-50
TAIR|locus:2160051	213	AT5G42960 "AT5G42960" [Arabido	0.908	0.887	0.487	2.3e-48
UNIPROTKB|O49929	213	OEP24 "Outer envelope pore pro	0.918	0.896	0.515	2.3e-46

TAIR|locus:2028210 AT1G45170 "AT1G45170" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 100/204 (49%), Positives = 141/204 (69%)

Query:    10 RKGLTGTVAADAGELKLRAYV-----IAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRF 64
             + G   ++  +AG  KLRA +     +AGP+ N   LS +VEKPG F++D++VP+K+VRF
Sbjct:    14 KSGSVASLTFNAGNAKLRATMTDASFVAGPSFNG--LSLAVEKPGFFIIDYNVPKKDVRF 71

Query:    65 QFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHR 124
             QFMNT RI EK L +TY HM G+NRTI+DG+ ++DP NK+SANY++ ++N KL+Y+YVH 
Sbjct:    72 QFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGTKNCKLKYTYVHG 131

Query:   125 GMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVS 184
             G+ATFEPCYD  KN W+ A+S  ++ GD ++A+Y  S K+L L W    +    G  KV 
Sbjct:   132 GIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKMLGLEW--SNNSKSTGSFKVC 189

Query:   185 ASFRLGEGLYMPTLTAESSWDFEM 208
             AS  L E L  P LTAE++W+ E+
Sbjct:   190 ASMNLAEELKPPKLTAETTWNLEL 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2160051 AT5G42960 "AT5G42960" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 97/199 (48%), Positives = 140/199 (70%)

Query:    15 GTVAADAGELKLRAYV-----IAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNT 69
             G++A +AG++KLRA +     +AGP L    L+ +VEKPGSF+V+++VP+K+VRFQFMNT
Sbjct:    20 GSLAFNAGDIKLRATMTDATLVAGPTLTG--LALAVEKPGSFIVEYNVPKKDVRFQFMNT 77

Query:    70 ARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATF 129
              RI EK L +TY H   +NRTI+DG+L++D  NK+SAN+++ + N K++Y+Y H G+ATF
Sbjct:    78 VRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTNNCKIKYTYAHGGLATF 137

Query:   130 EPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRL 189
             EPCYD  KN+W+ AVS+  + GD +RA+Y  S K+L + W      N+    KV AS  L
Sbjct:   138 EPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEWSRN---NKASGFKVCASVNL 194

Query:   190 GEGLYMPTLTAESSWDFEM 208
              + L  P LTAE++W+ EM
Sbjct:   195 ADELKTPKLTAETTWNLEM 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|O49929 OEP24 "Outer envelope pore protein 24, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 101/196 (51%), Positives = 133/196 (67%)

Query:    16 TVAADAGELKLRAYVIAGPALNASDLS---FSVEKPGSFLVDFDVPQKNVRFQFMNTARI 72
             TVA +AG++KLRA +      N+  L+    +VEKPGSF VD++VP+K+ RFQFMNT R+
Sbjct:    20 TVAFNAGDVKLRASITDATFKNSPSLTGLVLAVEKPGSFSVDYNVPKKDFRFQFMNTVRV 79

Query:    73 LEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPC 132
              EK L + Y H  G+NRTILDGTL+ DP+NK+SANY ++S N KL+YSY H+G+ T EP 
Sbjct:    80 AEKPLNLAYIHSKGDNRTILDGTLVWDPSNKVSANYAVESGNCKLKYSYNHKGLTTIEPT 139

Query:   133 YDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEG 192
             YD  KNSW+ AVS  V+  D ++ASY  S KVL L W  + S  + G  KV AS  L E 
Sbjct:   140 YDVAKNSWDFAVSGKVYGDDSLKASYQTSSKVLGLEWT-RNS-KQTGCFKVVASVNLAEE 197

Query:   193 LYMPTLTAESSWDFEM 208
               +P L+ ES+ +FEM
Sbjct:   198 KKIPKLSVESTLNFEM 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      208       208   0.00077  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  175 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.83u 0.12s 17.95t   Elapsed:  00:00:01
  Total cpu time:  17.83u 0.12s 17.95t   Elapsed:  00:00:01
  Start:  Mon May 20 18:18:33 2013   End:  Mon May 20 18:18:34 2013

GO:0015288 "porin activity" evidence=IDA

GO:0022843 "voltage-gated cation channel activity" evidence=IDA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0034426 "etioplast membrane" evidence=IDA

GO:0034765 "regulation of ion transmembrane transport" evidence=IDA

GO:0046930 "pore complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49929	OEP24_PEA	No assigned EC number	0.5076	0.9230	0.9014	N/A	no
Q1H5C9	OP24A_ARATH	No assigned EC number	0.4901	0.9375	0.9154	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	92.97

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=92.97  E-value=4.7  Score=33.57  Aligned_cols=159  Identities=16%  Similarity=0.203  Sum_probs=93.1

Q ss_pred             cCceeEEEEEeeCCccCcCccEEEEe---cCc------eEEEeeeCCCCCeEEEEeeeeeecceeeeEEEeeecCCceeE
Q 028490           21 AGELKLRAYVIAGPALNASDLSFSVE---KPG------SFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTI   91 (208)
Q Consensus        21 aGdlklrAsf~~GpsL~~~GLsL~vE---KPG------sF~iDydv~~~d~rFQFmnt~~V~~K~lnlTYtH~~~~nrT~   91 (208)
                      -+++++.+.+..- -..  ||.+.++   .|+      .+.+||.-+.-...+++.|..   ...+.++|..+.. .+-.
T Consensus        73 d~~~~~~~~~~~~-~~~--~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~---~~~~~~s~~~~v~-~~~~  145 (273)
T PF01459_consen   73 DNDGNLEASVRNK-LSP--GLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDN---NPIFNASYVQSVT-PNLA  145 (273)
T ss_dssp             TTEEEEEEEEESS-TTT--TEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEEST---S-EEEEEEEEEET--TEE
T ss_pred             CCcccEEEEEecc-cCc--ceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccC---CCcEEEEEEEecc-ccEE
Confidence            4455566655432 122  4444432   233      345666666655666666521   5568888888644 4678


Q ss_pred             EeeEEEecCCCc-ee-----EEEEee-------------CCCeeEEEEEEeC---Ce-eeeeeecccCcc--eeeeEEEE
Q 028490           92 LDGTLLLDPTNK-IS-----ANYVLD-------------SRNLKLRYSYVHR---GM-ATFEPCYDFGKN--SWELAVSK  146 (208)
Q Consensus        92 lDgtl~~D~aNK-ls-----~~y~~~-------------s~n~klKYsYvH~---g~-tt~EP~yD~~~n--sWdfavs~  146 (208)
                      |=+.+++|..++ +.     ++|.-.             .....+.=||.|.   .+ .-.|=.++..++  ...+++.+
T Consensus       146 lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~  225 (273)
T PF01459_consen  146 LGAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQY  225 (273)
T ss_dssp             EEEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEE
T ss_pred             EEEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEE
Confidence            888899888863 43     444443             2345566778776   21 334445555554  55566677


Q ss_pred             EecCCCeEEEEEecCceeEEEEEeeCCCCCCCCceEEEEEEec
Q 028490          147 TVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRL  189 (208)
Q Consensus       147 kv~~~d~vratY~~s~k~lgleWsr~s~~~~~G~fKv~a~~~L  189 (208)
                      ++.+...+|+..++..+ +++-+...-..  +=.+-+++.++.
T Consensus       226 ~l~~~~~vk~kvds~g~-v~~~~~~~l~~--~~~l~ls~~~d~  265 (273)
T PF01459_consen  226 KLDDSSTVKAKVDSNGR-VSASYEQKLNP--GVTLTLSAELDH  265 (273)
T ss_dssp             EECTTEEEEEEEETTSE-EEEEEEEEECT--TEEEEEEEEECT
T ss_pred             EcCcccEEEEEEcCCCE-EEEEEEEecCC--CcEEEEEEEEcc
Confidence            77777799999999887 44444443322  115777777666

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00