Citrus Sinensis ID: 028491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccccccccHHHHHHHccccccccEEEEccccHHHHHHHHHHHccccEEEEEccccccEEEEEEEHHHHHHHHHHcccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHEHccHHHHHHccccccHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHcccEEEEEEccccccEEEEEEEHHHHHHHHHHcccccccccHHHHccccccEEEEcccccHHHHHHHHHHccccEcEEEcccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MQGMIKGVRTCQEILKGAILehhqgryvvegrktcsrfgcvissssspteekglenISVAEVLMTkgddkvgswlccrsdDTVEDAVKNMAQHNigslvvlkpgeqqhiagIFTERDYLRKIVgqgrspkyTRVAEIMtdenklitlpsdANILHAMQLMTDkhirhvpvidgriVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY
Flexible Loop (DISEMBL)
MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFgcvissssspteekgleNISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIgslvvlkpgeQQHIAGIFTERDYLRKIVgqgrspkytrvAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEqqkgelkrlnefirgeyy
Low Complexity Region (SEG)
MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY
Disordered region (IsUnstruct)
****IKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVI**************ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEF******
Disordered Region (DISOPRED)
*****************AILEHHQGRYVVEG****************************AEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIR****
Disordered Region (DISEMBL)
MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVIS**********LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY
Disordered Region (DISPRO)
*QGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q9LEV3	206	CBS domain-containing pro	no	no	0.975	0.985	0.528	3e-55
P50100	196	Uncharacterized protein M	yes	no	0.5	0.530	0.351	4e-11
Q58069	194	Uncharacterized protein M	yes	no	0.480	0.515	0.339	8e-11
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.557	0.707	0.322	3e-10
P42851	485	Inosine-5'-monophosphate	no	no	0.524	0.224	0.310	8e-08
P54606	140	CBS domain-containing pro	yes	no	0.475	0.707	0.320	2e-07
Q9SJQ5	536	CBS domain-containing pro	no	no	0.461	0.179	0.297	6e-07
O06186	143	Hypoxic response protein	no	no	0.596	0.867	0.269	1e-06
Q9LF97	556	CBS domain-containing pro	no	no	0.591	0.221	0.263	1e-06
O67820	490	Inosine-5'-monophosphate	yes	no	0.5	0.212	0.330	2e-06

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score =  214 bits (545), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/210 (52%), Positives = 151/210 (71%), Gaps = 7/210 (3%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPT--EEKGLENIS 58
           MQG+I+   +   ++KG++L+H +   V+      S F C  S S+ P   EE G E+ +
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLR---VINPAIQPSVF-CSRSESTQPARMEESGFESTT 56

Query: 59  VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
           +++V+ +KG    GSWL C +DDTV DAVK+M QHN+G+LVV+KPGEQQ +AGI TERDY
Sbjct: 57  ISDVMKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDY 116

Query: 119 LRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVG 177
           LRKI+ QGRS K T+V +IMT+ENKLIT+  +  +L AMQLMTD  IRH+PVI D  ++G
Sbjct: 117 LRKIIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIG 176

Query: 178 MISIVDVVRAVVEQQKGELKRLNEFIRGEY 207
           M+SI DVVRAVV + + EL+RLN +I+G Y
Sbjct: 177 MVSIGDVVRAVVHEHREELQRLNAYIQGGY 206

Arabidopsis thaliana (taxid: 3702)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 70/111 (63%), Gaps = 7/111 (6%)

Query: 79  SDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIM 138
           ++  VE A K M +H IGS+V++   E+    GI TERD + K+V QG++P      +IM
Sbjct: 20  TETAVEIAYK-MREHGIGSVVIV--NEKDEPIGIITERDLVIKVVSQGKNPDEVIARDIM 76

Query: 139 TDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           +    +IT+  D  +  A++LM DK IR +P++D  G+++G++++ D+++ 
Sbjct: 77  S--QPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQV 125

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 6/106 (5%)

Query: 82  TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
           ++ D    M ++NIG++V++   E     GI TERD ++++V +   PK     E+M+  
Sbjct: 25  SIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVVSKNLKPKDVLAEEVMS-- 79

Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVR 186
            K+IT+P +A+I  A ++M    I+ +PV+ DG +VG+++  D+VR
Sbjct: 80  KKIITIPQNASITEAAKIMATHGIKRLPVVKDGELVGIVTQSDIVR 125

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 11/127 (8%)

Query: 82  TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG-RSPKYTRVAEIMTD 140
           T+ +A K M +HN+GSLVV+    Q  + GI TERD ++    +   SP    V + MT 
Sbjct: 21  TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERDIVKAASNRDIDSP----VEKYMTK 74

Query: 141 ENKLITLPSDANILHAMQLMTDKHIRHVPVI--DGRIVGMISIVDVVRAVVEQQKGELKR 198
           + K +T   D  +  A+ +M +   RH+P+I  +G++ G++SI D+ RA+++    +  +
Sbjct: 75  DVKGVT--EDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARALLDVHTMQFGK 132

Query: 199 LNEFIRG 205
             E ++G
Sbjct: 133 PAEEVKG 139

Acidianus ambivalens (taxid: 2283)

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 57.0 bits (136), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 20/129 (15%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +    D+T++ A+  M +H I  L V+   E+  + GI T++D   +   +GR+     V
Sbjct: 104 ITIAPDETIDYALFLMEKHGIDGLPVV---EEDRVVGIITKKDIAAR---EGRT-----V 152

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI--DGRIVGMISIVDVV-----RA 187
            E+MT E  +IT+P   ++  A+++M +  I  +PV+  DG++VG+I++ D+V     + 
Sbjct: 153 KELMTRE--VITVPESVDVEEALKIMMENRIDRLPVVNEDGKLVGLITMSDLVARKKYKN 210

Query: 188 VVEQQKGEL 196
            V  +KGEL
Sbjct: 211 AVRNEKGEL 219

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P54606|YHCV_BACSU CBS domain-containing protein YhcV OS=Bacillus subtilis (strain 168) GN=yhcV PE=4 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 64/106 (60%), Gaps = 7/106 (6%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           + T+++A   M QHN+G++ V+   EQ  + G+ T+RD   +   QGR  + T V+E+M+
Sbjct: 18  NQTIQEAASLMKQHNVGAIPVV---EQGVLKGMLTDRDIALRTTAQGRDGQ-TPVSEVMS 73

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDV 184
            E  L++   + ++  A QLM    IR +P++D   +VG++++ D+
Sbjct: 74  TE--LVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLVGIVALGDL 117

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 82  TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
           TV DA + MA   + +  VL       ++GI T++D   +++ +G  P++T V+++MT  
Sbjct: 78  TVFDACRRMAARRVDA--VLLTDSSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMTRN 135

Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISI 181
              +T  SD+  + A+Q M     RH+PV+ +G ++ ++ I
Sbjct: 136 PIFVT--SDSLAIEALQKMVQGKFRHLPVVENGEVIALLDI 174

Arabidopsis thaliana (taxid: 3702)

>sp|O06186|HRP1_MYCTU Hypoxic response protein 1 OS=Mycobacterium tuberculosis GN=hrp1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 6/130 (4%)

Query: 64  MTKGDDKVGSWLCCRSD-DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122
           MT   D + + + C  + +T+  A + M +H+IG+L +   G+   + G+ T+RD + K 
Sbjct: 1   MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKG 58

Query: 123 VGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISI 181
           +  G  P      E+  D   +  + ++A+I   + +M +  +R VPVI + R+VG+++ 
Sbjct: 59  LAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTE 116

Query: 182 VDVVRAVVEQ 191
            D+ R + E 
Sbjct: 117 ADIARHLPEH 126

Unlike some other CBS-domain containing proteins does not seem to bind AMP.

Mycobacterium tuberculosis (taxid: 1773)

>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 81  DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTD 140
           D V  A K M    + S+++        I+GI T +D L ++V Q  SP+ T V ++MT 
Sbjct: 248 DPVSVAAKRMRDLRVNSVII---STGNKISGILTSKDILMRVVAQNLSPELTLVEKVMTP 304

Query: 141 ENKLITLPSDANILHAMQLMTDKHIRHVPVI--DGRIVGMISIVDVVRA---VVEQQKGE 195
             +  +L  +  IL A+  M D    H+P+I  DG     + ++ +  A   +VE   G 
Sbjct: 305 NPECASL--ETTILDALHTMHDGKFLHLPIIDKDGSAAACVDVLQITHAAISMVENSSGA 362

Query: 196 LKRLNEFIRGEYY 208
           +  +   +  +++
Sbjct: 363 VNDMANTMMQKFW 375

Arabidopsis thaliana (taxid: 3702)

>sp|O67820|IMDH_AQUAE Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 11/115 (9%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR- 133
           +  + D  V++A+  MA++ I  + V+   E++ + GI T RD LR I    +   Y++ 
Sbjct: 101 VTVKPDTRVKEALDIMAKYKISGVPVVD--EERKLIGILTNRD-LRFI----KPEDYSKP 153

Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVR 186
           V+E MT EN LIT P    +  A ++     I  +P++D  G+I G+I+I D+V+
Sbjct: 154 VSEFMTKEN-LITAPEGITLDEAEEIFRKYKIEKLPIVDKEGKIKGLITIKDIVK 207

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
255538678	205	conserved hypothetical protein [Ricinus	0.985	1.0	0.711	4e-80
224085680	201	predicted protein [Populus trichocarpa]	0.966	1.0	0.706	5e-80
224062121	209	predicted protein [Populus trichocarpa]	0.966	0.961	0.707	9e-76
225458255	207	PREDICTED: CBS domain-containing protein	0.990	0.995	0.674	4e-75
356518816	205	PREDICTED: CBS domain-containing protein	0.985	1.0	0.644	3e-69
356509678	205	PREDICTED: CBS domain-containing protein	0.985	1.0	0.634	9e-69
297846924	192	hypothetical protein ARALYDRAFT_314186 [	0.826	0.895	0.664	3e-64
186489216	193	Cystathionine beta-synthase (CBS) family	0.831	0.896	0.649	1e-63
449469967	206	PREDICTED: CBS domain-containing protein	0.985	0.995	0.564	2e-55
257209020	205	Arabidopsis protein targeted to mitochon	0.980	0.995	0.533	2e-54

>gi|255538678|ref|XP_002510404.1| conserved hypothetical protein [Ricinus communis] gi|223551105|gb|EEF52591.1| conserved hypothetical protein [Ricinus communis]

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 175/208 (84%), Gaps = 3/208 (1%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVA 60
           MQG+I+GVR+C+EILK     H  G+ + E +   SRFGCV SS S P  +KGLEN++VA
Sbjct: 1   MQGLIRGVRSCKEILKIGTQRHSHGKEIFERKNIFSRFGCVTSSPSLP--QKGLENLTVA 58

Query: 61  EVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           +VLMTKGD+K GSWL C S+DTV DAVKNMA++NIGSL+VLKPGE+ H+AGI TERDYLR
Sbjct: 59  DVLMTKGDEKTGSWLWCHSNDTVYDAVKNMAENNIGSLLVLKPGEK-HLAGIITERDYLR 117

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMIS 180
           K++ +GRS  YTRVAEIMTDEN+L+T+ SD  IL AMQLMTD HIRHVPVIDGRIVGMIS
Sbjct: 118 KVIAEGRSCHYTRVAEIMTDENRLVTVTSDTTILRAMQLMTDHHIRHVPVIDGRIVGMIS 177

Query: 181 IVDVVRAVVEQQKGELKRLNEFIRGEYY 208
           +VDVVRAVVEQQ GELK+LN+FIRGEYY
Sbjct: 178 MVDVVRAVVEQQSGELKQLNDFIRGEYY 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085680|ref|XP_002307661.1| predicted protein [Populus trichocarpa] gi|222857110|gb|EEE94657.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 147/208 (70%), Positives = 178/208 (85%), Gaps = 7/208 (3%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVA 60
           M+G+++G+R+CQE L+ AIL+H + R     R+  SRFG V  +SS P  EKGLEN++VA
Sbjct: 1   MEGLVRGIRSCQETLRVAILKHPRDR-----REIFSRFGRV--TSSLPVREKGLENLTVA 53

Query: 61  EVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           +VLMTKG+DK+GSWL CR+ D+V DAV+NMA++NIGSLVVLKPGEQ+ IAGI TERDY+R
Sbjct: 54  DVLMTKGEDKIGSWLWCRTTDSVYDAVENMAKNNIGSLVVLKPGEQELIAGIITERDYMR 113

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMIS 180
           KI+ QGRS KYTRV EIMTDE+KL+T+ SD +IL AMQLMTD HIRHVPVIDG+IVGM+S
Sbjct: 114 KIIAQGRSSKYTRVGEIMTDEDKLVTVTSDTSILQAMQLMTDHHIRHVPVIDGKIVGMVS 173

Query: 181 IVDVVRAVVEQQKGELKRLNEFIRGEYY 208
           IVDVVRAVVEQQ GELKRLNEFI+GEYY
Sbjct: 174 IVDVVRAVVEQQGGELKRLNEFIKGEYY 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062121|ref|XP_002300765.1| predicted protein [Populus trichocarpa] gi|222842491|gb|EEE80038.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 170/205 (82%), Gaps = 4/205 (1%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVA 60
           MQG+++GVR+CQE L+ AIL H   R ++E RK  S  GCV  +SS P  EKGLEN++VA
Sbjct: 1   MQGLVQGVRSCQETLRVAILRHPHVRDIIERRKILSHSGCV--TSSPPVGEKGLENLTVA 58

Query: 61  EVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           +VL+TKG++K+GSWL CR+ DTV DAVKNMAQ+NIGSLVVL  GE++ IAGI TERDYLR
Sbjct: 59  DVLVTKGEEKLGSWLWCRTTDTVYDAVKNMAQNNIGSLVVL--GERELIAGIITERDYLR 116

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMIS 180
           KI+ QGRS KYTRV EIMTDENKLIT+ SD NIL AM+LMTD HIRHVPVIDG I GM+S
Sbjct: 117 KIIAQGRSSKYTRVGEIMTDENKLITVASDTNILQAMKLMTDNHIRHVPVIDGTIAGMVS 176

Query: 181 IVDVVRAVVEQQKGELKRLNEFIRG 205
           +VDVVRAVVEQQ  ELKRLNEFI+G
Sbjct: 177 MVDVVRAVVEQQGRELKRLNEFIKG 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458255|ref|XP_002281327.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Vitis vinifera]

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 171/209 (81%), Gaps = 3/209 (1%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPT-EEKGLENISV 59
           MQG+ +  R+CQE LK AIL+H  GR     +   SR  CV  ++S+PT E+KGLEN +V
Sbjct: 1   MQGIGRATRSCQETLKLAILQHCHGRSTAGRKNVFSRHECV--TTSNPTMEQKGLENTTV 58

Query: 60  AEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL 119
           AEVLMTKG++K GSWL CR++DTV DA K+MA++NIGSLVVLKPGE +HIAGIFTERDY+
Sbjct: 59  AEVLMTKGEEKSGSWLWCRTNDTVYDAAKHMAENNIGSLVVLKPGEPKHIAGIFTERDYM 118

Query: 120 RKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMI 179
           RKI+  GRS K T+V EIMTDENKL+T+ SD NIL AMQL+T+  IRHVPVIDG+IVGMI
Sbjct: 119 RKIIAHGRSSKDTKVGEIMTDENKLVTVSSDTNILQAMQLLTEYQIRHVPVIDGKIVGMI 178

Query: 180 SIVDVVRAVVEQQKGELKRLNEFIRGEYY 208
           SIVD+VRAVVE Q GE+KRLNEFI+G+YY
Sbjct: 179 SIVDIVRAVVELQSGEVKRLNEFIKGDYY 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518816|ref|XP_003528073.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like [Glycine max]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 134/208 (64%), Positives = 165/208 (79%), Gaps = 3/208 (1%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVA 60
           M G+ + +R  Q    GAI +  QG  ++   K  S FGCV  +SS   ++KGLEN++V+
Sbjct: 1   MLGVYRILRLRQNPPSGAIFQRFQGNGILNLNKIYSNFGCV--TSSPRMQQKGLENVTVS 58

Query: 61  EVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           EVLMTKG++ VGSWL CR+DD V +A+KNMA +NIGSLVVLKP E QHIAGI TERD L+
Sbjct: 59  EVLMTKGEENVGSWLWCRADDAVVNAMKNMADNNIGSLVVLKP-EGQHIAGIVTERDCLK 117

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMIS 180
           KIV QGRSP +T+V +IMTDEN LIT+ SD NIL AM++MT+ HIRHVPVIDG+IVGMIS
Sbjct: 118 KIVAQGRSPLHTQVGQIMTDENNLITVTSDTNILKAMKIMTENHIRHVPVIDGKIVGMIS 177

Query: 181 IVDVVRAVVEQQKGELKRLNEFIRGEYY 208
           IVDVVRAV+EQQ GELKRLN++IRG+YY
Sbjct: 178 IVDVVRAVMEQQSGELKRLNDYIRGQYY 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509678|ref|XP_003523573.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like [Glycine max]

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 165/208 (79%), Gaps = 3/208 (1%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVA 60
           M G+ + +R  Q   +GAI +  QG+ ++   K  S+FGC  ++SS   ++KGLEN++V+
Sbjct: 1   MLGVYRILRLRQNPQRGAIFQQFQGKGILNLNKIYSKFGC--ATSSPRMQQKGLENVTVS 58

Query: 61  EVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           EVLMTKG+  VGSWL CR DD V +A+KNMA +NIGSLVVLKP E QHIAGI TERD L+
Sbjct: 59  EVLMTKGEANVGSWLWCRVDDAVINAMKNMADNNIGSLVVLKP-EGQHIAGIITERDCLK 117

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMIS 180
           KIV QGRSP +T V +IMTDEN LIT+ S+ NIL AM++MT+ HIRHVPVIDG+IVGMIS
Sbjct: 118 KIVAQGRSPLHTHVGQIMTDENNLITVTSNTNILQAMKIMTENHIRHVPVIDGKIVGMIS 177

Query: 181 IVDVVRAVVEQQKGELKRLNEFIRGEYY 208
           IVDVVRAV+EQQ GELKRLN+++RGEYY
Sbjct: 178 IVDVVRAVMEQQSGELKRLNDYVRGEYY 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846924|ref|XP_002891343.1| hypothetical protein ARALYDRAFT_314186 [Arabidopsis lyrata subsp. lyrata] gi|297337185|gb|EFH67602.1| hypothetical protein ARALYDRAFT_314186 [Arabidopsis lyrata subsp. lyrata]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 148/176 (84%), Gaps = 4/176 (2%)

Query: 33  KTCSRFGCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQ 92
           K  + FGCV   +S P  EKGLEN++VA+VL TK D  V +W+ CR++DTV DAVKNMA+
Sbjct: 21  KVSASFGCV---TSPPPPEKGLENLTVADVLSTK-DADVDTWISCRTNDTVSDAVKNMAK 76

Query: 93  HNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152
           HNIGSLVVLKPG+QQ+IAGI TERDY++KI+G GRS K T+V ++MTDE+KL+T+ S  N
Sbjct: 77  HNIGSLVVLKPGDQQYIAGIVTERDYMKKIIGAGRSSKLTKVGDVMTDESKLVTVSSGTN 136

Query: 153 ILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY 208
           I+ AMQLM++ HIRHVPVIDG+IVG+IS+VDVVRA+V+ Q GELKRLNEFI+G+YY
Sbjct: 137 IIKAMQLMSENHIRHVPVIDGKIVGLISMVDVVRAIVDHQNGELKRLNEFIKGDYY 192

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186489216|ref|NP_001117443.1| Cystathionine beta-synthase (CBS) family protein [Arabidopsis thaliana] gi|332194027|gb|AEE32148.1| Cystathionine beta-synthase (CBS) family protein [Arabidopsis thaliana]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 149/177 (84%), Gaps = 4/177 (2%)

Query: 32  RKTCSRFGCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMA 91
           RK  + FGC+   +S P  EKGLEN++VA+VL TK D  + +W+ CR++DTV DAVKNMA
Sbjct: 21  RKVSAGFGCL---TSPPPPEKGLENLTVADVLSTK-DTDIDTWISCRTNDTVSDAVKNMA 76

Query: 92  QHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDA 151
           +HNIGSLVVL+PG+QQ+IAGI TERDY++KI+G GRS K T+V E+MTDE+KL+T+ S  
Sbjct: 77  KHNIGSLVVLEPGDQQYIAGIVTERDYMKKIIGAGRSSKLTKVGEVMTDESKLVTVSSGT 136

Query: 152 NILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY 208
           NI+ AMQLM++ HIRHVPVIDG+IVG+IS+VDVV+A+V+ Q GELKRLNEFI+G+YY
Sbjct: 137 NIIKAMQLMSENHIRHVPVIDGKIVGLISMVDVVKAIVDHQNGELKRLNEFIKGDYY 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469967|ref|XP_004152690.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like [Cucumis sativus] gi|449520034|ref|XP_004167039.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like [Cucumis sativus]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/209 (56%), Positives = 154/209 (73%), Gaps = 4/209 (1%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVA 60
           MQG+++ VR+ QE LK   +  H   Y  E  K  +    +     S +  K LENI+V 
Sbjct: 1   MQGVMRAVRSWQETLKKITVMQHS--YRREMSKVKNILEGLELEGGSSSSLKSLENITVR 58

Query: 61  EVLMTKGDDKVGS-WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL 119
           E++  KG+  +GS W+ CR++DT  DAV+NMA+HNIGSLVV+K  E ++IAGI TERDYL
Sbjct: 59  EIVSKKGEGGIGSSWISCRAEDTAIDAVQNMARHNIGSLVVMKS-EGENIAGIVTERDYL 117

Query: 120 RKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMI 179
           +KI+  GRSP YT+V EIMT E+KL+T+ SD NIL AMQLMT+ HIRH+PVIDG++VGMI
Sbjct: 118 KKIIADGRSPIYTKVGEIMTHEDKLVTITSDTNILKAMQLMTENHIRHIPVIDGKLVGMI 177

Query: 180 SIVDVVRAVVEQQKGELKRLNEFIRGEYY 208
           SIVDV RAVV+QQ GEL++LN +I+GEYY
Sbjct: 178 SIVDVARAVVKQQNGELEQLNNYIKGEYY 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257209020|emb|CBB36496.1| Arabidopsis protein targeted to mitochondria proteins At5g10860 [Saccharum hybrid cultivar R570]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 148/208 (71%), Gaps = 4/208 (1%)

Query: 1   MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVA 60
           MQ  ++ VR+   +LK A+L+H             SRF   +S+SS+  E+ G E  +V+
Sbjct: 1   MQRAVQAVRSHGSVLKYAVLQHISAPKPAMLPAVFSRF---MSASSARLEDSGFETATVS 57

Query: 61  EVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           +VL +KG    GSWL C ++DTV DAVK+M QHN+G+LVV+KPGE + IAGI TERDYLR
Sbjct: 58  DVLKSKGKSADGSWLWCTTEDTVYDAVKSMTQHNVGALVVVKPGEDKSIAGIVTERDYLR 117

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMI 179
           KI+ QGRS K T+V +IMT+ENKLIT+  +  +L AMQLMTD  IRH+PVIDG  ++GM+
Sbjct: 118 KIIVQGRSSKSTKVGDIMTEENKLITVNPNTKVLQAMQLMTDNRIRHIPVIDGTGMLGMV 177

Query: 180 SIVDVVRAVVEQQKGELKRLNEFIRGEY 207
           SI DVVRAVV + + EL RLN++I+G Y
Sbjct: 178 SIGDVVRAVVAEHREELNRLNDYIQGGY 205

Source: Saccharum hybrid cultivar R570

Species: Saccharum hybrid cultivar

Genus: Saccharum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:4515102654	193	AT1G47271 "AT1G47271" [Arabido	0.846	0.911	0.638	8.1e-60
TAIR|locus:2183740	206	CBSX3 "AT5G10860" [Arabidopsis	0.975	0.985	0.528	9.2e-52
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.586	0.835	0.429	1.6e-22
UNIPROTKB|Q0BYV1	144	HNE_2660 "CBS domain protein"	0.649	0.937	0.323	1.4e-16
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.673	0.972	0.324	1.2e-12
TIGR_CMR|SPO_2201	144	SPO_2201 "CBS domain protein"	0.673	0.972	0.324	1.2e-12
UNIPROTKB|Q5LSF9	607	SPO1809 "Nucleotidyltransferas	0.490	0.168	0.380	3e-12
TIGR_CMR|SPO_1809	607	SPO_1809 "nucleotidyltransfera	0.490	0.168	0.380	3e-12
UNIPROTKB|Q60B97	150	MCA0583 "CBS domain protein" [	0.562	0.78	0.333	8.2e-12
UNIPROTKB|O06186	143	hrp1 "Hypoxic response protein	0.591	0.860	0.271	5.2e-10

TAIR|locus:4515102654 AT1G47271 "AT1G47271" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 115/180 (63%), Positives = 150/180 (83%)

Query:    29 VEGRKTCSRFGCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVK 88
             +  RK  + FGC+   +S P  EKGLEN++VA+VL TK  D + +W+ CR++DTV DAVK
Sbjct:    18 IHQRKVSAGFGCL---TSPPPPEKGLENLTVADVLSTKDTD-IDTWISCRTNDTVSDAVK 73

Query:    89 NMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLP 148
             NMA+HNIGSLVVL+PG+QQ+IAGI TERDY++KI+G GRS K T+V E+MTDE+KL+T+ 
Sbjct:    74 NMAKHNIGSLVVLEPGDQQYIAGIVTERDYMKKIIGAGRSSKLTKVGEVMTDESKLVTVS 133

Query:   149 SDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY 208
             S  NI+ AMQLM++ HIRHVPVIDG+IVG+IS+VDVV+A+V+ Q GELKRLNEFI+G+YY
Sbjct:   134 SGTNIIKAMQLMSENHIRHVPVIDGKIVGLISMVDVVKAIVDHQNGELKRLNEFIKGDYY 193

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2183740 CBSX3 "AT5G10860" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 111/210 (52%), Positives = 151/210 (71%)

Query:     1 MQGMIKGVRTCQEILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSSPT--EEKGLENIS 58
             MQG+I+   +   ++KG++L+H +   V+      S F C  S S+ P   EE G E+ +
Sbjct:     1 MQGVIRSFVSGGNVVKGSVLQHLR---VINPAIQPSVF-CSRSESTQPARMEESGFESTT 56

Query:    59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
             +++V+ +KG    GSWL C +DDTV DAVK+M QHN+G+LVV+KPGEQQ +AGI TERDY
Sbjct:    57 ISDVMKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDY 116

Query:   119 LRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVG 177
             LRKI+ QGRS K T+V +IMT+ENKLIT+  +  +L AMQLMTD  IRH+PVI D  ++G
Sbjct:   117 LRKIIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIG 176

Query:   178 MISIVDVVRAVVEQQKGELKRLNEFIRGEY 207
             M+SI DVVRAVV + + EL+RLN +I+G Y
Sbjct:   177 MVSIGDVVRAVVHEHREELQRLNAYIQGGY 206

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 55/128 (42%), Positives = 88/128 (68%)

Query:    80 DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
             D  V DA++ MA+ NIG+L V+   E   + G+ +ERDY RK++ +GRS   T V EIM+
Sbjct:    24 DQMVLDALRLMAEKNIGALPVV---EGNVVVGVVSERDYARKVILKGRSSVGTPVREIMS 80

Query:   140 DENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRAVVEQQKGELKR 198
               NK+IT+ S  ++   M +MTD H+RH+PV+ DGR++G++SI D+V+  + +Q   +++
Sbjct:    81 --NKVITVDSQQSVEACMGIMTDSHLRHLPVVEDGRLLGLLSIGDLVKEAIAEQASLIQQ 138

Query:   199 LNEFIRGE 206
             L ++IRGE
Sbjct:   139 LEQYIRGE 146

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BYV1 HNE_2660 "CBS domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 46/142 (32%), Positives = 82/142 (57%)

Query:    68 DDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKP-GEQQHIAGIFTERDYLRKIVGQG 126
             +DK    +  R+DDT+ +A + + +  IG++V L   GE   I G+ +ERD +R+   QG
Sbjct:     8 NDKGREVITLRADDTLREAARLLDERRIGAVVTLDADGE---IVGVLSERDIVRQFARQG 64

Query:   127 RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVV 185
                    V   MT    +IT+ +DA +  A+QLMTD+ IRH+PV+ + R+ G +SI D+V
Sbjct:    65 EGALDMPVGNAMT--RAVITISADAEVDEALQLMTDRRIRHLPVVRNSRLTGFVSIGDLV 122

Query:   186 RAVVEQQKGELKRLNEFIRGEY 207
             +  + + + E + +  ++  ++
Sbjct:   123 KWKIAETQAEAEAMKSYLSSQF 144

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/148 (32%), Positives = 76/148 (51%)

Query:    59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
             V  +L +K  D V   +   +  TV  A   +A+  IG++VV   GE     GI +ERD 
Sbjct:     3 VQAILKSKASDGV---VTVSAAATVAQAAAILAEKRIGTVVVSDDGETAQ--GILSERDI 57

Query:   119 LRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVG 177
             +R++   G       V+  MT +  LIT   DA +   +  MT+   RH+PVI+ G++VG
Sbjct:    58 VRELAASGSGCLSEPVSTYMTKD--LITCGRDAKVQDVLSQMTEGRFRHMPVIEEGKLVG 115

Query:   178 MISIVDVVRAVVEQQKGELKRLNEFIRG 205
             ++++ DVV+A + +   E   L   I G
Sbjct:   116 LVTLGDVVKAQLAELAMEKDALEGMIMG 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2201 SPO_2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/148 (32%), Positives = 76/148 (51%)

Query:    59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
             V  +L +K  D V   +   +  TV  A   +A+  IG++VV   GE     GI +ERD 
Sbjct:     3 VQAILKSKASDGV---VTVSAAATVAQAAAILAEKRIGTVVVSDDGETAQ--GILSERDI 57

Query:   119 LRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVG 177
             +R++   G       V+  MT +  LIT   DA +   +  MT+   RH+PVI+ G++VG
Sbjct:    58 VRELAASGSGCLSEPVSTYMTKD--LITCGRDAKVQDVLSQMTEGRFRHMPVIEEGKLVG 115

Query:   178 MISIVDVVRAVVEQQKGELKRLNEFIRG 205
             ++++ DVV+A + +   E   L   I G
Sbjct:   116 LVTLGDVVKAQLAELAMEKDALEGMIMG 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LSF9 SPO1809 "Nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 174 (66.3 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 43/113 (38%), Positives = 66/113 (58%)

Query:    77 CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
             C  D TV+ A + M   +I SL V + G    + GI T+RD   K+V + RSP  T V +
Sbjct:   155 CAPDTTVQAAAQEMRARSISSLCVCEDGA---LVGILTQRDLSGKVVAEARSPD-TPVDQ 210

Query:   137 IMTDENKLITLPS--DANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVR 186
             +MT    L   PS   +++LHAM    ++HI H+P+++ GR+VGM++  D+ R
Sbjct:   211 VMTPA-PLTLAPSAIGSDVLHAMM---ERHIGHIPIVEAGRLVGMVTQTDLTR 259

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1809 SPO_1809 "nucleotidyltransferase/CBS/cyclic nucleotide-binding domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 174 (66.3 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 43/113 (38%), Positives = 66/113 (58%)

Query:    77 CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
             C  D TV+ A + M   +I SL V + G    + GI T+RD   K+V + RSP  T V +
Sbjct:   155 CAPDTTVQAAAQEMRARSISSLCVCEDGA---LVGILTQRDLSGKVVAEARSPD-TPVDQ 210

Query:   137 IMTDENKLITLPS--DANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVR 186
             +MT    L   PS   +++LHAM    ++HI H+P+++ GR+VGM++  D+ R
Sbjct:   211 VMTPA-PLTLAPSAIGSDVLHAMM---ERHIGHIPIVEAGRLVGMVTQTDLTR 259

GO:0008150 "biological_process" evidence=ND

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0030551 "cyclic nucleotide binding" evidence=ISS

UNIPROTKB|Q60B97 MCA0583 "CBS domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 41/123 (33%), Positives = 69/123 (56%)

Query:    80 DDTVEDAVKNMAQHNIGSLVVLKPGEQQ-HIAGIFTERDYLRKIVGQGRSPKYTRVAEIM 138
             DDT+ +A K M  H++GS+VV++  E      GI T+RD + +I+ +  +P    V ++M
Sbjct:    17 DDTIVEAAKVMRAHHVGSVVVVEEAEGGCKPLGILTDRDLVVEILAEEVAPDAVTVGDVM 76

Query:   139 TDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQKGEL 196
             + E  L+T      +   +Q M    +R +PV+D  G +VG+IS  D +  ++  + GEL
Sbjct:    77 SFE--LVTAQEQDGLWETLQRMRAHGVRRIPVVDERGLLVGIISADDYLE-ILAGELGEL 133

Query:   197 KRL 199
              RL
Sbjct:   134 ARL 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O06186 hrp1 "Hypoxic response protein 1" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 35/129 (27%), Positives = 69/129 (53%)

Query:    64 MTKGDDKVGSWLCCRSD-DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122
             MT   D + + + C  + +T+  A + M +H+IG+L +   G+   + G+ T+RD + K 
Sbjct:     1 MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKG 58

Query:   123 VGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISI 181
             +  G  P      E+  D   +  + ++A+I   + +M +  +R VPVI + R+VG+++ 
Sbjct:    59 LAAGLDPNTATAGELARDS--IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTE 116

Query:   182 VDVVRAVVE 190
              D+ R + E
Sbjct:   117 ADIARHLPE 125

GO:0001666 "response to hypoxia" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0052553 "modulation by symbiont of host immune response" evidence=IDA

GO:0052572 "response to host immune response" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-41
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	5e-31
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	2e-25
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-23
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	6e-23
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	1e-21
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	1e-21
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	2e-21
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	4e-21
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	2e-18
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-17
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	3e-16
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-14
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-13
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	2e-13
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	6e-13
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	9e-13
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	2e-12
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	7e-12
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	1e-11
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	1e-11
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	1e-11
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-11
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-11
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-11
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	4e-11
pfam00571	57	pfam00571, CBS, CBS domain	7e-11
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	8e-11
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	1e-10
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	1e-10
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	4e-10
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	7e-10
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	1e-09
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	2e-09
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-09
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	9e-09
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-08
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	2e-08
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	2e-08
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	4e-08
PRK10892	326	PRK10892, PRK10892, D-arabinose 5-phosphate isomer	4e-08
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	1e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-07
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	4e-07
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	5e-07
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-06
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	1e-06
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	1e-06
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	2e-06
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	2e-06
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	2e-06
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	3e-06
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	3e-06
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	3e-06
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	5e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	5e-06
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	6e-06
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	7e-06
pfam00571	57	pfam00571, CBS, CBS domain	9e-06
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	9e-06
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	1e-05
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-05
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	1e-05
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	2e-05
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	3e-05
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	4e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	5e-05
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	5e-05
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	5e-05
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	6e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	7e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	1e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	1e-04
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	1e-04
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	1e-04
cd04619	114	cd04619, CBS_pair_6, The CBS domain, named after h	1e-04
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	1e-04
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	1e-04
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	2e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	2e-04
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	3e-04
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	5e-04
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	6e-04
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	8e-04
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	8e-04
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	9e-04
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	0.001
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.001
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	0.001
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	0.002
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.002
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.002
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	0.002
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	0.002
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	0.002
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	0.002
cd04582	106	cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contain	0.003

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  136 bits (345), Expect = 1e-41
 Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 5/112 (4%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
            R D TV +A K MA+ NIG++VV+  G    + GIF+ERD +RK+  +G S   T V+E
Sbjct: 6   VRPDATVAEAAKLMAEKNIGAVVVVDDGG--RLVGIFSERDIVRKVALRGASALDTPVSE 63

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRA 187
           IMT    +IT+  D  +  AM LMT++  RH+PV+D G++VG++SI DVV+A
Sbjct: 64  IMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  109 bits (274), Expect = 5e-31
 Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 7/114 (6%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           + C  D T+ +A + M +H + SL+V+   +   + GI T+RD   ++V +G  P  T V
Sbjct: 4   VTCSPDTTIREAARLMTEHRVSSLLVV---DDGRLVGIVTDRDLRNRVVAEGLDPD-TPV 59

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRA 187
           +E+MT     IT+P DA +  A+ LM ++ I H+PV+D GR+VG+IS  D++R 
Sbjct: 60  SEVMTAP--PITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 94.9 bits (237), Expect = 2e-25
 Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 7/114 (6%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
               DDT+ +A + M +H++G+L V    E   + GI T+RD + + V +GR P  T V 
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPV---CENDRLVGIVTDRDIVVRAVAEGRDPDTTTVG 61

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           ++MT    ++T+  D ++  A +LM +  +R +PV+D  GR+VG++S+ D+ RA
Sbjct: 62  DVMTRG--VVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 89.0 bits (221), Expect = 4e-23
 Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 7/115 (6%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +    DDTV +A++ M +H I  L V+   +   + GI TERD LR +  +G       V
Sbjct: 4   VTVSPDDTVAEALRLMLEHGISGLPVVD--DDGRLVGIVTERDLLRALA-EGGLDPLVTV 60

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
            ++MT +  ++T+  D ++  A +LM +  IR +PV+D  GR+VG+++  D++RA
Sbjct: 61  GDVMTRD--VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 88.4 bits (220), Expect = 6e-23
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 7/113 (6%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
                TV++A K M +  +  ++V    +   + GIFT +D   ++V QG  P+ T V  
Sbjct: 6   VSPTTTVQEAAKLMREKRVSCVLV---MDGNKLVGIFTSKDIALRVVAQGLDPESTLVER 62

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           +MT      T  SD  +L A+ LM     RH+PV+D  G++VG++ +  +  A
Sbjct: 63  VMTPNPVCAT--SDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 85.3 bits (212), Expect = 1e-21
 Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           L C  D ++ +A   M +  I S+VV+  G      GI TERD LR +         T V
Sbjct: 4   LTCPPDTSLAEAASRMRERRISSIVVVDDGRPL---GIVTERDILRLLASGPDLQ--TPV 58

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
            E+M+  + L+T+P+D ++  A QLM +  IRH+ V+D  G ++G++S  D+++ 
Sbjct: 59  GEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQN 111

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.0 bits (211), Expect = 1e-21
 Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 8/115 (6%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +    D ++ +A K MA+ N+GS+VV+ P E+    GI TERD +R  V  G     T V
Sbjct: 4   VTVDPDTSIREAAKLMAEENVGSVVVVDPDER--PIGIVTERDIVRA-VAAGIDLD-TPV 59

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           +EIMT    L+T+  D  +  A +LM   +IRH  V+D  G +VG+ISI D+VR 
Sbjct: 60  SEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 84.2 bits (209), Expect = 2e-21
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 4/107 (3%)

Query: 82  TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
           TV +A++ M +H + SLVV K  E     GI T RD L+K+V +GR P    V EIMT  
Sbjct: 11  TVAEALQLMKEHGVSSLVVEKRRESDAY-GIVTMRDILKKVVAEGRDPDRVNVYEIMT-- 67

Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRA 187
             LI++  D +I +  +LM   +IR  PV+ +  ++G+IS+ D+  A
Sbjct: 68  KPLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 84.0 bits (208), Expect = 4e-21
 Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 6/109 (5%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           +  + +AV  MA+ ++GSLVV++ GE   + G+ T R+ L+ +   G     T V  IM 
Sbjct: 9   ETLLSEAVATMAEQDLGSLVVMERGE---LVGLLTFREVLQAMAQHGAGVLDTTVRAIMN 65

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-RIVGMISIVDVVRA 187
            E  ++  P D+ I    +LM ++H+R++PV+DG  ++G+IS  DV +A
Sbjct: 66  PE-PIVASPDDS-IDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAKA 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           D TV +A   M ++NIG L+V+   +     GI TERD ++K+V +   P+   V E+M+
Sbjct: 9   DTTVYEAANIMTENNIGRLIVVDNEK---PVGIITERDLVKKVVSRNLKPREVPVGEVMS 65

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRA 187
               LIT+  +A++  A +LM    I+ +PV+ D  +VG+++  D+V  
Sbjct: 66  --TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVMG 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 74.0 bits (182), Expect = 2e-17
 Identities = 35/114 (30%), Positives = 67/114 (58%), Gaps = 11/114 (9%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
             + D +V DA+  M+++ + ++ V+   +   + GI TERD LR +   G+      V 
Sbjct: 11  TVKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRALAAGGKRL--LPVK 65

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKH-IRHVPVID---GRIVGMISIVDVV 185
           E+MT    ++T+  D  +  A++LM ++H IR +PV+D   G++VG+I++ D++
Sbjct: 66  EVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 76.3 bits (188), Expect = 3e-16
 Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 7/132 (5%)

Query: 58  SVAEVLMTK-GDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTER 116
             +E ++T+ G+ K    +      +++DA + M    + SLVVL         GI T +
Sbjct: 142 GESEFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPL--LGIVTRK 199

Query: 117 DYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRI 175
           D   +++  GR  K  +V+E+MT    +I++     +  AM +M    I+H+PV  DG+ 
Sbjct: 200 DLRSRVIADGR-SKTQKVSEVMTSP--VISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQP 256

Query: 176 VGMISIVDVVRA 187
           +G++++ D++R 
Sbjct: 257 LGILTLTDILRL 268

Length = 610

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 28/133 (21%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR---- 133
             + +V +A + M  ++I  L V+       + GI +E D LR+    G   +  R    
Sbjct: 8   SPETSVAEAARLMLDNHISGLPVVDDD--GRLVGIVSEGDLLRRAE-LGTERRRARWLDL 64

Query: 134 ------------------VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGR 174
                             VA++MT    ++T+  D  +    +LM +  I+ VPV+  GR
Sbjct: 65  LAGAEELAAAFVRSHGRKVADVMTRP--VVTVGEDTPLAEVAELMEEHRIKRVPVVRGGR 122

Query: 175 IVGMISIVDVVRA 187
           +VG++S  D++RA
Sbjct: 123 LVGIVSRADLLRA 135

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 15/118 (12%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV---------GQGRSPK 130
           DD V  A + M  H+I  L V++ G+   + GI TE+D    +           Q R  +
Sbjct: 9   DDRVSHARRLMLDHDISRLPVIEGGK---LVGIVTEKDIADALRSFRPLVRDRHQERRIR 65

Query: 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRA 187
              V++IMT    +IT+  D ++     LM + +I  +PV+D G++VG+++  D++R 
Sbjct: 66  NLPVSDIMTRP--VITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILRY 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 15/122 (12%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR--------- 127
              D ++E+A   + +H I +L V+     + + GI T+RD LR     GR         
Sbjct: 7   VTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRG 64

Query: 128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVV 185
             K   V +IM+    ++T+  D  I   + L+ D    HVPV+D   R+VG+++  D++
Sbjct: 65  RDKPETVGDIMSPP--VVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122

Query: 186 RA 187
            A
Sbjct: 123 AA 124

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 62.2 bits (152), Expect = 6e-13
 Identities = 32/112 (28%), Positives = 63/112 (56%), Gaps = 11/112 (9%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV-GQGRSPKYTRVAE 136
           R + T+E+A + + ++   +L V++ G    + GI + RD  + +  G G +P    V +
Sbjct: 8   RPEATIEEARELLLRYGHTALPVVEGGR---VVGIISRRDVEKALRHGLGHAP----VKD 60

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRA 187
            M+ +  ++T+P D  +    +LM +  I  VPV+ DGR+VG+++  D++R 
Sbjct: 61  YMSTD--VVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 61.7 bits (151), Expect = 9e-13
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 7/113 (6%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              D +++DA+  M++  +G   V+   E   + GIFT+ D LR+ + +G       VA+
Sbjct: 7   VSPDTSLKDALLEMSRKGLGMTAVVD--EDGRLVGIFTDGD-LRRALEKGLDILTLPVAD 63

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           +MT      T+  DA    A++LM +  I  +PV+D  GR VG++ I D++RA
Sbjct: 64  VMT--RNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLRA 114

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           D  V DA+  M+Q    S V++   E+  + GIFTERD +R     G+      + E+MT
Sbjct: 9   DTPVADAIALMSQQGDSSCVLVV--EKGRLLGIFTERDIVRLT-AIGKDLSDLPIGEVMT 65

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMIS 180
                +      +I  A+ L     IRH+PV+D  G+++G+++
Sbjct: 66  QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVT 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 79  SDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIM 138
            D TV++ +  M         V+  G    + GI T    +R++  +GR      V ++M
Sbjct: 8   VDLTVDEVLALMFGERHRGYPVVDDG---RLVGIVT-LADIRRVPAEGR-EATVLVGDVM 62

Query: 139 TDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           T     +T   D  +  A++ M ++ I  +PV+D  GR+VG++S  D++RA
Sbjct: 63  TR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 59.0 bits (144), Expect = 1e-11
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 11/115 (9%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +    D TV +A++ MA++ I  L V+    +  + GI T RD LR      +      V
Sbjct: 5   ITVSPDATVAEALELMAEYGISGLPVVDDDGK--LVGIVTNRD-LRFETDLDKP-----V 56

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           +E+MT EN L T     ++  A++L+ +  I  +PV+D  G++ G+I++ D+ + 
Sbjct: 57  SEVMTPENLLTT-VEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEKR 110

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
             ++ DA + M +H   +L+V + G+ +   GI T  D L  ++  G     T V EI T
Sbjct: 9   STSIRDAARLMREHGADALLV-RDGDPRL--GIVTRTDLLDAVLLDGLPSS-TPVGEIAT 64

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-RIVGMISIVDV 184
               LIT+  D  + +A+ LMT   I  V V +G  +VG++   D+
Sbjct: 65  --FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 10/121 (8%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI----VGQGRSPKYTR 133
            +D +++ A K + +H I +L VL    +  + GI T+RD L+        + R  +   
Sbjct: 259 STDTSIDHARKLLQEHRIKALPVLDEHRR--LVGIVTQRDLLKHARPSPFQRLRFLRPPT 316

Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQ 191
           V  IMT    ++T+  D   +  +  + D+ +  +PV+D  G++VG++S  D++ A+   
Sbjct: 317 VKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374

Query: 192 Q 192
            
Sbjct: 375 W 375

Length = 382

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 18/120 (15%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKY-------- 131
           D ++ +A+K M +++I  L V+  G+   + GI T+RD L+       +           
Sbjct: 9   DTSLMEALKLMKENSIRRLPVVDRGK---LVGIVTDRD-LKLASPSKATTLDIWELYYLL 64

Query: 132 --TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
              +V++IMT     IT+  DA++  A +LM ++ I  +PV+D  GR+VG+I+  D+ RA
Sbjct: 65  SKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 11/114 (9%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              D T+ +A+  MA++ I  + V+   E   + GI T RD +R      +      V+E
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVD--ENGKLVGIITNRD-VRFETDLSQ-----PVSE 151

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           +MT E  L+T+P    +  A++L+ +  I  +PV+D  GR+ G+I++ D+ +A 
Sbjct: 152 VMTKER-LVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204

Length = 486

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK--------IVGQGRSP 129
             DD++ DA + M +H I  L V+    +  + G+ T+RD LR                 
Sbjct: 7   SEDDSLADAEELMREHRIRHLPVVNEDGK--LVGLLTQRDLLRAALSSLSDNGEESLTKE 64

Query: 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           +   VAE+M     ++T+  D  +  A ++M +  I  +PV+D  G +VG+I+  D +R 
Sbjct: 65  RDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 13/108 (12%)

Query: 81  DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTD 140
           D+V  A + M +H IG L V+   E   + GI T RD +R      R+     VA+ MT 
Sbjct: 10  DSVGRAARLMEKHRIGGLPVV---EDGKLVGIITSRD-VR------RAHPNRLVADAMTR 59

Query: 141 ENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRA 187
           E  ++T+  +A++L A +LM +K I  +PV+ + ++VG+I+   +   
Sbjct: 60  E--VVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIALE 105

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 55.2 bits (134), Expect = 7e-11
 Identities = 21/59 (35%), Positives = 42/59 (71%), Gaps = 4/59 (6%)

Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
           V +IMT    ++T+P D ++  A++LM +  I  +PV+D  G++VG++++ D++RA++E
Sbjct: 1   VKDIMTP--DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.0 bits (138), Expect = 8e-11
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 16/119 (13%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI---VGQ-GRSPK----- 130
           DD +E+  +   +H    L+V++  E   + G+ ++RDYL+ I   +G  G + K     
Sbjct: 9   DDRLEEVREIFEKHKFHHLLVVEDNE---LVGVISDRDYLKAISPFLGTAGETEKDLATL 65

Query: 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
             R  +IMT     IT+  D  +  A +L+ +  I  +PV+D  G+++G+I+  D+++ 
Sbjct: 66  NRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 16/117 (13%)

Query: 78  RSDDTVEDAVKNMAQHNI-GSLVVLKPGEQQHIAGIFTERDYLRKIVG-----QGRSPKY 131
             D +V +AV+ + +  I G  VV    +  ++ G  +E+D L++++       G +   
Sbjct: 7   TPDMSVTEAVEKLLKSKISGGPVV---DDNGNLVGFLSEQDCLKQLLESSYHCDGVAT-- 61

Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRA 187
             V +IMT E  ++T+  D +I+   QLM     +  PV+D G++VG IS  DV+RA
Sbjct: 62  --VRDIMTTE--VLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLRA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 37/143 (25%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR-------SP 129
           C +DDT+ DA + + ++ I    VL  G+   + GI +E D L+ +V           SP
Sbjct: 6   CNADDTISDAARLLRENKISGAPVLDGGK---LVGIVSESDILKLLVTHDPSGNLWLPSP 62

Query: 130 ------------------------KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHI 165
                                      +V +IMT   K+IT+  DA+I  A +LM    I
Sbjct: 63  LELIELPLREFINWEETKRALTDAGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKI 120

Query: 166 RHVPVID-GRIVGMISIVDVVRA 187
           + +PV++ GR+VG+++  D++  
Sbjct: 121 KRLPVVEDGRLVGIVTRGDIIEG 143

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 32/107 (29%), Positives = 63/107 (58%), Gaps = 12/107 (11%)

Query: 82  TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
           T +D ++ + ++ +  + V+K   +  + GI T +D LR        P+  ++A +MT +
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGE--LVGIITRKDLLRN-------PEEEQLALLMTRD 61

Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRA 187
               T+  D ++  A +LM + +IR VPV+ DG++VG++++ D+VRA
Sbjct: 62  --PPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 13/117 (11%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR--------KIVGQGRSPKY 131
             T+ +A++ M +H I  L V+   E+  + GI T+RD               +      
Sbjct: 9   TTTIAEALELMREHKIRHLPVVD--EEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLK 66

Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRA 187
             V EIMT +  +IT+     +  A  LM +  I  +PV+ DGR+VG+I+  D++R 
Sbjct: 67  MPVKEIMTKD--VITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLRT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
            ++T+     I  A++LM +  IRH+PV+D  GR+VG+++  D+  A
Sbjct: 2   DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDA 48

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 27/129 (20%)

Query: 82  TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERD-----------------YLRKIVG 124
           ++   V  M ++ +G ++V+    +    G+ T RD                    K   
Sbjct: 11  SLLHVVDEMEKNGVGRVIVVDDNGK--PVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA 68

Query: 125 QGRSPKYTR-----VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-RIVGM 178
             +  +Y +       +IMT+E   IT+  + +++ A +LM + +I  +PV+D   IVG+
Sbjct: 69  GQKRYRYVKEVPLVAEDIMTEEI--ITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGV 126

Query: 179 ISIVDVVRA 187
           I+  D+ R 
Sbjct: 127 ITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQKGELKRLN 200
            ++T+  D  +  A++LM +  I  +PV+D  GR+VG+++  D++RA+ E     L  + 
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVG 61

Query: 201 EFIR 204
           + + 
Sbjct: 62  DVMT 65

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 15/121 (12%)

Query: 79  SDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK-------- 130
               + +A K M ++    L V+  G    + GI T  D L+ + G  +  K        
Sbjct: 8   PTTPIMEAAKIMVRNGFRRLPVVDEGTG-KLVGIITATDILKYLGGGEKFNKIKTGNGLE 66

Query: 131 --YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVR 186
                V  IMT    +IT+  D +I  A +LM +K +  +PV+D  G++VG+++  D+++
Sbjct: 67  AINEPVRSIMTRN--VITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124

Query: 187 A 187
           A
Sbjct: 125 A 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQQ 192
           V +IMT +  +IT+  D ++  A+ LM++  +  VPV+D G++VG+I+  D++RA+    
Sbjct: 1   VKDIMTKD--VITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGG 58

Query: 193 KGELK 197
           K  L 
Sbjct: 59  KRLLP 63

Length = 117

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              DDTV  A++ M ++ +  L V+  G    + G   E D L   + +G++     V E
Sbjct: 6   VAPDDTVSQAIERMREYGVSQLPVVDDGR---VVGSIDESD-LLDALIEGKAKFSLPVRE 61

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRA 187
           +M +   L T+  DA I    +L+   ++  V    G+ VG+I+  D+++ 
Sbjct: 62  VMGE--PLPTVDPDAPIEELSELLDRGNVAVVVDEGGKFVGIITRADLLKY 110

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 26/132 (19%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT---- 132
            + DDT+ D V+ +    I  + V+    +  + GI +E D +RKI  +G+   Y     
Sbjct: 6   VKKDDTLRDVVEILLTGKISGVPVVD--NEGRVVGIVSEGDLIRKI-YKGKGLFYVTLLY 62

Query: 133 ----------------RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRI 175
                           +V EIMT   K+IT+  D  I    ++M+ K+I+ +PV+D G++
Sbjct: 63  SVIFLDESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKL 120

Query: 176 VGMISIVDVVRA 187
           VG+IS  D++R+
Sbjct: 121 VGIISRGDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 10/111 (9%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIM 138
           + TV D ++ M +  I  + V++ G+    + GI T+RD       +    K   V+E+M
Sbjct: 96  ETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI------RFVKDKGKPVSEVM 149

Query: 139 TDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           T E  +IT+P   ++  A++++ +  I  +PV+D  G +VG+I++ D+V+ 
Sbjct: 150 TREE-VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKR 199

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 14/130 (10%)

Query: 63  LMTKGDD--KVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           +M  GD+   V          ++ DA+  + + N+G  V+    +   I GIFT+ D LR
Sbjct: 207 IMHTGDEIPHVSK------TASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGD-LR 257

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-RIVGMI 179
           ++   G   +   +A++MT     I +      + A+ LM  +HI  V V DG  ++G++
Sbjct: 258 RVFDMGIDLRQASIADVMTPGG--IRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVL 315

Query: 180 SIVDVVRAVV 189
            + D++RA V
Sbjct: 316 HMHDLLRAGV 325

Length = 326

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137
           R + +V DA+  +   ++GSL V+   E   + G+ + +D L+  +G     K   V  I
Sbjct: 7   RENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGGADLQK-VPVGVI 63

Query: 138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-----RIVGMIS 180
           MT    + T   + ++L A + + +  +  +PV++       ++G I+
Sbjct: 64  MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRIT 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 41  VISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVV 100
              ++ S  E   L  + V E+ MTK    V   +     DTVE+A   M +H IG L V
Sbjct: 51  SPFTTLSEHELYLLLKMPVKEI-MTK---DV---ITVHPLDTVEEAALLMREHRIGCLPV 103

Query: 101 LKPGEQQHIAGIFTERDYLR 120
           ++ G    + GI TE D LR
Sbjct: 104 VEDGR---LVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 18/126 (14%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERD------------YLRKI 122
           +   SD+ V DA K M ++NI  L V+   E+  + G  +  D              R I
Sbjct: 4   VSIDSDERVLDAFKLMRKNNISGLPVVD--EKGKLIGNISASDLKGLLLSPDDLLLYRTI 61

Query: 123 VGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMIS 180
             +  S K+T           LIT    + +   +  +    +  V V+D  G+ +G+I+
Sbjct: 62  TFKELSEKFT--DSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVIT 119

Query: 181 IVDVVR 186
           + D++ 
Sbjct: 120 LTDIIS 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           + T+ +A +    H+I    V+  G+   + GI T  D    I    R  +  +V ++MT
Sbjct: 9   NATLREAARLFNTHHIHGAPVVDDGK---LVGIVTLSDIAHAI---ARGLELAKVKDVMT 62

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
            +  +IT+  D  +  A++LM   ++  + V D  GR VG+I+  D++R+
Sbjct: 63  KD--VITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQ 191
            +IT+  DA +  A +LM +K+I  V V+D  GR+VG+ S  D+VR V  +
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALR 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 13/110 (11%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           DDTV DA+  + +   G++VV+   E+    G+ TE D      G  R   +T+V ++M+
Sbjct: 105 DDTVGDALALLPKRAHGAVVVV--DEEGRPVGVVTEAD----CAGVDR---FTQVRDVMS 155

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
            +  L+TLP+  +   A  L+    ++  PV+D  GR+VG+++    +RA
Sbjct: 156 TD--LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRA 203

Length = 479

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 19/104 (18%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           D  + + +  +A     +  V+   +   + GI +  D +R+I+           ++IMT
Sbjct: 9   DTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDD-IREILFDPSLYDLVVASDIMT 65

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMIS 180
                + +  + ++  A++   D     +PV+D   G+++G++S
Sbjct: 66  --KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILS 107

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 82  TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
           + +DA+  M++  +GS +V    E   + G+FT+ D  R ++G G     + V + MT  
Sbjct: 174 SFKDALLEMSEKRLGSAIVCD--ENNQLVGVFTDGDLRRALLGGG--SLKSEVRDFMTLG 229

Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMI 179
            K  T   DA +L A++ +  + I  + V+D   +++G++
Sbjct: 230 PK--TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
             +V DA+  +++  +G + V     QQ + G+FT+ D  R +VG G     T V E MT
Sbjct: 215 TASVMDAMLELSRTGLGLVAVCD--AQQQVQGVFTDGDLRRWLVGGGALT--TPVNEAMT 270

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
                 TL + +  + A +++  + I   PV+D  G++ G I++ D  +A
Sbjct: 271 RGG--TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318

Length = 321

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 18/115 (15%)

Query: 78  RSDDTVEDAVKNMAQH-----NIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132
           R D TV +A++ + ++      I  + V+   E+  + G+ +    LR ++    +   T
Sbjct: 3   REDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVS----LRDLL---LADPDT 53

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVV 185
            V++IM  +  +I++ +D +     +L     +  +PV+D  GR+VG+I++ DV+
Sbjct: 54  PVSDIMDTD--VISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
             +V ++  D  K +T+  D ++  A  LM + +++ +PV+D  G+++G++S+ D+ RA 
Sbjct: 67  KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAY 124

Query: 189 VE 190
           ++
Sbjct: 125 MD 126

Length = 546

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 79  SDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIM 138
            D ++ +A+  M ++N   ++V    E   + G+ T  D L   + +    K  +V  I+
Sbjct: 8   EDASIREALHEMLKYNTNEIIVKDNEE--KLKGVVTFTDILDLDLFESFLEK--KVFNIV 63

Query: 139 TDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVV 185
                +  +  +  I  A+ +M +K I  +PV+D  +++G++   D++
Sbjct: 64  --SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 12/106 (11%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              D T+ +A+K M    + SL+V+   +   + GI +    L +   + +S     + +
Sbjct: 7   ITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLES-LEQAYKEAKS-----LED 58

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMIS 180
           IM     + T+  DA++   + L+  +  ++VPV+D  G++VG+I+
Sbjct: 59  IM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVR 186
            ++T+  + ++  A +LM D HI  +PV+D  GR+VG++S  D++R
Sbjct: 3   DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLR 48

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 17/47 (36%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 144 LITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           ++TL  D ++  A +LM +  IRH+PV++  G++VG+++  D++RA 
Sbjct: 3   VVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAA 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 41.7 bits (99), Expect = 6e-06
 Identities = 15/47 (31%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 144 LITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           ++T+  D  +  A++L+ +  IR +PV+D  GR+VG+++  D+++A+
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 7/113 (6%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
           C   +  +  AV  M  +  GS  +    +++ + GI T  D L   +         +V 
Sbjct: 5   CVVLNTDIARAVAEM--YTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKD-AKVR 61

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVR 186
           E+M   + +IT+ ++ +I  A  LM++ +I  +PV+D  G++ G+++  D++R
Sbjct: 62  EVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.4 bits (98), Expect = 9e-06
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG 124
           +    D ++E+A++ M ++ I  L V+   E   + GI T RD LR ++ 
Sbjct: 10  VTVPPDTSLEEALELMRENGISRLPVV--DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 12/111 (10%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR--SPKYT 132
           L    D ++ DA++ + ++ +  ++V+   E   + G  T+ D  R ++       P   
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVD--ENGRLLGTVTDGDIRRALLKGLSLDDP--- 59

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISI 181
            V+E+M      IT    ++    + LM ++ IRH+P++D  GR+VG+ ++
Sbjct: 60  -VSEVMNRNP--ITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATL 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDV 184
           +K++++ SD  +L A +LM   +I  +PV+D  G+++G IS  D+
Sbjct: 1   SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDL 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 11/111 (9%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137
             D ++++A K M + NI  L V+   E   + GI T  D + K V + +      V +I
Sbjct: 8   SEDASIKEAAKLMIEENINHLPVVD--EDGRLVGIVTSWD-ISKAVARDKK----SVEDI 60

Query: 138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--RIVGMISIVDVVR 186
           MT    +IT   D  I  A + M   +I  +PV+D   R++G+I+  D+ +
Sbjct: 61  MT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 78  RSDDTVEDAVKNMAQHNI-GSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
           R DDT+ +A K   +  I G+ VV    +   I GI T  D  + I          +V++
Sbjct: 186 RPDDTLREAAKLFYEKGIRGAPVV----DDDKIVGIITLSDIAKAI---ANGNLDAKVSD 238

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
            M     +IT+  D +I  A++LM   ++  + V D  G+ VG+I+  D++  +
Sbjct: 239 YMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290

Length = 294

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137
            +   + +A + + +   GS +V+       + GI T  D LR +         + V E+
Sbjct: 7   SATTPLREAAEQLIESKHGSALVVDR--DGGVVGIITLPDLLRALEADEAGEP-SAVDEV 63

Query: 138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVID----GRIVGMISIVDVVRA 187
            T    L+T+  D  + HA+  M  + +R +PV+D    G+++G+++  +V+ A
Sbjct: 64  ATPP--LLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSL-VVLKPGEQQHIAGIFTERDYLR--------KIVGQGR 127
           C  DD V      M +     L VV K GE     GI T RD +R        +   + +
Sbjct: 6   CTPDDPVSKVWDLMLESGFTGLPVVQKAGELI---GIITRRDIIRAGSVRTSVEDQQRTQ 62

Query: 128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVV 185
           +     V +IM+    + ++  D +I  A++LM +  I  +PV++   ++VG++   DV+
Sbjct: 63  TKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

Query: 186 RA 187
           +A
Sbjct: 121 KA 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              DD++ D V  M    I  L V++  +   + G  TE D +R ++    S +  RV E
Sbjct: 78  VSPDDSISDVVNLMRDKGISQLPVIEEDK---VVGSITENDIVRALLEGMESIRSLRVRE 134

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRAVVE 190
           +M +    ++     N++   QL+  +    V V+ +G++VG+I+  D+++ +  
Sbjct: 135 VMGEPFPTVSPDESLNVIS--QLL--EEHPAVLVVENGKVVGIITKADIMKLLAG 185

Length = 187

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 144 LITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVE 190
           ++++  D  +  A++ M +  +  +PV+D GR+VG I   D++ A++E
Sbjct: 3   VVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIE 50

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122
               D T+E+A++ + ++ I  L V+   E+  + GI T RD ++ +
Sbjct: 4   TVSPDTTLEEALELLRENGIRRLPVVD--EEGRLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           +D+V DAV  M +++  S+VV+ P +   + GI T++D LR
Sbjct: 87  NDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 145 ITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVE 190
           IT+  D  + HA +LM D  I  +PVI+ G++VG+++  D+  A+  
Sbjct: 4   ITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRS 50

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRA 187
             IT+  D +++ A++LM +  IR +PV+D G++VG+++  D+  A
Sbjct: 2   NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLA 47

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVE 190
            LITL  +A +  A +L    HI   PV+D G++VG++++ D+  A+  
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIAR 50

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 18/113 (15%)

Query: 79  SDDTVEDAVKNMAQ--HNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
            D+TV+D +K + +  H+ G  VV    +   + GI + RD L K            V E
Sbjct: 9   PDNTVKDVIKLIKETGHD-GFPVV----DNGKVVGIVSARDLLGK-------DPDETVEE 56

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           IM+ +  L+    + +I+ A ++M    I  +PV+D    +VG+I+  DV+R+
Sbjct: 57  IMSKD--LVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIRS 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           + RV +++    K +T   +  +  A+ LM + +IR +PV+D  G   G+I+++D+   
Sbjct: 57  HPRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAEK 113

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 19/114 (16%)

Query: 78  RSDDTVEDAVKNMAQHNIGSL-----VVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132
              DT++DA    A   + +      VV       H+ G+ T  D +R +   G      
Sbjct: 7   SPADTLDDA----ADALLATTQHEFPVV---DGDGHLVGLLTRDDLIRALAEGGPD---A 56

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDV 184
            V  +M  +    T+   A +   ++LM       VPV+D  GR+VG++++ +V
Sbjct: 57  PVRGVMRRD--FPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENV 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239991 cd04619, CBS_pair_6, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 82  TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
           T++ A K + +  I  +VV  P  +  +AG+ T+ D +R++   G       V  +MT  
Sbjct: 11  TLQRAAKILGEPGIDLVVVCDPHGK--LAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRA 68

Query: 142 NKLITLPSDANILH-AMQLMTDKHIRHVPVIDG--RIVGMISIVDVVRA 187
              +      ++LH   Q+M  + ++++PV+D   R +G+++  D ++ 
Sbjct: 69  ---VVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALKV 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 13/112 (11%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQ-HIAGIFTERDYLRKIVGQGRSPKYTRVAEIM 138
           D TV +A++   ++ I  + V + G+    + GI T RD              ++V+ +M
Sbjct: 98  DTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDI----------DFLSKVSVVM 147

Query: 139 TDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           T    L+T P    +  A +++ +  I  +P++D  G +VG+I+  D+ +A 
Sbjct: 148 TMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIEKAR 199

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137
            S  ++  A++ +    I  + V +  E   + GI ++R  +  +    RS         
Sbjct: 7   PSTASLFQAIEILGSGGIHRVAVTE-EESGEVIGILSQRRLVEFLWENARSFPGLDPLYP 65

Query: 138 MTDENKL------ITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDV 184
           +   +        I++  D  ++ A+ LM ++ I  V V+D  G ++G IS+ DV
Sbjct: 66  IPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMISIVDVVR 186
            ++T+P    I+ A ++M     R +PV+D   G++VG+I+  D+++
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 2/53 (3%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
            ++T+  DA+I  A +LM +++I H+PV+D  GR+VG+++  D+ +AV   +K
Sbjct: 3   PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKK 55

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           DDT+E+ ++ +A+       V   G+  +I G+   +D LR +       +   + +++ 
Sbjct: 9   DDTLEEILELIAESGHSRFPVYD-GDLDNIIGVVHVKDLLRALA---EGEEDLDLRDLLR 64

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVV 185
                + +P    +   ++ M  +      V+D  G   G++++ D++
Sbjct: 65  P---PLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
             D +V D    M ++NIG L V+  G+   + GI T  D LR
Sbjct: 81  EPDTSVSDVASLMLENNIGGLPVVDDGK---LVGIVTRTDILR 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 15/57 (26%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVR 186
           T V ++MT   KL+T+ S+ ++   ++L+ ++ +  + V++  G+++G+I+  D++R
Sbjct: 57  TTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVD-VVRAVVE 190
            ++T+  D  I  A +LM +  +  +PV +  R+VG+++  D VVRAV E
Sbjct: 2   DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 101 LKPGEQQHIAGIFT--ERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQ 158
           L+   +    G+    ER+ +  ++          V EIMT    ++ L     +   ++
Sbjct: 177 LELVSESAEEGVLEEEEREMINNVLDLDD----RTVREIMTPRTDIVALDLTDTVEELIE 232

Query: 159 LMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQQKGELKR 198
           L+ +     +PV DG    I+G++ + D++RA+++ Q     R
Sbjct: 233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLR 275

Length = 429

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVL---KPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
           + TV D ++   +    S+++    K G +  + GI T RD            K T V+E
Sbjct: 112 NHTVADVLEIKEKKGFSSILITVDGKVGGK--LLGIVTSRDIDF------VKDKSTPVSE 163

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI--DGRIVGMISIVDVVRA 187
           +MT   KL+   +  ++  A +++ +     +P++  +G +V ++S  D+ + 
Sbjct: 164 VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216

Length = 495

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVD 183
           A+IM+ +  ++T+ +D +I HA +L+ +  I+ +PV+D   R+VG+++  D
Sbjct: 248 ADIMSRD--VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRD 296

Length = 382

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 146 TLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQKGELKRLNEFI 203
            L +   +  A + + +       V+D  G +VG+I++ D++RA+   + GE   ++E  
Sbjct: 5   VLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVA 64

Query: 204 RGE 206
              
Sbjct: 65  TPP 67

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 108 HIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRH 167
            + GI T RDY        R    T+V + MT   KL+T      +  A  ++ D  +  
Sbjct: 142 KLLGIVTSRDYR-----ISRMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNT 196

Query: 168 VPVID--GRIVGMI 179
           +P++D  G +V ++
Sbjct: 197 LPIVDKNGNLVYLV 210

Length = 502

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 144 LITLPSDANILHAMQLMTDKHIRHVPVIDG--RIVGMISIVDVVRAV 188
           ++T+  D ++  A  L+    I+ +PV+DG  R+VG+++  D++R  
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA 50

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 145 ITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAV 188
            T+  +A I  A +L+       +PV++ GR+VG+IS  DV +A+
Sbjct: 5   KTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKAL 49

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
               D  V++A K + +++I  L V+   E   + GI T +D L+
Sbjct: 79  TVSPDTPVDEASKLLLENSISCLPVVD--ENGQLIGIITWKDLLK 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIA--GIFTERDYLRKI----VGQGRSP 129
            CR+   V   ++ +   NIG  V + P     +   G    RD         + +  S 
Sbjct: 113 ACRAVIRVVGDIRKI---NIGDSVRVGPTPVNKLVVEGKVIGRDDTANEILIDISKMVSI 169

Query: 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAV 188
              +V  +M+   KLIT+  D  +  A +L  +K IR  PV+D  +IVG+I++ D+ +A+
Sbjct: 170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAI 227

Query: 189 VE 190
             
Sbjct: 228 AN 229

Length = 294

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQ 191
               IM   + ++++  D +I   + LM DK I  +PVI+  ++VG I+  D+VRA++E 
Sbjct: 66  TAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEG 123

Query: 192 QKG 194
            + 
Sbjct: 124 MES 126

Length = 187

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMISIVDVVR 186
              I +PS A++  A++++    I  V V +   G ++G++S   +V 
Sbjct: 1   EPFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVE 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 14/138 (10%)

Query: 54  LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIF 113
           L++ +V E+ MT   D V         DTVE+ ++ + +     + V   G+  +I GI 
Sbjct: 203 LDDRTVREI-MTPRTDIV----ALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIV 256

Query: 114 TERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID- 172
             +D LR ++          +          + +P   ++   ++   ++      V+D 
Sbjct: 257 HVKDLLRALLDGQSDLDLRVLVR------PPLFVPETLSLSDLLEEFREERTHMAIVVDE 310

Query: 173 -GRIVGMISIVDVVRAVV 189
            G + G++++ D++  +V
Sbjct: 311 YGGVEGLVTLEDIIEEIV 328

Length = 429

>gnl|CDD|239955 cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 14/112 (12%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137
           R DD + DA+  M   ++ +L V+         G  T R+   +  G             
Sbjct: 7   RPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRRE-AARASGGCCGDHAEPFK-- 61

Query: 138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
                  +T+  D ++   +  M    +  +P +D  GR VG ++   +   
Sbjct: 62  -------VTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIADY 106

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
COG2905	610	Predicted signal-transduction protein containing c	99.85
COG2524	294	Predicted transcriptional regulator, contains C-te	99.84
COG3620	187	Predicted transcriptional regulator with C-termina	99.81
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.78
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.78
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.76
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.76
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.74
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.74
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.73
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.73
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.71
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.71
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.7
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.7
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.7
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.7
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.69
COG4109	432	Predicted transcriptional regulator containing CBS	99.69
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.69
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.69
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.69
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.69
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.69
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.69
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.68
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.68
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.68
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.68
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.68
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.68
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.67
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.67
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.67
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.67
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.67
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.67
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.67
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.67
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.67
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.67
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.66
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.66
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.66
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.66
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.66
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.65
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.65
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.65
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.65
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.64
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.64
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.64
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.64
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.64
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.64
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.64
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.64
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.63
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.63
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.63
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.62
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.62
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.62
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.62
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.61
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.61
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.6
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.6
PRK11573	413	hypothetical protein; Provisional	99.6
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.59
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.59
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.59
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.59
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.59
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.58
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.58
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.57
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.57
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.57
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.56
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.56
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.55
COG0517	117	FOG: CBS domain [General function prediction only]	99.54
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.53
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.51
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.51
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.49
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.43
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.38
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.26
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.24
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.23
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.18
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.02
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.01
COG3620	187	Predicted transcriptional regulator with C-termina	98.96
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.87
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.8
COG2524	294	Predicted transcriptional regulator, contains C-te	98.69
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.67
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.64
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.61
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.59
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.56
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.49
PRK11573	413	hypothetical protein; Provisional	98.47
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.47
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.43
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.4
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.35
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.35
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.32
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.31
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.3
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.3
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.3
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.3
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.29
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.29
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.28
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.28
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.27
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.27
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.26
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.26
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.25
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.25
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.25
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.25
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.23
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.23
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.22
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.22
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.21
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.21
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.21
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.21
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.2
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.19
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.18
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.18
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.17
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.17
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.17
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.16
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.16
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.16
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.15
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.15
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.15
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.14
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.14
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.14
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.14
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.13
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.13
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.13
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.13
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.13
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.13
COG4109	432	Predicted transcriptional regulator containing CBS	98.12
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.12
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.12
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.11
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.11
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.11
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.11
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.1
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.1
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.08
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.08
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.06
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.06
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.04
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.04
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.02
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.0
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.99
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.99
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.97
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.95
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.95
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.94
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.89
COG0517	117	FOG: CBS domain [General function prediction only]	97.88
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.88
COG2905	610	Predicted signal-transduction protein containing c	97.87
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.81
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.81
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.81
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.75
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.72
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.7
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.6
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.39
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.37
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.22
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.07
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	96.5
KOG2118	498	consensus Predicted membrane protein, contains two	96.33
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.3
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.61
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.24
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	94.74
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	92.85
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	92.23
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.71
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	90.81

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.85  E-value=8.1e-22  Score=167.70  Aligned_cols=166  Identities=22%  Similarity=0.360  Sum_probs=146.6

Q ss_pred             hhhHHHHHHhhhcCcccccccccccccccccCCCC---CccccCcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHH
Q 028491           13 EILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSS---PTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKN   89 (208)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~   89 (208)
                      ..+|++.|..|+..++.|+.||...++.+.++...   ..-.+.+-...+++++..+       +++|++.+|+.+|++.
T Consensus       102 y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~-------~~~v~~~~~i~~aa~k  174 (610)
T COG2905         102 YLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLP-------AVTVSPQASIQDAARK  174 (610)
T ss_pred             EecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCC-------CcccCccCcHHHHHHH
Confidence            36899999999999999999999888777652211   1111334456889999988       9999999999999999


Q ss_pred             HHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEee
Q 028491           90 MAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVP  169 (208)
Q Consensus        90 m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lp  169 (208)
                      |.+.|++.+.++  +.++...||||.+|++.++++++.+ ...+|+++|+.  |+++++.++.+.+|+-.|.+.+++++|
T Consensus       175 m~~~gv~s~v~l--~~~~~~~GIvT~~dl~~~v~~~g~~-~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~  249 (610)
T COG2905         175 MKDEGVSSLVVL--DDSGPLLGIVTRKDLRSRVIADGRS-KTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLP  249 (610)
T ss_pred             HHhcCCCeEEEE--cCCCCccceeehHHHHHHHHhcCCC-cccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceee
Confidence            999999999999  7889999999999999999998865 58899999999  999999999999999999999999999


Q ss_pred             eecCc-eeEEEEHHHHHHHHHH
Q 028491          170 VIDGR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       170 Vvd~~-~vGiit~~dll~~~~~  190 (208)
                      |++++ ++|+||.+||++....
T Consensus       250 V~e~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         250 VTEDGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             eecCCeeeEEeeHHHHHHhhCC
Confidence            99999 9999999999999874

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.84  E-value=3.6e-20  Score=144.02  Aligned_cols=123  Identities=26%  Similarity=0.440  Sum_probs=112.0

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +....+|+++|+++       +.++.+++|+.+|+++|.++++.+.||+  | +++++|++|..|+..++ +++  ..+.
T Consensus       168 siPk~~V~~~~s~~-------~i~v~~d~tl~eaak~f~~~~i~GaPVv--d-~dk~vGiit~~dI~~ai-a~g--~~~~  234 (294)
T COG2524         168 SIPKEKVKNLMSKK-------LITVRPDDTLREAAKLFYEKGIRGAPVV--D-DDKIVGIITLSDIAKAI-ANG--NLDA  234 (294)
T ss_pred             ecCcchhhhhccCC-------ceEecCCccHHHHHHHHHHcCccCCcee--c-CCceEEEEEHHHHHHHH-HcC--Cccc
Confidence            46678999999999       9999999999999999999999999999  4 45999999999987765 454  3579


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec-Cc-eeEEEEHHHHHHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~-~vGiit~~dll~~~~~  190 (208)
                      +|+++|++  +++++..|+.+.+|+++|..+++.+|.|+| ++ ++|+||++|+|+.+..
T Consensus       235 kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         235 KVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             cHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence            99999999  999999999999999999999999999999 45 9999999999998864

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.81  E-value=3.3e-19  Score=129.22  Aligned_cols=122  Identities=25%  Similarity=0.431  Sum_probs=110.5

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      ..+++..+|+.+       ++.+++++++.+++++|+.++++.+||+   ++++++|-||..++.++++..+.+.....+
T Consensus        63 ~~ita~~iM~sp-------vv~v~pdDsi~~vv~lM~~~g~SQlPVi---~~~k~VGsItE~~iv~~~le~~e~i~~~~v  132 (187)
T COG3620          63 TRITAKTIMHSP-------VVSVSPDDSISDVVNLMRDKGISQLPVI---EEDKVVGSITENDIVRALLEGMESIRSLRV  132 (187)
T ss_pred             ceEeHhhhccCC-------eeEECchhhHHHHHHHHHHcCCccCcee---eCCeeeeeecHHHHHHHHhccccchhhhhH
Confidence            467899999999       9999999999999999999999999999   459999999999999988877666678899


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~  190 (208)
                      +++|..  ++++++++.++....+++..|  .++.|++++ ++|+||+.|+++.+.+
T Consensus       133 r~vM~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         133 REVMGE--PFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             HHHhcC--CCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHHHHHhc
Confidence            999998  899999999999999988876  457788877 9999999999999865

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.78  E-value=6.9e-18  Score=140.52  Aligned_cols=121  Identities=26%  Similarity=0.465  Sum_probs=107.4

Q ss_pred             ccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           55 ENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        55 ~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      ...+|+++|.+  +       ++++++++|+.+|++.|.+++...+||+  |++|+++|+||.+|+.+ +...+......
T Consensus       200 ~~~~V~dim~~~~~-------~~~v~~~~sl~~a~~~~~~~~~~~~vVv--d~~g~lvGivt~~Dl~~-~~~~~~~~~~~  269 (326)
T PRK10892        200 LLLRVSDIMHTGDE-------IPHVSKTASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGDLRR-VFDMGIDLRQA  269 (326)
T ss_pred             ccCcHHHHhCCCCC-------CeEECCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEecHHHHH-HHhcCCCcccC
Confidence            57889999997  6       8999999999999999999888888989  78899999999999865 44433233457


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRA  187 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~  187 (208)
                      +++++|.+  ++.++.+++++.+|++.|.+++++++||++++ ++|+||+.|+++.
T Consensus       270 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~  323 (326)
T PRK10892        270 SIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence            89999998  89999999999999999999999999999988 9999999999874

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.78  E-value=3.1e-18  Score=135.70  Aligned_cols=130  Identities=25%  Similarity=0.442  Sum_probs=114.4

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH----hcCCC
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV----GQGRS  128 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~----~~~~~  128 (208)
                      .....+..++|+++       ++++++++++.+|.++|.++++..+||+  |++.+++|+||.+|++...-    +.-+.
T Consensus       241 ~~~~LtcadIMSrd-------Vvtv~~~ts~dhA~~ll~~H~ikaLPV~--d~~~rl~GiVt~~dl~~~a~~~p~qrlr~  311 (382)
T COG3448         241 RMGELTCADIMSRD-------VVTVSTDTSIDHARKLLQEHRIKALPVL--DEHRRLVGIVTQRDLLKHARPSPFQRLRF  311 (382)
T ss_pred             HhccccHHHhcCcc-------ceecCCcCChHHHHHHHHHcCccccccc--ccccceeeeeeHHHHhhccCcchHHHhhc
Confidence            45578999999999       9999999999999999999999999999  89999999999999886311    11112


Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhH
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~  193 (208)
                      .....++.+|++  ++.++.++++..+++..|.+.+.|++||+|+.  ++||||++|++..++.+..
T Consensus       312 ~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~  376 (382)
T COG3448         312 LRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS  376 (382)
T ss_pred             cCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence            345689999998  89999999999999999999999999999987  9999999999999987643

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.76  E-value=2.2e-17  Score=116.44  Aligned_cols=109  Identities=36%  Similarity=0.570  Sum_probs=97.2

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      +.++.+++++.++++.|.+++.+.+||+  +++ ++++|+++..|+++++..+.......++.++|..  ++.+++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~   78 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVE--KRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMD   78 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEE--ECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCC
Confidence            7889999999999999998999999999  676 8999999999998766654333345689999987  7999999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      +.++++.|.+++.+.+||+|++ ++|+|+..|+++
T Consensus        79 l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~  113 (114)
T cd04630          79 IKYCARLMERTNIRRAPVVENNELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhc
Confidence            9999999999999999999888 999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.76  E-value=3.7e-17  Score=115.47  Aligned_cols=109  Identities=20%  Similarity=0.354  Sum_probs=96.3

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++.+.|.+++...+||+  |++++++|+|+.+|+++.+..........++.++|..  ++.++.+++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l   78 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVC--DPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLL   78 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCH
Confidence            6789999999999999999999999999  7889999999999988755431223446789999987  89999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .+|++.|.+++.+++||+|+ + ++|+|+..|+++
T Consensus        79 ~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          79 HDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            99999999999999999986 5 999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.74  E-value=1e-16  Score=112.35  Aligned_cols=109  Identities=46%  Similarity=0.726  Sum_probs=96.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.++.++.++.+.|.+.+++.+||+  +++++++|+++.+|+++++..........++.++|.+  ++.++.+++++
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~   78 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNIGAVVVV--DDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTV   78 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcH
Confidence            7889999999999999999999999999  7779999999999998766544322235689999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||++++ ++|+||..|+++
T Consensus        79 ~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~  112 (113)
T cd04623          79 DEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhhc
Confidence            999999999999999999888 999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.74  E-value=5.5e-17  Score=114.12  Aligned_cols=106  Identities=18%  Similarity=0.291  Sum_probs=93.0

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.+|.+.|.+++.+.+||+  |++++++|+|+..|+.+. ..+  .....++.++|..  ++.++.+++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~-~~~--~~~~~~v~~~~~~--~~~~v~~~~~l   75 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVV--DEENKVLGQVTLSDLLEI-GPN--DYETLKVCEVYIV--PVPIVYCDSKV   75 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHhh-ccc--cccccChhheeec--CCcEECCCCcH
Confidence            7889999999999999998999999999  788999999999998752 111  1234579999987  78999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .+|++.|.+++.+.+||+|+ + ++|+||..|+++
T Consensus        76 ~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          76 TDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999999987 5 999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.73  E-value=9e-17  Score=133.53  Aligned_cols=121  Identities=26%  Similarity=0.389  Sum_probs=106.4

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+|+++|.++.+     ++++++++|+.+|.+.|.+++...+||+  |++|+++|+|+..|+.+.+....  ....++.
T Consensus       196 ~~~V~~im~~~~~-----~~~v~~~~sv~~a~~~~~~~~~~~~~Vv--d~~g~~iG~vt~~dl~~~~~~~~--~~~~~v~  266 (321)
T PRK11543        196 LNKVHHLMRRDDA-----IPQVALTASVMDAMLELSRTGLGLVAVC--DAQQQVQGVFTDGDLRRWLVGGG--ALTTPVN  266 (321)
T ss_pred             HhHHHHHhccCCC-----CcEeCCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEecHHHHHHHHhCCC--CcCCcHH
Confidence            6899999998632     7889999999999999998889999999  78899999999999876544322  2356799


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHH
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRA  187 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~  187 (208)
                      ++|.+  ++.++.+++++.+|++.|.+++..++||+|+ + ++|+||+.|++++
T Consensus       267 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        267 EAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             HhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            99988  8999999999999999999999999999986 4 9999999999864

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.73  E-value=1.8e-16  Score=112.86  Aligned_cols=109  Identities=16%  Similarity=0.301  Sum_probs=89.7

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhh------hccCCCeEEE
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI------MTDENKLITL  147 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~i------m~~~~~~~~v  147 (208)
                      +.++++++++.+|++.|.+++.+.+||+  +++++++|+++.+||+..+..+.......++.+.      |..  ++.++
T Consensus         3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv--~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v   78 (120)
T cd04641           3 IATARPDTPLIDVLDMLVERRVSALPIV--DENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRTC   78 (120)
T ss_pred             cEEEcCCCCHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeEE
Confidence            7889999999999999999999999999  7789999999999988654322211112234432      223  57899


Q ss_pred             cCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          148 PSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       148 ~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .+++++.++++.|.+++.+.+||+|+ + ++|+||+.|+++
T Consensus        79 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          79 SPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             cCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999987 4 999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=1.9e-16  Score=111.31  Aligned_cols=109  Identities=28%  Similarity=0.455  Sum_probs=96.1

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC-CCCccchhhhhccCCCeEEEcCCCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR-SPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~-~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      +.++++++++.++.+.|.+++.+.+||+  +++++++|+|+..++++.+..... .....++.++|..  ++.++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~   78 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKSKISGGPVV--DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDS   78 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhcCCCCccEE--CCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCc
Confidence            7889999999999999998888999999  788999999999998876654321 1235689999987  7899999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      +.++++.|.+++.+.+||+|++ ++|+||..|+++
T Consensus        79 l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~  113 (114)
T cd04629          79 IVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence            9999999999999999999889 999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.71  E-value=9.2e-17  Score=131.46  Aligned_cols=130  Identities=15%  Similarity=0.370  Sum_probs=111.0

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +...+|+++|++..+     ++++++++|+.++.+.+.+++++++||+  +++ ++++|+|+.+|++..+ ....  ...
T Consensus        64 l~~~~V~diMtpr~~-----i~~l~~~~sl~e~~~~i~~~~~sr~PV~--~~~~d~iiGiv~~kDll~~~-~~~~--~~~  133 (292)
T PRK15094         64 IADQRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFM-RSDA--EAF  133 (292)
T ss_pred             cCCCEEeEEccchHH-----EEEEeCCCCHHHHHHHHHhcCCcEEEEe--cCCCCcEEEEEEHHHHHhHh-hccC--CcC
Confidence            778899999999433     8999999999999999999999999999  554 7899999999988643 2221  234


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGEL  196 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~  196 (208)
                      .+.++|.+   ++++++++++.++++.|.+++.+.+||+|+.  ++|+||..|+++.+.+....+.
T Consensus       134 ~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~  196 (292)
T PRK15094        134 SMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEY  196 (292)
T ss_pred             CHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCcccc
Confidence            58899876   5689999999999999999999999999974  9999999999999998765443

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.70  E-value=4.7e-16  Score=110.44  Aligned_cols=110  Identities=22%  Similarity=0.449  Sum_probs=94.9

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++++.|..++..++||+  |++++++|+|+..||++...... .....+++++|...+++.++++++++
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~Givt~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHcCC-CccCCCHHHHhCCCCCcEEECCCCcH
Confidence            6889999999999999999999999999  77889999999999888665332 23466788999732258899999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC----c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG----R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~----~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||+|+    + ++|+||+.|+++
T Consensus        80 ~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999999999999974    5 999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.70  E-value=2.3e-16  Score=140.46  Aligned_cols=129  Identities=13%  Similarity=0.218  Sum_probs=113.2

Q ss_pred             cccCcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCC
Q 028491           50 EEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSP  129 (208)
Q Consensus        50 ~~~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~  129 (208)
                      +...+...+++|+|+++       +.++++++++.++.+.|.+++.+.+||+  |++++++|+|+.+|+.+.+..+. ..
T Consensus       440 ~~~~L~~~~V~dim~~~-------~~~v~~~~tl~ea~~~l~~~~~~~~~Vv--D~~g~lvGiVt~~dL~~~l~~~~-~~  509 (574)
T PRK01862        440 ERERLRTTQMRELIQPA-------QTVVPPTASVADMTRVFLEYPVKYLYVV--DDDGRFRGAVALKDITSDLLDKR-DT  509 (574)
T ss_pred             hhhHHhhCcHHHHhcCC-------CceeCCCCCHHHHHHHHHhCCCceEEEE--cCCCeEEEEEEHHHHHHHhhccc-cc
Confidence            34557789999999998       8899999999999999999999999999  78899999999999887554333 22


Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHHHHHH
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~~~~~  190 (208)
                      ...++.++|.+  ++.++++++++.++++.|.+++.+.+||+|+   + ++|+||+.|+++.+.+
T Consensus       510 ~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        510 TDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             ccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            34689999988  7899999999999999999999999999975   4 9999999999999865

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.70  E-value=4.3e-16  Score=113.64  Aligned_cols=109  Identities=24%  Similarity=0.443  Sum_probs=95.0

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCC----------------------Cc
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSP----------------------KY  131 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~----------------------~~  131 (208)
                      ++++++++++.++.+.|.+++.+.+||+  |++++++|+++..|+++.+.......                      ..
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVV--DDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCcceEE--CCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence            7889999999999999999999999999  78899999999999887543221110                      14


Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .+++++|.+  ++..+.+++++.++++.|.+.+.+++||++++ ++|+||..|+++
T Consensus        81 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR  134 (135)
T ss_pred             ccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence            579999987  78899999999999999999999999999888 999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.70  E-value=6.8e-16  Score=108.22  Aligned_cols=108  Identities=31%  Similarity=0.539  Sum_probs=92.8

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++++.++++.|.+++...++|.  + +++++|+++..|+++++..........++.++|..  ++.++++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l   77 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVM--E-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSI   77 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEe--e-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCH
Confidence            7889999999999999988887777777  3 58999999999988765533222235689999987  78899999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .++++.|.+++..++||++++ ++|+||..|+++
T Consensus        78 ~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~  111 (112)
T cd04625          78 DEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence            999999999999999999988 999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.69  E-value=9.4e-16  Score=107.84  Aligned_cols=107  Identities=23%  Similarity=0.420  Sum_probs=94.1

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++++.++++.|.+.+...+||+  +++++++|+++.+|+++.+....  ....++.++|..  ++.++++++++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~~~~--~~~~~v~~~~~~--~~~~v~~~~~l   77 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVV--DENGRLLGTVTDGDIRRALLKGL--SLDDPVSEVMNR--NPITAKVGSSR   77 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEE--CCCCCEEEEEEcHHHHHHHhcCC--CcCCCHHHhhcC--CCEEEcCCCCH
Confidence            6789999999999999999999999999  78899999999999877554322  235679999987  78899999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||+++ + ++|+||..|++.
T Consensus        78 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          78 EEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            99999999999999999985 4 999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.69  E-value=2e-16  Score=128.24  Aligned_cols=123  Identities=26%  Similarity=0.396  Sum_probs=112.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      -..|+|+|+|..+     ..++.+++++.+..++..+++.+++||+  |+..+++|+|+.+|+...       .++.++.
T Consensus       187 I~~Vedi~~P~~~-----~~yL~~~d~v~d~~~l~~kt~~sRfPVv--n~~~kvvGvVt~rDv~~~-------~~~t~ie  252 (432)
T COG4109         187 IITVEDIMTPLED-----TSYLRETDTVEDWLDLVEKTGHSRFPVV--NRSMKVVGVVTMRDVLDK-------KPSTTIE  252 (432)
T ss_pred             eeeHHHhcccccc-----ceeccccccHHHHHHHHHHcCCCcccee--cccceEEEEEEehhhhcC-------CCCccHH
Confidence            4578999997744     7899999999999999999999999999  899999999999997653       5688999


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHH
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKG  194 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~  194 (208)
                      .+|++  +|+++.+.+++..+.+.|...++..+||++++  ++|+||+.|+++.+...+.+
T Consensus       253 KVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~q  311 (432)
T COG4109         253 KVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQ  311 (432)
T ss_pred             HHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccC
Confidence            99999  99999999999999999999999999999988  99999999999999865543

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=1.1e-15  Score=107.14  Aligned_cols=109  Identities=34%  Similarity=0.606  Sum_probs=95.0

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      ++.++++++++.++++.|.+.+.+.+||+  ++ ++++|+++..|+++.+..........++.++|.+  ++.++.++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~   76 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVV--DN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNAS   76 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEE--EC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCC
Confidence            37889999999999999999899999999  54 4999999999998866544322345689999987  7899999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      +.++++.|.+++.+.+||+|++ ++|+|+..|+++
T Consensus        77 l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~  111 (112)
T cd04802          77 LNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence            9999999999999999999988 999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.69  E-value=7.6e-16  Score=108.64  Aligned_cols=108  Identities=23%  Similarity=0.414  Sum_probs=94.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++++.++.+.|.+.+.+.+||+  |++++++|+++.+||++.+.. .......+++++|..  ++.++.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~l   77 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVV--DRDGGVVGIITLPDLLRALEA-DEAGEPSAVDEVATP--PLLTVHPDEPL   77 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEE--cCCCCEEEEEEHHHHHHHHhc-ccccccccHHHhccC--CceEECCCCCH
Confidence            6788999999999999999999999999  788999999999998875543 222234568999987  89999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+.+||+|+   + ++|+||..|+++
T Consensus        78 ~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          78 AHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            99999999999999999975   5 999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=9.2e-16  Score=107.46  Aligned_cols=107  Identities=20%  Similarity=0.391  Sum_probs=93.9

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++++.|.+++.+.+||+  +++++++|+++..|++.... ... ....++.++|.+  ++.++.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~~-~~~~~v~~~~~~--~~~~v~~~~~l   76 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVK--DNEEKLKGVVTFTDILDLDL-FES-FLEKKVFNIVSQ--DVFYVNEEDTI   76 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEE--cCCCCEEEEEehHHhHHHHh-hcc-cccCcHHHHhcC--CcEEEcCCCcH
Confidence            7889999999999999999999999999  77899999999999876432 221 124579999987  78999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .+++..|.+++.+.+||++++ ++|+||..|+++
T Consensus        77 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~  110 (111)
T cd04626          77 DEALDIMREKQIGRLPVVDDNKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence            999999999999999999888 999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.69  E-value=7.4e-16  Score=109.99  Aligned_cols=110  Identities=31%  Similarity=0.536  Sum_probs=94.8

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---------CCCccchhhhhccCCC
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---------SPKYTRVAEIMTDENK  143 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---------~~~~~~v~~im~~~~~  143 (208)
                      ++.++++++++.++.+.|.+.+++++||+  +++++++|+++..||+..+.....         .....++.++|..  +
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~   78 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP--P   78 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEE--CCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC--C
Confidence            38899999999999999999999999999  677999999999998765432221         0124578999987  7


Q ss_pred             eEEEcCCCCHHHHHHHHHhcCCCEeeeec-Cc-eeEEEEHHHHHH
Q 028491          144 LITLPSDANILHAMQLMTDKHIRHVPVID-GR-IVGMISIVDVVR  186 (208)
Q Consensus       144 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~-~vGiit~~dll~  186 (208)
                      +.++.+++++.++++.|.+++.+.+||+| ++ ++|+||..|+++
T Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          79 VVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             CeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            99999999999999999999999999998 45 999999999986

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.69  E-value=1.3e-15  Score=106.66  Aligned_cols=108  Identities=31%  Similarity=0.436  Sum_probs=94.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      ++.+++++++.++.+.|.+.+...+||+  |+ ++++|+++..|++..+.... .....++.++|.+  ++..+++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~~~--~~~~v~~~~~l   76 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVR--DG-DPRLGIVTRTDLLDAVLLDG-LPSSTPVGEIATF--PLITVDPDDFL   76 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe--cC-CeEEEEEEHHHHHHHHHcCC-CCCCCCHHHHhCC--CcEEECCCCcH
Confidence            6789999999999999998899999999  66 88999999999886543322 2346789999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRA  187 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~  187 (208)
                      .++++.|.+++.+.+||++++ ++|+||..|++++
T Consensus        77 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~~  111 (111)
T cd04589          77 FNALLLMTRHRIHRVVVREGGEVVGVLEQTDLLSF  111 (111)
T ss_pred             HHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhhcC
Confidence            999999999999999999988 9999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=4.1e-16  Score=107.63  Aligned_cols=91  Identities=18%  Similarity=0.354  Sum_probs=82.1

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCC-CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~-~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      ++++++++|+.+|.+.|.+++.+++||+  |+ +++++|+||..|+.+.+.                    +.++.++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~~Givt~~Dl~~~~~--------------------~~~v~~~~~   60 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLW--DSRKQQFVGMLTITDFILILR--------------------LVSIHPERS   60 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEE--eCCCCEEEEEEEHHHHhhhee--------------------eEEeCCCCc
Confidence            7899999999999999999999999999  66 489999999999875311                    668999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~  186 (208)
                      +.+|++.|.+++++++||+|+  + ++|+||.+|++.
T Consensus        61 l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          61 LFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            999999999999999999984  5 999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.68  E-value=3.1e-16  Score=112.70  Aligned_cols=110  Identities=11%  Similarity=0.187  Sum_probs=94.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++|+.++++.|.+++..++||+  |++++++|+++..|+++.+..+.. ....+++++|.+  ++.++.+++++
T Consensus         4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~Gii~~~dl~~~~~~~~~-~~~~~v~~im~~--~~~~v~~~~~~   78 (124)
T cd04608           4 PVTVLPTVTCAEAIEILKEKGFDQLPVV--DESGKILGMVTLGNLLSSLSSGKV-QPSDPVSKALYK--QFKRVNKNDTL   78 (124)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHHhcc-CCCCcHHHHhhc--cceecCCCCCH
Confidence            7889999999999999999999999999  788999999999998876654432 357899999998  89999999999


Q ss_pred             HHHHHHHH---------hcCCCEeeeecC-c-eeEEEEHHHHHHHH
Q 028491          154 LHAMQLMT---------DKHIRHVPVIDG-R-IVGMISIVDVVRAV  188 (208)
Q Consensus       154 ~~a~~~~~---------~~~~~~lpVvd~-~-~vGiit~~dll~~~  188 (208)
                      .++.+++.         +.+.+.+||+++ + ++|+||..|+++++
T Consensus        79 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          79 GKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             HHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence            99999653         335677888886 4 99999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.68  E-value=4.3e-16  Score=134.87  Aligned_cols=121  Identities=25%  Similarity=0.455  Sum_probs=107.6

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      .+...+++++|.++       ++++++++|+.++.+.|.+++++.+||+  |++++++|+|+.+||...       ....
T Consensus        85 ~l~~VKv~~iMi~~-------pvtv~~d~tv~eA~~~m~~~~~s~l~VV--D~~gklvGIVT~rDL~~~-------~~~~  148 (479)
T PRK07807         85 VVAWVKSRDLVFDT-------PVTLSPDDTVGDALALLPKRAHGAVVVV--DEEGRPVGVVTEADCAGV-------DRFT  148 (479)
T ss_pred             HHhhcccccccccC-------CeEECCCCCHHHHHHHHHhcCCceEEEE--CCCCeEEEEEeHHHHhcC-------ccCC
Confidence            35567788999888       9999999999999999999999999999  788999999999997431       1246


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~  191 (208)
                      +++++|+.  +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..||++.....
T Consensus       149 ~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        149 QVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            79999998  8999999999999999999999999999996 4 99999999999977654

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=8.3e-16  Score=108.36  Aligned_cols=107  Identities=21%  Similarity=0.391  Sum_probs=91.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCC----ccchhhhhccCCCeEEEcC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK----YTRVAEIMTDENKLITLPS  149 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~----~~~v~~im~~~~~~~~v~~  149 (208)
                      ++++++++|+.++.+.|.+++.+.+||+  |++++++|+++.+|+++++........    ..++.++|.+  ++.++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~   78 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGYSAIPVL--DKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVIID   78 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCCceeeeE--CCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceecC
Confidence            7899999999999999999999999999  788999999999998876543221111    4679999988  7999999


Q ss_pred             CCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          150 DANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       150 ~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      ++++.++++.|.+.+  .+||+++ + ++|+||..|+++
T Consensus        79 ~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          79 DADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            999999999998865  5899986 4 999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1.3e-15  Score=106.64  Aligned_cols=106  Identities=24%  Similarity=0.426  Sum_probs=93.9

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++.+.|.+.+...+||+  +++++++|+|+..++.+.+....   ...++.++|..  ++.++++++++
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~---~~~~v~~~~~~--~~~~i~~~~~~   75 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVV--DGDGHLVGLLTRDDLIRALAEGG---PDAPVRGVMRR--DFPTVSPSATL   75 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEE--CCCCcEEEEeeHHHHHHHHHhcC---CCCcHHHHhcC--CCcEECCCCcH
Confidence            7889999999999999988889999999  77799999999999886554322   34689999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+++...+||+++ + ++|++|..|+.+
T Consensus        76 ~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          76 DAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999987 5 999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1e-15  Score=110.83  Aligned_cols=109  Identities=34%  Similarity=0.568  Sum_probs=94.6

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCc--------------------c
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKY--------------------T  132 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~--------------------~  132 (208)
                      ++.++++++++.++.+.|.+.+.+++||+  |++++++|+++..+|+..+..... ...                    .
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~i~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   78 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVV--DNEGRVVGIVSEGDLIRKIYKGKG-LFYVTLLYSVIFLDESKIKKLLGK   78 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceE--CCCCCEEEEEeHHHHHHHHhccCC-cccccccccccccchHHHHHHcCC
Confidence            37889999999999999998899999999  788999999999998875543221 111                    2


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      ++.++|.+  ++..+.+++++.+++..|.+.+.+.+||+|++ ++|++|..|+++
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence            78899987  78999999999999999999999999999889 999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.68  E-value=1.3e-15  Score=131.76  Aligned_cols=128  Identities=18%  Similarity=0.359  Sum_probs=111.4

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHh-----cCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQ-----HNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR  127 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-----~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~  127 (208)
                      .++..+++++|+++       ++++++++|+.++.+.|++     ++...+||+  |++++++|+|+.+|++.+      
T Consensus       127 ~~~e~tvg~iMt~~-------~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv--d~~~~l~GvV~l~dLl~a------  191 (449)
T TIGR00400       127 SYSDDSAGRIMTIE-------YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT--NESKHLKGVLSIRDLILA------  191 (449)
T ss_pred             CCCcchHHHhCcCc-------eEEECCCCcHHHHHHHHHhcCCCccceeEEEEE--CCCCeEEEEEEHHHHhcC------
Confidence            46678999999988       9999999999999999975     456789999  788999999999997642      


Q ss_pred             CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHH
Q 028491          128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKR  198 (208)
Q Consensus       128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~  198 (208)
                       .++.+++++|.+  +++++++++++.+|++.|.+++...+||+|++  ++|+||..|+++.+.++..++..+
T Consensus       192 -~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ed~~~  261 (449)
T TIGR00400       192 -KPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEATEDFYM  261 (449)
T ss_pred             -CCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhHHHHHH
Confidence             235689999988  78999999999999999999999999999864  999999999999998876654443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2.8e-15  Score=105.09  Aligned_cols=107  Identities=39%  Similarity=0.564  Sum_probs=94.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++.+.|.+.+...+||+  +++++++|+++..|+++.+....  ....++.++|..  ++.++.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~l~~~~~~~~--~~~~~v~~~~~~--~~~~v~~~~~~   76 (112)
T cd04624           3 VVTVDPDTSIREAAKLMAEENVGSVVVV--DPDERPIGIVTERDIVRAVAAGI--DLDTPVSEIMTR--DLVTVDPDEPV   76 (112)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEeeHHHHHHHHhccC--CCccCHHHhccC--CCEEECCCCcH
Confidence            6789999999999999999999999999  77899999999999887654332  235689999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+++...+||+++ + ++|++|..|+++
T Consensus        77 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          77 AEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            99999999999999999987 5 999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.67  E-value=8.6e-16  Score=111.63  Aligned_cols=110  Identities=27%  Similarity=0.499  Sum_probs=94.7

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---------------------CCCc
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---------------------SPKY  131 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---------------------~~~~  131 (208)
                      ++.++.+++++.++.+.|.++++.++||+  |++++++|+|+..|+++.+.....                     ....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVV--DDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEE--CCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            37889999999999999999999999999  788999999999998764322100                     0134


Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .++.++|.+  ++.++.+++++.+++..|.+.+.+++||+|++ ++|+||+.|+++
T Consensus        81 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence            678999987  79999999999999999999999999999977 999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.67  E-value=1e-15  Score=107.84  Aligned_cols=108  Identities=19%  Similarity=0.340  Sum_probs=91.7

Q ss_pred             eEEecCCchHHHHHHHHHhcC-CcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHN-IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~-~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      +.++++++++.++.+.|.+++ ...+||+  |++++++|+|+..||+.... +.  ....++.++|.+..+++++.++++
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~~--~~~~~v~~~~~~~~~~~~v~~~~~   77 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVV--DNEGRYVGIISLADLRAIPT-SQ--WAQTTVIQVMTPAAKLVTVLSEES   77 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEE--cCCCcEEEEEEHHHHHHHHH-hh--ccccchhhhhcccccceEECCCCc
Confidence            788999999999999997664 8899999  78899999999999887543 22  225678999975224679999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      +.+|++.|.+++.+++||+|+ + ++|+|+..|+++
T Consensus        78 l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          78 LAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            999999999999999999987 5 999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.67  E-value=1.9e-15  Score=105.55  Aligned_cols=102  Identities=25%  Similarity=0.371  Sum_probs=92.2

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++.+.|.+++...+||+  |++++++|+++..+++..       ....+++++|..  ++.++++++++
T Consensus         4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~--~~~~v~~~~~l   72 (108)
T cd04596           4 TGYLTTTDTVKDWHELNKETGHSRFPVV--DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTK--NPITVNPKTSV   72 (108)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCCceeEE--CCCCeEEEEecHHHHhcc-------cccccHHHHhcC--CCeEECCCCCH
Confidence            7899999999999999999999999999  788999999999998642       135689999987  78999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+.+||+++ + ++|++|..|+++
T Consensus        73 ~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          73 ASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999985 4 999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.67  E-value=1.6e-15  Score=106.45  Aligned_cols=109  Identities=16%  Similarity=0.290  Sum_probs=95.2

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      +++++.+++++.++.+.|.+.+.+.+||+  +++++++|+|+..|+++.+ .+.......++.++|.+  ++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~-~~~~~~~~~~v~~~~~~--~~~~v~~~~~   76 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDDIREIL-FDPSLYDLVVASDIMTK--PPVVVYPEDS   76 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEE--CCCCCEEEEEEHHHHHHHH-hcccccccEEHHHhccC--CCcEEcCCCC
Confidence            37889999999999999999999999999  7788999999999987654 33322223789999988  7999999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~  186 (208)
                      +.++++.|...+.+.+||+++  + ++|+++..|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          77 LEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            999999999999999999987  5 999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2.4e-15  Score=105.47  Aligned_cols=108  Identities=33%  Similarity=0.650  Sum_probs=93.8

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++++.++.+.|.+++..++||+  ++ ++++|+++..|++.+....+......++.++|..  .+.++.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~   77 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVC--EN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDV   77 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCH
Confidence            7889999999999999999999999999  56 9999999999987544444433333459999987  78899999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|...+.+++||+++ + ++|+|+..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          78 DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999999987 5 999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.67  E-value=2.6e-15  Score=104.98  Aligned_cols=105  Identities=25%  Similarity=0.464  Sum_probs=93.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +++++.++++.++.+.|.+++.+++||+  ++ ++++|+++..|+.+.+ ...  ....++.++|..  ++.++++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~dl~~~~-~~~--~~~~~~~~~~~~--~~~~v~~~~~l   75 (110)
T cd04595           4 VKTVRPEATIEEARELLLRYGHTALPVV--EG-GRVVGIISRRDVEKAL-RHG--LGHAPVKDYMST--DVVTVPPDTPL   75 (110)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCeeeEe--eC-CEEEEEEEHHHHHHHH-hcc--cccCcHHHHhcC--CCEEECCCCcH
Confidence            7889999999999999998899999999  66 9999999999987643 332  246789999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||++++ ++|+||..|+++
T Consensus        76 ~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~  109 (110)
T cd04595          76 SEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence            999999999999999999977 999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.67  E-value=3e-16  Score=134.05  Aligned_cols=129  Identities=14%  Similarity=0.296  Sum_probs=110.7

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      .+.+.+|+++|+|..+     +++++.++|+.++.+.+.+++++++||++ ++.++++|+|+.+|++..+ ..    ...
T Consensus       187 ~l~~~~v~diMtpr~~-----v~~l~~~~~~~e~~~~~~~~~~sR~PV~~-~~~d~ivGiv~~kDll~~~-~~----~~~  255 (408)
T TIGR03520       187 SFGNTDTKQVMRPRLD-----IFALDIETSFSEIIPKIIENGYSRIPVYK-ETIDNITGVLYIKDLLPHL-NK----KNF  255 (408)
T ss_pred             ccCCCEeeeeCCchHh-----EEEEECCCCHHHHHHHHHhCCCCEEEEEc-CCCCceEEEEEHHHHHhHh-cc----CCC
Confidence            4678899999998534     89999999999999999999999999994 2347899999999988642 11    234


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~  195 (208)
                      ++.++|.+   +.++++++++.++++.|++++.+.++|+|+ + ++|+||.+|+++.+.++..++
T Consensus       256 ~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de  317 (408)
T TIGR03520       256 DWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE  317 (408)
T ss_pred             CHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc
Confidence            67888865   789999999999999999999999999998 4 999999999999998776544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.67  E-value=3e-15  Score=104.78  Aligned_cols=107  Identities=37%  Similarity=0.680  Sum_probs=94.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++.+.|.+++.+.+||+  ++ ++++|+++..+++..+..... ....++.++|..  ++.++++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~-~~~~~i~~~~~~--~~~~v~~~~~l   76 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRVSSLLVV--DD-GRLVGIVTDRDLRNRVVAEGL-DPDTPVSEVMTA--PPITIPPDATV   76 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHhccCC-CccCCHHHHhCC--CCeEECCCCcH
Confidence            7889999999999999998889999999  55 999999999998765544332 234679999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||++++ ++|++|..|+++
T Consensus        77 ~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~  110 (111)
T cd04800          77 FEALLLMLERGIHHLPVVDDGRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence            999999999999999999888 999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.67  E-value=2.1e-15  Score=105.81  Aligned_cols=108  Identities=30%  Similarity=0.542  Sum_probs=93.8

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++++.++.+.|.+++.+.+||+  ++ ++++|+|+..|++..+...+......++.++|.+  ++.++.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l   77 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREKRVSCVLVM--DG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPV   77 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCH
Confidence            6789999999999999998899999999  56 9999999999987655544322222689999987  78899999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||+++ + ++|+|+..|++.
T Consensus        78 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          78 LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            99999999999999999987 5 999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.1e-15  Score=108.46  Aligned_cols=109  Identities=25%  Similarity=0.389  Sum_probs=93.1

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC------------CCCCccchhhhhccC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG------------RSPKYTRVAEIMTDE  141 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~------------~~~~~~~v~~im~~~  141 (208)
                      +.++.+++++.++.+.|.+.+.+.+||+  +++++++|+++.+|+...+....            ......++.++|.. 
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS-   79 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEE--CCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC-
Confidence            7789999999999999999999999999  78899999999999876543210            01224578999987 


Q ss_pred             CCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHH
Q 028491          142 NKLITLPSDANILHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVR  186 (208)
Q Consensus       142 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~  186 (208)
                       +++++.+++++.+++..|.+.+.+.+||+++   + ++|+||..|+++
T Consensus        80 -~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          80 -PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             -CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence             7999999999999999999999999999954   5 999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2e-15  Score=107.92  Aligned_cols=109  Identities=25%  Similarity=0.380  Sum_probs=89.3

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCC--------CccchhhhhccCCC
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSP--------KYTRVAEIMTDENK  143 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~--------~~~~v~~im~~~~~  143 (208)
                      ++.++.+++++.++++.|.+.+..++||+  |++ ++++|+|+..|+++.+.......        ....+.++|..  +
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   77 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVT--EEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS--D   77 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEE--eCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC--C
Confidence            37889999999999999998889999999  676 89999999999887654321110        00112346666  7


Q ss_pred             eEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHH
Q 028491          144 LITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVV  185 (208)
Q Consensus       144 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll  185 (208)
                      +.++.+++++.+|++.|.+++.+++||+|+ + ++|+||..|+-
T Consensus        78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          78 VISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            899999999999999999999999999986 4 99999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.66  E-value=5.6e-15  Score=103.20  Aligned_cols=105  Identities=29%  Similarity=0.453  Sum_probs=92.4

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      ++.++.+++++.++.+.|.+++.+.+||+  +++++++|+++..++++.+.. .    ..++.++|..  ++.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~-~----~~~~~~~~~~--~~~~v~~~~~   73 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVV--DEDGRLVGIVTSWDISKAVAR-D----KKSVEDIMTR--NVITATPDEP   73 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEE--CCCCcEEEEEeHHHHHHHHhh-C----ccCHHHhcCC--CCeEECCCCc
Confidence            37889999999999999999999999999  778999999999998765432 2    2358999977  7899999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~  186 (208)
                      +.++++.|.+++.+.+||++++  ++|+|++.|+++
T Consensus        74 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          74 IDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            9999999999999999999864  999999999965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.5e-15  Score=106.91  Aligned_cols=109  Identities=30%  Similarity=0.517  Sum_probs=94.7

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC--------CCccchhhhhccCCCeE
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS--------PKYTRVAEIMTDENKLI  145 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~--------~~~~~v~~im~~~~~~~  145 (208)
                      +.++.+++++.++.+.|.+.+++.+||+  +++++++|+++..++++.+......        ....++.++|..  ++.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~   78 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVV--NEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--DVL   78 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCcccccEE--CCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC--CCe
Confidence            7889999999999999999999999999  7779999999999988754322211        135678999987  799


Q ss_pred             EEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          146 TLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       146 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      ++.+++++.++++.|.+.+.+.+||+++ + ++|+||..|+++
T Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          79 TVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            9999999999999999999999999988 5 999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=3.7e-15  Score=104.61  Aligned_cols=108  Identities=26%  Similarity=0.438  Sum_probs=94.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +..+.+++++.++++.|.+.+.+.+||+  |++++++|+++.+|+++.+.... .....++.++|..  ++.++.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~--~~~~v~~~~~l   77 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVV--DDKKRLVGIITRYDVLSYALESE-ELKDAKVREVMNS--PVITIDANDSI   77 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEE--cCCCCEEEEEEHHHHHHhhhhhh-hhcCCcHHHhccC--CceEECCCCcH
Confidence            5778999999999999999999999999  77899999999999876544332 2345689999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~  186 (208)
                      .++++.|.+++.+.+||++++  ++|++|..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          78 AKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            999999999999999999864  999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.6e-15  Score=107.87  Aligned_cols=109  Identities=27%  Similarity=0.390  Sum_probs=89.9

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH-----HHhcCCCCCccchhhhhccCCCeEE--
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK-----IVGQGRSPKYTRVAEIMTDENKLIT--  146 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~-----~~~~~~~~~~~~v~~im~~~~~~~~--  146 (208)
                      +.++.+++++.++++.|.+.+...+||+  +++++++|+++..|+.+.     +..........+++++|.+  ++..  
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~   78 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVV--DSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKA   78 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhcc
Confidence            6889999999999999998999999999  778999999999998752     2222122345779999976  4433  


Q ss_pred             E----cCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHH
Q 028491          147 L----PSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVR  186 (208)
Q Consensus       147 v----~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~  186 (208)
                      +    .+++++.++++.|.+++.+.+||+|+  + ++|+||..|+++
T Consensus        79 ~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          79 LDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            3    36889999999999999999999985  5 999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.1e-15  Score=106.87  Aligned_cols=109  Identities=28%  Similarity=0.443  Sum_probs=93.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCC----------CCccchhhhhccCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRS----------PKYTRVAEIMTDEN  142 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~----------~~~~~v~~im~~~~  142 (208)
                      +.++.++.++.++.+.|.+.+...+||+  +++ ++++|+|+..|++..+......          ....++.++|.+  
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~--d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGFRRLPVV--DEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR--   78 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCcccceeE--eCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC--
Confidence            7889999999999999999999999999  666 9999999999988654322110          123578899987  


Q ss_pred             CeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          143 KLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       143 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      ++.++++++++.++++.|.+.+.+.+||+++ + ++|+||..|+++
T Consensus        79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            7999999999999999999999999999987 6 999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.8e-15  Score=107.66  Aligned_cols=108  Identities=22%  Similarity=0.344  Sum_probs=89.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc-------------hhhhhcc
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR-------------VAEIMTD  140 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~-------------v~~im~~  140 (208)
                      ++++++++++.++++.|.+++.+.+||+  |++++++|+++..|+++...... .....+             ..+.|..
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~--d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVV--DEKGKLIGNISASDLKGLLLSPD-DLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEE--CCCCcEEEEEEHHHhhhhhcCcc-hhhcccchhhhhhhhhcccccccccC
Confidence            7889999999999999999999999999  78899999999999876542221 111111             2235555


Q ss_pred             CCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          141 ENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       141 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                        ++.++++++++.+|++.|.+++.+++||+|+ + ++|+||..|+++
T Consensus        80 --~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          80 --PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             --CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence              7899999999999999999999999999987 4 999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.65  E-value=5.7e-15  Score=102.48  Aligned_cols=101  Identities=19%  Similarity=0.277  Sum_probs=90.0

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.+++++.++.+|++.|.+++...+||+  +++|+++|+++..|+++..        ..++.++|.+  ++.++.+++++
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~--d~~g~~~Giv~~~dl~~~~--------~~~~~~~~~~--~~~~~~~~~~~   70 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRREAARAS--------GGCCGDHAEP--FKVTVSVDDDL   70 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEeHHHHHHhc--------ccchhhhccc--CCEEECCCCCH
Confidence            7789999999999999998999999999  7789999999999987631        2358889887  67889999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~  186 (208)
                      .++++.|.+++...+||+|++  ++|+|+..|+++
T Consensus        71 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          71 RIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999999999999999874  999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.64  E-value=5.3e-15  Score=102.38  Aligned_cols=100  Identities=33%  Similarity=0.517  Sum_probs=90.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++++.++.+.|.+++...+||+  + +++++|+++..+++..       ....++.++|.+  ++.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d-~~~~~Giv~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~l   70 (105)
T cd04599           3 PITIDPLDSVGRAARLMEKHRIGGLPVV--E-DGKLVGIITSRDVRRA-------HPNRLVADAMTR--EVVTISPEASL   70 (105)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEehHHhhcc-------cccCCHHHHccC--CCEEECCCCCH
Confidence            6789999999999999998898999999  5 5899999999998753       124579999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVV  185 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll  185 (208)
                      .++++.|.+++...+||+|++ ++|+||..|++
T Consensus        71 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          71 LEAKRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             HHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence            999999999999999999989 99999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.64  E-value=7.3e-15  Score=102.80  Aligned_cols=105  Identities=17%  Similarity=0.367  Sum_probs=90.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      +.++++++++.++.+.|.+.+.+.+||+  +++ ++++|+++..++++... +...  ..++.+++.   ++.++.++++
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~--~~~~~~~~G~v~~~~l~~~~~-~~~~--~~~~~~~~~---~~~~v~~~~~   74 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVY--DGDLDNIIGVVHVKDLLRALA-EGEE--DLDLRDLLR---PPLFVPESTP   74 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEE--CCCCceEEEEEEHHHHHHHHH-cCCC--cCCHHHHhc---CCeecCCCCc
Confidence            7889999999999999999899999999  677 89999999999887543 3221  256777764   4789999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      +.++++.|.+++.+++||+++ + ++|+||+.|+++
T Consensus        75 l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          75 LDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            999999999999999999987 5 999999999875

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=2.4e-15  Score=103.28  Aligned_cols=92  Identities=25%  Similarity=0.473  Sum_probs=83.1

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      +++++.+++++.+|++.|.+++++.+||+  |++++++|+++..|++..       .             .+.+++++++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~-------~-------------~~~~v~~~~~   59 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVL--DDDGKLSGIITERDLIAK-------S-------------EVVTATKRTT   59 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHhcC-------C-------------CcEEecCCCC
Confidence            47889999999999999999999999999  788999999999997652       0             1668999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      +.++++.|.+++.+++||+++ + ++|+||.+|+++
T Consensus        60 l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          60 VSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999999999999999987 5 999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.64  E-value=9.7e-15  Score=101.99  Aligned_cols=105  Identities=26%  Similarity=0.472  Sum_probs=92.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++.+.|.+.+++++||+  ++ ++++|+++..|+++.. ..+.  ...++.++|..  ++.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~~l~~~~-~~~~--~~~~v~~~~~~--~~~~v~~~~~~   74 (110)
T cd04588           3 LITLNPNATLREAARLFNTHHIHGAPVV--DD-GKLVGIVTLSDIAHAI-ARGL--ELAKVKDVMTK--DVITIDEDEQL   74 (110)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEHHHHHHHH-hccc--cccCHHHHhcC--CceEECCCCCH
Confidence            7889999999999999999999999999  66 8999999999988753 3322  23679999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+.+.+.+||+++ + ++|+|+..|+++
T Consensus        75 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          75 YDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            99999999999999999987 5 999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=9.1e-15  Score=103.02  Aligned_cols=107  Identities=30%  Similarity=0.545  Sum_probs=90.0

Q ss_pred             eEEecCCchHHHHHHHHHhcC-CcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCC--
Q 028491           74 WLCCRSDDTVEDAVKNMAQHN-IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSD--  150 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~-~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--  150 (208)
                      +.++++++++.++.+.|.+++ ...+||+  + +++++|+++..|+++.+. ........++.++|..  ++.++.++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~   76 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVV--E-KGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQ--PVVTLQESEI   76 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEc--C-CCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCC--CcEEEecccc
Confidence            678999999999999998888 6677877  4 589999999999886443 3222234689999987  78888887  


Q ss_pred             CCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          151 ANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       151 ~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      +++.+|++.|.+++.+.+||+|+ + ++|+||+.|+++
T Consensus        77 ~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          77 QDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             cCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            78999999999999999999986 4 999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.64  E-value=4.4e-15  Score=103.07  Aligned_cols=99  Identities=18%  Similarity=0.297  Sum_probs=88.6

Q ss_pred             EEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHH
Q 028491           75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANIL  154 (208)
Q Consensus        75 ~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~  154 (208)
                      .++.+++++.++.+.|.+.+.+.+||+  ++ ++++|+++..|++++        ...++.++|..  ++.+++++.++.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~--------~~~~~~~~~~~--~~~~v~~~~~l~   70 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVV--DY-NKFLGAVYLKDIENA--------TYGDVVDYIVR--GIPYVRLTSTAE   70 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHHhhh--------cccchhhhhhc--CCcEEcCCCCHH
Confidence            568999999999999999999999999  66 999999999998753        12457888877  789999999999


Q ss_pred             HHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          155 HAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       155 ~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      +++..|.+++.+.+||++++ ++|+||..|+++
T Consensus        71 ~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~~  103 (104)
T cd04594          71 EAWEVMMKNKTRWCPVVDDGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHHHHHHcCcceEEEEECCEEEEEEEHHHhhc
Confidence            99999999999999999988 999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.64  E-value=9.4e-15  Score=101.72  Aligned_cols=103  Identities=23%  Similarity=0.409  Sum_probs=91.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +..++++.++.++.+.|.+.+..++||+  +++++++|+++..|++... .     ...++.++|..  .+.++++++++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~-~-----~~~~v~~~~~~--~~~~v~~~~~~   73 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLESLEQAY-K-----EAKSLEDIMLE--DVFTVQPDASL   73 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCceEEEE--cCCCcEEEEEEHHHHHHHh-h-----cCCcHhHhhcC--CceEECCCCcH
Confidence            7789999999999999999999999999  7789999999999987642 1     23578899987  78999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||+++ + ++|++|.+|+++
T Consensus        74 ~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          74 RDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            99999999999999999986 4 999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.64  E-value=4e-15  Score=129.52  Aligned_cols=121  Identities=20%  Similarity=0.224  Sum_probs=102.6

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      ..|+++|......    ++++++++|+.+|++.|.+++++.+||+  |+   +++++|+||.+||...   .  ...+.+
T Consensus        94 ~kVk~~~~g~i~~----~~tV~pd~tl~eAl~~m~~~~~~~vpVV--D~~~~~gkLvGIVT~~DLr~~---~--~~~~~~  162 (502)
T PRK07107         94 RRVKNYKAGFVVS----DSNLTPDNTLADVLDLKEKTGHSTVAVT--EDGTAHGKLLGIVTSRDYRIS---R--MSLDTK  162 (502)
T ss_pred             HHHHHHhcCCcCC----CCEeCCCCcHHHHHHHHHhcCCCeEEEE--eCCCcCCEEEEEEEcHHhhcc---c--cCCCCC
Confidence            4678888643121    5789999999999999999999999999  54   5899999999997532   1  134678


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAV  188 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~  188 (208)
                      ++++|++.++++++++++++.+|++.|.+++++.+||+|++  ++|+||..|+++..
T Consensus       163 V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            99999864478999999999999999999999999999964  99999999999975

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.63  E-value=1.1e-14  Score=102.10  Aligned_cols=108  Identities=31%  Similarity=0.486  Sum_probs=93.9

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++.+.|.+.+.+.+||+  +++++++|+++..++++.+. ........++.++|.+  ++.++++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~~   78 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRKGLGMTAVV--DEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTR--NPKTIDPDALA   78 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhcCccEEEEE--cCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhcc--CCeEECCCCcH
Confidence            6788999999999999988888999999  77899999999999876543 3322334579999988  78899999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||+++ + ++|+|+..|+++
T Consensus        79 ~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          79 AEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            99999999999999999984 5 999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=7e-15  Score=104.45  Aligned_cols=108  Identities=29%  Similarity=0.475  Sum_probs=93.2

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---------CCCccchhhhhccCCCe
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---------SPKYTRVAEIMTDENKL  144 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---------~~~~~~v~~im~~~~~~  144 (208)
                      ++++.+++++.++.+.|.+++...+||+  ++ ++++|+++..++++.+.....         .....++.++|..  ++
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   77 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVI--EG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR--PV   77 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEE--EC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC--Cc
Confidence            6789999999999999999999999999  55 999999999998865432211         1124578899987  79


Q ss_pred             EEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          145 ITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       145 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .++.+++++.+++..|.+.+.+.+||+|++ ++|+|+..|+++
T Consensus        78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~  120 (121)
T cd04633          78 ITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR  120 (121)
T ss_pred             eEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence            999999999999999999999999999888 999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.63  E-value=1.7e-14  Score=100.76  Aligned_cols=106  Identities=36%  Similarity=0.627  Sum_probs=92.7

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++++++++.++.+.|.+++...+||+  ++ ++++|+++.+||++... .... ...+++++|..  ++.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~~l~~~~~-~~~~-~~~~v~~~~~~--~~~~~~~~~~l   75 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVV--DD-GRPLGIVTERDILRLLA-SGPD-LQTPVGEVMSS--PLLTVPADTSL   75 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEeHHHHHHHHh-cCCC-CCcCHHHhcCC--CceEECCCCCH
Confidence            6789999999999999998889999999  55 89999999999877543 2221 46789999987  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+.+.+.+||+|+ + ++|+|+..|+++
T Consensus        76 ~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          76 YDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            99999999999999999987 5 999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=7.1e-15  Score=104.56  Aligned_cols=109  Identities=26%  Similarity=0.430  Sum_probs=93.3

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC---CC-----CCccchhhhhccCCCeE
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG---RS-----PKYTRVAEIMTDENKLI  145 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~---~~-----~~~~~v~~im~~~~~~~  145 (208)
                      +.++++++++.++.+.|.+.+.+++||+  |++++++|+++..||++......   ..     ....++.++|..  ++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   78 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGFTGLPVV--QKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PVY   78 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC--CCe
Confidence            7889999999999999998999999999  78899999999999876421110   00     135678899987  789


Q ss_pred             EEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          146 TLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       146 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      ++++++++.+++..|.+++.+.+||+++ + ++|++|..|+++
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          79 SVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             eECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            9999999999999999999999999987 4 999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.62  E-value=1.5e-14  Score=102.46  Aligned_cols=108  Identities=30%  Similarity=0.466  Sum_probs=92.8

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC---------CCccchhhhhccCCCe
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS---------PKYTRVAEIMTDENKL  144 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~---------~~~~~v~~im~~~~~~  144 (208)
                      +.++.++.++.++.+.|.+.+...+||+  ++ ++++|+++..+++.+.......         ....++.++|.+  ++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   77 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSIRRLPVV--DR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR--DP   77 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCcceeeEe--cC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC--CC
Confidence            7889999999999999999999999999  66 9999999999988754322110         013568899987  79


Q ss_pred             EEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          145 ITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       145 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++++++.+++..|.+.+.+.+||+++ + ++|+||..|+++
T Consensus        78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          78 ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999999987 5 999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.62  E-value=2e-14  Score=100.33  Aligned_cols=106  Identities=26%  Similarity=0.411  Sum_probs=91.8

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++++.++.+.|.+.+.+.+||+  ++ ++++|+++..||.+... .... ...++.++|..  ++.++.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~-~~~~-~~~~~~~~~~~--~~~~v~~~~~~   75 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGERHRGYPVV--DD-GRLVGIVTLADIRRVPA-EGRE-ATVLVGDVMTR--DPVTASPDETL   75 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcceEe--eC-CeEEEEEEHHHHHHHHh-cCcc-cccCHHHhccC--CCeEECCCCCH
Confidence            7889999999999999998889999999  66 99999999999876432 2211 12368888887  89999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||+++ + ++|+||..|+++
T Consensus        76 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          76 RDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            99999999999999999987 5 999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.62  E-value=7.6e-15  Score=102.59  Aligned_cols=100  Identities=27%  Similarity=0.447  Sum_probs=87.6

Q ss_pred             ecCCchHHHHHHHHHhcC-----CcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCC
Q 028491           77 CRSDDTVEDAVKNMAQHN-----IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDA  151 (208)
Q Consensus        77 v~~~~tl~~a~~~m~~~~-----~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  151 (208)
                      +.+++++.++.+.|.+++     +..+||+  |++++++|+|+.+++++.       ..+.+++++|.+  ++..+.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~--~~~~i~~~~   70 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVSLRDLLLA-------DPDTPVSDIMDT--DVISVSADD   70 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEE--CCCCCEEEEEEHHHHhcC-------CCcchHHHHhCC--CCeEEcCCC
Confidence            578999999999998776     4789999  778999999999997652       135679999987  799999999


Q ss_pred             CHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHH
Q 028491          152 NILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRA  187 (208)
Q Consensus       152 ~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~  187 (208)
                      ++.++++.|..++.+.+||+++ + ++|+||..|+++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          71 DQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             CHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9999999999999999999985 4 9999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.61  E-value=1.5e-14  Score=101.91  Aligned_cols=103  Identities=17%  Similarity=0.292  Sum_probs=88.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcC-
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPS-  149 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-  149 (208)
                      +.++.+++++.++.+.|.+++...+||+  |+   +++++|+++.+|++..   ..   ...+++++|..  ++.++.. 
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~~~~G~v~~~dl~~~---~~---~~~~v~~~~~~--~~~~~~~~   73 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGFSGIPVT--EDGKSGGKLLGIVTSRDIDFL---TD---SETPLSEVMTP--REVLVVAP   73 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCCCceEEe--eCCCcCCEEEEEEEhHHhhhh---hc---cCCCHHHhcCC--CceEEECC
Confidence            6789999999999999998899999999  65   6899999999997642   11   23569999987  6667766 


Q ss_pred             -CCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          150 -DANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       150 -~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                       ++++.++++.|.+++.+.+||+++ + ++|+||..|+++
T Consensus        74 ~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          74 TGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence             999999999999999999999986 4 999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.61  E-value=1.8e-14  Score=125.09  Aligned_cols=122  Identities=17%  Similarity=0.300  Sum_probs=105.0

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      .+...+++++|.++       +.++.+++++.++++.|.+++++.+||+  |++++++|+|+.+|+++.+..+.. ....
T Consensus       331 ~l~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~-~~~~  400 (454)
T TIGR01137       331 VLKNATVKDLHLPA-------PVTVHPTETVGDAIEILREYGFDQLPVV--TEAGKVLGSVTLRELLSALFAGKA-NPDD  400 (454)
T ss_pred             HhccCCHHHhCcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHhccCC-CcCC
Confidence            37889999999988       9999999999999999999999999999  778999999999998876554322 2356


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAV  188 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~  188 (208)
                      ++.++|.+  ++.++++++++.++++.|.+++  ..+|++++ ++|+||+.|+++.+
T Consensus       401 ~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       401 AVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CHHHhcCC--CCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHHHhh
Confidence            89999987  7889999999999999998864  35566667 99999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.60  E-value=1.1e-14  Score=126.11  Aligned_cols=119  Identities=23%  Similarity=0.415  Sum_probs=104.2

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      +...++.++|.++       ++++.+++|+.++++.|.+++.+.+||+  | +++++|+||.+||...       ....+
T Consensus        85 v~~VKv~eim~~~-------pvtv~p~~tI~eA~~lm~~~~~~~~vVv--D-~gklvGIVT~rDL~~~-------~~~~~  147 (475)
T TIGR01303        85 VAFVKSRDLVLDT-------PITLAPHDTVSDAMALIHKRAHGAAVVI--L-EDRPVGLVTDSDLLGV-------DRFTQ  147 (475)
T ss_pred             HhhcchhhccccC-------CeEECCCCCHHHHHHHHHhcCCeEEEEE--E-CCEEEEEEEHHHhhcC-------CCCCC
Confidence            4567778888888       9999999999999999999999999999  4 4689999999997421       23467


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~  191 (208)
                      ++++|+.  +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..||++.....
T Consensus       148 V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       148 VRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             HHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            9999998  8999999999999999999999999999985 4 99999999999977654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.60  E-value=2.2e-14  Score=99.87  Aligned_cols=106  Identities=25%  Similarity=0.377  Sum_probs=89.0

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      ++.++.+++++.++.+.|.+++.+.+||+  ++ ++++|+++..|+.+.+.... .....++.++|.+  ++.+++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~--~~~~v~~~~~   75 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVV--DD-GRVVGSIDESDLLDALIEGK-AKFSLPVREVMGE--PLPTVDPDAP   75 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEe--eC-CeeEEEEeHHHHHHHHhccc-cccCcCHHHHhcC--CCceeCCCCc
Confidence            37889999999999999999999999999  66 89999999999887654332 2224679999987  7899999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      +.++++.|.+ .. .+||+++ + ++|+||.+|+++
T Consensus        76 l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          76 IEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence            9999999988 33 4677766 4 999999999976

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK11573 hypothetical protein; Provisional

Probab=99.60  E-value=1e-14  Score=124.73  Aligned_cols=134  Identities=11%  Similarity=0.275  Sum_probs=112.5

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      .+.+.+|+++|+|..+     +++++.++++.++.+.+.+++++++||++ ++.++++|++..+|++..+.. +......
T Consensus       183 ~l~~~~v~eiMtPr~~-----i~~l~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IiGiv~~kDll~~~~~-~~~~~~~  255 (413)
T PRK11573        183 DLEKVTVDDIMVPRNE-----IVGIDINDDWKSILRQLTHSPHGRIVLYR-DSLDDAISMLRVREAYRLMTE-KKEFTKE  255 (413)
T ss_pred             ccCCCChhhcCCccce-----EEEEECCCCHHHHHHHHHhCCCceEEEEc-CCCCceEEEEEHHHHHHHhhc-cCcCCHH
Confidence            3778999999999966     99999999999999999999999999995 445889999999999864332 2111123


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGEL  196 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~  196 (208)
                      .+.+++.   ++..|++++++.++++.|++++.+...|+|+.  ..|+||..|+++.+.++..++.
T Consensus       256 ~l~~~~r---~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~  318 (413)
T PRK11573        256 NMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSM  318 (413)
T ss_pred             HHHhhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCccc
Confidence            3445654   48899999999999999999999999999985  9999999999999998876553

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.59  E-value=3.4e-14  Score=98.65  Aligned_cols=101  Identities=30%  Similarity=0.510  Sum_probs=89.7

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +++++.+.++.++.+.|.+.+...+||+  ++ ++++|+++..||+..       ....+++++|..  ++.++.+++++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~-~~~~g~v~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~l   71 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGHDGFPVV--DN-GKVVGIVSARDLLGK-------DPDETVEEIMSK--DLVVAVPEMDI   71 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhcc-------CccccHHHhCCC--CCeEECCCCCH
Confidence            7889999999999999988888899999  55 999999999997642       234579999987  78999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~  186 (208)
                      .++++.|.+++.+++||++++  ++|+|+..|+++
T Consensus        72 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          72 MDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            999999999999999999864  999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.59  E-value=2.4e-14  Score=99.76  Aligned_cols=103  Identities=26%  Similarity=0.440  Sum_probs=89.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcC-CCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPS-DAN  152 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~  152 (208)
                      +.++.+++++.++.+.|.+++...+||+  +++++++|+++..+++..   .   ....++.++|..  ++..+.+ +++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~---~---~~~~~v~~~~~~--~~~~~~~~~~~   73 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVV--DDDGKLVGIVTNRDLRFE---T---DLDKPVSEVMTP--ENLLTTVEGTS   73 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCEEEEEEEhhHeeec---c---cCCCCHHHhccc--CceEEecCCCC
Confidence            7889999999999999999999999999  778999999999997542   1   235689999976  5666666 999


Q ss_pred             HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      +.++++.|.+.+.+.+||+++ + ++|+||..|+++
T Consensus        74 l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          74 LEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            999999999999999999986 5 999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=4.7e-14  Score=97.97  Aligned_cols=102  Identities=28%  Similarity=0.531  Sum_probs=90.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.+++++.++.+.|.+.+.+.+||+  +++++++|+++.++++..       ....++.++|..  ++.++.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~v~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~l   71 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVV--KKSGELVGIITRKDLLRN-------PEEEQLALLMTR--DPPTVSPDDDV   71 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhc-------cccchHHHHhcC--CCceECCCCCH
Confidence            7889999999999999998889999999  677999999999998642       123568888877  78999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      .+++..|..++.+.+||++++ ++|+||..|+++
T Consensus        72 ~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~~  105 (106)
T cd04638          72 KEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence            999999999999999999988 999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.59  E-value=2.9e-14  Score=99.41  Aligned_cols=98  Identities=18%  Similarity=0.287  Sum_probs=87.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSD  150 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~  150 (208)
                      ...+.+++++.++.+.+.+.+...+||+  ++   +++++|+|+.+|+.+....            +|..  ++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~~~G~v~~~dl~~~~~~------------~m~~--~~~~v~~~   67 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVV--DSTEESPRLVGYILRSQLVVALKN------------YIDP--SPFTVSPR   67 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceE--cCCCCCCEEEEEEeHHHHHHHHHH------------hccC--CCceECCC
Confidence            6788999999999999999888899999  66   6899999999998765321            7776  78899999


Q ss_pred             CCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHH
Q 028491          151 ANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRA  187 (208)
Q Consensus       151 ~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~  187 (208)
                      +++.++++.|.+++.+++||++++ ++|+||+.|++++
T Consensus        68 ~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          68 TSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLKA  105 (105)
T ss_pred             CcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhhcC
Confidence            999999999999999999999888 9999999999763

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.59  E-value=4.8e-14  Score=100.02  Aligned_cols=109  Identities=28%  Similarity=0.391  Sum_probs=93.8

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC--C------CCCccchhhhhccCCCeE
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG--R------SPKYTRVAEIMTDENKLI  145 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~--~------~~~~~~v~~im~~~~~~~  145 (208)
                      +.++++++++.+|.+.|.+.+.+++||+  |++++++|+++..+|.+......  .      .....++.++|..  ++.
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~   78 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKIRHLPVV--DEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK--DVI   78 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC--CCe
Confidence            7889999999999999998999999999  77899999999999876432110  0      1234679999987  799


Q ss_pred             EEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          146 TLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       146 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      ++++++++.++++.|.+++.+.+||++++ ++|+++..|+++
T Consensus        79 ~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~  120 (121)
T cd04584          79 TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR  120 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence            99999999999999999999999999888 999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.58  E-value=3.7e-14  Score=123.71  Aligned_cols=109  Identities=20%  Similarity=0.313  Sum_probs=96.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSD  150 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~  150 (208)
                      ++++++++|+.++.+.|.+++++.+||+  |+   +++++|+||.+|+... .     ..+.+++++|++.+++++++++
T Consensus       110 pvtV~pd~tV~dA~~lm~~~~~~~lpVv--D~~~~~GklvGIVT~~DL~~v-~-----~~~~~V~eIMt~~~~lvtv~~~  181 (505)
T PLN02274        110 PVVKSPSSTISSLDELKASRGFSSVCVT--ETGTMGSKLLGYVTKRDWDFV-N-----DRETKLSEVMTSDDDLVTAPAG  181 (505)
T ss_pred             CeeeCCCCcHHHHHHHHHhcCCceEEEE--eCCCcCCeEEEEEEHHHHhhc-c-----ccCCcHHHHhccCCCcEEECCC
Confidence            8999999999999999999999999999  55   4899999999997532 1     2467899999873238899999


Q ss_pred             CCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          151 ANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       151 ~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                      +++.+|++.|.+++.+.+||+|++  ++|+||+.|+++.+..
T Consensus       182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            999999999999999999999865  9999999999999865

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=5.4e-14  Score=100.07  Aligned_cols=108  Identities=26%  Similarity=0.477  Sum_probs=92.0

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC---CC------CCccchhhhhccCCCe
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG---RS------PKYTRVAEIMTDENKL  144 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~---~~------~~~~~v~~im~~~~~~  144 (208)
                      +.++++++++.++.+.|.+.+++.+||+  ++ ++++|+++..++++.+....   ..      ....++.++|..  ++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   77 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKHKFHHLLVV--ED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR--DP   77 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhCCCCEEEEE--eC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC--CC
Confidence            7889999999999999999999999999  55 89999999999877543210   00      013568899987  89


Q ss_pred             EEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491          145 ITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       145 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~  186 (208)
                      +++.+++++.++++.|.+++...+||+++ + ++|+++..|+++
T Consensus        78 ~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          78 ITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             eeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            99999999999999999999999999987 4 999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=7.9e-14  Score=102.50  Aligned_cols=108  Identities=31%  Similarity=0.567  Sum_probs=93.1

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC--C-----------------------
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR--S-----------------------  128 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~--~-----------------------  128 (208)
                      ++++++++++.++.+.|.+++++.+||+  ++ ++++|+++..|+++.+.....  .                       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           3 PITCNADDTISDAARLLRENKISGAPVL--DG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             cEEecCCCCHHHHHHHHHHcCCCcceEe--EC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            7889999999999999999999999999  56 899999999998775533220  0                       


Q ss_pred             ------CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          129 ------PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       129 ------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                            ....++.++|..  ++.++++++++.+++..|.+.+.+.+||++++ ++|+|+..|+++
T Consensus        80 ~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence                  024568888887  79999999999999999999999999999888 999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.57  E-value=2.6e-14  Score=123.60  Aligned_cols=115  Identities=25%  Similarity=0.476  Sum_probs=100.6

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC---ceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ---QHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~---~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      +.++.|.++       ++++++++|+.++.+.|.+++++.+||+  |++   ++++|+|+.+||+..   .   ....++
T Consensus        81 ~~~~~~~~~-------~vtl~~~~tv~eal~~m~~~~~s~lpVv--d~~~~~~~lvGIVt~rDL~~~---~---~~~~~V  145 (450)
T TIGR01302        81 RAENGIISD-------PVTISPETTVADVLELMERKGISGIPVV--EDGDMTGKLVGIITKRDIRFV---K---DKGKPV  145 (450)
T ss_pred             cccCceecC-------ceEeCCCCCHHHHHHHHHHcCCCEEEEE--eCCCCCCeEEEEEEHHHHhhh---h---cCCCCH
Confidence            345566666       8999999999999999999999999999  566   799999999998642   1   135689


Q ss_pred             hhhhc-cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          135 AEIMT-DENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       135 ~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      +++|+ .  +++++++++++.++++.|.+++.+.+||+|++  ++|+||..|+++.+.
T Consensus       146 ~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       146 SEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             HHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            99998 4  79999999999999999999999999999976  999999999999874

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.57  E-value=4.6e-14  Score=114.37  Aligned_cols=113  Identities=24%  Similarity=0.436  Sum_probs=97.8

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      -.+++++|.++      ++.++.+++++.++++.|.+.+.+++||+  |++++++|+|+..|+++.+. .+. ....+++
T Consensus       154 ~~~v~~im~~~------~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv--d~~g~~~Givt~~dl~~~~~-~~~-~~~~~v~  223 (268)
T TIGR00393       154 LVKVKDLMQTT------DLPLIAPTTSFKDALLEMSEKRLGSAIVC--DENNQLVGVFTDGDLRRALL-GGG-SLKSEVR  223 (268)
T ss_pred             hhhHHHHhCCC------CCCcCCCCCcHHHHHHHHhhcCCcEEEEE--eCCCCEEEEEEcHHHHHHHh-cCC-cccCcHH
Confidence            47899999765      15779999999999999999999999999  77899999999999887543 222 2467899


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEE
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMIS  180 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit  180 (208)
                      ++|.+  ++.++.+++++.+|++.|.+++.+++||+|++  ++|+|+
T Consensus       224 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       224 DFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             HhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            99988  78999999999999999999999999999864  999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.56  E-value=3.9e-14  Score=121.19  Aligned_cols=131  Identities=21%  Similarity=0.411  Sum_probs=118.7

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHh-----cCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQ-----HNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR  127 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-----~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~  127 (208)
                      .+...+++.+|++.       ++++.++.|+.+++..+++     ..+.+++|+  |++++++|+++.++++.+      
T Consensus       128 ~y~e~taG~~Mt~e-------~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVv--D~~~~L~Gvvsl~~Ll~a------  192 (451)
T COG2239         128 SYPEDTAGRIMTTE-------FVTLPEDVTVDEALDRIRERAEDAETIYYLYVV--DEKGKLLGVVSLRDLLTA------  192 (451)
T ss_pred             CCChhhhhccceee-------eEEeccCcCHHHHHHHHHHhcccccccceEEEE--CCccceEEEeeHHHHhcC------
Confidence            46677899999999       9999999999999999985     346799999  899999999999998863      


Q ss_pred             CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHH
Q 028491          128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNE  201 (208)
Q Consensus       128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~  201 (208)
                       .++.+++++|.+  .+.++.++++.+++.++|.+++.-.+||+|++  ++|+||..|++..+.++..+...++.-
T Consensus       193 -~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G  265 (451)
T COG2239         193 -EPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAG  265 (451)
T ss_pred             -CcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence             468899999998  79999999999999999999999999999987  999999999999999988887777665

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.56  E-value=6.3e-14  Score=122.38  Aligned_cols=115  Identities=27%  Similarity=0.465  Sum_probs=102.8

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhh
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI  137 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~i  137 (208)
                      .++++|.++       ++++++++|+.++.+.|.+++++.+||+  |++++++|+|+.+||...   .   ....++.++
T Consensus        88 ~~~dim~~~-------~v~i~~~~tv~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~DL~~~---~---~~~~~V~di  152 (486)
T PRK05567         88 RSESGVVTD-------PVTVTPDTTLAEALALMARYGISGVPVV--DENGKLVGIITNRDVRFE---T---DLSQPVSEV  152 (486)
T ss_pred             hhhhcccCC-------CeEeCCCCCHHHHHHHHHHhCCCEEEEE--ccCCEEEEEEEHHHhhhc---c---cCCCcHHHH
Confidence            567788877       9999999999999999999999999999  788999999999997542   1   235689999


Q ss_pred             hc-cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          138 MT-DENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       138 m~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      |. .  +++++++++++.++++.|.+++++.+||+|++  ++|+||..|+++.+.
T Consensus       153 m~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        153 MTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             cCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence            98 4  79999999999999999999999999999876  999999999998874

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.55  E-value=4.9e-14  Score=122.87  Aligned_cols=116  Identities=19%  Similarity=0.290  Sum_probs=99.5

Q ss_pred             HHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        59 v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      .++.|..+       ++++++++|+.++.++|.+++++.+||+  ++   +++++|+|+.+|+...   .   ....+++
T Consensus        98 ~e~g~i~d-------pvtv~pd~tv~eA~~lm~~~~~s~vpVv--d~~~~~gkLvGIVt~~DL~~~---~---~~~~~V~  162 (495)
T PTZ00314         98 FENGFIMD-------PYVLSPNHTVADVLEIKEKKGFSSILIT--VDGKVGGKLLGIVTSRDIDFV---K---DKSTPVS  162 (495)
T ss_pred             cccccccC-------CeecCCCCCHHHHHHHHHHcCCcEEEEE--eCCccCCeEEEEEEHHHHhhc---c---cCCCCHH
Confidence            34455555       8999999999999999999999999999  55   3799999999997531   1   2357899


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      ++|++.++++++++++++.+|+++|.+++.+.+||+|++  ++|+||++|+++...
T Consensus       163 diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        163 EVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             HhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            999864468999999999999999999999999999876  999999999998864

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.54  E-value=2.3e-13  Score=95.87  Aligned_cols=105  Identities=31%  Similarity=0.624  Sum_probs=92.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      ++++.++.++.+|...|.++++..+||+   +.++++|++|.+|+++++......  ..++.++|..  ++.++.++.++
T Consensus         9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~---~~~~l~Giit~~di~~~~~~~~~~--~~~v~~v~~~--~~~~~~~~~~~   81 (117)
T COG0517           9 VITVKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRALAAGGKR--LLPVKEVMTK--PVVTVDPDTPL   81 (117)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe---eCCEEEEEEEHHHHHHHHhccCCc--cccHHHhccC--CcEEECCCCCH
Confidence            8999999999999999999999999999   344899999999998876544321  2279999998  79999999999


Q ss_pred             HHHHHHHHh-cCCCEeeeecCc---eeEEEEHHHHH
Q 028491          154 LHAMQLMTD-KHIRHVPVIDGR---IVGMISIVDVV  185 (208)
Q Consensus       154 ~~a~~~~~~-~~~~~lpVvd~~---~vGiit~~dll  185 (208)
                      .+++..|.+ ++++.+||++++   ++|++|..|++
T Consensus        82 ~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          82 EEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            999999999 799999999863   99999999973

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=4.9e-13  Score=92.63  Aligned_cols=108  Identities=33%  Similarity=0.605  Sum_probs=92.9

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      +.++.++.++.++.+.|.+.+...+||+  +++++++|+++..|++..+.... ......+.++|..  ++.++.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~   77 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVV--DDDGRLVGIVTERDLLRALAEGG-LDPLVTVGDVMTR--DVVTVSPDTSL   77 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEE--CCCCCEEEEEeHHHHHHHHHhcc-CCccccHHHHhcC--CceecCCCcCH
Confidence            6789999999999999999889999999  77799999999999887654332 1122237788887  79999999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR  186 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~  186 (208)
                      .+++..|.+.+.+.+||++++  ++|+++..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          78 EEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            999999999999999999884  999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.51  E-value=2.3e-13  Score=96.32  Aligned_cols=108  Identities=15%  Similarity=0.243  Sum_probs=87.9

Q ss_pred             eEEecCCchHHHHHHHHHhcC-CcEEEEEecCCCceEEEeechHHHHHHHHhcC--CCCCccchhhhhccCCCeEEEcCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHN-IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG--RSPKYTRVAEIMTDENKLITLPSD  150 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~-~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~--~~~~~~~v~~im~~~~~~~~v~~~  150 (208)
                      +.++++++++.++.+.|...+ .+.+||+  ++ ++++|+++..|+++++....  ......++.++|.+  ++.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~   77 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDLSALAVV--DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLIVEAD   77 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCccEEEEE--EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEEecCC
Confidence            678899999999999998876 8899999  67 99999999999876432110  00134679999987  89999999


Q ss_pred             CCHHHHHHHHHhcCCC---EeeeecC-c-eeEEEEHHHHHH
Q 028491          151 ANILHAMQLMTDKHIR---HVPVIDG-R-IVGMISIVDVVR  186 (208)
Q Consensus       151 ~~l~~a~~~~~~~~~~---~lpVvd~-~-~vGiit~~dll~  186 (208)
                      +++.+++..|.+++..   ..||+++ + ++|+||..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          78 TPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999999998864   3456654 5 999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.51  E-value=1.3e-13  Score=118.75  Aligned_cols=133  Identities=17%  Similarity=0.349  Sum_probs=113.0

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      .+.+.+++++|+|..+     +.+++.+.++.++.+.+.+++++++||++ +..+.++|++..+|++........   ..
T Consensus       202 ~l~~~~v~eiMtPR~~-----i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~~~~~---~~  272 (429)
T COG1253         202 DLDDRTVREIMTPRTD-----IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALLDGQS---DL  272 (429)
T ss_pred             ccCCcEeeeEeeeccc-----EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHhcCcc---cc
Confidence            4778999999999855     99999999999999999999999999995 477899999999999987654431   11


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELK  197 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~  197 (208)
                      .....+.   +++.+++.+++.++++.|++.+.|...|+|+.  +.|+||..|+++.+.++..++..
T Consensus       273 ~~~~~~~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d  336 (429)
T COG1253         273 DLRVLVR---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHD  336 (429)
T ss_pred             chhhccc---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCccc
Confidence            1222222   58899999999999999999999999999985  99999999999999998775554

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.49  E-value=5e-13  Score=97.30  Aligned_cols=99  Identities=21%  Similarity=0.335  Sum_probs=80.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCC----------ccchhhhhcc---
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK----------YTRVAEIMTD---  140 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~----------~~~v~~im~~---  140 (208)
                      +.++.+++++.+|++.|.+++.+.+||+  |++++++|+++..|+++++........          ...+.++|.+   
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~Vv--D~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVV--DSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            7889999999999999999999999999  788999999999999887654332110          0124456531   


Q ss_pred             ----CCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc
Q 028491          141 ----ENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR  174 (208)
Q Consensus       141 ----~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~  174 (208)
                          .++++++.+++++.+|++.|.+++++++||+|++
T Consensus        81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence                1268899999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.43  E-value=2.9e-12  Score=113.70  Aligned_cols=122  Identities=24%  Similarity=0.357  Sum_probs=105.3

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---------
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---------  127 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---------  127 (208)
                      .+|+++|.++       +.++++++++.+|++.|.++++..+||+  |++|+++|+|+..|+.+.+.....         
T Consensus        68 ~~V~dim~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~  138 (546)
T PRK14869         68 PQVRDLEIDK-------PVTVSPDTSLKEAWNLMDENNVKTLPVV--DEEGKLLGLVSLSDLARAYMDILDPEILSKSPT  138 (546)
T ss_pred             CcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCC
Confidence            6899999988       9999999999999999999999999999  788999999999998875543110         


Q ss_pred             -------------------------------------------------------------------------C------
Q 028491          128 -------------------------------------------------------------------------S------  128 (208)
Q Consensus       128 -------------------------------------------------------------------------~------  128 (208)
                                                                                               .      
T Consensus       139 t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~  218 (546)
T PRK14869        139 SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVL  218 (546)
T ss_pred             CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHH
Confidence                                                                                     0      


Q ss_pred             ------------------------CCccchhhhhc-cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEH
Q 028491          129 ------------------------PKYTRVAEIMT-DENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISI  181 (208)
Q Consensus       129 ------------------------~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~  181 (208)
                                              ....+|+++|+ +  ++.++++++++.++.+.|.+++.+.+||+|+ + ++|+||.
T Consensus       219 ~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~  296 (546)
T PRK14869        219 ELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISR  296 (546)
T ss_pred             HHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEH
Confidence                                    01346777888 6  7999999999999999999999999999996 4 9999999


Q ss_pred             HHHHHHHH
Q 028491          182 VDVVRAVV  189 (208)
Q Consensus       182 ~dll~~~~  189 (208)
                      .|+++...
T Consensus       297 ~dl~~~~~  304 (546)
T PRK14869        297 YHLLSPVR  304 (546)
T ss_pred             HHhhcccc
Confidence            99998654

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.38  E-value=1.5e-12  Score=106.72  Aligned_cols=132  Identities=17%  Similarity=0.332  Sum_probs=112.2

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      ++.++|+|+|.+..+     +..+..+++.+++.+.+....++++|+.+ |+-++++|++..+|+++++..... .....
T Consensus       197 Le~~tV~DIMvpR~~-----i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnIiGvlh~r~llr~l~e~~~-~~k~d  269 (423)
T COG4536         197 LENLTVSDIMVPRNE-----IIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNIIGVLHVRDLLRLLNEKNE-FTKED  269 (423)
T ss_pred             cccceeeeeeccccc-----eeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHhhhhhhHHHHHHHhhccCc-ccHhH
Confidence            778999999999866     89999999999999999999999999997 455679999999999886544331 22333


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~  195 (208)
                      +..+..   +|+++++++++.+-+..|++.+-+...|+|+.  +.|+||.+|+++.+.+...++
T Consensus       270 ~~~~a~---epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde  330 (423)
T COG4536         270 ILRAAD---EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDE  330 (423)
T ss_pred             HHHHhc---CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccccc
Confidence            444434   59999999999999999999999999999986  999999999999999887743

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.26  E-value=4e-11  Score=74.05  Aligned_cols=56  Identities=25%  Similarity=0.506  Sum_probs=52.7

Q ss_pred             HHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        59 v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      |+++|+++       ++++++++++.++.+.|.+++++++||+  |++++++|+|+.+||+++++
T Consensus         1 v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPP-------PITVSPDDSLEEALEIMRKNGISRLPVV--DEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSS-------SEEEETTSBHHHHHHHHHHHTSSEEEEE--STTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCC-------CEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHhhhh
Confidence            57899998       9999999999999999999999999999  89999999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.3e-11  Score=95.53  Aligned_cols=130  Identities=14%  Similarity=0.373  Sum_probs=112.2

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      .....|+|+|.|..+     .+++..+.++.+++..+.+..++++||+. ++.+.+.|++-.+||+..+....   ..-.
T Consensus        64 iadl~vrDiMIPRSQ-----M~~l~~~~~l~~~l~~iiesaHSRfPVi~-edkD~v~GIL~AKDLL~~~~~~~---~~F~  134 (293)
T COG4535          64 IADLRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVIS-EDKDHVEGILLAKDLLPFMRSDA---EPFD  134 (293)
T ss_pred             HHHhhHhhhcccHHH-----heeccccCCHHHHHHHHHHhccccCCccc-CCchhhhhhhhHHHHHHHhcCCc---cccc
Confidence            457899999999855     89999999999999999999999999996 45678999999999998643322   2245


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~  195 (208)
                      +.++..+   ...|+++-.+...++-|+..+.|...|+|+-  +-|+||..|+++.+.+....+
T Consensus       135 i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE  195 (293)
T COG4535         135 IKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDE  195 (293)
T ss_pred             HHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccc
Confidence            7787764   8899999999999999999999999999985  999999999999999877654

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.23  E-value=1.2e-10  Score=98.52  Aligned_cols=116  Identities=18%  Similarity=0.271  Sum_probs=98.0

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc-hhhhhcc----CCCeEEEc
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR-VAEIMTD----ENKLITLP  148 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~-v~~im~~----~~~~~~v~  148 (208)
                      +..+..++++.+|++.|...+++.+||+  +..|..+|.++..|................ +++....    ...++++.
T Consensus       239 i~~i~~~~~v~~al~~m~~~~is~lpvV--~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~  316 (381)
T KOG1764|consen  239 IASISEDTPVIEALKIMSERRISALPVV--DENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR  316 (381)
T ss_pred             heeecCCCcHHHHHHHHHhcCcCcceEE--cCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence            8889999999999999999999999999  788888999999997765544444433444 5554332    12579999


Q ss_pred             CCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          149 SDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       149 ~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      ++.++.+++..|..+++|+++|+|++  ++|+||..|++..+...
T Consensus       317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence            99999999999999999999999985  99999999999999764

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.18  E-value=1.4e-10  Score=71.58  Aligned_cols=54  Identities=35%  Similarity=0.626  Sum_probs=50.7

Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      |+++|++  +++++++++++.++++.|.+++++++||+|++  ++|+||.+|+++++.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            5789998  89999999999999999999999999999766  999999999999885

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=8.3e-09  Score=88.11  Aligned_cols=120  Identities=14%  Similarity=0.171  Sum_probs=95.4

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      .++.++|.+....    .+...++.+..+++..|...+.+.++|+  |++++++|+++..++.+.. ..     ..++.+
T Consensus       274 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~-~~-----~~~~~~  341 (400)
T PRK10070        274 FSAKDIARRTPNG----LIRKTPGFGPRSALKLLQDEDREYGYVI--ERGNKFVGAVSIDSLKTAL-TQ-----QQGLDA  341 (400)
T ss_pred             cchhhhhhcCccc----ccccCCCCCHHHHHHHHHhcCCceEEEE--cCCCcEEEEEeHHHHHhhh-hc-----CCchhh
Confidence            4556666543110    1234467789999999999999999999  8999999999999976532 11     235777


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      .+..  ...++++++++.+++..+..+... +||+|++  ++|+|+..++++.+...
T Consensus       342 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        342 ALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             hhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            7776  788999999999999999997776 9999965  99999999999998653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.01  E-value=1.2e-08  Score=86.09  Aligned_cols=107  Identities=19%  Similarity=0.330  Sum_probs=91.3

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI  153 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  153 (208)
                      .....++.+..++.+.|...+...+.|+  ++++++.|.++..++.... .     ....+.+.+..  .+.++++++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~-~-----~~~~~~~~~~~--~~~~~~~~~~~  321 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVV--DRQNKLVGVVDVESIKQAR-K-----KAQGLQDVLID--DIYTVDAGTLL  321 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEE--cCCCCEEEEEeHHHHHHHh-h-----cCCchhhhhcc--CCceECCCCcH
Confidence            3456678889999999999999999999  7899999999999976532 1     12457888877  78899999999


Q ss_pred             HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      .+++..|.+++.. +||+|++  ++|+||..++++.+...
T Consensus       322 ~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       322 RETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             HHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence            9999999999998 9999965  99999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.96  E-value=2.9e-09  Score=77.83  Aligned_cols=90  Identities=27%  Similarity=0.421  Sum_probs=72.9

Q ss_pred             chHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhh
Q 028491          114 TERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       114 t~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~  192 (208)
                      +.+.+++++.....  ....+..+|+.  |++++++++++.+++++|..++++.+||++++ ++|-||-.++.+.+.+..
T Consensus        49 t~k~Il~aL~e~e~--~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~  124 (187)
T COG3620          49 TVKRILEALEEAEK--TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGM  124 (187)
T ss_pred             HHHHHHHHHHHhhc--ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccc
Confidence            44566665543332  45678999999  99999999999999999999999999999999 999999999999998763


Q ss_pred             -HHHHHHHHHhhhcCC
Q 028491          193 -KGELKRLNEFIRGEY  207 (208)
Q Consensus       193 -~~~~~~~~~~~~~~y  207 (208)
                       .-...+..++|..+|
T Consensus       125 e~i~~~~vr~vM~e~f  140 (187)
T COG3620         125 ESIRSLRVREVMGEPF  140 (187)
T ss_pred             cchhhhhHHHHhcCCC
Confidence             334556777777654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.87  E-value=5.5e-09  Score=86.85  Aligned_cols=108  Identities=20%  Similarity=0.359  Sum_probs=93.6

Q ss_pred             CeEEecCCchHHHHHHHHHhcCCcEEEEEecCC-CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCC
Q 028491           73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDA  151 (208)
Q Consensus        73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~-~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  151 (208)
                      +++.++|+.|+.++.+....+++..+||.+++. ..+++|+||.+|+ ..+  +   .....++++|++  ++++.+.+.
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~--~---~~~~~~~~vmt~--~~~~~~~gi  188 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL--E---DNSLLVSDVMTK--NPVTGAQGI  188 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh--h---cccchhhhhccc--ccccccccc
Confidence            378899999999999999999999999994211 3589999999995 444  1   346889999999  679999999


Q ss_pred             CHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHH
Q 028491          152 NILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAV  188 (208)
Q Consensus       152 ~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~  188 (208)
                      ++.++-+++.+++-..+||+|++  ++-+|+++||.+..
T Consensus       189 ~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  189 TLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             cHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            99999999999999999999987  99999999998764

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.80  E-value=1.1e-08  Score=88.94  Aligned_cols=115  Identities=10%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++|++.       +.++.+++++.+|++.|.+++...+||+  |++|+++|+||.+|+++.+..+       ..+
T Consensus       194 ~~~v~~im~~~-------~~~v~~~~~~~eal~~m~~~~~~~lpVV--D~~g~lvGiIt~~Dil~~l~~~-------~~e  257 (449)
T TIGR00400       194 EEILSSIMRSS-------VFSIVGVNDQEEVARLIQKYDFLAVPVV--DNEGRLVGIVTVDDIIDVIQSE-------ATE  257 (449)
T ss_pred             CCcHHHHhCCC-------CeeECCCCCHHHHHHHHHHcCCCEEeEE--cCCCeEEEEEEHHHHHHHHHhh-------hHH
Confidence            45799999988       8899999999999999999999999999  8889999999999999875432       347


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCceeEEEEHHHHHHHHHHh
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~vGiit~~dll~~~~~~  191 (208)
                      ++|..  ...+..+++++.+++..|.+++..+++|.  -+.|+++ ..++..+.+.
T Consensus       258 d~~~~--~gv~~~~~~~l~~~~~~~~~~R~~wL~v~--~~~~~~t-~~ii~~f~~~  308 (449)
T TIGR00400       258 DFYMI--AAVKPLDDSYFDTSILVMAKNRIIWLLVL--LVSSTFT-ATIISNYEDL  308 (449)
T ss_pred             HHHHh--cCCCCCcchhhhchHHHHHHhccchHHHH--HHHHHHH-HHHHHHHHHH
Confidence            88876  45555567788999999999999998875  2667776 6666665443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.69  E-value=3.3e-08  Score=77.70  Aligned_cols=73  Identities=30%  Similarity=0.553  Sum_probs=63.3

Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQKGELKRLNEFIRG  205 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~~  205 (208)
                      .+..++.++|++  +++++.+++++.+|..+|.+++++..||+|++ ++|++|.+|+.+++.+-  ....+++++|+.
T Consensus       169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g--~~~~kV~~~M~k  242 (294)
T COG2524         169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG--NLDAKVSDYMRK  242 (294)
T ss_pred             cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC--CccccHHHHhcc
Confidence            457889999999  99999999999999999999999999999999 99999999999999863  233455555553

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.67  E-value=1.4e-08  Score=90.32  Aligned_cols=121  Identities=18%  Similarity=0.295  Sum_probs=93.9

Q ss_pred             cccHHHhhc-ccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh-----cC---
Q 028491           56 NISVAEVLM-TKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG-----QG---  126 (208)
Q Consensus        56 ~~~v~~~m~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~-----~~---  126 (208)
                      ..+|+++|+ ++       +.++++++++.++.+.|.++++..+||+  |++|+++|+|+..|+++....     +.   
T Consensus       245 ~~~V~~iM~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~PVv--d~~g~lvGiit~~dl~~~~~~~~iLVD~~e~  315 (546)
T PRK14869        245 SIPVSYIMTTED-------LVTFSKDDYLEDVKEVMLKSRYRSYPVV--DEDGKVVGVISRYHLLSPVRKKVILVDHNEK  315 (546)
T ss_pred             CCCHHHhccCCC-------cEEECCCCcHHHHHHHHHhcCCCceEEE--cCCCCEEEEEEHHHhhccccCceEEEcCccc
Confidence            678999999 77       8999999999999999999999999999  889999999999998864211     00   


Q ss_pred             -CC---C---------CccchhhhhccCCCeEEE---cCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHH
Q 028491          127 -RS---P---------KYTRVAEIMTDENKLITL---PSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRA  187 (208)
Q Consensus       127 -~~---~---------~~~~v~~im~~~~~~~~v---~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~  187 (208)
                       ..   .         ...+++++++.  +++.+   +...+..-+.++|.+.++...|++.+. +.|+++.++.++.
T Consensus       316 ~q~~~~~~~~~i~~iiDHH~~~~~~~~--~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        316 SQAVEGIEEAEILEIIDHHRLGDIQTS--NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGLLLAAILSDTLLFKS  391 (546)
T ss_pred             cccccchhhceEEEEecCCccCCCCCC--CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCccC
Confidence             00   0         01134556655  44333   446667789999999999888888777 9999999988875

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.64  E-value=1.2e-07  Score=82.72  Aligned_cols=126  Identities=20%  Similarity=0.342  Sum_probs=100.7

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC---ceEEEeechHHHHHHHHhcC---
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ---QHIAGIFTERDYLRKIVGQG---  126 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~---~~~iG~vt~~dl~~~~~~~~---  126 (208)
                      .++.+.++++|+++       ++++..-..+...++.++.+.+..+||++..+.   +++.|+|-+..|+.-+ .+.   
T Consensus       578 ~mr~L~a~ev~~~p-------vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL-~~~~f~  649 (762)
T KOG0474|consen  578 YMRNLTAGEVMSKP-------VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL-KKRVFV  649 (762)
T ss_pred             HhhhhhHhhhccCC-------eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH-Hhhhhh
Confidence            36688999999998       999999999999999999999999999942112   5789999999987533 211   


Q ss_pred             ---CCC----------------C----------------ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeee
Q 028491          127 ---RSP----------------K----------------YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI  171 (208)
Q Consensus       127 ---~~~----------------~----------------~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVv  171 (208)
                         ...                .                ...+..+|.+  .|+++.+++++..++.+|++-+.+++.|+
T Consensus       650 ~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv  727 (762)
T KOG0474|consen  650 EESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVV  727 (762)
T ss_pred             ccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEe
Confidence               000                0                1123334555  79999999999999999999999999999


Q ss_pred             cCc--eeEEEEHHHHHHHH
Q 028491          172 DGR--IVGMISIVDVVRAV  188 (208)
Q Consensus       172 d~~--~vGiit~~dll~~~  188 (208)
                      +..  ++|++|++|+...-
T Consensus       728 ~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  728 PKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             cCCCceeEEEehhhhhhHH
Confidence            876  99999999998654

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.61  E-value=5.3e-08  Score=78.08  Aligned_cols=60  Identities=27%  Similarity=0.520  Sum_probs=55.2

Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                      .....+.++|++  +++++++++++.+|.++|.+|+++.+||+|++  ++|+||++|+++....
T Consensus       242 ~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~  303 (382)
T COG3448         242 MGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP  303 (382)
T ss_pred             hccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc
Confidence            346789999999  99999999999999999999999999999998  9999999999995544

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.59  E-value=6.3e-07  Score=78.38  Aligned_cols=113  Identities=17%  Similarity=0.294  Sum_probs=93.5

Q ss_pred             eEEecC-CchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC----------------------CCC
Q 028491           74 WLCCRS-DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR----------------------SPK  130 (208)
Q Consensus        74 ~~~v~~-~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~----------------------~~~  130 (208)
                      ...+.. ++|+.|...+|.++.++.+||+-+.+.++++|+|.++||..++.....                      ...
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~  637 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS  637 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence            444444 599999999999999999999976777899999999999887763110                      011


Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHH
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAV  188 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~  188 (208)
                      ....+++|..  .++++...++.+.++.+|++-+++.+.|.+++ +.|+||++|+++..
T Consensus       638 ~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  638 RLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHhh
Confidence            2345677777  79999999999999999999999999999999 99999999999875

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.56  E-value=1.6e-07  Score=65.59  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=50.8

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|...       +.++.+++++.+|++.|.+++...+||+  |++++++|+||.+|+++
T Consensus        55 ~~~v~~~~~~~-------~~~v~~~~~l~~al~~m~~~~~~~lpVv--d~~~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIVP-------VPIVYCDSKVTDLLRIFRETEPPVVAVV--DKEGKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeecC-------CcEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCeEEEEEEhHHhhc
Confidence            34688999877       8899999999999999999999999999  77799999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=3.9e-07  Score=63.81  Aligned_cols=56  Identities=25%  Similarity=0.453  Sum_probs=51.3

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|.++       +.++.+++++.++++.|.+++...+||+  +++++++|+|+.+|+++
T Consensus        58 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          58 TAPVENVMTRA-------VVSCRPGDLLHDVWQVMKQRGLKNIPVV--DENARPLGVLNARDALK  113 (114)
T ss_pred             cCCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEhHhhcc
Confidence            46789999888       8999999999999999999999999999  77789999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11573 hypothetical protein; Provisional

Probab=98.47  E-value=8.3e-07  Score=76.30  Aligned_cols=90  Identities=12%  Similarity=0.247  Sum_probs=69.4

Q ss_pred             hHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHHHHHHh
Q 028491          115 ERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       115 ~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~~~~~~  191 (208)
                      .++++..++    ...+.+++++|+++.++.+++.++++.++++.+.+++++++||.+++   ++|+|..+|++..+...
T Consensus       174 e~~mi~~vl----~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~  249 (413)
T PRK11573        174 NQDMLLSVL----DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK  249 (413)
T ss_pred             HHHHHHHHh----ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc
Confidence            334444443    35578999999999999999999999999999999999999999875   99999999999865432


Q ss_pred             hHHHHHHHHHhhhcCCC
Q 028491          192 QKGELKRLNEFIRGEYY  208 (208)
Q Consensus       192 ~~~~~~~~~~~~~~~y~  208 (208)
                      .......+.++++.++|
T Consensus       250 ~~~~~~~l~~~~r~~~~  266 (413)
T PRK11573        250 KEFTKENMLRAADEIYF  266 (413)
T ss_pred             CcCCHHHHHhhccCCeE
Confidence            11123445566666554

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.47  E-value=4.6e-07  Score=63.78  Aligned_cols=54  Identities=31%  Similarity=0.416  Sum_probs=50.4

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL  119 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~  119 (208)
                      .+++++|.+.       +.++++++++.++++.|.+.+...+||+  |++++++|+|+..||.
T Consensus        58 ~~v~dim~~~-------~~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINRK-------PVTARPNDPLREALNLMHEHNIRTLPVV--DDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCCC-------CCEECCcCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHhh
Confidence            6799999988       8899999999999999999999999999  7889999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.43  E-value=3.5e-07  Score=78.53  Aligned_cols=76  Identities=16%  Similarity=0.278  Sum_probs=62.9

Q ss_pred             CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHHHHHHhhHHHHHHHHHhhh
Q 028491          128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQQKGELKRLNEFIR  204 (208)
Q Consensus       128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~~~~~~~~~~~~~~~~~~~  204 (208)
                      ...+.+++++|+++.++.+++.++++.++++.+.+++++++||.+++   ++|+|+.+|++..+.+.    ...+.++++
T Consensus       187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~l~~~~~  262 (408)
T TIGR03520       187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK----NFDWQSLLR  262 (408)
T ss_pred             ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC----CCCHHHHcC
Confidence            35578999999988789999999999999999999999999999875   99999999999765421    123556666


Q ss_pred             cCC
Q 028491          205 GEY  207 (208)
Q Consensus       205 ~~y  207 (208)
                      .++
T Consensus       263 ~~~  265 (408)
T TIGR03520       263 EPY  265 (408)
T ss_pred             CCe
Confidence            554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.40  E-value=6.9e-07  Score=73.39  Aligned_cols=93  Identities=17%  Similarity=0.307  Sum_probs=69.3

Q ss_pred             EeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHH
Q 028491          111 GIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRA  187 (208)
Q Consensus       111 G~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~  187 (208)
                      |.++..+  +.++.+-....+.+|+++|+++.++.++++++++.++++.+.+++.+++||+++  + ++|+|+.+|++..
T Consensus        48 g~l~~~e--~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~  125 (292)
T PRK15094         48 DLIDEDT--RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF  125 (292)
T ss_pred             CCCCHHH--HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence            6666555  233444434567899999998667999999999999999999999999999986  4 9999999999976


Q ss_pred             HHHhhHHHHHHHHHhhhcCC
Q 028491          188 VVEQQKGELKRLNEFIRGEY  207 (208)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y  207 (208)
                      ......  ...+.++++.++
T Consensus       126 ~~~~~~--~~~l~~l~r~~~  143 (292)
T PRK15094        126 MRSDAE--AFSMDKVLRQAV  143 (292)
T ss_pred             hhccCC--cCCHHHHcCCCc
Confidence            532111  123556666543

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.35  E-value=1.1e-06  Score=62.17  Aligned_cols=56  Identities=20%  Similarity=0.354  Sum_probs=51.2

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|.+.       +.++.+++++.++++.|.+++.+.+||+  +++|+++|+|+..|+++
T Consensus        68 ~~~i~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvit~~di~~  123 (124)
T cd04600          68 PETVGDIMSPP-------VVTVRPDTPIAELVPLLADGGHHHVPVV--DEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             cccHHHhccCC-------CeeeCCCCcHHHHHHHHHhcCCCceeEE--cCCCCEEEEEEhHHhhc
Confidence            45789999887       8999999999999999999999999999  77899999999999764

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.35  E-value=1.6e-06  Score=60.35  Aligned_cols=55  Identities=24%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL  119 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~  119 (208)
                      ..++.++|.+.       +.++.+++++.++++.|.+++...+||+  +++++++|+|+.+|++
T Consensus        57 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~  111 (113)
T cd04607          57 DDPVSEVMNRN-------PITAKVGSSREEILALMRERSIRHLPIL--DEEGRVVGLATLDDLL  111 (113)
T ss_pred             CCCHHHhhcCC-------CEEEcCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEhHHhc
Confidence            34689999887       8899999999999999999999999999  7789999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=1.4e-06  Score=61.31  Aligned_cols=58  Identities=19%  Similarity=0.378  Sum_probs=50.1

Q ss_pred             cccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC---ceEEEeechHHHHH
Q 028491           54 LENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ---QHIAGIFTERDYLR  120 (208)
Q Consensus        54 ~~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~---~~~iG~vt~~dl~~  120 (208)
                      +...+++++|.+  .       +.++.+++++.++++.|.++++..+||+  |++   ++++|+||..||++
T Consensus        55 ~~~~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 LQKVPVGVIMTRMPN-------ITTTTPEESVLEAAKKLIEHQVDSLPVV--EKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ccCCCHHHHhCCCCC-------cEEECCCCcHHHHHHHHHHcCCCEeeEE--eCCCccceEEEEEEhhheec
Confidence            345678899985  4       7899999999999999999999999999  555   69999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=2e-06  Score=60.08  Aligned_cols=56  Identities=21%  Similarity=0.361  Sum_probs=49.7

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCC--chHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSD--DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~--~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.++  +++.++++.|.+++...+||+  |++|+++|+||..|+++
T Consensus        57 ~~~i~~~~~~~-------~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQP-------VVTLQESEIQDIFTALSLFRQHQIRHLPVL--DDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCCC-------cEEEecccccCHHHHHHHHHHhCCceEEEE--cCCCCEEEEEEhHHhhc
Confidence            45788999877       7888887  789999999999999999999  77899999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=1.8e-06  Score=60.25  Aligned_cols=55  Identities=18%  Similarity=0.312  Sum_probs=49.9

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|..+       +.++++++++.++++.|.+.+...+||+  ++ ++++|+|+..|+++
T Consensus        59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          59 RVNVYEIMTKP-------LISVSPDMDIKYCARLMERTNIRRAPVV--EN-NELIGIISLTDIFL  113 (114)
T ss_pred             ccCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCEeeEe--eC-CEEEEEEEHHHhhc
Confidence            46789999877       8999999999999999999999999999  56 99999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.30  E-value=2.1e-06  Score=59.46  Aligned_cols=57  Identities=21%  Similarity=0.379  Sum_probs=51.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ..+++++|.++       +.++.+++++.++++.|.+++...+||+  +++++++|+|+..||+++
T Consensus        52 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDTD-------VISVSADDDQEEVARLFEKYDLLALPVV--DEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCCC-------CeEEcCCCCHHHHHHHHHHcCCceeeeE--CCCCcEEEEEEhHHhhhh
Confidence            45788999887       8999999999999999999999999999  778999999999998763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.30  E-value=3.8e-06  Score=73.81  Aligned_cols=113  Identities=18%  Similarity=0.252  Sum_probs=80.1

Q ss_pred             cccHHHhhc-ccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---CCCc
Q 028491           56 NISVAEVLM-TKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---SPKY  131 (208)
Q Consensus        56 ~~~v~~~m~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---~~~~  131 (208)
                      ..+++++|. .+       ++++.+++++.++.+.|.+++...+||+  |++++++|+||.+||++.+.....   ....
T Consensus       146 ~~~V~dim~~~~-------~v~v~~~~sl~eal~~m~~~~~~~lpVV--De~g~lvGiIT~~DLl~~~~~p~a~~d~~g~  216 (486)
T PRK05567        146 SQPVSEVMTKER-------LVTVPEGTTLEEALELLHEHRIEKLPVV--DDNGRLKGLITVKDIEKAEEFPNACKDEQGR  216 (486)
T ss_pred             CCcHHHHcCCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHhhhhhhCCCcccccCCC
Confidence            357899998 45       8999999999999999999999999999  889999999999999876432110   0012


Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHH
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRA  187 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~  187 (208)
                      ..+...|..       .+  .-.+.+..|.+.+++. +|+|.  + ..|+++..+.++.
T Consensus       217 l~V~aai~~-------~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        217 LRVGAAVGV-------GA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             EEEEeeccc-------Cc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence            233444433       22  2277888888899984 46663  3 6666655544444

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.30  E-value=2.6e-06  Score=59.20  Aligned_cols=56  Identities=23%  Similarity=0.363  Sum_probs=50.8

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.+++++.++++.|..++...+||+  +++++++|+|+..||++
T Consensus        58 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~iG~it~~di~~  113 (114)
T cd04604          58 TLPVADVMTRN-------PKTIDPDALAAEALELMEENKITALPVV--DDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             cCCHHHhhccC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEEEHHHhhc
Confidence            35799999988       8899999999999999999999999999  67899999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=1.5e-06  Score=59.57  Aligned_cols=45  Identities=20%  Similarity=0.215  Sum_probs=41.0

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLR  120 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~  120 (208)
                      +.++.+++++.+|++.|.++++.++||+  +++ |+++|+||.+|+++
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVI--DPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEE--ECCCCCceEEeehhhhhc
Confidence            4689999999999999999999999999  565 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.29  E-value=2.1e-06  Score=60.44  Aligned_cols=53  Identities=28%  Similarity=0.590  Sum_probs=48.4

Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR  186 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~  186 (208)
                      .+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++  ++|+|+..|+.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            569999987  78999999999999999999999999999864  999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=3e-06  Score=58.89  Aligned_cols=58  Identities=33%  Similarity=0.489  Sum_probs=51.7

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      +...++.++|.++       +.++.+++++.++++.|.+++...+||+  +++|+++|+++..|+++
T Consensus        55 ~~~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          55 LKDAKVREVMNSP-------VITIDANDSIAKARWLMSNNNISRLPVL--DDKGKVGGIVTEDDILR  112 (113)
T ss_pred             hcCCcHHHhccCC-------ceEECCCCcHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEEHHHhhc
Confidence            3456789999887       8999999999999999999999999999  77889999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.28  E-value=3e-06  Score=58.57  Aligned_cols=56  Identities=18%  Similarity=0.357  Sum_probs=51.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|...       +.++.+++++.++.+.|.+++...+||+  +++++++|+++..|+++
T Consensus        52 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTKN-------PITVNPKTSVASVAHMMIWEGIEMLPVV--DDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEE--cCCCCEEEEEEHHHhhc
Confidence            45789999887       8999999999999999999999999999  78899999999999764

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.27  E-value=8.4e-06  Score=71.16  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=53.0

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI  122 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~  122 (208)
                      .+++++|+++       ++++++++++.+|+++|.++++..+||+  |++++++|+||.+||++..
T Consensus       146 ~~V~dIMt~~-------litv~~~~sL~eAl~lM~~~~i~~LPVV--D~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       146 TQVRDIMSTD-------LVTAPADTEPRKAFDLLEHAPRDVAPLV--DADGTLAGILTRTGALRAT  202 (475)
T ss_pred             CCHHHHccCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence            5799999988       9999999999999999999999999999  7889999999999998753

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.27  E-value=6.1e-06  Score=72.09  Aligned_cols=95  Identities=12%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      ..++++|+++       +.++++++++.+|++.|.+++...+||+  |++++++|+||..||++.....       ++.+
T Consensus       148 ~~V~diMt~~-------~itV~~d~sL~eAl~lM~~~~i~~LPVV--D~~g~lvGIIT~~DIl~~~~~~-------~~~~  211 (479)
T PRK07807        148 TQVRDVMSTD-------LVTLPAGTDPREAFDLLEAARVKLAPVV--DADGRLVGVLTRTGALRATIYT-------PAVD  211 (479)
T ss_pred             CCHHHhccCC-------ceEECCCCcHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHhhCC-------chhh
Confidence            4699999988       9999999999999999999999999999  7788999999999998753221       1111


Q ss_pred             h----hccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec
Q 028491          137 I----MTDENKLITLPSDANILHAMQLMTDKHIRHVPVID  172 (208)
Q Consensus       137 i----m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd  172 (208)
                      .    +..  ..  +.......+.+..|.+.+++. +++|
T Consensus       212 ~~g~l~V~--aa--v~~~~~~~~~a~~Lv~aGvd~-i~~D  246 (479)
T PRK07807        212 AAGRLRVA--AA--VGINGDVAAKARALLEAGVDV-LVVD  246 (479)
T ss_pred             hhhccchH--hh--hccChhHHHHHHHHHHhCCCE-EEEe
Confidence            1    111  11  122234566777777777765 4555

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.26  E-value=2.8e-07  Score=76.26  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=71.4

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhcCC
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQQKGELKRLNEFIRGEY  207 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~~~~~~~~~~~~~~~~~~~~~y  207 (208)
                      ..+|+|+|.++.+...++.+++.++.++.+......++|+..++   ++|++..+|+++++.+......+.+....+++|
T Consensus       199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epy  278 (423)
T COG4536         199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPY  278 (423)
T ss_pred             cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCe
Confidence            46899999999999999999999999999999999999999987   999999999999999887767777788888888


Q ss_pred             C
Q 028491          208 Y  208 (208)
Q Consensus       208 ~  208 (208)
                      |
T Consensus       279 F  279 (423)
T COG4536         279 F  279 (423)
T ss_pred             e
Confidence            7

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.26  E-value=3.6e-06  Score=60.07  Aligned_cols=64  Identities=14%  Similarity=0.347  Sum_probs=52.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhcC
Q 028491          143 KLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIRGE  206 (208)
Q Consensus       143 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~~~  206 (208)
                      ++.++++++++.++++.|.+++++.+||+|++  ++|+++..|+++.+.........++.++|..+
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~   68 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQ   68 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhcc
Confidence            68899999999999999999999999999874  99999999999877654433344666666544

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.25  E-value=3.6e-06  Score=57.82  Aligned_cols=56  Identities=25%  Similarity=0.431  Sum_probs=50.4

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|.+.       +.++.+++++.++++.|.+++...+||+  +++|+++|+++..|+++
T Consensus        51 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSKD-------LVVAVPEMDIMDAARVMFRTGISKLPVV--DENNNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCCC-------CeEECCCCCHHHHHHHHHHhCCCeEeEE--CCCCeEEEEEEHHHhhc
Confidence            34688999887       8899999999999999999999999999  78899999999999764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.25  E-value=1.3e-05  Score=68.22  Aligned_cols=117  Identities=21%  Similarity=0.354  Sum_probs=96.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCC-----ccchhhhhcc-CCCeEEE
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK-----YTRVAEIMTD-ENKLITL  147 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~-----~~~v~~im~~-~~~~~~v  147 (208)
                      ++.+.+..++.++...+..+++..+||.+ .+.+.+..++|.+.+++.+........     ..++.+.-.. -.++..+
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d-~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i  242 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVID-PETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASI  242 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeec-ccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheee
Confidence            48999999999999999999999999994 266799999999999998766554321     2334333211 1158899


Q ss_pred             cCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          148 PSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       148 ~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      ..++++.+|++.|...+++.+||++..  .+|.++..|+.....+.
T Consensus       243 ~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~  288 (381)
T KOG1764|consen  243 SEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG  288 (381)
T ss_pred             cCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence            999999999999999999999999976  99999999999988764

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.25  E-value=3.5e-06  Score=57.86  Aligned_cols=54  Identities=17%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      +++++|.+.       +.++.+++++.++++.|.+++...+||+  +++++++|+|+.+++++
T Consensus        52 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEPF-------KVTVSVDDDLRIVLSRMFAHDMSWLPCV--DEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhcccC-------CEEECCCCCHHHHHHHHHHCCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            578888877       7889999999999999999999999999  77889999999999764

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.25  E-value=3.4e-06  Score=59.18  Aligned_cols=56  Identities=30%  Similarity=0.518  Sum_probs=50.9

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.+++++.++++.|.+.+.+.+||+  +++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRD-------PITVSPDASVEEAAELMLERKISGLPVV--DDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCC-------CeEeCCCCcHHHHHHHHHHcCCCceeEE--CCCCcEEEEEEHHHhhh
Confidence            46788999887       8999999999999999999999999999  67789999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.23  E-value=4e-06  Score=57.72  Aligned_cols=55  Identities=13%  Similarity=0.303  Sum_probs=50.0

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      .+++++|.+.       +.++++++++.++.+.|.+.+...+||+  +++|+++|+++.+|+++
T Consensus        54 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~vv--~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLED-------VFTVQPDASLRDVLGLVLKRGPKYVPVV--DEDGKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcCC-------ceEECCCCcHHHHHHHHHHcCCceeeEE--CCCCeEEEEEehHHhhc
Confidence            4688999887       8999999999999999999999999999  77889999999999763

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=3.3e-06  Score=59.53  Aligned_cols=56  Identities=30%  Similarity=0.535  Sum_probs=50.9

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|..+       +..+.+++++.++.+.|.+++...+||+  +++|+++|+++..|+++
T Consensus        66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMSTP-------VYSVTPDDSIATAVELMLEHDIGRLPVV--NEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeeeEE--cCCCcEEEEEEhHHhhc
Confidence            56788999877       8999999999999999999999999999  77899999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=4.2e-06  Score=58.04  Aligned_cols=55  Identities=16%  Similarity=0.349  Sum_probs=49.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|...       +.++.+++++.++++.|.+++...+||+  + +++++|+||.+|+++
T Consensus        57 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNPE-------PIVASPDDSIDEVRRLMVERHLRYLPVL--D-GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEE--E-CCEEEEEEEHHHhhc
Confidence            45799999887       8899999999999999999999999999  4 589999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=5e-06  Score=58.56  Aligned_cols=57  Identities=33%  Similarity=0.585  Sum_probs=51.3

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ...++.++|...       +.++.+++++.++++.|.+.+...+||+  +++++++|+++..|++.
T Consensus        65 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKTD-------VLTVTPDTPLREAAEIMVENKIGCLPVV--DDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCCC-------CeEeCCCCcHHHHHHHHHHcCCCeEEEE--cCCCCEEEEEEHHHhhc
Confidence            456789999887       8999999999999999999999999999  67789999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.21  E-value=2.6e-06  Score=59.14  Aligned_cols=55  Identities=22%  Similarity=0.341  Sum_probs=50.0

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      .++.++|.+.       +.++.+++++.++++.|.+++...+||+  +++++++|+|+..|++.
T Consensus        58 ~~v~~i~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTPN-------PVCATSDTPVLEALHLMVQGKFRHLPVV--DKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCCC-------CeEEcCCCCHHHHHHHHHHcCCCcccEE--CCCCCEEEEEEHHHhcc
Confidence            5789999887       8899999999999999999999999999  67799999999999763

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=3.5e-06  Score=59.72  Aligned_cols=44  Identities=23%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL  119 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~  119 (208)
                      +.++.+++++.+|++.|.+++...+||+  |++++++|+||..|+.
T Consensus        78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~vGiit~~di~  121 (123)
T cd04627          78 VISINGDQPLIDALHLMHNEGISSVAVV--DNQGNLIGNISVTDVR  121 (123)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCceEEEE--CCCCcEEEEEeHHHhh
Confidence            8899999999999999999999999999  7789999999999953

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=4.4e-06  Score=59.12  Aligned_cols=56  Identities=30%  Similarity=0.549  Sum_probs=50.6

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       ++++++++++.++++.|.+.+...+||+  +++++++|+|+..|+++
T Consensus        69 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRN-------VITITPDDSIKDAAELMLEKRVGGLPVV--DDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCC-------ceEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCcEEEEEEHHHhhc
Confidence            45788999887       8999999999999999999999999999  66789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.21  E-value=3.7e-06  Score=58.70  Aligned_cols=55  Identities=24%  Similarity=0.378  Sum_probs=49.3

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC--ceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ--QHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~--~~~iG~vt~~dl~~  120 (208)
                      ..+.++|.+.       +.++.+++++.++++.|.+++...+||+  +++  ++++|+|+..|+++
T Consensus        58 ~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~Vv--d~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATPP-------LLTVHPDEPLAHALDRMASRGLRQLPVV--DRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccCC-------ceEECCCCCHHHHHHHHHHcCCceeeEE--eCCCCCeEEEEEEhHHhhc
Confidence            3488888877       8999999999999999999999999999  565  79999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.20  E-value=5.5e-06  Score=57.31  Aligned_cols=56  Identities=25%  Similarity=0.434  Sum_probs=50.4

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ...++.++|.+.       +.++.+++++.++++.|.+++...+||+  + +++++|+||..|+++
T Consensus        54 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMSTD-------VVTVPPDTPLSEVQELMVEHDIGRVPVV--E-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcCC-------CEEECCCCcHHHHHHHHHHcCCCeeEEE--e-CCEEEEEEEhHHhhc
Confidence            356789999887       8999999999999999999999999999  5 789999999999763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.19  E-value=6.1e-06  Score=56.99  Aligned_cols=56  Identities=29%  Similarity=0.490  Sum_probs=50.6

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|.+.       +.++.+++++.++++.|.+.+...+||+  +++|+++|+|+..|+++
T Consensus        55 ~~~v~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          55 QTPVGEVMSSP-------LLTVPADTSLYDARQLMREHGIRHLVVV--DDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CcCHHHhcCCC-------ceEECCCCCHHHHHHHHHHcCCeEEEEE--CCCCcEEEEEEhHHhhc
Confidence            56789999887       8999999999999999999999999999  77789999999999764

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.18  E-value=4.6e-06  Score=69.54  Aligned_cols=58  Identities=28%  Similarity=0.395  Sum_probs=52.1

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      +...+++++|.++       +.++.+++++.+|++.|.++++..+||+  + +++++|+||..|++++
T Consensus       266 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTPG-------GIRVRPGILAVDALNLMQSRHITSVLVA--D-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCCC-------CEEECCCCCHHHHHHHHHHCCCcEEEEe--e-CCEEEEEEEhHHhHhc
Confidence            3456899999988       9999999999999999999999999999  4 6789999999998763

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.18  E-value=3.7e-06  Score=60.66  Aligned_cols=55  Identities=24%  Similarity=0.384  Sum_probs=50.3

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.+++++.++++.|.+.+.+.+||+  + +|+++|+|+..|+++
T Consensus        80 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~l~Vv--d-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTRP-------VVTVGEDTPLAEVAELMEEHRIKRVPVV--R-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCccCEe--c-CCEEEEEEEhHhhhc
Confidence            45789999887       8999999999999999999999999999  6 799999999999764

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=6.8e-06  Score=59.58  Aligned_cols=55  Identities=27%  Similarity=0.457  Sum_probs=49.7

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|.+.       +..+.+++++.++++.|.+++...+||+  ++ ++++|+|+..|+++
T Consensus        80 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTEE-------IITVSPNDDVVDAAKLMLEANISGLPVV--DN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEE--eC-CEEEEEEEHHHHhh
Confidence            45799999887       8899999999999999999999999999  55 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.17  E-value=4.8e-06  Score=72.04  Aligned_cols=81  Identities=25%  Similarity=0.509  Sum_probs=70.1

Q ss_pred             EEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHH
Q 028491          110 AGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVR  186 (208)
Q Consensus       110 iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~  186 (208)
                      -|.+...+  +.++.+-....+.+++++|+++.++..++.+.+..++.+.+.+++++++||.+++   ++|++..+|++.
T Consensus       186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~  263 (429)
T COG1253         186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR  263 (429)
T ss_pred             cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence            47777776  3455555556789999999999999999999999999999999999999999954   999999999999


Q ss_pred             HHHHhh
Q 028491          187 AVVEQQ  192 (208)
Q Consensus       187 ~~~~~~  192 (208)
                      ......
T Consensus       264 ~~~~~~  269 (429)
T COG1253         264 ALLDGQ  269 (429)
T ss_pred             HHhcCc
Confidence            998764

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=5.8e-06  Score=57.21  Aligned_cols=55  Identities=15%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+.++|...       +.++.+++++.++.+.|.+++...+||+  +++++++|+++..|+.+
T Consensus        56 ~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRRD-------FPTVSPSATLDAVLRLMQQGGAPAVPVV--DGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcCC-------CcEECCCCcHHHHHHHHHhcCCceeeEE--cCCCCEEEEEEHHHhhc
Confidence            4688999877       8999999999999999999999999999  67789999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.16  E-value=6.1e-06  Score=57.61  Aligned_cols=55  Identities=16%  Similarity=0.300  Sum_probs=48.1

Q ss_pred             ccHHHhhcccCCCCCCCeEEecC--CchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRS--DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~--~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++++|.+.       +.++..  ++++.++++.|.+++...+||+  +++++++|+||..|+++
T Consensus        57 ~~v~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv--~~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPR-------EVLVVAPTGITLEEANEILRESKKGKLPIV--NDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCC-------ceEEECCCCCCHHHHHHHHHhcCCCceeEE--CCCCeEEEEEEHHHhhc
Confidence            4588999877       566655  9999999999999999999999  77889999999999764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.16  E-value=4e-06  Score=58.48  Aligned_cols=58  Identities=21%  Similarity=0.453  Sum_probs=49.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+...     +.++.+++++.+|++.|.+++.+.+||+  +++++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~~~~-----~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAK-----LVTVLSEESLAEVLKLLEEQGLDELAVV--EDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhccccc-----ceEECCCCcHHHHHHHHHHCCCCeeEEE--cCCCcEEEEEeccceec
Confidence            3568888875322     5689999999999999999999999999  67789999999999753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.16  E-value=4.1e-06  Score=58.19  Aligned_cols=55  Identities=24%  Similarity=0.379  Sum_probs=49.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ...+.++|.+.       +.++.+++++.++.+.|.+++...+||+  ++ |+++|+||..|+++
T Consensus        59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTTE-------VLTVSPDDSIVDLAQLMLKAKPKRYPVV--DD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhccC-------ceEECCCCcHHHHHHHHHHhCCCccCEE--EC-CEEEEEEEHHHHhc
Confidence            45788999887       8899999999999999999999999999  55 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.15  E-value=6.2e-06  Score=57.15  Aligned_cols=55  Identities=22%  Similarity=0.456  Sum_probs=49.4

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.+++++.+++..|.+++...+||+  ++ ++++|+||..|++.
T Consensus        56 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQD-------VFYVNEEDTIDEALDIMREKQIGRLPVV--DD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcCC-------cEEEcCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEhHHhcc
Confidence            35788999887       8899999999999999999999999999  55 89999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.15  E-value=7.1e-06  Score=56.77  Aligned_cols=55  Identities=27%  Similarity=0.401  Sum_probs=49.7

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|...       +.++.+++++.++++.|.+++.+.+||+  ++ ++++|+++..|+++
T Consensus        56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTAP-------PITIPPDATVFEALLLMLERGIHHLPVV--DD-GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCCC-------CeEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhc
Confidence            45789999887       8999999999999999999999999999  55 89999999999763

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.15  E-value=6.8e-06  Score=72.20  Aligned_cols=60  Identities=12%  Similarity=0.243  Sum_probs=53.3

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ...+++++|++..+     ++++.+++++.+|++.|.++++..+||+  |++++++|+||.+|+++.
T Consensus       159 ~~~~V~dIMt~~~~-----~itv~~d~~l~eAl~lM~e~~i~~LPVV--D~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        159 LDTKVKDFMTPFEK-----LVTANEGTTLKEANDIIWDHKLNTLPIV--DKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCCHHHHhCCCCC-----eEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEhHHHHhc
Confidence            35689999997322     8899999999999999999999999999  788999999999998874

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.14  E-value=7.4e-06  Score=56.47  Aligned_cols=56  Identities=23%  Similarity=0.418  Sum_probs=48.8

Q ss_pred             cccHHHhhcccCCCCCCCeEEecC-CchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRS-DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~-~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.+ ++++.++++.|.+.+...+||+  +++++++|+|+..|++.
T Consensus        53 ~~~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTPE-------NLLTTVEGTSLEEALELLHEHKIEKLPVV--DDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhcccC-------ceEEecCCCCHHHHHHHHHHhCCCeeeEE--cCCCCEEEEEEhhhhhc
Confidence            45789999876       666667 9999999999999999999999  77899999999999764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.14  E-value=6.7e-06  Score=57.00  Aligned_cols=56  Identities=20%  Similarity=0.404  Sum_probs=50.9

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC-CceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~-~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.+++++.++++.|.+.+...+||+  ++ .++++|+++..|++.
T Consensus        57 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTKP-------PVVVYPEDSLEDALKKFEDSDYEQLPVV--DDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccCC-------CcEEcCCCCHHHHHHHHhhCCccEeeEE--eCCCCEEEEEEEhHHhhc
Confidence            36899999988       8999999999999999999999999999  56 789999999999763

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.14  E-value=4.6e-06  Score=59.43  Aligned_cols=59  Identities=24%  Similarity=0.395  Sum_probs=47.0

Q ss_pred             ccccHHHhhcccCCCCCCCeEEe----cCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCC----RSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLR  120 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v----~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~  120 (208)
                      ...+++++|.+...     .+.+    .+++++.++++.|.+++...+||+  |++ ++++|+||..|+++
T Consensus        62 ~~~~v~~im~~~~~-----~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv--d~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKED-----LKALDLEELENASVGDVVETLKASGRQHALVV--DREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhh-----hccccHHHhccCcHHHHHHHHHHCCCceEEEE--ECCCCEEEEEEeHHHHhh
Confidence            35679999987611     1223    368999999999999999999999  565 79999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.14  E-value=7.7e-06  Score=55.93  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=49.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL  119 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~  119 (208)
                      ...+.++|.+.       +.++.+++++.++++.|.+++...+||+  ++ ++++|+||..|++
T Consensus        50 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTRE-------VVTISPEASLLEAKRLMEEKKIERLPVL--RE-RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccCC-------CEEECCCCCHHHHHHHHHHcCCCEeeEE--EC-CEEEEEEEHHHhc
Confidence            34688999887       8999999999999999999999999999  55 9999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=9.3e-06  Score=56.16  Aligned_cols=55  Identities=24%  Similarity=0.427  Sum_probs=49.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.++       +.++.+++++.++++.|.+.+...+||+  ++ ++++|+|+..|+++
T Consensus        58 ~~~~~~~~~~~-------~~~v~~~~~~~~~l~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTRN-------VITVTPDDTVDEAMALMTERRFRHLPVV--DG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCCC-------cEEECCCCcHHHHHHHHHHcCCCEeEEE--eC-CEEEEEEEHHHhhc
Confidence            45789999877       8999999999999999999999999999  55 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=5.6e-06  Score=58.23  Aligned_cols=56  Identities=30%  Similarity=0.536  Sum_probs=50.4

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ...++.++|...       +.++.+++++.++++.|.+.+...+||+  ++ ++++|+++..|+++
T Consensus        65 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTRP-------VITIEPDTSVSDVASLMLENNIGGLPVV--DD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccCC-------ceEECCCCcHHHHHHHHHHcCCCcccEE--EC-CEEEEEEEHHHhhc
Confidence            456788999877       8999999999999999999999999999  56 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.13  E-value=7.3e-06  Score=68.17  Aligned_cols=57  Identities=16%  Similarity=0.243  Sum_probs=52.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ..+++++|.++       +.++.+++++.+|++.|.+++...+||+  |++++++|+|+..|++++
T Consensus       262 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTRG-------GTTLQAQSRAIDAKEILMKRKITAAPVV--DENGKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHhc
Confidence            45689999988       8999999999999999999999999999  777899999999998763

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=7.9e-06  Score=58.21  Aligned_cols=58  Identities=29%  Similarity=0.573  Sum_probs=50.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ...+.++|.++       ++++.+++++.++++.|.+++...+||++.+++++++|+||..|+++
T Consensus        70 ~~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSP-------VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCC-------CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45688999887       89999999999999999999999999994224689999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=5.2e-06  Score=59.10  Aligned_cols=45  Identities=16%  Similarity=0.413  Sum_probs=42.2

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      +.++++++++.+|++.|.+++...+||+  +++++++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVV--DEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEE--CCCCCEEEEEEHHHHhc
Confidence            8899999999999999999999999999  77799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.13  E-value=1e-05  Score=55.90  Aligned_cols=54  Identities=26%  Similarity=0.521  Sum_probs=49.0

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      .++++|.++       +.++.+++++.++++.|.+++...+||+  +++++++|+|+..|+++
T Consensus        56 ~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTRN-------VITATPDEPIDVAARKMERHNISALPVV--DAENRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCCC-------CeEECCCCcHHHHHHHHHHhCCCEEeEE--CCCCcEEEEEEHHHhhh
Confidence            488888877       8899999999999999999999999999  78899999999999753

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.12  E-value=1.1e-05  Score=66.41  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=58.4

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ  125 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~  125 (208)
                      ..++.++..+|+++       +.++.+.+|+..+.+.|-..++.-+||+  +++.+++|+||++|+++++...
T Consensus       245 ~~~~t~ieKVMtkn-------p~tv~~~tsVAsvaq~MiwE~iem~PVv--~~n~~llGiitR~dvlk~lq~~  308 (432)
T COG4109         245 KKPSTTIEKVMTKN-------PITVRAKTSVASVAQMMIWEGIEMLPVV--DSNNTLLGIITRQDVLKSLQMI  308 (432)
T ss_pred             CCCCccHHHHhccC-------CeeecccchHHHHHHHHHhccceeeeEE--cCCceEEEEEEHHHHHHHHHHh
Confidence            34577899999998       9999999999999999999999999999  8999999999999999987543

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=8.8e-06  Score=56.42  Aligned_cols=55  Identities=25%  Similarity=0.456  Sum_probs=49.8

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      .+++++|.+.       +.++.+++++.++++.|.+.+...+||+  +++++++|+++..|+++
T Consensus        58 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTRG-------VVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccCC-------ccEECCCCCHHHHHHHHHHcCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            3589999887       8899999999999999999999999999  67799999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.12  E-value=1.1e-05  Score=55.79  Aligned_cols=55  Identities=31%  Similarity=0.538  Sum_probs=49.7

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      .++.++|...       +.++.+++++.++++.|.+.+...+||+  +++++++|+|+..|+++
T Consensus        55 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTKD-------VITIDEDEQLYDAIRLMNKHNVGRLIVT--DDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcCC-------ceEECCCCCHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEEhHHhhc
Confidence            5688898877       8999999999999999999999999999  67789999999999764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.11  E-value=1.1e-05  Score=46.51  Aligned_cols=46  Identities=30%  Similarity=0.525  Sum_probs=41.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      +.++.+++++.++.+.|.+++...+||+  +++++++|+++..++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVV--DEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEE--CCCCeEEEEEEHHHHHHh
Confidence            5778999999999999999999999999  677899999999998653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=7.8e-06  Score=57.63  Aligned_cols=45  Identities=24%  Similarity=0.454  Sum_probs=41.9

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      +.++.+++++.++++.|.+++.+.+||+  +++++++|+||..|+++
T Consensus        75 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~~~Givt~~di~~  119 (120)
T cd04641          75 VRTCSPDDCLRTIFDLIVKARVHRLVVV--DENKRVEGIISLSDILQ  119 (120)
T ss_pred             CeEEcCCCcHHHHHHHHHhcCccEEEEE--CCCCCEEEEEEHHHhhc
Confidence            7899999999999999999999999999  77789999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=9.4e-06  Score=58.25  Aligned_cols=54  Identities=30%  Similarity=0.511  Sum_probs=49.0

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      .++.++|.++       +..+.+++++.++.+.|.+.+...+||+  ++ ++++|++|..|+++
T Consensus        78 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~iGvit~~dl~~  131 (132)
T cd04636          78 KKVEEIMTKK-------VITVDEDTTIEDVARIMSKKNIKRLPVV--DD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CCHHHhccCC-------ceEECCCCcHHHHHHHHHHCCCCeeEEE--EC-CEEEEEEEHHHhhc
Confidence            3788999887       8999999999999999999999999999  56 99999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=6.5e-06  Score=56.01  Aligned_cols=57  Identities=14%  Similarity=0.379  Sum_probs=48.2

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      -.+.++++...      .+.++.+++++.++.+.|.+++...+||+  +++++++|+|+.+|+++
T Consensus        39 iv~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~~~~~~~Giit~~di~~   95 (96)
T cd04614          39 IITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPII--NGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             EEEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            45666766543      16889999999999999999999999999  67789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.10  E-value=1.2e-05  Score=55.66  Aligned_cols=55  Identities=24%  Similarity=0.357  Sum_probs=49.3

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|.++       +..+.+++++.++++.|.+++...+||+  + +++++|+|+..|+++
T Consensus        56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~-~~~~~G~it~~dl~~  110 (111)
T cd04589          56 STPVGEIATFP-------LITVDPDDFLFNALLLMTRHRIHRVVVR--E-GGEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCHHHHhCCC-------cEEECCCCcHHHHHHHHHHhCccEEEEe--e-CCEEEEEEEhHHhhc
Confidence            45788999887       8899999999999999999999999999  4 489999999999764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=6.8e-06  Score=57.27  Aligned_cols=54  Identities=22%  Similarity=0.361  Sum_probs=47.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+++++|.+.       +.++.+++++.++++.|.+.+  .+||+  +++++++|++|..|+++
T Consensus        62 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~--~~~Vv--~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNTD-------VPVIIDDADIEEILHLLIDQP--FLPVV--DDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcCC-------CceecCCCCHHHHHHHHhcCC--ceeEE--eCCCeEEEEEEHHHhhc
Confidence            45789999988       899999999999999998755  58999  78899999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.08  E-value=1.2e-05  Score=55.63  Aligned_cols=55  Identities=29%  Similarity=0.482  Sum_probs=48.8

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.+++++.++++.|.+++...+||+  +++ +++|+|+..|+++
T Consensus        57 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          57 EVPVGEVMSTP-------LITIDPNASLNEAAKLMAKHGIKRLPVV--DDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             cCCHHHhcCCC-------cEEECCCCCHHHHHHHHHHcCCCeeEEe--eCC-EEEEEEEhhhhhc
Confidence            45788999877       8899999999999999999999999999  554 8999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.08  E-value=1.4e-05  Score=55.21  Aligned_cols=55  Identities=33%  Similarity=0.578  Sum_probs=49.7

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+.++|.++       +.++.+++++.++++.|.+++...+||+  +++++++|+|+..|+++
T Consensus        56 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTRD-------PVTASPDETLRDALKRMAERDIGRLPVV--DDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccCC-------CeEECCCCCHHHHHHHHHhCCCCeeeEE--cCCCCEEEEEEHHHhhh
Confidence            4678888887       8999999999999999999999999999  67799999999999764

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=1.4e-05  Score=55.29  Aligned_cols=56  Identities=25%  Similarity=0.470  Sum_probs=50.2

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.++       +.++.+++++.++.+.|.+++...+||+  +++++++|+++..|+++
T Consensus        56 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTRD-------LVTVDPDEPVAEAAKLMRKNNIRHHLVV--DKGGELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccCC-------CEEECCCCcHHHHHHHHHHcCccEEEEE--cCCCcEEEEEEHHHhcc
Confidence            35788999887       8999999999999999999999999999  77799999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=1.5e-05  Score=56.22  Aligned_cols=55  Identities=24%  Similarity=0.392  Sum_probs=50.0

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      .+++++|..+       +.++.+++++.++++.|.+++...+||+  +++++++|+++..|+++
T Consensus        67 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~vv--~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTRD-------PITVSPDTPVDEASKLLLENSISCLPVV--DENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcCC-------CeeeCCCCcHHHHHHHHHHcCCCeEeEE--CCCCCEEEEEEHHHhhh
Confidence            4688899887       8999999999999999999999999999  77799999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.04  E-value=1e-05  Score=55.54  Aligned_cols=53  Identities=21%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ++.++|.+.       +.++.+++++.++++.|.+++...+||+  + +++++|++|..|++.
T Consensus        51 ~~~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~-~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVRG-------IPYVRLTSTAEEAWEVMMKNKTRWCPVV--D-DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhcC-------CcEEcCCCCHHHHHHHHHHcCcceEEEE--E-CCEEEEEEEHHHhhc
Confidence            577888877       8899999999999999999999999999  5 589999999999764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.04  E-value=1.8e-05  Score=55.58  Aligned_cols=56  Identities=36%  Similarity=0.533  Sum_probs=50.3

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ...++.++|.+.       +.++.+++++.++++.|.+.+...+||+  ++ ++++|+++..|+++
T Consensus        65 ~~~~v~~~~~~~-------~~~i~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTKD-------VITVHPLDTVEEAALLMREHRIGCLPVV--ED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhCC-------CeEECCCCcHHHHHHHHHHcCCCeEEEe--eC-CEEEEEEEHHHhhc
Confidence            356789999887       8999999999999999999999999999  55 89999999999764

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.02  E-value=2.4e-05  Score=45.03  Aligned_cols=45  Identities=29%  Similarity=0.689  Sum_probs=40.6

Q ss_pred             eEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHH
Q 028491          144 LITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAV  188 (208)
Q Consensus       144 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~  188 (208)
                      +.++.+++++.++++.|...+.+.+||+++ + ++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            567899999999999999999999999987 4 99999999998765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.00  E-value=1.8e-05  Score=54.69  Aligned_cols=54  Identities=20%  Similarity=0.301  Sum_probs=46.8

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+.++|. .       +.++.+++++.++++.|.+++.+.+||+  +++++++|+||..|++.
T Consensus        57 ~~~~~~~~-~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~~  110 (111)
T cd04590          57 LDLRDLLR-P-------PLFVPESTPLDDLLEEMRKERSHMAIVV--DEYGGTAGLVTLEDILE  110 (111)
T ss_pred             CCHHHHhc-C-------CeecCCCCcHHHHHHHHHhcCCcEEEEE--ECCCCEEEEeEHHHhhc
Confidence            35666664 4       6889999999999999999999999999  67899999999999753

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.99  E-value=0.00012  Score=64.61  Aligned_cols=61  Identities=18%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ..+|+++|++...     ++++.+++++.+|++.|.+++...+||+  |++++++|+||.+||++.+.
T Consensus       162 ~~~V~eIMt~~~~-----lvtv~~~~sL~eAl~~m~~~~~~~LPVV--D~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        162 ETKLSEVMTSDDD-----LVTAPAGIDLEEAEAVLKDSKKGKLPLV--NEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             CCcHHHHhccCCC-----cEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHhh
Confidence            5679999986533     6799999999999999999999999999  78899999999999988653

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.99  E-value=1.6e-05  Score=69.20  Aligned_cols=100  Identities=9%  Similarity=0.265  Sum_probs=69.3

Q ss_pred             CCCceEEEeechHHHHHH--HHhcCC-----CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--
Q 028491          104 GEQQHIAGIFTERDYLRK--IVGQGR-----SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--  174 (208)
Q Consensus       104 d~~~~~iG~vt~~dl~~~--~~~~~~-----~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--  174 (208)
                      |...++.-.+...+++..  +.....     .....+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++  
T Consensus       300 d~g~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~  377 (454)
T TIGR01137       300 DSIRNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGK  377 (454)
T ss_pred             CCCccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence            555566665555554332  111110     1235679999987  89999999999999999999999999999864  


Q ss_pred             eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491          175 IVGMISIVDVVRAVVEQQKGELKRLNEFIRG  205 (208)
Q Consensus       175 ~vGiit~~dll~~~~~~~~~~~~~~~~~~~~  205 (208)
                      ++|+|+..|+++.+..........+.+++..
T Consensus       378 ~~Givt~~dl~~~~~~~~~~~~~~v~~im~~  408 (454)
T TIGR01137       378 VLGSVTLRELLSALFAGKANPDDAVSKVMSK  408 (454)
T ss_pred             EEEEEEHHHHHHHHhccCCCcCCCHHHhcCC
Confidence            9999999999997754321112245555544

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.97  E-value=1.7e-05  Score=54.83  Aligned_cols=49  Identities=16%  Similarity=0.331  Sum_probs=44.4

Q ss_pred             hhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           62 VLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        62 ~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      +|.++       +.++++++++.++.+.|.+++...+||+   ++++++|+|+..|+++
T Consensus        56 ~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~pVv---~~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDPS-------PFTVSPRTSLEKVHQLFRKLGLRHLLVV---DEGRLVGIITRKDLLK  104 (105)
T ss_pred             hccCC-------CceECCCCcHHHHHHHHHHcCCCEEEEE---ECCeEEEEEEhhhhhc
Confidence            77776       8899999999999999999999999999   4689999999999764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.95  E-value=2.1e-05  Score=70.63  Aligned_cols=74  Identities=12%  Similarity=0.326  Sum_probs=59.6

Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIRG  205 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~~  205 (208)
                      ...+++|+|++  ++.++++++++.++.+.|.+++.+.+||+|++  ++|+|+.+|+.+.+..........++++++.
T Consensus       445 ~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~  520 (574)
T PRK01862        445 RTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT  520 (574)
T ss_pred             hhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccC
Confidence            35689999988  78899999999999999999999999999875  9999999999986654322223455666654

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.95  E-value=4.3e-05  Score=55.41  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=44.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          143 KLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       143 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      ++.++++++++.+|++.|.+.+.+.+||+|++  ++|+||..|+++++...
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~   52 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTN   52 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhc
Confidence            57899999999999999999999999999874  99999999999988643

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.94  E-value=3.1e-05  Score=53.18  Aligned_cols=49  Identities=24%  Similarity=0.534  Sum_probs=44.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHh
Q 028491          143 KLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       143 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~  191 (208)
                      ++.++++++++.++.+.|.+++.+.+||++++ ++|+++..|+.+.+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~   51 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEG   51 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcc
Confidence            57789999999999999999999999999889 99999999999987543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.89  E-value=3.1e-05  Score=54.18  Aligned_cols=57  Identities=23%  Similarity=0.267  Sum_probs=48.2

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCc---EEEEEecCCCceEEEeechHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIG---SLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~---~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ...+++++|.+.       +.++.+++++.++.+.|.+++..   ..||+  +++++++|+|+..|+++
T Consensus        59 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv--~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDPD-------PLIVEADTPLEEVSRLATGRDSQNLYDGFIV--TEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCCC-------cEEecCCCCHHHHHHHHHcCCcccccccEEE--eeCCeEEEEEEHHHHhc
Confidence            356799999888       89999999999999999887753   44678  67899999999999764

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.88  E-value=3.4e-05  Score=53.67  Aligned_cols=52  Identities=29%  Similarity=0.454  Sum_probs=47.8

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHh-cCCcEEEEEecCCCc-eEEEeechHHH
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQ-HNIGSLVVLKPGEQQ-HIAGIFTERDY  118 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-~~~~~~pVv~~d~~~-~~iG~vt~~dl  118 (208)
                      .+.++|..+       +.++.++.++.++.+.|.+ +++..+||+  ++++ +++|+++..|+
T Consensus        63 ~v~~v~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~lpVv--~~~~~~lvGivt~~di  116 (117)
T COG0517          63 PVKEVMTKP-------VVTVDPDTPLEEALELMVERHKIRRLPVV--DDDGGKLVGIITLSDI  116 (117)
T ss_pred             cHHHhccCC-------cEEECCCCCHHHHHHHHHHHcCcCeEEEE--ECCCCeEEEEEEHHHc
Confidence            689999987       8999999999999999999 699999999  6775 99999999986

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.88  E-value=0.00011  Score=64.65  Aligned_cols=57  Identities=16%  Similarity=0.328  Sum_probs=52.7

Q ss_pred             cccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           56 NISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        56 ~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ..+++++|++  +       ++++.+++++.++.++|.+++...+||+  |++++++|+||.+||++.
T Consensus       158 ~~~V~diMt~~~~-------lvtv~~~~sl~eAl~lm~e~~i~~LPVV--d~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        158 STPVSEVMTPREK-------LVVGNTPISLEEANEVLRESRKGKLPIV--NDNGELVALVSRSDLKKN  216 (495)
T ss_pred             CCCHHHhhCCcCC-------ceEeCCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEehHhhhc
Confidence            4679999997  5       8999999999999999999999999999  788999999999998875

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.87  E-value=1.8e-05  Score=68.86  Aligned_cols=74  Identities=23%  Similarity=0.415  Sum_probs=66.6

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhcC
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIRGE  206 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~~~  206 (208)
                      .+.+.++++.  ++++|++..++.+|.+.|.+.|++.+.|++++  ..||||.+|+.+++.........+++++|..+
T Consensus       148 ~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p  223 (610)
T COG2905         148 LTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSP  223 (610)
T ss_pred             HHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccC
Confidence            3567888888  89999999999999999999999988888776  99999999999999998888888999888754

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.81  E-value=6.5e-05  Score=54.84  Aligned_cols=55  Identities=27%  Similarity=0.494  Sum_probs=49.2

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..++.++|.+.       +.++.+++++.++++.|.+++...+||+  ++ ++++|+|+..|++.
T Consensus        88 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTKK-------VITISPDASIEDAAELMVRHKIKRLPVV--ED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhhc
Confidence            45788899887       8999999999999999999999999999  55 89999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.81  E-value=7.3e-05  Score=51.01  Aligned_cols=53  Identities=30%  Similarity=0.510  Sum_probs=47.9

Q ss_pred             HHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        59 v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      +.++|..+       +.++.+++++.++.+.|.+.+...+||+  +++++++|+++..|+++
T Consensus        60 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTRD-------VVTVSPDTSLEEAAELMLEHGIRRLPVV--DDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcCC-------ceecCCCcCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHhhc
Confidence            66788777       8899999999999999999999999999  77899999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.81  E-value=0.00015  Score=61.80  Aligned_cols=110  Identities=11%  Similarity=0.076  Sum_probs=76.5

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      ..-++++++|.+.       ......+-+  -+++.   ++.+.++|+  |+     |+++..+...+ ...   .....
T Consensus       271 ~~~l~a~~~m~~~-------~~~~~~~~~--~~~~~---~~~~~~~~~--~~-----~~~~~~~~~~~-~~~---~~~~~  327 (382)
T TIGR03415       271 LNVLTARSLMRPL-------TDLEHVDGG--WCVSD---RRDTWLFTI--DK-----QVRRRDAKLPV-QAW---AAEQE  327 (382)
T ss_pred             ccceeHHHHhccc-------ccccccCcc--hhhhh---cccceeEee--cc-----ceecccchHhH-hhc---ccccc
Confidence            4456788888554       222222222  33333   788899999  44     88887775432 221   02335


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~  190 (208)
                      +.+ +..  ...++++++++.+++..+.+++. .++|+|++ ++|+|++.++++.+.+
T Consensus       328 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       328 VES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVENGRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             hhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeCCeEEEEEeHHHHHHHHhc
Confidence            666 444  58899999999999999998776 58888888 9999999999998853

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.75  E-value=5.1e-05  Score=61.39  Aligned_cols=56  Identities=23%  Similarity=0.380  Sum_probs=50.4

Q ss_pred             cchhhhhccCCC-eEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHH
Q 028491          132 TRVAEIMTDENK-LITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVV  189 (208)
Q Consensus       132 ~~v~~im~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~  189 (208)
                      .+++++|.+  + +.++++++++.++++.|.+.+.+.+||+|+ + ++|+|+..|+.+.+.
T Consensus       155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL  213 (268)
T ss_pred             hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence            578899987  6 899999999999999999999999999986 4 999999999998654

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.72  E-value=0.00011  Score=50.32  Aligned_cols=54  Identities=28%  Similarity=0.364  Sum_probs=47.3

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ..+.++|.+.       +.++.+++++.++.+.|.+++...+||+  + +++++|+++..|++.
T Consensus        52 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d-~~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTRD-------PPTVSPDDDVKEAAKLMVENNIRRVPVV--D-DGKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcCC-------CceECCCCCHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHhhc
Confidence            3577888877       8889999999999999999999999999  4 479999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.70  E-value=9e-05  Score=64.57  Aligned_cols=58  Identities=22%  Similarity=0.400  Sum_probs=53.0

Q ss_pred             cccHHHhhcc-cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491           56 NISVAEVLMT-KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI  122 (208)
Q Consensus        56 ~~~v~~~m~~-~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~  122 (208)
                      ..+++++|++ +       ++++++++++.++.+.|.+++...+||+  |++++++|+||..||++.+
T Consensus       142 ~~~V~dvm~~~~-------~~~V~~~~sl~eal~~m~~~~~~~lpVV--De~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTREE-------VITVPEGIDLEEALKVLHEHRIEKLPVV--DKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCCCC-------CEEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEhHHhhhcc
Confidence            4578999984 6       8999999999999999999999999999  8999999999999998764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.00013  Score=63.16  Aligned_cols=61  Identities=16%  Similarity=0.260  Sum_probs=55.7

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      -+...++++|.+.       ++++.+++..+++++++++++...+|||  |++++++|+||..|++.-+-
T Consensus       193 ~~~~~i~~im~~~-------~~~V~~~~dqeevA~~~~~ydl~a~PVV--d~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         193 EPDELLKDLMEDD-------VVSVLADDDQEEVARLFEKYDLLAVPVV--DEDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             CcHhHHHHHhccc-------ceeecccCCHHHHHHHHHHhCCeecceE--CCCCceeeeeeHHHHHHHHH
Confidence            3467889999998       9999999999999999999999999999  89999999999999887543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.39  E-value=0.00055  Score=58.02  Aligned_cols=57  Identities=18%  Similarity=0.359  Sum_probs=49.3

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ++.+.+.+.       +.++.+++++.+++..|.+++.. +||+  |++|+++|+|+..++++++..
T Consensus       303 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       303 GLQDVLIDD-------IYTVDAGTLLRETVRKVLKAGIK-VPVV--DEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             chhhhhccC-------CceECCCCcHHHHHHHHHhCCCC-EEEE--CCCCcEEEEEEHHHHHHHHHh
Confidence            355666655       78899999999999999999988 9999  889999999999999887643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.0014  Score=59.17  Aligned_cols=110  Identities=12%  Similarity=0.078  Sum_probs=72.2

Q ss_pred             hhhhhhhhhhHHHHHHhhhcCcccc-ccc-ccccc--cccccCCCCCccccCcccccHHHhhcccCCCCCCCeEEecCCc
Q 028491            6 KGVRTCQEILKGAILEHHQGRYVVE-GRK-TCSRF--GCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDD   81 (208)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~   81 (208)
                      |+..+...++|-.++..+.+.-..+ ..- +...+  .+....-..+-.+....++.|+++|-++       +.++..++
T Consensus       533 ElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~d-------v~yI~k~~  605 (931)
T KOG0476|consen  533 ELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTD-------VKYITKDT  605 (931)
T ss_pred             eeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeecccc-------ceeeeccC
Confidence            4455666777777776665422211 111 11111  1111100011222336678999999999       99999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491           82 TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI  122 (208)
Q Consensus        82 tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~  122 (208)
                      |..|..+.+..+....+|+|++-++.-++|.|.++.|...+
T Consensus       606 Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  606 TYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             cHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            99999999987779999999765667899999999976544

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00066  Score=55.85  Aligned_cols=112  Identities=14%  Similarity=0.228  Sum_probs=82.3

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      ..-.+++++|.+. ..    ...-.+...-..+...+.......+.++  +..++.+|+++..++..+            
T Consensus       271 ~~VltA~~IM~~~-~~----~~~~~~~~~~~~al~~~~~~~~~~~~~~--~~~~~~~g~v~~~~~~~~------------  331 (386)
T COG4175         271 SRVLTAKDIMRRP-DL----LIRKTPGDGPRVALKLLRDEGREYGYAV--DRGNKFVGVVSIDSLVKA------------  331 (386)
T ss_pred             hheeeHHHhhccc-cc----ccccccccccchhhhhhhhccchhhHHH--hccCceeeEEeccchhcc------------
Confidence            4456778888852 11    1222223333457778888777777888  667779999999986542            


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                         .+..  ++.++++++++.+.+....+.+. .++|+|++  ++|+|++..++.++..
T Consensus       332 ---~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 ---ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ---cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence               3444  68899999999999999998877 57888876  9999999999998864

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.07  E-value=0.002  Score=55.32  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=49.2

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG  126 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~  126 (208)
                      .+++.+.+.       ..++++++++.+++..+.+.... +||+  |++|+++|+|+..++++.+...+
T Consensus       338 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~~~~~~~~~~~~~~~  396 (400)
T PRK10070        338 GLDAALIDA-------PLAVDAQTPLSELLSHVGQAPCA-VPVV--DEDQQYVGIISKGMLLRALDREG  396 (400)
T ss_pred             chhhhhccC-------CceeCCCCCHHHHHHHHHhCCCc-EEEE--CCCCcEEEEEEHHHHHHHHHhcC
Confidence            345555555       78899999999999999987766 9999  88999999999999998875544

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=96.50  E-value=0.0012  Score=51.82  Aligned_cols=62  Identities=19%  Similarity=0.359  Sum_probs=56.5

Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHHHHHHh
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~~~~~~  191 (208)
                      .+..|+++|.++....++..+.++.+.+..+.++..++.||+.++   +.|++-.+|+++++...
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~  129 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD  129 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC
Confidence            356799999988889999999999999999999999999999776   99999999999998654

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=96.33  E-value=0.007  Score=53.38  Aligned_cols=127  Identities=17%  Similarity=0.248  Sum_probs=94.5

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHH-HHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVE-DAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~-~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +....++++|++-.+     +.....+..+. +........+++.+||.+. +....+|..-...++. +..........
T Consensus       201 l~ek~~~evmtpi~~-----~f~l~~n~~l~~~~~~~i~~~g~sripv~~~-~~~~~i~~~L~~~~~~-~~~~~~~~~~~  273 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIED-----VFALDANTKLDRETVGEIVKHGYSRIPVYEQ-EPKNKIGGLLVMNLLR-LLQVEVPLEPL  273 (498)
T ss_pred             HHHHHHHHhccchhh-----heeeccccccchHHHhhHhhcCcceeeeccC-cccchhhHHHHhhhhh-hhccccccccc
Confidence            567889999999855     78888888887 4555556899999999953 3334444433344333 33222244567


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~  190 (208)
                      ++++.+..  ....++.++++.+.++.|.+.+.|.+.|.++. -+|+++..|+ ....+
T Consensus       274 ~v~~~~~~--~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l~~~-~~~~~  329 (498)
T KOG2118|consen  274 PVSESALL--RLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTLEDL-EEVVK  329 (498)
T ss_pred             cchhhhcc--ccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEeccch-hhhcc
Confidence            88888887  79999999999999999999999888888866 9999999998 55543

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.30  E-value=0.0052  Score=54.59  Aligned_cols=55  Identities=16%  Similarity=0.258  Sum_probs=49.6

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      .....+|++.       +.++.+++++..+..++++-+..++.|+  ++.++.+|++|++|+++
T Consensus       690 vDl~p~~n~s-------PytV~~~mSl~k~~~lFR~lGLRhLlVv--~~~~~~~gilTR~D~~~  744 (762)
T KOG0474|consen  690 VDLHPFMNPS-------PYTVPETMSLAKAFILFRQLGLRHLLVV--PKTNRVVGILTRKDLAR  744 (762)
T ss_pred             cccccccCCC-------CcccCcccchHHHHHHHHHhcceeEEEe--cCCCceeEEEehhhhhh
Confidence            4556788888       9999999999999999999999999999  77888899999999874

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.61  E-value=0.017  Score=49.06  Aligned_cols=57  Identities=14%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ...+.++|++.       .++.+.+-++.++-+.+.+++-..+|||  +++++++.++++.||.+.
T Consensus       170 ~~~~~~vmt~~-------~~~~~~gi~l~~~neiL~~~kkGkl~iv--~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  170 SLLVSDVMTKN-------PVTGAQGITLKEANEILKKIKKGKLPVV--DDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             cchhhhhcccc-------cccccccccHHHHHHHHHhhhcCCccee--ccCCceeeeeehhhhhhh
Confidence            45678999998       8999999999999999999999999999  899999999999998764

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.24  E-value=0.051  Score=46.46  Aligned_cols=46  Identities=9%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ..++++++++.+++..+.+.+.. ++|+  |+ |+++|+|+..+++.++.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       335 PTVINPDTLMRDVLAARHRTGGA-ILLV--EN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             CcccCCCCcHHHHHHHHhcCCCC-eEEe--eC-CeEEEEEeHHHHHHHHh
Confidence            77899999999999998887654 7888  55 99999999999998753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.74  E-value=0.12  Score=46.30  Aligned_cols=56  Identities=18%  Similarity=0.310  Sum_probs=50.8

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ....+++|...       +.++...++..-+++++++-+...+.|.   ++|++.|+||.+|+++.
T Consensus       638 ~~~lk~il~~t-------p~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  638 RLDLKDILDMT-------PFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRH  693 (696)
T ss_pred             CcCceeeccCC-------cccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHh
Confidence            56678888888       9999999999999999999999999998   78999999999998874

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=92.85  E-value=0.16  Score=46.46  Aligned_cols=61  Identities=11%  Similarity=0.270  Sum_probs=53.8

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc----eeEEEEHHHHHHHHHHhhH
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR----IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~----~vGiit~~dll~~~~~~~~  193 (208)
                      ...|+++|.+  ++..+..+++..+.-+.+....++.+|+|++.    ++|.|.++.+...+..+..
T Consensus       587 ~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig  651 (931)
T KOG0476|consen  587 TVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG  651 (931)
T ss_pred             EEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence            4578899998  89999999999999998888779999999864    9999999999999987543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=92.23  E-value=0.26  Score=39.79  Aligned_cols=62  Identities=21%  Similarity=0.143  Sum_probs=45.4

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      +...++.+.|.+.....   --.+.....-.+++..+...+.+.+||+  |++|+++|.+|..+|+.
T Consensus       246 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ls~~~~~~~~~~~Vv--d~~g~~~G~vt~~~l~~  307 (309)
T COG1125         246 LSLVSVADAVRRGEPAD---GEPLLEGFVDRDALSDFLARGRSVLPVV--DEDGRPLGTVTRADLLD  307 (309)
T ss_pred             cchhhHHHhhccccccc---CCccccchhhHHHHHHHHhcCCceeEEE--CCCCcEeeEEEHHHHhh
Confidence            55677888887752110   1123345555667888888899999999  89999999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.71  E-value=1.6  Score=35.36  Aligned_cols=97  Identities=18%  Similarity=0.230  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH--------HHhcC----CCCCccchhhhhccCC--CeEEEc
Q 028491           83 VEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK--------IVGQG----RSPKYTRVAEIMTDEN--KLITLP  148 (208)
Q Consensus        83 l~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~--------~~~~~----~~~~~~~v~~im~~~~--~~~~v~  148 (208)
                      +.||+++-     +.+.|.   ++|+++-+=+..+|+..        ++...    .......+.+.|....  .--.+.
T Consensus       196 idEA~kLa-----dri~vm---~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  267 (309)
T COG1125         196 IDEALKLA-----DRIAVM---DAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLL  267 (309)
T ss_pred             HHHHHhhh-----ceEEEe---cCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccc
Confidence            44555543     345666   46889989897776643        22222    1112334555554410  011122


Q ss_pred             CCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHH
Q 028491          149 SDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRA  187 (208)
Q Consensus       149 ~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~  187 (208)
                      ......+++..+...+...+||+|++  ++|.||..+++..
T Consensus       268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         268 EGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            33455668888888999999999987  9999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=90.81  E-value=0.72  Score=38.48  Aligned_cols=47  Identities=17%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      +.++..++++.+.+..+.+... .++|+  |++++++|+++...++.++.
T Consensus       337 ~~~v~~d~~~~~~~~~~~~~~~-p~aVv--de~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         337 VLTVDADTPLSEILARIRQAPC-PVAVV--DEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             ccccCccchHHHHHHHHhcCCC-ceeEE--cCCCcEEEEecHHHHHHHHh
Confidence            6788999999999999877654 57899  89999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		3e-22
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		1e-13
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		3e-11
2ef7_A	133	Crystal Structure Of St2348, A Hypothetical Protein		9e-10
1xkf_A	133	Crystal Structure Of Hypoxic Response Protein I (Hr		9e-08
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		2e-07
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		5e-07
3ghd_A	70	Crystal Structure Of A Cystathionine Beta-Synthase		6e-06
1y5h_A	133	Crystal Structure Of Truncated Se-Met Hypoxic Respo		8e-06

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 7/154 (4%)
Query: 53  GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGI 112
           G  + +VA++L  K D     +   + +D V DA+K MA+  IG+L+V+   +   IAGI
Sbjct: 3   GSMSTTVAQILKAKPDSGRTIYTVTK-NDFVYDAIKLMAEKGIGALLVV---DGDDIAGI 58
Query: 113 FTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID 172
            TERDY RK+V Q RS K TRV EIMT + + +  PS +     M LMT+  +RH+PV+D
Sbjct: 59  VTERDYARKVVLQERSSKATRVEEIMTAKVRYVE-PSQSTD-ECMALMTEHRMRHLPVLD 116
Query: 173 -GRIVGMISIVDVVRAVVEQQKGELKRLNEFIRG 205
            G+++G+ISI D+V++V+  Q+  + +L  +I G
Sbjct: 117 GGKLIGLISIGDLVKSVIADQQFTISQLEHYIHG 150

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 6/115 (5%)
Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
           DD+V +A++ MA  NIG+L+V+K    + + GI TERD+ RK     +  K T+V EIMT
Sbjct: 25  DDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMT 81
Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRAVVEQQK 193
            +   + L +       M L+T+  +RH+PV+ DG+++G++SI D+V+  + Q +
Sbjct: 82  RQVAYVDLNNTNE--DCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Query: 59  VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
           V ++L  KG D V        D ++ +A   +  H IG++VV        + GIFTERD 
Sbjct: 26  VKDLLDRKGRDVV----TVGPDVSIGEAAGTLHAHKIGAVVVTDA--DGVVLGIFTERDL 79
Query: 119 LRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPV-IDGRIVG 177
           ++ + GQG +     V+  MT    ++    ++     M++MT    RHVPV  +GR+ G
Sbjct: 80  VKAVAGQGAASLQQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAG 137
Query: 178 MISIVDVVRAVVEQQKGELKRLNEFIRG 205
           +ISI DVV+A + + + E + +  +I G
Sbjct: 138 IISIGDVVKARIGEIEAEAEHIKAYIAG 165

>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With Cbs Domains From Sulfolobus Tokodaii Strain7 Length = 133

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 15/119 (12%)
Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVL---KPGEQQHIAGIFTERDYLRKIVGQGRSPKY 131
           +    D  + D  K   + NIGS++V+   KP       GI TERD + K +G+G+S + 
Sbjct: 15  ISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKP------VGIITERDIV-KAIGKGKSLE- 66
Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           T+  E  T    LIT+  D+ I  A+ L    +IRH+PV+D  G + G+ISI D+ RA+
Sbjct: 67  TKAEEFXT--ASLITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123

>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi) With Two Coordinated Zinc Ions Length = 133

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 64  MTKGDDKVGSWLCCRSD-DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122
           MT   D + + + C  + +T+  A + M +H+IG+L +   G+   + G+ T+RD + K 
Sbjct: 7   MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKG 64
Query: 123 VGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISI 181
           +  G  P      E+  D   +  + ++A+I   + +M +  +R VPVI + R+VG+++ 
Sbjct: 65  LAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTE 122
Query: 182 VDVVRAVVEQ 191
            D+ R + E 
Sbjct: 123 ADIARHLPEH 132

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 20/129 (15%)
Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +    D+TV+ A+  M +H I  L V+   E + + GI T++D   +   +G+      V
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVV---EDEKVVGIITKKDIAAR---EGK-----LV 152
Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVV-----RA 187
            E+MT E  +IT+P    +  A+++M +  I  +PV+D  G++VG+I++ D+V     + 
Sbjct: 153 KELMTKE--VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN 210
Query: 188 VVEQQKGEL 196
            V  + GEL
Sbjct: 211 AVRDENGEL 219

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 12/117 (10%)
Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY-LRKIVGQGRSPKYTR 133
           +    D TV++A+  MA++ IG L V+   E+  + G+ T RD    K + +       +
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRDVRFEKNLSK-------K 156
Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI--DGRIVGMISIVDVVRAV 188
           + ++MT   KLI  P D ++  A +++    I  +P++  D ++VG+I+I D++  +
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213

>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain Protein Fused To A Zn-Ribbon-Like Domain Length = 70

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +  +  DTV+   K ++++  GS VV    E   I G+ TERD L K+V +G++PK  +V
Sbjct: 3   IVVQPKDTVDRVAKILSRNKAGSAVVX---EGDEILGVVTERDILDKVVAKGKNPKEVKV 59
Query: 135 AEIMT 139
            EI T
Sbjct: 60  EEIXT 64

>pdb|1Y5H|A Chain A, Crystal Structure Of Truncated Se-Met Hypoxic Response Protein I (Hrpi) Length = 133

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
           C    +T+  A +   +H+IG+L +   G+   + G  T+RD + K +  G  P      
Sbjct: 20  CVGEHETLTAAAQYXREHDIGALPIC--GDDDRLHGXLTDRDIVIKGLAAGLDPNTATAG 77
Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRAVVEQ 191
           E+  D   +  + ++A+I   + +  +  +R VPVI + R+VG+++  D+ R + E 
Sbjct: 78  ELARD--SIYYVDANASIQEXLNVXEEHQVRRVPVISEHRLVGIVTEADIARHLPEH 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
4fry_A	157	Putative signal-transduction protein with CBS DOM;	6e-48
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-46
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-43
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-39
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-37
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-36
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-34
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-11
1pvm_A	184	Conserved hypothetical protein TA0289; structural	7e-34
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-33
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-11
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-32
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-11
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-29
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	9e-26
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	8e-25
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	9e-12
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	7e-24
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-11
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-22
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	8e-04
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-21
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	8e-08
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	8e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-21
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	5e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-21
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-20
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-19
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-20
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-19
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-19
3fio_A	70	A cystathionine beta-synthase domain protein fused	3e-20
3fio_A	70	A cystathionine beta-synthase domain protein fused	7e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-20
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-14
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-20
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-16
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-14
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	9e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-19
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-07
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-18
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-12
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	7e-18
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-12
1vr9_A	213	CBS domain protein/ACT domain protein; structural	9e-18
1vr9_A	213	CBS domain protein/ACT domain protein; structural	9e-09
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-17
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-17
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-14
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-09
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-17
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	9e-12
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-16
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-16
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	6e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-07
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-04
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-15
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	8e-14
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	3e-13
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	3e-13
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	8e-13
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	1e-12
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	2e-12
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-12
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	9e-12
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	3e-07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	6e-07
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	1e-04
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	2e-04
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	3e-04
2oux_A	286	Magnesium transporter; 10001B, structural genomics	4e-04

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  153 bits (389), Expect = 6e-48
 Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 7/155 (4%)

Query: 52  KGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAG 111
            G  + +VA++L  K  D   +      +D V DA+K MA+  IG+L+V+   +   IAG
Sbjct: 2   PGSMSTTVAQILKAK-PDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57

Query: 112 IFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI 171
           I TERDY RK+V Q RS K TRV EIMT   K+  +    +    M LMT+  +RH+PV+
Sbjct: 58  IVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVL 115

Query: 172 D-GRIVGMISIVDVVRAVVEQQKGELKRLNEFIRG 205
           D G+++G+ISI D+V++V+  Q+  + +L  +I G
Sbjct: 116 DGGKLIGLISIGDLVKSVIADQQFTISQLEHYIHG 150

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  150 bits (380), Expect = 1e-46
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 9/148 (6%)

Query: 59  VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
           V ++L  KG D     +    D ++ +A   +  H IG++VV        + GIFTERD 
Sbjct: 26  VKDLLDRKGRD----VVTVGPDVSIGEAAGTLHAHKIGAVVVT--DADGVVLGIFTERDL 79

Query: 119 LRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVG 177
           ++ + GQG +     V+  MT    ++    ++     M++MT    RHVPV + GR+ G
Sbjct: 80  VKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAG 137

Query: 178 MISIVDVVRAVVEQQKGELKRLNEFIRG 205
           +ISI DVV+A + + + E + +  +I G
Sbjct: 138 IISIGDVVKARIGEIEAEAEHIKAYIAG 165

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  141 bits (357), Expect = 2e-43
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 10/136 (7%)

Query: 59  VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
           V  +L  KG   V        DD+V +A++ MA  NIG+L+V+K  +   + GI TERD+
Sbjct: 8   VKHLLQEKGHTVV----AIGPDDSVFNAMQKMAADNIGALLVMKDEK---LVGILTERDF 60

Query: 119 LRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVG 177
            RK     +  K T+V EIMT   ++  +  +      M L+T+  +RH+PV+D G+++G
Sbjct: 61  SRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIG 118

Query: 178 MISIVDVVRAVVEQQK 193
           ++SI D+V+  + Q +
Sbjct: 119 LLSIGDLVKDAISQHQ 134

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score =  131 bits (332), Expect = 1e-39
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
           C    +T+  A + M +H+IG+L +   G+   + G+ T+RD + K +  G  P      
Sbjct: 20  CVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTATAG 77

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQ 191
           E+  D   +  + ++A+I   + +M +  +R VPVI   R+VG+++  D+ R + E 
Sbjct: 78  ELARDS--IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPEH 132

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  125 bits (315), Expect = 4e-37
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 13/137 (9%)

Query: 56  NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTE 115
              +    MTK   K+   L  +   +V++A + M + ++GSLVV+   +  ++ G FT+
Sbjct: 6   KAPIKV-YMTK---KL---LGVKPSTSVQEASRLMMEFDVGSLVVIN--DDGNVVGFFTK 56

Query: 116 RDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GR 174
            D +R+++  G       V  IMT    LIT   +  +   ++ M +  I+H+ + + G+
Sbjct: 57  SDIIRRVIVPGLPYD-IPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHILIEEEGK 113

Query: 175 IVGMISIVDVVRAVVEQ 191
           IVG+ ++ D++ A   +
Sbjct: 114 IVGIFTLSDLLEASRRR 130

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score =  123 bits (311), Expect = 2e-36
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +      T+ +    +A++ +G  V+      +    + +ERD + + V Q         
Sbjct: 16  VSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERD-ILRAVAQRLDLD-GPA 73

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQ 192
             I       IT+     +  A + M   +IRHV V++  G +VG++SI D+        
Sbjct: 74  MPIAN---SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILL 130

Query: 193 KGELKRL 199
           +     +
Sbjct: 131 ELATAEV 137

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score =  118 bits (297), Expect = 2e-34
 Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 16/144 (11%)

Query: 54  LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIF 113
           +E   V E  M     +V   +    D  + D  K M + NIGS++V+   +     GI 
Sbjct: 1   MEEEIVKEY-MKT---QV---ISVTKDAKLNDIAKVMTEKNIGSVIVV---DGNKPVGII 50

Query: 114 TERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID- 172
           TERD + K +G+G+S + T+  E MT    LIT+  D+ I  A+ LM   +IRH+PV+D 
Sbjct: 51  TERD-IVKAIGKGKSLE-TKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDD 106

Query: 173 -GRIVGMISIVDVVRAVVEQQKGE 195
            G + G+ISI D+ RA+ +  +  
Sbjct: 107 KGNLKGIISIRDITRAIDDMFETM 130

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVE 190
             V E M  +  +I++  DA +    ++MT+K+I  V V+D  + VG+I+  D+V+A+ +
Sbjct: 4   EIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK 61

Query: 191 QQKGELK 197
            +  E K
Sbjct: 62  GKSLETK 68

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  118 bits (297), Expect = 7e-34
 Identities = 25/128 (19%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
               + TV DAVK M ++++  LVV    +  +  G+ +ER  +++ + + + P    + 
Sbjct: 21  TVNWNTTVFDAVKIMNENHLYGLVVKD--DNGNDVGLLSERSIIKRFIPRNKKPDEVPIR 78

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
            +M     +  + SD ++      +++  +    V+D  GR+VG++++ D+ R +     
Sbjct: 79  LVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASI 136

Query: 194 GELKRLNE 201
            ++   + 
Sbjct: 137 TDILLSHR 144

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score =  116 bits (292), Expect = 1e-33
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
                 ++ED ++N  ++  GS VV+K G      GI T  D + + + +G      +V 
Sbjct: 13  TIDITASLEDVLRNYVENAKGSSVVVKEGV---RVGIVTTWD-VLEAIAEGDDLAEVKVW 68

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRAVVEQQ 192
           E+M     L+T+   A I  A + M    +  + V  D  I+G+IS  D++RA + ++
Sbjct: 69  EVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAKR 124

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQ 191
           RV ++M     + T+   A++   ++   +       V+  G  VG+++  DV+ A+ E 
Sbjct: 2   RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG 59

Query: 192 QK 193
             
Sbjct: 60  DD 61

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score =  114 bits (287), Expect = 1e-32
 Identities = 24/148 (16%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 54  LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIF 113
           L+ + V +   +         +    + +V DA+  M   ++G+L V+       + G+ 
Sbjct: 14  LKKLQVKDF-QSIP-------VVIHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVL 63

Query: 114 TERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID- 172
           + +D L +     +      V  IMT    +     +  ++   + + +K I  +PVI  
Sbjct: 64  SRKD-LLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD 122

Query: 173 ----GRIVGMISIVDVVRAVVEQQKGEL 196
                 ++G ++  ++ + +V   + E+
Sbjct: 123 TDKGFEVIGRVTKTNMTKILVSLSENEI 150

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 114 TERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID- 172
           T +   + +       K  +V +  +     + +  + ++  A+  M  + +  + V+D 
Sbjct: 2   TGKTGTQLLA---DKLKKLQVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDR 55

Query: 173 -GRIVGMISIVDVVRAVVEQQKGELKRLNEF 202
              +VG++S  D++RA + QQ+     ++  
Sbjct: 56  DAVLVGVLSRKDLLRASIGQQELTSVPVHII 86

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score =  105 bits (265), Expect = 5e-29
 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 37/166 (22%)

Query: 56  NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTE 115
             +V +  MT   +        +   +V+DA++ + +  +  L V+   +   + G+ ++
Sbjct: 3   GYTVGDF-MTPRQNLH----VVKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSD 55

Query: 116 RDYLRKIVGQGRSPKY--------------------------TRVAEIMTDENKLITLPS 149
            D L      GRS                               V ++MT     + +  
Sbjct: 56  YDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPS--PLVVRD 113

Query: 150 DANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
             N+  A +L+ +   R +PV+D  G+++G+++  +VVRA ++ ++
Sbjct: 114 STNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKR 159

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 96.1 bits (240), Expect = 9e-26
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
           C+    V D ++ + Q  + S+ ++   E  ++  ++   D L  I G   +     V E
Sbjct: 24  CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGE 81

Query: 137 IMT----DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVV 189
            +     D   + T   +  +   M  +    +    V+D  GR+VG++++ D+++ ++
Sbjct: 82  ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 93.5 bits (233), Expect = 8e-25
 Identities = 41/144 (28%), Positives = 78/144 (54%), Gaps = 19/144 (13%)

Query: 54  LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIF 113
           L+NI V +V MTK    V   +  +  + V +A + M ++ I SL V+   ++  + GI 
Sbjct: 5   LKNIKVKDV-MTK---NV---ITAKRHEGVVEAFEKMLKYKISSLPVID--DENKVIGIV 55

Query: 114 TERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMT-----DKHIRHV 168
           T  D +   + + +    T + ++MT +  +IT+  DA+IL A++ M      ++ I  +
Sbjct: 56  TTTD-IGYNLIRDKYTLETTIGDVMTKD--VITIHEDASILEAIKKMDISGKKEEIINQL 112

Query: 169 PVID--GRIVGMISIVDVVRAVVE 190
           PV+D   ++VG+IS  D++R + +
Sbjct: 113 PVVDKNNKLVGIISDGDIIRTISK 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 59.2 bits (144), Expect = 9e-12
 Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 127 RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDV 184
            + K  +V ++MT    +IT      ++ A + M    I  +PVID   +++G+++  D+
Sbjct: 3   DTLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDI 60

Query: 185 VRAVVEQQKGELKRLNEF 202
              ++  +      + + 
Sbjct: 61  GYNLIRDKYTLETTIGDV 78

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 91.6 bits (228), Expect = 7e-24
 Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 21/134 (15%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKY---- 131
               D  +E+ V  + +  +   V +       + G+      L+               
Sbjct: 28  VVEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKVSGFHFFGFIPKEEL 85

Query: 132 ----------TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMI 179
                        +EIM D    + +  D  +  A++LM D +I+ +PV+D  G IVG +
Sbjct: 86  IRSSMKRLIAKNASEIMLDP---VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 142

Query: 180 SIVDVVRAVVEQQK 193
           + ++++ A+ + ++
Sbjct: 143 NSLEILLALWKGRE 156

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 9/75 (12%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           K   V ++++ +     +  D  I   +  + +  +     +    ++VGMI ++ +++ 
Sbjct: 14  KVKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV 71

Query: 188 VVEQQKGELKRLNEF 202
                 G + +    
Sbjct: 72  SGFHFFGFIPKEELI 86

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 87.4 bits (217), Expect = 3e-22
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR-------KIVGQGRS 128
                 T+ DA   M   +I  + ++     + + GI ++RD L        +       
Sbjct: 17  TLLRTHTLNDAKHLMEALDIRHVPIVD--ANKKLLGIVSQRDLLAAQESSLQRSAQGDSL 74

Query: 129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRA 187
              T + E+M     + ++   A +  +   M    I  +PV+    +VG+I+  D V  
Sbjct: 75  AFETPLFEVMH--TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTI 132

Query: 188 VVE 190
            + 
Sbjct: 133 AIN 135

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           +V ++MT      TL     +  A  LM    IRHVP++D   +++G++S  D++ A 
Sbjct: 6   KVEDMMTRH--PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQ 61

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 37  RFGCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIG 96
                 S   S   +       + EV M      V           ++++   M +H IG
Sbjct: 58  LAAQESSLQRSAQGDSLAFETPLFEV-MHT---DV---TSVAPQAGLKESAIYMQKHKIG 110

Query: 97  SLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
            L V+    +  + GI T+ D++   +      + +   E+  ++
Sbjct: 111 CLPVV---AKDVLVGIITDSDFVTIAINLLELQEESEPDELDEEQ 152

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 84.5 bits (210), Expect = 2e-21
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 11/119 (9%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
              S+ ++ +A K + +HNI  L ++   E   + GI T  D + K + Q +      + 
Sbjct: 13  TAHSNISIMEAAKILIKHNINHLPIVD--EHGKLVGIITSWD-IAKALAQNKKT----IE 65

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQ 192
           EIMT    +IT   D  + H    M+  +I  VPV+D   R+VG+++  D+ R    ++
Sbjct: 66  EIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGKK 122

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 56.8 bits (138), Expect = 5e-11
 Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVV 189
           T V +I++     IT  S+ +I+ A +++   +I H+P++D  G++VG+I+  D+ +A+ 
Sbjct: 1   TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA 58

Query: 190 EQQK 193
           + +K
Sbjct: 59  QNKK 62

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 87.5 bits (217), Expect = 4e-21
 Identities = 20/130 (15%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
             + +  +++A++     N+G   ++   ++  +  + TERD +R ++ +    +   + 
Sbjct: 96  TLKENADIDEAIETFLTKNVGGAPIVN--DENQLISLITERDVIRALLDKIDENE--VID 151

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQQKG 194
           + +T +  +I       +    + M     R +PV+  GR+VG+I+  D ++ +      
Sbjct: 152 DYITRD--VIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAF 209

Query: 195 ELKRLNEFIR 204
              +      
Sbjct: 210 NHMQTGNVRE 219

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 84.0 bits (208), Expect = 7e-20
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI----------VGQ 125
                + ++D  + M ++    L V+  G    + GI T  D+++ +           G 
Sbjct: 160 VATPGERLKDVARTMVRNGFRRLPVVSEG---RLVGIITSTDFIKLLGSDWAFNHMQTGN 216

Query: 126 GRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVD 183
            R     R+ EIM  +  +IT      +    ++M    I  +PV+D   RI G+I+  D
Sbjct: 217 VREITNVRMEEIMKRD--VITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKD 274

Query: 184 VVRA 187
           V++ 
Sbjct: 275 VLKY 278

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKY---- 131
                 T+  A+  M ++    L V+  G  + + GI T  D +  + G  +        
Sbjct: 16  TVYPTTTIRKALMTMNENKYRRLPVVNAGNNK-VVGIITSMDIVDFMGGGSKYNLIREKH 74

Query: 132 ---------TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMIS 180
                      V EIM +   +ITL  +A+I  A++    K++   P+++   +++ +I+
Sbjct: 75  ERNFLAAINEPVREIMEEN--VITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLIT 132

Query: 181 IVDVVRAVVEQQKGELK 197
             DV+RA++++      
Sbjct: 133 ERDVIRALLDKIDENEV 149

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMISIVDVVRAVV 189
            +        K++T+     I  A+  M +   R +PV++    ++VG+I+ +D+V  + 
Sbjct: 5   VMKIAQNK--KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMG 62

Query: 190 EQQKGELKR 198
              K  L R
Sbjct: 63  GGSKYNLIR 71

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 42  ISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVL 101
             +       + + N+ + E+ M +        +  +  D ++   + M  ++IG+L V+
Sbjct: 208 AFNHMQTGNVREITNVRMEEI-MKRDV------ITAKEGDKLKKIAEIMVTNDIGALPVV 260

Query: 102 KPGEQQHIAGIFTERDYLRKI 122
              E   I GI TE+D L+  
Sbjct: 261 D--ENLRIKGIITEKDVLKYF 279

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 86.4 bits (214), Expect = 1e-20
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 16/149 (10%)

Query: 44  SSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKP 103
            S S  +   +    + +  MT   + V       +      A+  M   N GSL V+  
Sbjct: 80  DSCSQGDLYHISTTPIIDY-MTP--NPV----TVYNTSDEFTAINIMVTRNFGSLPVVD- 131

Query: 104 GEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDK 163
                  GI TER++L          +   V   M+   K+ T+  +  +  A++LM  +
Sbjct: 132 -INDKPVGIVTEREFLLLYKDL---DEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRR 185

Query: 164 HIRHVPVID--GRIVGMISIVDVVRAVVE 190
             R +PVID   ++VG++++V+ ++ + +
Sbjct: 186 GFRRLPVIDDDNKVVGIVTVVNAIKQLAK 214

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 82.1 bits (203), Expect = 4e-19
 Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 24/155 (15%)

Query: 50  EEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHI 109
           E    + +++  + M K             +D +  A K + +  IG ++V      + I
Sbjct: 13  ENLYFQGMNIETL-MIK---NP---PILSKEDRLGSAFKKINEGGIGRIIVAN----EKI 61

Query: 110 AGIFTERDYLRKIVGQGRSPKY---------TRVAEIMTDENKLITLPSDANILHAMQLM 160
            G+ T RD L  +    +             T + + MT     +T+ + ++   A+ +M
Sbjct: 62  EGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPN--PVTVYNTSDEFTAINIM 119

Query: 161 TDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
             ++   +PV+D   + VG+++  + +    +  +
Sbjct: 120 VTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDE 154

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 81.3 bits (201), Expect = 7e-19
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV-----GQGRSPK 130
               +  ++ AVK M +     L V+   +   + GI T  + ++++             
Sbjct: 168 TIYKEVRLDQAVKLMLRRGFRRLPVID--DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFY 225

Query: 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
              V ++M     L+T+   A++  A   M  K I  + +++    I G+I+  D++ A+
Sbjct: 226 GKVVKDVMVTN--LVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIAL 283

Query: 189 VEQ 191
              
Sbjct: 284 HHI 286

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 85.4 bits (211), Expect = 4e-20
 Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
            C+    V D ++ + Q  + S+ ++   E  ++  ++   D L  I G   +     V 
Sbjct: 202 SCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVG 259

Query: 136 EIMT----DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVV 189
           E +     D   + T   +  +   M  +    +    V+D  GR+VG++++ D+++ ++
Sbjct: 260 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 319

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 68.1 bits (166), Expect = 7e-14
 Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 11/140 (7%)

Query: 74  WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ---QHIAGIFTERDYLR----KIVGQG 126
                    + +A   M +   G + ++   E+   + +  + T+   L+          
Sbjct: 124 TASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETH 183

Query: 127 RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDV 184
                     I+T +N + +      ++  +Q++T   +  VP+ID  G ++ +    DV
Sbjct: 184 FLKIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 242

Query: 185 VRAVVEQQKGEL-KRLNEFI 203
           +  +      +L   + E +
Sbjct: 243 LGLIKGGIYNDLSLSVGEAL 262

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 60.0 bits (145), Expect = 4e-11
 Identities = 16/130 (12%), Positives = 46/130 (35%), Gaps = 21/130 (16%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137
            +   V+ ++  + Q++I S  +      +  AG+ T  D++  I     +P    + + 
Sbjct: 46  DTSLLVKKSLNVLLQNSIVSAPLWDSKTSR-FAGLLTTTDFINVIQYYFSNPDKFELVDK 104

Query: 138 MTDEN-------------KLITLPSDANILHAMQLMTDKHIRHVPVID-------GRIVG 177
           +  +                 ++     +  A   M +     +P+ID         +V 
Sbjct: 105 LQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVS 164

Query: 178 MISIVDVVRA 187
           +++   +++ 
Sbjct: 165 VLTQYRILKF 174

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMISIVDVVR 186
                 +++    +LI L +   +  ++ ++    I   P+ D    R  G+++  D + 
Sbjct: 28  NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFIN 87

Query: 187 AVV 189
            + 
Sbjct: 88  VIQ 90

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 56  NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTE 115
           ++SV E LM + DD  G    C  +D +   + N+ +  +    V+   +   + G+ T 
Sbjct: 255 SLSVGEALMRRSDDFEGV-YTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTL 311

Query: 116 RDYLRKIV 123
            D L+ I+
Sbjct: 312 SDILKYIL 319

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 85.4 bits (211), Expect = 4e-20
 Identities = 22/187 (11%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 19  ILEHHQGRYVVEGRKTCSRFGCVISSSSSPTEEKGLENISVAEVL-MTKGDDKVGSW--- 74
           ++ +   R  V   ++ +    +         +  +      E +  +  + ++G++   
Sbjct: 144 LIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANI 203

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
              R+   V  A+    QH + +L V+   E+  +  I+++ D +     +  +     V
Sbjct: 204 AMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 261

Query: 135 AEIMT----DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
            + +         ++       +   +  + +  +  + V+D    + G++S+ D+++A+
Sbjct: 262 TKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 321

Query: 189 VEQQKGE 195
           V     +
Sbjct: 322 VLTGGEK 328

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 73.4 bits (180), Expect = 8e-16
 Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT----- 132
            +   V+ A   +  + + +  +    +Q    G+ T  D++  +    +S         
Sbjct: 51  DTSLQVKKAFFALVTNGVRAAPLWDSKKQS-FVGMLTITDFINILHRYYKSALVQIYELE 109

Query: 133 -------RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMISIV 182
                  R   +      L+ +  +A++  A+  +    I  +PVID   G  + +++  
Sbjct: 110 EHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK 169

Query: 183 DVVRAVVE 190
            +++ +  
Sbjct: 170 RILKFLKL 177

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 70.4 bits (172), Expect = 1e-14
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 13/161 (8%)

Query: 46  SSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE 105
           S+  +   LE   +         D     +C   + ++ DAV ++ ++ I  L V+ P E
Sbjct: 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-E 158

Query: 106 QQHIAGIFTERDYLRKIVGQGRSPKYTR--------VAEIMTDENKLITLPSDANILHAM 157
             +   I T +  L+ +                   +         +  + +   +  A+
Sbjct: 159 SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN--IAMVRTTTPVYVAL 216

Query: 158 QLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQKGEL 196
            +     +  +PV+D  GR+V + S  DV+    E+    L
Sbjct: 217 GIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL 257

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 56.1 bits (135), Expect = 9e-10
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMISIVDVVR 186
           K  R  +++   +KL+   +   +  A   +    +R  P+ D      VGM++I D + 
Sbjct: 33  KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFIN 92

Query: 187 AVVEQQKGELKRLNEF 202
            +    K  L ++ E 
Sbjct: 93  ILHRYYKSALVQIYEL 108

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 78.2 bits (193), Expect = 5e-19
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
             +  DA + +A        VL   + +   G+      L    G     +  ++ E + 
Sbjct: 21  GGSTADAARRLAASGCACAPVL---DGERYLGMVHLSRLLEGRKGWPTVKE--KLGEELL 75

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQ 191
           +   + +      +   +  +       VP+ D  GR  G++S   ++  + E+
Sbjct: 76  ET--VRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER 127

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 141 ENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQQKGELK 197
           E          +   A + +        PV+D  R +GM+ +  ++         + K
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKGWPTVKEK 69

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 23/150 (15%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 50  EEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHI 109
           E      ++V    +   D         +  + ++ A+  + +    ++ VL       +
Sbjct: 4   EHNEFMQMTVKPF-LIPADKVA----HVQPGNYLDHALLVLTKTGYSAIPVL--DTSYKL 56

Query: 110 AGIFTERDYLRKIVGQGRSPKY----TRVAEIMTDENKLITLPSDANILHAMQLMTDKHI 165
            G+ +    +  I+G  R         +V E+M     +  L  D +++ A+ L+ +   
Sbjct: 57  HGLISMTMMMDAILGLERIEFERLETMKVEEVMNRN--IPRLRLDDSLMKAVGLIVNHPF 114

Query: 166 RHVPVID--GRIVGMISIVDVVRAVVEQQK 193
             V V +  G   G+ +  +V++ + +Q  
Sbjct: 115 --VCVENDDGYFAGIFTRREVLKQLNKQLH 142

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
            V   +   +K+  +     + HA+ ++T      +PV+D   ++ G+IS+  ++ A++ 
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG 71

Query: 191 QQKGELKRLNE 201
            ++ E +RL  
Sbjct: 72  LERIEFERLET 82

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 75.9 bits (187), Expect = 7e-18
 Identities = 19/148 (12%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 50  EEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHI 109
            +   + I V ++ M   +         +  + +E A+  + +    ++ VL       +
Sbjct: 8   PKDEFQQIFVKDL-MISSEKVA----HVQIGNGLEHALLVLVKSGYSAIPVL--DPMYKL 60

Query: 110 AGIFTERDYLRKIVGQGRSP----KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHI 165
            G+ +    L  I+G  R      +  +V ++M     +  L  + +   A+++  D   
Sbjct: 61  HGLISTAMILDGILGLERIEFERLEEMKVEQVMK--QDIPVLKLEDSFAKALEMTIDHPF 118

Query: 166 RHVPVID--GRIVGMISIVDVVRAVVEQ 191
             +  ++  G   G+++   +++ + ++
Sbjct: 119 --ICAVNEDGYFEGILTRRAILKLLNKK 144

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
            V ++M    K+  +     + HA+ ++       +PV+D   ++ G+IS   ++  ++ 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILG 75

Query: 191 QQKGELKRLNE 201
            ++ E +RL E
Sbjct: 76  LERIEFERLEE 86

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 77.1 bits (190), Expect = 9e-18
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
                TV + +  M Q+     +V     + H  G+  + D L            + V  
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKD--REGHFRGVVNKEDLLDL-------DLDSSVFN 76

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
            ++  +    +  + NI HA+ L  +    ++PV+D   R+ G +S+ D + A++E
Sbjct: 77  KVSLPD--FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 130

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 127 RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDV 184
               + +V + +T       +   A +   +  M         V D  G   G+++  D+
Sbjct: 8   HHHHHMKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL 65

Query: 185 VRAVVEQQKGEL 196
           +   ++      
Sbjct: 66  LDLDLDSSVFNK 77

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 76.8 bits (189), Expect = 4e-17
 Identities = 21/116 (18%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 80  DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
             T   A++   ++ + S  V+   ++  + GI + +  L        +P   ++A ++ 
Sbjct: 17  PATRNYALELFKKYKVRSFPVVN--KEGKLVGIISVKRILV-------NPDEEQLAMLVK 67

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
               +  +  +  +  A +LM +   R V V+D  G+ VG++++ D++R    + +
Sbjct: 68  R--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE 121

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 68.3 bits (167), Expect = 4e-14
 Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137
           + +DT++ A K M +++   +VV+    +    GI T  D +R+   +    K   +   
Sbjct: 74  KENDTLKKAAKLMLEYDYRRVVVVD--SKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPY 131

Query: 138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
                 +  +     +  A++ +   +   +PV+D  G +VG++   D++R  
Sbjct: 132 YQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDS 182

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 35/148 (23%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV------------ 123
                  ++ A+K +   N  +L V+    + ++ GI  E D LR               
Sbjct: 138 IVWEGTPLKAALKALLLSNSMALPVV--DSEGNLVGIVDETDLLRDSEIVRIMKSTELAA 195

Query: 124 -----------------GQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIR 166
                                      VAEIMT +  +I       +      M    I 
Sbjct: 196 SSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRD--VIVATPHMTVHEVALKMAKYSIE 253

Query: 167 HVPVI--DGRIVGMISIVDVVRAVVEQQ 192
            +PVI  +G ++G+I   D+++ +V+ +
Sbjct: 254 QLPVIRGEGDLIGLIRDFDLLKVLVKSK 281

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
           RV  IMT     +T+   A   +A++L     +R  PV++  G++VG+IS+  ++    E
Sbjct: 2   RVKTIMTQN--PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDE 59

Query: 191 QQKGEL 196
           +Q   L
Sbjct: 60  EQLAML 65

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 74.0 bits (182), Expect = 4e-17
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 17/145 (11%)

Query: 50  EEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHI 109
           +   L   +V +  M + D         +  + +E A+  + +    ++ VL       +
Sbjct: 7   QSDQLLEATVGQF-MIEADKVA----HVQVGNNLEHALLVLTKTGYTAIPVLD--PSYRL 59

Query: 110 AGIFTERDYLRKIVGQGRSP----KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHI 165
            G+      +  I G  R          V E+M     +  L  +  I+    ++ +   
Sbjct: 60  HGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML--TDIPRLHINDPIMKGFGMVINNGF 117

Query: 166 RHVPVID--GRIVGMISIVDVVRAV 188
             V V +      G+ +   V++ +
Sbjct: 118 --VCVENDEQVFEGIFTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 59.8 bits (145), Expect = 9e-12
 Identities = 15/71 (21%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
            V + M + +K+  +    N+ HA+ ++T      +PV+D   R+ G+I    ++ ++  
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 74

Query: 191 QQKGELKRLNE 201
            ++ E ++L++
Sbjct: 75  LERIEFEKLDQ 85

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 15/148 (10%)

Query: 51  EKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIA 110
             G  ++ V    M      +        D  +E+ VK +   ++    +++  E Q + 
Sbjct: 7   NIGSHHVRVEHF-MNH---SI---TTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILV 59

Query: 111 GIFTERDYLRKIVGQGRSPKYTR-------VAEIMTDENKLITLPSDANILHAMQLMTDK 163
           GI      ++ +  +  S            +A     E   +TL S+  +  A  L    
Sbjct: 60  GIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLL 119

Query: 164 HIRHVPVID-GRIVGMISIVDVVRAVVE 190
           +++ + V   GR VG +S V++ +A+  
Sbjct: 120 NLQSLFVTSRGRAVGCVSWVEMKKAISN 147

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 74.9 bits (184), Expect = 2e-16
 Identities = 17/125 (13%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              +  V D +K +A+ NI ++ ++    +  +  ++   D +  I     S     V E
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVN--SEGTLLNVYESVDVMHLIQDGDYSNLDLSVGE 255

Query: 137 IMT----DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
            +     + + + T  +   +      +    +  + V+D   ++ G++S+ D++  ++ 
Sbjct: 256 ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY 315

Query: 191 QQKGE 195
            +   
Sbjct: 316 DKTTT 320

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 27/155 (17%)

Query: 79  SDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE-- 136
               V+ ++  +  +NI S  +      +  AG+ T  D++  I    +S  +       
Sbjct: 39  VTLFVKTSLSLLTLNNIVSAPLWDSEANK-FAGLLTMADFVNVIKYYYQSSSFPEAIAEI 97

Query: 137 --------------IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-------GRI 175
                         I     + I +    +++ A   M+    R +P+ID         I
Sbjct: 98  DKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMI 157

Query: 176 VGMISIVDVVRAV---VEQQKGELKRLNEFIRGEY 207
           V +++   +++ +    ++       LN+   G +
Sbjct: 158 VSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTW 192

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 12/166 (7%)

Query: 44  SSSSPTEEKGLENISVAEVLMTKGDDKVGSW--LCCRSDDTVEDAVKNMAQHNIGSLVVL 101
           SSS P     ++   +  +   +          +      ++ DA   M++     + ++
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 102 KPGEQQ---HIAGIFTERDYLR----KIVGQGRSPKYTRVAEIMTDENKLITLPSDANIL 154
               +     I  + T+   L+                    I T  N L T   +  + 
Sbjct: 147 DVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSN-LATASMETKVY 205

Query: 155 HAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQKGELKR 198
             ++++ +K+I  VP+++  G ++ +   VDV+  + +     L  
Sbjct: 206 DVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDL 251

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMISIVDVVR 186
           +     +++    +LI       +  ++ L+T  +I   P+ D    +  G++++ D V 
Sbjct: 20  RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVN 79

Query: 187 AVVEQQKG 194
            +    + 
Sbjct: 80  VIKYYYQS 87

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 56  NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTE 115
           ++SV E  + K          CR+ D ++     +    +  L V+   E   + GI + 
Sbjct: 250 DLSVGEA-LLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSL 306

Query: 116 RDYLRKIVGQGRSPK 130
            D L  I+    +  
Sbjct: 307 ADILNYIIYDKTTTP 321

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 27/168 (16%)

Query: 56  NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTE 115
                +V M    +     +  +   TVED    +++       V+   E Q + G    
Sbjct: 10  KTLAMDV-MKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLR 68

Query: 116 RDYLRKI-----------------------VGQGRSPKYTRVAEIMTDENKLITLPSDAN 152
           RD +  I                            +P   ++  I+       T+     
Sbjct: 69  RDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS--PFTVTDLTP 126

Query: 153 ILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQQKGELKRL 199
           +   + +     +R   V   GR++G+I+  DV++ + +    +   +
Sbjct: 127 MEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMANQDPDSI 174

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 68.3 bits (168), Expect = 8e-14
 Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              +  V DA   M ++ I  + V+   +++ + GI T RD +R I          ++++
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFIQDYSI-----KISD 179

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           +MT E  LIT P    +  A +++    I  +P++D  G + G+I+I D+ + +
Sbjct: 180 VMTKEQ-LITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSL-VVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
            + D T  D +    +    ++ V         + G+ T+RD     + Q  +     V+
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD-YPIDLTQTETK----VS 164

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           ++MT  +KL+T   D  +  A +++ +K +  +P+ID    +  ++   D  R+ 
Sbjct: 165 DMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQ 219

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 66.3 bits (163), Expect = 3e-13
 Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              +  V +A + M ++ I  + +++    + + GI T RD +R I           ++E
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD-MRFISDYNA-----PISE 156

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
            MT E+ L+T     ++  A +++ +  I  +P++D  GR+ G+I+I D+ + +
Sbjct: 157 HMTSEH-LVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 209

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 62.5 bits (153), Expect = 8e-13
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 14/128 (10%)

Query: 63  LMTKGDD--KVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
           +M  GD+   V          T+ DA+  + + N+G   +    +  +I GIFT+ D LR
Sbjct: 33  IMHTGDEIPHV------GLQATLRDALLEITRKNLGMTAICD--DDMNIIGIFTDGD-LR 83

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMI 179
           ++   G   +   +A++MT     I +      + A+ LM  +HI  V V D   ++G++
Sbjct: 84  RVFDTGVDMRDASIADVMT--RGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVV 141

Query: 180 SIVDVVRA 187
            + D++RA
Sbjct: 142 HMHDLLRA 149

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 10/114 (8%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              D TV++A+  MA++ IG L V+   E+  + G+ T RD +R      +     ++ +
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRD-VRFEKNLSK-----KIKD 159

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           +MT   KLI  P D ++  A +++    I  +P++    ++VG+I+I D++  +
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
            R + T+ D ++    H      V+   E   + GI T RD +R +    +      VA 
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVT--ENNELVGIITGRD-VRFVTDLTK-----SVAA 153

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           +MT + +L T+   A      + M    +  + V++   ++ GMI+  D  +A 
Sbjct: 154 VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 20/116 (17%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSL-VVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR 133
           +      TV D ++   +H    + +         + GI T RD +  +  +  +   T 
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD-IDFLAEKDHT---TL 174

Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           ++E+MT   +L+  P+   +  A +++       +P+++    +V +I+  D+ + 
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKN 230

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 62.1 bits (152), Expect = 9e-12
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 15/114 (13%)

Query: 77  CRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136
              D+TV+ A+  M +H I  L V+   E + + GI T++D          + +   V E
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVV---EDEKVVGIITKKDI--------AAREGKLVKE 154

Query: 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
           +MT E  +IT+P    +  A+++M +  I  +PV+D  G++VG+I++ D+V   
Sbjct: 155 LMTKE--VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK 206

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 78  RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137
           +SD TV +A+  M +H +  L V+   +   + G+  +   + +IV      +     + 
Sbjct: 399 KSDATVGEAIALMKKHRVDQLPVVD-QDDGSVLGVVGQETLITQIVS-MNRQQSDPAIKA 456

Query: 138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG------RIVGMISIVDVVRAVVEQ 191
           +    ++I L     +    +++       V ++         +  + + +DV   +   
Sbjct: 457 LNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG 512

Query: 192 QKGE 195
           ++  
Sbjct: 513 KQKP 516

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVID---GRIVGMISIVDVVRAVVE 190
                + L SDA +  A+ LM    +  +PV+D   G ++G++    ++  +V 
Sbjct: 391 LPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVS 444

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 47.6 bits (112), Expect = 6e-07
 Identities = 13/74 (17%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
             +V ++  D+  +  L  + ++  A  +M DK+++ +PV D    ++GM+S  ++    
Sbjct: 6   KLKVEDLEMDK--IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATY 63

Query: 189 VEQQKGELKRLNEF 202
           ++     +   +  
Sbjct: 64  MDIWDSNILAKSAT 77

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 127 RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDV 184
           R    +   + +  ++ L+ + +D  +      M++    + PVID   ++VG I+   +
Sbjct: 179 RLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHL 238

Query: 185 VRAVVEQ 191
           +    ++
Sbjct: 239 ISTHKKK 245

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 59/209 (28%)

Query: 15  LKGAILEHHQGRYV-VEGRKTCSRFGCVISSSSSPTEEKG---LENISVAEVLMTKG--- 67
           L+ A+LE    + V ++G       G             G   +      +V ++     
Sbjct: 140 LRQALLELRPAKNVLIDGVL-----GS------------GKTWV----ALDVCLSYKVQC 178

Query: 68  --DDKVGSWL---CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122
             D K+  WL    C S +TV + ++ +      +              I + +  LR++
Sbjct: 179 KMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 123 VGQGRSPKYTRVAEIMTDENKLITLP--SDANILHAMQ-----LMT--DKHIRHVPVIDG 173
           +   +S  Y         EN L+ L    +A   +A       L+T   K +     +  
Sbjct: 238 L---KSKPY---------ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSA 283

Query: 174 RIVGMISIVDVVRAVVEQQKGEL--KRLN 200
                IS+      +   +   L  K L+
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 145 ITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQQKG 194
           I + S + +     L        + V + G++VG++   DV        + 
Sbjct: 579 IVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDVAYGYSNSLEV 629

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 18/121 (14%)

Query: 78  RSDDTVEDAVKNMAQH-----NIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132
           R   TVE+ ++ + +       I  + V+   E+  + G+ +    LR ++    +   T
Sbjct: 169 REGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLS----LRDLI---VADPRT 219

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
           RVAEIM  +  ++ + +D +     +LM D     +PV+D  GR+VG++++ DV+  +  
Sbjct: 220 RVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 277

Query: 191 Q 191
           +
Sbjct: 278 E 278

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 19/117 (16%)

Query: 78  RSDDTVEDA---VKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
               TV  A    + +      +L ++   E     G          I    +   +  +
Sbjct: 68  SDKATVAQAQRFFRRIELDCNDNLFIV--DEADKYLGTVR----RYDIF---KHEPHEPL 118

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISI---VDVVR 186
             +++++     L ++  +L A + +       +PVID  G ++G +++     +VR
Sbjct: 119 ISLLSED--SRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVR 173

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 21/119 (17%)

Query: 78  RSDDTVEDAVKNMAQH-----NIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132
            ++ TV  A+  +         I  + V+   ++ H+ G+ +    LR ++    +   T
Sbjct: 151 VANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVIS----LRDLI---VNDDDT 201

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMIS---IVDVVR 186
            +A+I+ +   +I++    +     Q + D     VPV D    ++G+++   I+DV+ 
Sbjct: 202 LIADILNER--VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.91
4esy_A	170	CBS domain containing membrane protein; structural	99.9
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.89
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.88
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.88
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.88
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.88
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.88
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.88
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.88
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.88
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.87
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.87
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.87
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.87
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.87
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.87
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.87
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.87
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.87
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.86
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.86
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.86
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.86
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.86
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.85
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.85
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.85
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.85
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.84
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.84
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.84
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.84
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.84
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.84
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.83
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.83
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.83
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.83
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.83
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.81
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.8
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.8
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.8
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.79
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.79
3ddj_A	296	CBS domain-containing protein; structural genomics	99.78
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.78
3ddj_A	296	CBS domain-containing protein; structural genomics	99.76
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.76
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.75
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.74
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.72
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.71
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.71
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.7
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.68
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.65
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.64
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.61
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.58
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.58
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.56
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.56
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.55
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.52
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.5
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.41
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.37
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.26
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.06
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.94
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.93
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.92
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.9
4esy_A	170	CBS domain containing membrane protein; structural	98.82
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.8
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.76
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.74
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.74
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.74
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.74
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.73
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.73
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.73
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.72
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.71
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.7
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.7
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.68
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.67
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.67
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.67
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.67
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.66
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.66
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.66
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.65
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.64
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.64
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.63
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.62
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.62
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.61
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.61
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.6
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.6
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.58
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.54
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.53
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.53
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.51
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.48
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.48
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.47
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.45
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.42
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.41
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.25
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.0
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.95
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.92
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.91
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.88
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.79
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.75
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.47

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=7.2e-24  Score=158.49  Aligned_cols=144  Identities=29%  Similarity=0.470  Sum_probs=117.1

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      .+..++|+++|.+...    +++++.+++|+.+|++.|.+++++++||+  |++++++|+||.+||++++..........
T Consensus        20 ~l~~~~v~dim~~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~   93 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGR----DVVTVGPDVSIGEAAGTLHAHKIGAVVVT--DADGVVLGIFTERDLVKAVAGQGAASLQQ   93 (165)
T ss_dssp             SSSSCBHHHHHHHHCS----CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHGGGGGTS
T ss_pred             hhhhcCHHHHhccCCC----CCeEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHhcCCccccC
Confidence            3668999999997200    18899999999999999999999999999  78899999999999998776653234578


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhh
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQKGELKRLNEFIR  204 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~  204 (208)
                      +++++|.+  +++++++++++.+|++.|.+++++++||+|++ ++|+||..|+++++.+........+++++.
T Consensus        94 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~~~~~~~~~~~~l~~~i~  164 (165)
T 3fhm_A           94 SVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHIKAYIA  164 (165)
T ss_dssp             BGGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHTTCC-------------
T ss_pred             CHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998  89999999999999999999999999999999 999999999999999888887788887764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.90  E-value=1.4e-24  Score=163.20  Aligned_cols=127  Identities=23%  Similarity=0.451  Sum_probs=111.6

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC-------
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG-------  126 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~-------  126 (208)
                      +..++|+++|+++       ++++++++|+.+|++.|.+++++++||+  |++|+++|+||.+||++++....       
T Consensus        15 l~~~~V~diM~~~-------v~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~g~lvGiit~~Dll~~~~~~~~~~~~~~   85 (170)
T 4esy_A           15 IRQVPIRDILTSP-------VVTVREDDTLDAVAKTMLEHQIGCAPVV--DQNGHLVGIITESDFLRGSIPFWIYEASEI   85 (170)
T ss_dssp             HHTSBGGGGCCSC-------CCCEETTSBHHHHHHHHHHTTCSEEEEE--CTTSCEEEEEEGGGGGGGTCCTTHHHHHHH
T ss_pred             HcCCCHHHhcCCC-------CcEECCcCcHHHHHHHHHHcCCeEEEEE--cCCccEEEEEEHHHHHHHHhhccccchhhh
Confidence            5578999999998       9999999999999999999999999999  88999999999999875421110       


Q ss_pred             --------------CCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHh
Q 028491          127 --------------RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       127 --------------~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~  191 (208)
                                    ......+++++|++  +++++++++++.+|++.|.+++++++||+|++ ++|+||.+||++++..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A           86 LSRAIPAPEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             HTTTSCHHHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTTSCCC
T ss_pred             hhhccchhhHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHHHHhc
Confidence                          00124689999998  89999999999999999999999999999988 99999999999988654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.89  E-value=2e-22  Score=147.90  Aligned_cols=123  Identities=17%  Similarity=0.365  Sum_probs=111.6

Q ss_pred             cccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCC
Q 028491           54 LENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPK  130 (208)
Q Consensus        54 ~~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~  130 (208)
                      +...+|+++|++  +       ++++++++|+.+|++.|.+++++++||+  |++ ++++|+||.+||++.+....    
T Consensus        20 l~~~~v~diM~~~~~-------~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~~~----   86 (148)
T 3lv9_A           20 FEEKKIREIMVPRTD-------MVCIYESDSEEKILAILKEEGVTRYPVC--RKNKDDILGFVHIRDLYNQKINEN----   86 (148)
T ss_dssp             GGTCBGGGTSEETTT-------CCCEETTCCHHHHHHHHHHSCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHHS----
T ss_pred             cCCCCHHHccccHHH-------eEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhcCC----
Confidence            668899999999  6       8999999999999999999999999999  676 89999999999988765432    


Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhh
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~  192 (208)
                      ..+++++| +  +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.++.
T Consensus        87 ~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~i  147 (148)
T 3lv9_A           87 KIELEEIL-R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI  147 (148)
T ss_dssp             CCCGGGTC-B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHTC
T ss_pred             CccHHHhc-C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCcC
Confidence            57899999 6  7899999999999999999999999999997 5 999999999999997653

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.88  E-value=4.3e-22  Score=149.98  Aligned_cols=128  Identities=12%  Similarity=0.271  Sum_probs=109.3

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +...+|+++|++..+     ++++++++|+.+|++.|.+++++++||+  +++ ++++|+|+.+||++++...    ...
T Consensus        39 l~~~~v~diM~~~~~-----~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~~----~~~  107 (172)
T 3lhh_A           39 LDERTISSLMVPRSD-----IVFLDLNLPLDANLRTVMQSPHSRFPVC--RNNVDDMVGIISAKQLLSESIAG----ERL  107 (172)
T ss_dssp             ----CTTTTSEEGGG-----CCCEETTSCHHHHHHHHHTCCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHTT----CCC
T ss_pred             cCCCCHHHhCccHHH-----eEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCeEEEEEEHHHHHHHHhhc----Ccc
Confidence            678899999994322     8899999999999999999999999999  666 8999999999998875433    257


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~  195 (208)
                      +++++| +  +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.+...++
T Consensus       108 ~v~~im-~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~de  169 (172)
T 3lhh_A          108 ELVDLV-K--NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQE  169 (172)
T ss_dssp             CGGGGC-B--CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC--
T ss_pred             cHHHHh-c--CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCccc
Confidence            899999 6  7999999999999999999999999999997 5 999999999999998766543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.88  E-value=3.3e-22  Score=143.69  Aligned_cols=124  Identities=12%  Similarity=0.278  Sum_probs=106.4

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +...+++++|++...     ++++++++|+.+|++.|.+++++++||+  +++ ++++|+|+.+||++++....   ...
T Consensus         3 l~~~~v~~iM~~~~~-----v~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~~~~---~~~   72 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPV-----VFRVDATMTINEFLDKHKDTPFSRPLVY--SEQKDNIIGFVHRLELFKMQQSGS---GQK   72 (130)
T ss_dssp             ----CCTTTSCCBCC-----CCEEETTSBHHHHHHHTTTCSCSCCEEE--SSSTTCEEEECCHHHHHHHHHTTT---TTS
T ss_pred             cCcCCHhhCCCcHHH-----EEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCcEEEEEEHHHHHHHHhcCC---CcC
Confidence            567899999997533     6789999999999999999999999999  666 89999999999988654432   367


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~  190 (208)
                      +++++|.   ++.++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.+
T Consensus        73 ~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           73 QLGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             BHHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             CHHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence            8999995   4789999999999999999999999999986 4 9999999999998864

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.88  E-value=2.2e-22  Score=148.94  Aligned_cols=143  Identities=43%  Similarity=0.640  Sum_probs=117.4

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      .+|+++|.+... .+++++++.+++|+.+|++.|.+++++++||+  + +++++|+|+.+||++++..........++++
T Consensus         7 ~~v~dim~~~~~-~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~--~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~   82 (157)
T 4fry_A            7 TTVAQILKAKPD-SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVV--D-GDDIAGIVTERDYARKVVLQERSSKATRVEE   82 (157)
T ss_dssp             CBHHHHHHHSTT-TTCCCCEEETTSBHHHHHHHHHHHTCSEEEEE--S-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHH
T ss_pred             HHHHHHHhcccc-cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEe--e-CCEEEEEEEHHHHHHHHHhccCCccccCHHH
Confidence            579999996520 00016999999999999999999999999998  4 7899999999999887766554445789999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQKGELKRLNEFIRG  205 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~~  205 (208)
                      +|.+  ++.++++++++.+|++.|.+++++++||+|++ ++|+||..|+++++.+........+++++..
T Consensus        83 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~l~~~~~~~~~~~~~~i~~  150 (157)
T 4fry_A           83 IMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTISQLEHYIHG  150 (157)
T ss_dssp             HSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCCCCC--------
T ss_pred             HcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHHHHhhHHHHHhhccC
Confidence            9998  89999999999999999999999999999977 9999999999999998877666666766654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.88  E-value=4.6e-22  Score=146.86  Aligned_cols=129  Identities=18%  Similarity=0.306  Sum_probs=110.3

Q ss_pred             cccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCc
Q 028491           54 LENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKY  131 (208)
Q Consensus        54 ~~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~  131 (208)
                      +...+|+++|++  +       ++++++++|+.+|++.|.+++++++||+..+++++++|+||.+||++++....    .
T Consensus        17 l~~~~v~~iM~~~~~-------~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~   85 (153)
T 3oco_A           17 MNDKVASDVMVDRTS-------MSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----K   85 (153)
T ss_dssp             HHHCBHHHHSEEGGG-------CCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----T
T ss_pred             cCCCEeeeEecchhh-------eEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----C
Confidence            567899999997  5       89999999999999999999999999992134589999999999988765442    5


Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHHH
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGEL  196 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~~  196 (208)
                      .+++++| +  +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.+...++.
T Consensus        86 ~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~de~  149 (153)
T 3oco_A           86 AKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRDEQ  149 (153)
T ss_dssp             SBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC------
T ss_pred             CcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCCcc
Confidence            7899999 6  7999999999999999999999999999987 5 9999999999999998765543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.88  E-value=7.8e-22  Score=142.33  Aligned_cols=122  Identities=34%  Similarity=0.558  Sum_probs=110.2

Q ss_pred             cHHHhhc---ccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           58 SVAEVLM---TKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        58 ~v~~~m~---~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      +++++|.   ++       ++++++++|+.+|++.|.+++.+++||+  | +++++|+|+.+||++.+..++......++
T Consensus         7 ~v~~im~~~~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~~~~~~~~~~~v   76 (135)
T 2rc3_A            7 TVKHLLQEKGHT-------VVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQV   76 (135)
T ss_dssp             BHHHHHHHHCCC-------CCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSBG
T ss_pred             eHHHHHhcCCCC-------cEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEehHHHHHHHHHcCCCcccCCH
Confidence            8999999   66       8999999999999999999999999999  6 78999999999988766555433457899


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHh
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~  191 (208)
                      +++|.+  ++.++++++++.+|++.|.+++++.+||+|++ ++|+||..|+++++.+.
T Consensus        77 ~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           77 KEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             GGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC-
T ss_pred             HHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHHHHhc
Confidence            999998  89999999999999999999999999999977 99999999999998754

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.88  E-value=2.5e-22  Score=144.52  Aligned_cols=126  Identities=25%  Similarity=0.522  Sum_probs=109.8

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      +...+++++|.++       +.++++++|+.+|++.|.+++.+++||+  |++++++|+|+.+|+++..+..+......+
T Consensus         5 ~~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   75 (133)
T 1y5h_A            5 FTMTTARDIMNAG-------VTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTAT   75 (133)
T ss_dssp             ---CCHHHHSEET-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSB
T ss_pred             hhhcCHHHHhcCC-------ceEeCCCCCHHHHHHHHHHhCCCeEEEE--CCCCeEEEEEeHHHHHHHHHhcCCCccccC
Confidence            4457999999988       8999999999999999999999999999  788999999999998743444443334689


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~  190 (208)
                      ++++|.+  ++.++++++++.+|++.|.+++.+++||+|++ ++|+||..|+++++.+
T Consensus        76 v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           76 AGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             HHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTCC-
T ss_pred             HHHHhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            9999988  89999999999999999999999999999989 9999999999987653

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.88  E-value=9.7e-22  Score=141.41  Aligned_cols=124  Identities=12%  Similarity=0.274  Sum_probs=106.5

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC-CceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~-~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ++++++|++..+     ++++++++|+.+|++.|.+++++++||+  ++ +++++|+|+.+||++++.. +......+++
T Consensus         2 ~~v~~iM~~~~~-----~~~v~~~~~v~~a~~~m~~~~~~~~pVv--~~~~~~lvGivt~~dl~~~~~~-~~~~~~~~v~   73 (130)
T 3hf7_A            2 VSVNDIMVPRNE-----IVGIDINDDWKSIVRQLTHSPHGRIVLY--RDSLDDAISMLRVREAYRLMTE-KKEFTKEIML   73 (130)
T ss_dssp             CBHHHHSEEGGG-----CCEEETTSCHHHHHHHHHTCSSSEEEEE--SSSGGGEEEEEEHHHHHHHHTS-SSCCCHHHHH
T ss_pred             cCHHHhCccHHH-----EEEEcCCCCHHHHHHHHHHCCCCeEEEE--cCCCCcEEEEEEHHHHHHHHhc-cCccchhhHH
Confidence            589999986322     8899999999999999999999999999  54 5899999999998876543 3223356899


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~  191 (208)
                      ++|.   +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.++
T Consensus        74 ~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           74 RAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             HHSB---CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred             Hhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence            9994   5889999999999999999999999999986 4 99999999999998764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.88  E-value=4.6e-22  Score=147.77  Aligned_cols=127  Identities=15%  Similarity=0.221  Sum_probs=110.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC---CCcc
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS---PKYT  132 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~---~~~~  132 (208)
                      ..+++++|.|..+     ++++.+++|+.+|++.|.+++++++||+  |++++++|+||.+|+++++......   ....
T Consensus        14 ~~~~~~iM~P~~~-----v~~v~~~~t~~~a~~~m~~~~~s~~pVv--d~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~   86 (156)
T 3k6e_A           14 LGQEETFLTPAKN-----LAVLIDTHNADHATLLLSQMTYTRVPVV--TDEKQFVGTIGLRDIMAYQMEHDLSQEIMADT   86 (156)
T ss_dssp             HTTGGGGEEETTS-----SCCEETTSBHHHHHHHHTTSSSSEEEEE--CC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTS
T ss_pred             hccHHHhCcchhH-----eEEECCcCCHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEecchhhhhhhccccccccccc
Confidence            3578899998644     8999999999999999999999999999  7889999999999998877654422   2367


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~  193 (208)
                      +++++|.+  ++.++++++++.+|++.|.++++  +||+|++  ++|+||..|+++++.....
T Consensus        87 ~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~~~  145 (156)
T 3k6e_A           87 DIVHMTKT--DVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNALLH  145 (156)
T ss_dssp             BGGGTCBC--SCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHHSC
T ss_pred             CHHHhhcC--CceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHHhc
Confidence            89999998  89999999999999999998764  9999865  9999999999999976544

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.87  E-value=1.8e-22  Score=146.34  Aligned_cols=128  Identities=16%  Similarity=0.343  Sum_probs=105.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      +.+|+++|++..+     ++++++++|+.+|++.|.+++++++||+  +++ ++++|+||.+||++++....  ....++
T Consensus         2 ~~~v~~iM~~~~~-----~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~~~~--~~~~~v   72 (136)
T 3lfr_A            2 DLQVRDIMVPRSQ-----MISIKATQTPREFLPAVIDAAHSRYPVI--GESHDDVLGVLLAKDLLPLILKAD--GDSDDV   72 (136)
T ss_dssp             -CBHHHHSEEGGG-----CCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGGSSS--GGGCCG
T ss_pred             CCChHhccccHHH-----EEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHHhcc--CCCcCH
Confidence            4689999995422     7899999999999999999999999999  666 79999999999887643222  346789


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHH
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~  195 (208)
                      +++|.+   ++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.+...++
T Consensus        73 ~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de  132 (136)
T 3lfr_A           73 KKLLRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDE  132 (136)
T ss_dssp             GGTCBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-------
T ss_pred             HHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCc
Confidence            999964   889999999999999999999999999986 4 999999999999998765543

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.87  E-value=1.5e-21  Score=138.27  Aligned_cols=118  Identities=28%  Similarity=0.430  Sum_probs=107.2

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      .+++++|.++       ++++++++|+.+|++.|.+++.+.+||+  |++++++|+|+.+||++++...     ..++++
T Consensus         1 ~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~~-----~~~v~~   66 (122)
T 3kpb_A            1 TLVKDILSKP-------PITAHSNISIMEAAKILIKHNINHLPIV--DEHGKLVGIITSWDIAKALAQN-----KKTIEE   66 (122)
T ss_dssp             CBHHHHCCSC-------CCCEETTSBHHHHHHHHHHHTCSCEEEE--CTTSBEEEEECHHHHHHHHHTT-----CCBGGG
T ss_pred             CchHHhhCCC-------CEEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHHHHHHhc-----ccCHHH
Confidence            3689999998       8999999999999999999999999999  7889999999999998765432     348999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHH
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~  190 (208)
                      +|.+  ++.++++++++.+|++.|.+++.+.+||+|+ + ++|+||..|+++++.+
T Consensus        67 ~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 IMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             TSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             HhcC--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            9988  8999999999999999999999999999998 5 9999999999998864

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.87  E-value=2.3e-21  Score=144.20  Aligned_cols=126  Identities=20%  Similarity=0.288  Sum_probs=111.9

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc-------CCC
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ-------GRS  128 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~-------~~~  128 (208)
                      ..+|+++|.++       ++++.+++|+.+|++.|.+++++.+||+  |++++++|+|+.+||++.+...       ...
T Consensus         4 ~~~v~dim~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~   74 (160)
T 2o16_A            4 MIKVEDMMTRH-------PHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDSL   74 (160)
T ss_dssp             CCBGGGTSEES-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC--------
T ss_pred             cCcHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHhhcccccccch
Confidence            56899999988       8999999999999999999999999999  7789999999999998776531       112


Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhh
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~  192 (208)
                      ....+++++|.+  +++++++++++.+|+..|.+++++.+||+|++ ++|+||..|+++.+.+..
T Consensus        75 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           75 AFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred             hcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence            346789999998  89999999999999999999999999999989 999999999999987654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.87  E-value=2e-21  Score=139.68  Aligned_cols=125  Identities=36%  Similarity=0.518  Sum_probs=111.2

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      ...+++++|.++       ++++++++|+.+|++.|.+++.+++||+  | +++++|+|+.+|+++.+....  ....++
T Consensus         2 ~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~~~~--~~~~~v   69 (133)
T 2ef7_A            2 EEEIVKEYMKTQ-------VISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIGKGK--SLETKA   69 (133)
T ss_dssp             CCCBGGGTSBCS-------CCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTTC--CTTCBG
T ss_pred             CcccHHHhccCC-------CEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEcHHHHHHHHhcCC--CcccCH
Confidence            467899999998       8999999999999999999999999999  6 789999999999887654332  246789


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhH
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~  193 (208)
                      +++|.+  ++.++++++++.+|++.|.+++.+.+||+|+ + ++|+||..|+++.+.+...
T Consensus        70 ~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~  128 (133)
T 2ef7_A           70 EEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFE  128 (133)
T ss_dssp             GGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC-
T ss_pred             HHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHH
Confidence            999988  7999999999999999999999999999985 5 9999999999999987654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.87  E-value=1.8e-21  Score=138.24  Aligned_cols=121  Identities=27%  Similarity=0.373  Sum_probs=108.4

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      ++++++|.++       +.++++++|+.+|++.|.+++.+++||+  | +++++|+|+.+|+++.+.... .....++++
T Consensus         1 m~v~~~m~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~G~it~~dl~~~~~~~~-~~~~~~v~~   69 (125)
T 1pbj_A            1 MRVEDVMVTD-------VDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIAEGD-DLAEVKVWE   69 (125)
T ss_dssp             -CHHHHCBCS-------CCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHHHTC-CTTTSBHHH
T ss_pred             CCHHHhcCCC-------ceEECCCCcHHHHHHHHHHcCCCEEEEE--e-CCeeEEEEeHHHHHHHHhcCC-cccccCHHH
Confidence            4689999988       8999999999999999999999999999  6 899999999999887654432 334789999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~  190 (208)
                      +|.+  ++.++++++++.++++.|.+++.+++||+|++ ++|+||..|+++++.+
T Consensus        70 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 VMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMA  122 (125)
T ss_dssp             HCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC-
T ss_pred             HcCC--CCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            9998  89999999999999999999999999999989 9999999999998864

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.87  E-value=1.2e-21  Score=140.54  Aligned_cols=123  Identities=15%  Similarity=0.272  Sum_probs=107.2

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      ...+++++|++..+     ++++++++|+.+|++.|.+++++++||+  +++ ++++|+||.+||++++.     ....+
T Consensus         3 ~~~~v~diM~~~~~-----~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~-----~~~~~   70 (129)
T 3jtf_A            3 AERTVADIMVPRSR-----MDLLDISQPLPQLLATIIETAHSRFPVY--EDDRDNIIGILLAKDLLRYML-----EPALD   70 (129)
T ss_dssp             -CCBHHHHCEEGGG-----CCCEETTSCHHHHHHHHHHSCCSEEEEE--SSSTTCEEEEEEGGGGGGGGT-----CTTSC
T ss_pred             CCCCHHHhCccHHH-----eEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCcEEEEEEHHHHHhHhc-----cCCcC
Confidence            46799999995422     7899999999999999999999999999  664 89999999999876532     13578


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhh
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~  192 (208)
                      ++++|.+   ++++++++++.+|++.|.+++.+.+||+|+ + ++|+||..|+++.+.++.
T Consensus        71 v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei  128 (129)
T 3jtf_A           71 IRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI  128 (129)
T ss_dssp             GGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred             HHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence            9999964   789999999999999999999999999997 5 999999999999998653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.87  E-value=2.8e-21  Score=139.82  Aligned_cols=127  Identities=26%  Similarity=0.481  Sum_probs=112.9

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      +...+++++|.++       ++++++++|+.+|++.|.+++++++||+  |++++++|+|+.+||++.++..+. ....+
T Consensus         4 l~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~-~~~~~   73 (138)
T 2yzi_A            4 DMKAPIKVYMTKK-------LLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGL-PYDIP   73 (138)
T ss_dssp             CTTSBGGGTCBCC-------CCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCC-CTTSB
T ss_pred             hhhhhHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHhcCC-cccCC
Confidence            5678999999988       8999999999999999999999999999  778999999999998755444433 34688


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec-Cc-eeEEEEHHHHHHHHHHhhH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GR-IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~-~vGiit~~dll~~~~~~~~  193 (208)
                      ++++|.+  ++.++++++++.+|++.|.+++++++ |+| ++ ++|+||..|+++.+.+...
T Consensus        74 v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~  132 (138)
T 2yzi_A           74 VERIMTR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLE  132 (138)
T ss_dssp             GGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSC
T ss_pred             HHHHhhC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHH
Confidence            9999988  89999999999999999999999999 998 55 9999999999999876543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.87  E-value=7.5e-22  Score=141.21  Aligned_cols=122  Identities=15%  Similarity=0.380  Sum_probs=104.7

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      ..+++++|++..+     ++++++++|+.+|++.|.+++++++||+  +++ ++++|+||.+||++++...   ....++
T Consensus         2 ~~~v~diM~~~~~-----~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~~~---~~~~~v   71 (127)
T 3nqr_A            2 DQRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMRSD---AEAFSM   71 (127)
T ss_dssp             -CBHHHHSEEGGG-----CCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGSTT---CCCCCH
T ss_pred             CcCHHHhcccHHH-----eEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhcc---CCCCCH
Confidence            4689999996422     7899999999999999999999999999  676 8999999999988754322   246789


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHH
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~  190 (208)
                      +++|.+   +.++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.+
T Consensus        72 ~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           72 DKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             HHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             HHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            999954   679999999999999999999999999985 4 9999999999998754

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.87  E-value=1.7e-21  Score=143.07  Aligned_cols=118  Identities=26%  Similarity=0.457  Sum_probs=107.7

Q ss_pred             ccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           57 ISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        57 ~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      .+|+++|.+  +       ++++++++|+.+|++.|.+++++++||+  |++++++|+||.+||++.+. .+......++
T Consensus        28 ~~v~dim~~~~~-------~~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~-~~~~~~~~~v   97 (149)
T 3k2v_A           28 LRVNDIMHTGDE-------IPHVGLQATLRDALLEITRKNLGMTAIC--DDDMNIIGIFTDGDLRRVFD-TGVDMRDASI   97 (149)
T ss_dssp             SBGGGTSBCGGG-------SCEECTTCBHHHHHHHHHHHTSSEEEEE--CTTCBEEEEEEHHHHHHHHC-SSSCCTTCBH
T ss_pred             cCHHHHhcCCCC-------CeEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCcEEEEecHHHHHHHHh-cCCCcccCcH
Confidence            589999999  7       8999999999999999999999999999  78899999999999887543 4333457899


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                      +++|.+  ++.++++++++.+|++.|.+++++.+||+|++ ++|+||..|+++
T Consensus        98 ~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil~  148 (149)
T 3k2v_A           98 ADVMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLLR  148 (149)
T ss_dssp             HHHSEE--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHTC
T ss_pred             HHHcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhhc
Confidence            999998  79999999999999999999999999999999 999999999975

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.86  E-value=2.7e-21  Score=141.92  Aligned_cols=131  Identities=13%  Similarity=0.281  Sum_probs=111.6

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC----C
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR----S  128 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~----~  128 (208)
                      .+...+|+++|.+..+     ++++++++|+.+|++.|.+++++++||+  |++++++|+||.+||++++.....    .
T Consensus        11 ~l~~~~v~~im~~~~~-----~~~v~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~   83 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEK-----VAHVQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLISTAMILDGILGLERIEFER   83 (150)
T ss_dssp             HHHHCBHHHHSEEGGG-----SCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHTBCSSSBCGGG
T ss_pred             hhhcCChhhcccCCCc-----eEEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCCEEEEEEHHHHHHHHHhhcccchhH
Confidence            4678999999995312     7899999999999999999999999999  788999999999999876532111    1


Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHH
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKG  194 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~  194 (208)
                      ....+++++|.+  ++.++++++++.+|++.|.++++  +||+|+ + ++|+||..|+++.+.+...+
T Consensus        84 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~~  147 (150)
T 3lqn_A           84 LEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQ  147 (150)
T ss_dssp             GGGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             HhcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhHh
Confidence            246789999998  89999999999999999999987  999995 5 99999999999999876653

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.86  E-value=3.9e-21  Score=138.98  Aligned_cols=124  Identities=31%  Similarity=0.500  Sum_probs=109.7

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHH-HHHHHhcCCCCCcc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY-LRKIVGQGRSPKYT  132 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl-~~~~~~~~~~~~~~  132 (208)
                      +...+++++|.++       +.++++++|+.+|.+.|.+++.+++||+  |++++++|+|+.+|+ ++.+. .+ .....
T Consensus         5 l~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~-~~-~~~~~   73 (138)
T 2p9m_A            5 LKNIKVKDVMTKN-------VITAKRHEGVVEAFEKMLKYKISSLPVI--DDENKVIGIVTTTDIGYNLIR-DK-YTLET   73 (138)
T ss_dssp             CTTCBGGGTSBCS-------CCCEETTSBHHHHHHHHHHHTCCEEEEE--CTTCBEEEEEEHHHHHHHHTT-TC-CCSSC
T ss_pred             cccCCHHHhhcCC-------ceEECCCCcHHHHHHHHHHCCCcEEEEE--CCCCeEEEEEEHHHHHHHHHh-hc-ccCCc
Confidence            5678999999988       8999999999999999999999999999  778999999999998 76443 22 23477


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcC-----CCEeeeec-Cc-eeEEEEHHHHHHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKH-----IRHVPVID-GR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~-----~~~lpVvd-~~-~vGiit~~dll~~~~~  190 (208)
                      +++++|.+  ++.++++++++.++++.|.+++     .+.+||+| ++ ++|+||..|+++.+.+
T Consensus        74 ~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           74 TIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             BHHHHSCS--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CHHHHhCC--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            89999998  8999999999999999999999     99999999 45 9999999999998865

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.86  E-value=8.8e-22  Score=140.98  Aligned_cols=122  Identities=12%  Similarity=0.176  Sum_probs=108.1

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      .+.+++++|.++       +.++++++|+.+|++.|.+++.+++||+  |+ ++++|+|+.+||++++. ++ .....++
T Consensus         3 ~s~~v~~~m~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~-~~~~Givt~~dl~~~~~-~~-~~~~~~v   70 (128)
T 3gby_A            3 ASVTFSYLAETD-------YPVFTLGGSTADAARRLAASGCACAPVL--DG-ERYLGMVHLSRLLEGRK-GW-PTVKEKL   70 (128)
T ss_dssp             TTCBGGGGCBCC-------SCCEETTSBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHTTCS-SS-CCTTCBC
T ss_pred             cceEHHHhhcCC-------cceECCCCCHHHHHHHHHHCCCcEEEEE--EC-CEEEEEEEHHHHHHHHh-hC-CcccCcH
Confidence            367999999999       8999999999999999999999999999  66 99999999999876532 22 1223679


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHH
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~  190 (208)
                      +++|.+  ++.++++++++.+|++.|.+++.+++||+|+ + ++|+||..|+++.+.+
T Consensus        71 ~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           71 GEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CGGGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             HHHccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            999998  8999999999999999999999999999985 4 9999999999999865

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.86  E-value=4.4e-21  Score=148.66  Aligned_cols=128  Identities=15%  Similarity=0.247  Sum_probs=111.8

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhc---CCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCC
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQH---NIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK  130 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~---~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~  130 (208)
                      +...+++++|+++       ++++++++|+.+|++.|++.   +++++||+  |++++++|+|+.+||+.+       ..
T Consensus        51 ~~~~~v~~iM~~~-------~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~~-------~~  114 (205)
T 3kxr_A           51 YSENEIGRYTDHQ-------MLVLSDKATVAQAQRFFRRIELDCNDNLFIV--DEADKYLGTVRRYDIFKH-------EP  114 (205)
T ss_dssp             SCTTCGGGGCBCC-------CCEEETTCBHHHHHHHHHHCCCTTCCEEEEE--CTTCBEEEEEEHHHHTTS-------CT
T ss_pred             CCcchHHhhccCc-------eEEECCCCcHHHHHHHHHhhCccCeeEEEEE--cCCCeEEEEEEHHHHHhC-------CC
Confidence            5678999999998       99999999999999999987   78999999  789999999999998642       34


Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHH
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRL  199 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~  199 (208)
                      ..+++++|.+  +++++++++++.+|++.|.+++++.+||+|++  ++|+||..|+++.+.+...+...++
T Consensus       115 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~ed~~~~  183 (205)
T 3kxr_A          115 HEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEAQLMAT  183 (205)
T ss_dssp             TSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC------
T ss_pred             cchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHHHHHHh
Confidence            6789999988  89999999999999999999999999999964  9999999999999988776655443

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.86  E-value=8.5e-21  Score=137.93  Aligned_cols=121  Identities=22%  Similarity=0.319  Sum_probs=108.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCc--eEEEeechHHHHHHHHhcCCCCCccc
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQ--HIAGIFTERDYLRKIVGQGRSPKYTR  133 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~--~~iG~vt~~dl~~~~~~~~~~~~~~~  133 (208)
                      ..+++++|.++       ++++++++|+.+|++.|.+++++++||+  |+++  +++|+|+.+||++.+....  ....+
T Consensus         4 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~~~Givt~~dl~~~~~~~~--~~~~~   72 (141)
T 2rih_A            4 AIRTSELLKRP-------PVSLPETATIREVATELAKNRVGLAVLT--ARDNPKRPVAVVSERDILRAVAQRL--DLDGP   72 (141)
T ss_dssp             -CBGGGGCCSC-------CEEEETTCBHHHHHHHHHHHTCSEEEEE--ETTEEEEEEEEEEHHHHHHHHHTTC--CTTSB
T ss_pred             ceEHHHHhcCC-------CeEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCcceeEEEEEHHHHHHHHhcCC--CCCCC
Confidence            46899999988       9999999999999999999999999999  6777  9999999999988654332  24688


Q ss_pred             hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHH
Q 028491          134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~  190 (208)
                      ++++|.+  ++.+++++ ++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+..
T Consensus        73 v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           73 AMPIANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             SGGGCBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             HHHHcCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence            9999988  89999999 9999999999999999999985 5 9999999999988765

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.85  E-value=3.1e-21  Score=141.40  Aligned_cols=130  Identities=23%  Similarity=0.401  Sum_probs=107.7

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc---------
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ---------  125 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~---------  125 (208)
                      ...+++++|.+..+     ++++.+++|+.+|++.|.+++++++||+  |++++++|+|+.+||+..+...         
T Consensus         3 ~~~~v~~im~~~~~-----~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~   75 (152)
T 4gqw_A            3 GVYTVGEFMTKKED-----LHVVKPTTTVDEALELLVENRITGFPVI--DEDWKLVGLVSDYDLLALDSGDSTWKTFNAV   75 (152)
T ss_dssp             CCSBGGGTSEESTT-----CCCBCTTSBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHTTCC----CCHHHHHH
T ss_pred             ceEEhhhccCCCCC-----CeEECCCCcHHHHHHHHHHcCCceEEEE--eCCCeEEEEEEHHHHHHhhcccCcccchHHH
Confidence            35789999999211     8999999999999999999999999999  7889999999999987432110         


Q ss_pred             ---CCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhH
Q 028491          126 ---GRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       126 ---~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~  193 (208)
                         .......+++++|.+  +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.+...
T Consensus        76 ~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~  146 (152)
T 4gqw_A           76 QKLLSKTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR  146 (152)
T ss_dssp             HTC-----CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC---
T ss_pred             HHHHHHhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence               011235789999998  7899999999999999999999999999985 5 9999999999999987544

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.85  E-value=2.3e-20  Score=138.62  Aligned_cols=128  Identities=16%  Similarity=0.251  Sum_probs=110.6

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC--CceEEEeechHHHHHHHHhcCCC---
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE--QQHIAGIFTERDYLRKIVGQGRS---  128 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~--~~~~iG~vt~~dl~~~~~~~~~~---  128 (208)
                      +...+++++|.++       ++++++++|+.+|++.|.+++++++||+  |+  +++++|+||..||++.+......   
T Consensus        10 ~~~~~v~dim~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~pVv--d~~~~~~~~Givt~~dl~~~~~~~~~~~~~   80 (164)
T 2pfi_A           10 SHHVRVEHFMNHS-------ITTLAKDTPLEEVVKVVTSTDVTEYPLV--ESTESQILVGIVQRAQLVQALQAEPPSRAP   80 (164)
T ss_dssp             CCSCBHHHHCBCC-------CCCEETTCBHHHHHHHHHTCCCSEEEEE--SCTTTCBEEEEEEHHHHHHHHHC-------
T ss_pred             ccCCCHHHHcCCC-------CeEECCCCcHHHHHHHHHhCCCCceeEE--ecCCCCEEEEEEEHHHHHHHHHhhccccCC
Confidence            4468999999998       8999999999999999999999999999  65  78999999999988765432211   


Q ss_pred             CCccchhhhhccCCC------eEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhh
Q 028491          129 PKYTRVAEIMTDENK------LITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       129 ~~~~~v~~im~~~~~------~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~  192 (208)
                      ....++.++|..  +      +.++++++++.+|++.|.+++++++||+|++ ++|+||..|+++.+.+..
T Consensus        81 ~~~~~v~~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A           81 GHQQCLQDILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             CCCCBHHHHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             cccchhhhhhcc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHhhh
Confidence            134689999987  5      7899999999999999999999999999977 999999999999987643

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.85  E-value=6.6e-21  Score=143.62  Aligned_cols=127  Identities=20%  Similarity=0.399  Sum_probs=109.4

Q ss_pred             cccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC-------
Q 028491           56 NISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG-------  126 (208)
Q Consensus        56 ~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~-------  126 (208)
                      .++|+++|.+  +       ++++++++|+.+|++.|.+++++++||+  |++++++|+|+.+||++.....+       
T Consensus         3 ~~~v~dim~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   73 (180)
T 3sl7_A            3 GYTVGDFMTPRQN-------LHVVKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLALDSISGRSQNDTN   73 (180)
T ss_dssp             CCBHHHHSEEGGG-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHTCC------------
T ss_pred             ceeHHHhcCCCCC-------ceeeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCeEEEEEEHHHHHhhhhhccccCCccc
Confidence            4689999999  6       8999999999999999999999999999  78899999999999874221110       


Q ss_pred             -------------------CCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHH
Q 028491          127 -------------------RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVV  185 (208)
Q Consensus       127 -------------------~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll  185 (208)
                                         ......+++++|.+  +++++++++++.+|++.|.+++++++||+|+ + ++|+||..|++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil  151 (180)
T 3sl7_A           74 LFPDVDSTWKTFNELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV  151 (180)
T ss_dssp             -------CCCSHHHHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHH
T ss_pred             ccccccchhhhhHHHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHH
Confidence                               01236789999998  7899999999999999999999999999985 5 99999999999


Q ss_pred             HHHHHhhH
Q 028491          186 RAVVEQQK  193 (208)
Q Consensus       186 ~~~~~~~~  193 (208)
                      +.+.....
T Consensus       152 ~~~~~~~~  159 (180)
T 3sl7_A          152 RAALQIKR  159 (180)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99987554

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.85  E-value=2.8e-20  Score=135.11  Aligned_cols=129  Identities=16%  Similarity=0.305  Sum_probs=107.5

Q ss_pred             cccccHHH---hhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCC
Q 028491           54 LENISVAE---VLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK  130 (208)
Q Consensus        54 ~~~~~v~~---~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~  130 (208)
                      +...++++   +|.++       ++++++++|+.+|++.|.+++++++||+  |++++++|+|+.+||++.+........
T Consensus         5 ~~~~~v~~~~~~~~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~   75 (144)
T 2nyc_A            5 FLKIPIGDLNIITQDN-------MKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDL   75 (144)
T ss_dssp             GGGSBGGGSSCCBCSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC----C
T ss_pred             hhhcchhhcCCCCCCC-------ceEECCCCcHHHHHHHHHHcCcceeeEE--cCCCcEEEEEcHHHHHHHhcccccccC
Confidence            33567778   77777       8999999999999999999999999999  778999999999999876654321234


Q ss_pred             ccchhhhhccCC----CeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491          131 YTRVAEIMTDEN----KLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       131 ~~~v~~im~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~  191 (208)
                      ..+++++|.+.+    ++.++++++++.+|++.|.+++.+.+||+|+ + ++|+||..|+++.+.+.
T Consensus        76 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  142 (144)
T 2nyc_A           76 SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  142 (144)
T ss_dssp             CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             CccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHhc
Confidence            678999997521    4789999999999999999999999999985 5 99999999999998653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.84  E-value=2e-20  Score=138.86  Aligned_cols=130  Identities=20%  Similarity=0.380  Sum_probs=113.1

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      .+..++|+++|.+.        +++.+++|+.+|++.|.+++++++||+  |++++++|+||.+||++++.... .....
T Consensus        13 ~l~~~~v~~im~~~--------~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~-~~~~~   81 (159)
T 3fv6_A           13 KLKKLQVKDFQSIP--------VVIHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIGQQ-ELTSV   81 (159)
T ss_dssp             HHTTCBGGGSCBCC--------CEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHTSCS-CTTTC
T ss_pred             HHhhCCHHHHcCCC--------EEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHhhccC-cccCc
Confidence            46678999999865        489999999999999999999999999  78899999999999988664433 34578


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-----ceeEEEEHHHHHHHHHHhhH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-----RIVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~vGiit~~dll~~~~~~~~  193 (208)
                      +++++|.+.++++++++++++.+|++.|.+++++++||+|+     .++|+||..|+++++.+...
T Consensus        82 ~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~  147 (159)
T 3fv6_A           82 PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSE  147 (159)
T ss_dssp             BGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHT
T ss_pred             CHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhh
Confidence            99999986445889999999999999999999999999974     39999999999999986543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.84  E-value=1.6e-20  Score=142.71  Aligned_cols=124  Identities=19%  Similarity=0.401  Sum_probs=111.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++|.+.       ++++++++|+.+|++.|.+++++.+||+  +++++++|+|+.+||++++..........+++
T Consensus         8 ~~~v~~im~~~-------~~~v~~~~~l~ea~~~~~~~~~~~~pVv--d~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~   78 (184)
T 1pvm_A            8 FMRVEKIMNSN-------FKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEVPIR   78 (184)
T ss_dssp             CCBGGGTSBTT-------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGG
T ss_pred             ccCHHHhcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhcccCcccCCHH
Confidence            37899999988       9999999999999999999999999999  77899999999999987654323234567899


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHH
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~  190 (208)
                      ++|.+  ++.++++++++.+|++.|.+++.+.+||+|+ + ++|+||..|+++++.+
T Consensus        79 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           79 LVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             GTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             HHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            99998  8999999999999999999999999999998 5 9999999999998876

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.84  E-value=2e-20  Score=138.72  Aligned_cols=129  Identities=16%  Similarity=0.258  Sum_probs=110.7

Q ss_pred             cccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC----
Q 028491           54 LENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR----  127 (208)
Q Consensus        54 ~~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~----  127 (208)
                      +...+|+++|.+  +       ++++++++|+.+|++.|.+++++.+||+  |++++++|+|+..||+..+.....    
T Consensus        11 l~~~~v~~im~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~   81 (159)
T 1yav_A           11 LLEATVGQFMIEADK-------VAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFE   81 (159)
T ss_dssp             CTTCBHHHHSEEGGG-------SCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGG
T ss_pred             HhHhhHHHHhCCccc-------eEEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCCEEEEeEHHHHHHHhhhhcccchh
Confidence            557899999998  6       8999999999999999999999999999  788899999999998876533221    


Q ss_pred             CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHH
Q 028491          128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~  195 (208)
                      .....+++++|.+  ++.++++++++.+|++.|.++++  +||+|+ + ++|+||..|+++.+.+.....
T Consensus        82 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~~  147 (159)
T 1yav_A           82 KLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRSL  147 (159)
T ss_dssp             GTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC---
T ss_pred             hhccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHhh
Confidence            0246789999998  89999999999999999999877  999995 5 999999999999998766543

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.84  E-value=3.5e-20  Score=140.33  Aligned_cols=137  Identities=17%  Similarity=0.265  Sum_probs=113.7

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEe--cCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC----
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCC--RSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG----  126 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v--~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~----  126 (208)
                      .+...+|+++|.+..+.   +++++  .+++|+.+|++.|.+++++.+||++.|++++++|+|+..||++.+....    
T Consensus         7 ~~~~~~v~dim~~~~~~---~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~   83 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRND---PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQD   83 (185)
T ss_dssp             --CCCBHHHHSBSCTTS---CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCS
T ss_pred             hhccCcHHHHhcccccC---ceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCC
Confidence            45678999999986211   14667  9999999999999999999999993226789999999999988765421    


Q ss_pred             -------------------CCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491          127 -------------------RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR  186 (208)
Q Consensus       127 -------------------~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~  186 (208)
                                         ......+++++|.+  +++++++++++.+|++.|.+++++++||+|++ ++|+||..|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~~dll~  161 (185)
T 2j9l_A           84 GVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLK  161 (185)
T ss_dssp             CCCTTCEEECSSSCCCCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             CccccceeecccCCcccccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEHHHHHH
Confidence                               11246789999988  79999999999999999999999999999977 999999999999


Q ss_pred             HHHHhhHH
Q 028491          187 AVVEQQKG  194 (208)
Q Consensus       187 ~~~~~~~~  194 (208)
                      .+.+....
T Consensus       162 ~l~~~~~~  169 (185)
T 2j9l_A          162 HIAQMANQ  169 (185)
T ss_dssp             HHHHHCC-
T ss_pred             HHHHhhcc
Confidence            99877654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.84  E-value=1.1e-20  Score=142.53  Aligned_cols=127  Identities=19%  Similarity=0.269  Sum_probs=109.5

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +...+|+++|++..+     ++++++++|+.+|++.|.+++++++||+  +++ ++++|+|+.+||+.++....    ..
T Consensus        33 l~~~~v~diM~~~~~-----v~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~lvGivt~~Dl~~~~~~~~----~~  101 (173)
T 3ocm_A           33 LAERSIRSIMTPRTD-----VSWVNIDDDAATIRQQLTAAPHSFFPVC--RGSLDEVVGIGRAKDLVADLITEG----RV  101 (173)
T ss_dssp             HTTSCSTTTSEEGGG-----CCCEETTSCHHHHHHHHHHSSCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHHS----SC
T ss_pred             cCCCCHHHhCCcHHH-----eEEEeCCCCHHHHHHHHHhCCCCEEEEE--eCCCCCEEEEEEHHHHHHHHhcCC----cc
Confidence            668899999986322     8899999999999999999999999999  665 89999999999988765432    45


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~  195 (208)
                      +++ +| +  +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.+...++
T Consensus       102 ~v~-~~-~--~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de  162 (173)
T 3ocm_A          102 RRN-RL-R--DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDE  162 (173)
T ss_dssp             CGG-GS-B--CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCT
T ss_pred             hhH-hc-C--CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCc
Confidence            677 54 4  6889999999999999999999999999986 4 999999999999998765543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.83  E-value=6.6e-20  Score=135.70  Aligned_cols=127  Identities=20%  Similarity=0.309  Sum_probs=111.1

Q ss_pred             cCcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcE-EEEEecCCCceEEEeechHHHHHHHHhc-----
Q 028491           52 KGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGS-LVVLKPGEQQHIAGIFTERDYLRKIVGQ-----  125 (208)
Q Consensus        52 ~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~-~pVv~~d~~~~~iG~vt~~dl~~~~~~~-----  125 (208)
                      ..+...+++++|.++       ++++.+++|+.+|++.|.+++++. +||+  |++ +++|+||..||++++...     
T Consensus        11 ~~~~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~~Vv--d~~-~~vGivt~~dl~~~~~~~~~~~~   80 (157)
T 1o50_A           11 HHMKVKDVCKLISLK-------PTVVEEDTPIEEIVDRILEDPVTRTVYVA--RDN-KLVGMIPVMHLLKVSGFHFFGFI   80 (157)
T ss_dssp             TTCBHHHHTTSSCCC-------CEEECTTCBHHHHHHHHHHSTTCCEEEEE--ETT-EEEEEEEHHHHHHHHHHHHHCCC
T ss_pred             hhhccccHhhcccCC-------CceECCCCCHHHHHHHHHhCCCCccEEEE--ECC-EEEEEEEHHHHHHHHhhhHHhhh
Confidence            346788999999998       999999999999999999999999 9999  566 999999999998765421     


Q ss_pred             ---------CCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec-Cc-eeEEEEHHHHHHHHHHh
Q 028491          126 ---------GRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GR-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       126 ---------~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~-~vGiit~~dll~~~~~~  191 (208)
                               .......+++++|.+   ++++++++++.+|++.|.+++++++||+| ++ ++|+||..|+++.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~  154 (157)
T 1o50_A           81 PKEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  154 (157)
T ss_dssp             C-------CCCCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence                     112356789999986   78999999999999999999999999999 45 99999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.83  E-value=3.2e-20  Score=137.07  Aligned_cols=127  Identities=17%  Similarity=0.306  Sum_probs=109.0

Q ss_pred             cccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC----C
Q 028491           54 LENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG----R  127 (208)
Q Consensus        54 ~~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~----~  127 (208)
                      +...+++++|.+  +       ++++++++|+.+|++.|.+++++++||+  |++++++|+|+.+|+++.+....    .
T Consensus         8 l~~~~v~~im~~~~~-------~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~   78 (157)
T 2emq_A            8 FMQMTVKPFLIPADK-------VAHVQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDAILGLERIEFE   78 (157)
T ss_dssp             --CCBSTTTCEEGGG-------SCCBCTTSBHHHHHHHHHHSSSSEEEEE--CTTCCEEEEEEHHHHHHHSBCSSSBCGG
T ss_pred             HhhCcHHhhccCCcc-------ceEECCCCcHHHHHHHHHHCCceEEEEE--cCCCCEEEEeeHHHHHHHHhcccccchH
Confidence            567899999997  6       8899999999999999999999999999  77899999999999887543210    0


Q ss_pred             CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhH
Q 028491          128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~  193 (208)
                      .....+++++|.+  ++.++++++++.+|++.|.++++  +||+|+ + ++|+||..|+++.+.....
T Consensus        79 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A           79 RLETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             GGGTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred             HhcCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence            1246789999998  89999999999999999999987  999996 5 9999999999999987644

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.83  E-value=8.2e-21  Score=140.66  Aligned_cols=118  Identities=15%  Similarity=0.367  Sum_probs=103.1

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +...+|+++|++..+     ++++++++|+.+|++.|.+++++++||+  +++ ++++|+||.+||++++..+    ...
T Consensus        35 l~~~~v~diM~~~~~-----~~~v~~~~~i~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~~----~~~  103 (156)
T 3oi8_A           35 FSDLEVRDAMITRSR-----MNVLKENDSIERITAYVIDTAHSRFPVI--GEDKDEVLGILHAKDLLKYMFNP----EQF  103 (156)
T ss_dssp             HTTCBGGGTCEEGGG-----CCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGSSCG----GGC
T ss_pred             cCCCCHhheeeeHHH-----eEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHHcC----Ccc
Confidence            667899999998311     8899999999999999999999999999  666 4999999999987653211    467


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVV  185 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll  185 (208)
                      +++++|.+   ++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|++
T Consensus       104 ~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 HLKSILRP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             CHHHHCBC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             cHHHHcCC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            89999964   789999999999999999999999999986 4 99999999986

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.83  E-value=5.8e-20  Score=149.17  Aligned_cols=131  Identities=18%  Similarity=0.381  Sum_probs=112.4

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhc-----CCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQH-----NIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS  128 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~  128 (208)
                      +...+++++|++.       ++++++++|+.+|++.|+++     +++++||+  |++++++|+||.+|++.+       
T Consensus       134 ~~~~~v~~iM~~~-------~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVv--d~~~~lvGivt~~dll~~-------  197 (286)
T 2oux_A          134 YEDETAGAIMTTE-------FVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIVN-------  197 (286)
T ss_dssp             SCTTBHHHHCBSC-------CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTTS-------
T ss_pred             CChHHHHHhCCCC-------ceEECCCCcHHHHHHHHHHcccCccceeEEEEE--cCCCeEEEEEEHHHHHcC-------
Confidence            5678999999998       99999999999999999987     78899999  788999999999998753       


Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHHHHHHHHh
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGELKRLNEF  202 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~~~~~~~~  202 (208)
                      ....+++++|.+  +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+.+...+...++.-+
T Consensus       198 ~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~~ed~~~~~g~  271 (286)
T 2oux_A          198 DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEAASDYSGLAGV  271 (286)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHHHC--------
T ss_pred             CCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHhHHHHHHhcCC
Confidence            346799999988  8999999999999999999999999999986 4 9999999999999988776665555433

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.81  E-value=2.3e-19  Score=145.00  Aligned_cols=131  Identities=24%  Similarity=0.437  Sum_probs=107.2

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhc-----CCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQH-----NIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS  128 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~  128 (208)
                      +...+++++|+++       ++++++++|+.+|++.|.++     +++++||+  |++++++|+||.+|++.+       
T Consensus       132 ~~~~~v~~iM~~~-------~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~~-------  195 (278)
T 2yvy_A          132 YEEDEAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA-------  195 (278)
T ss_dssp             SCTTBGGGTCBSC-------CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEE--CTTCBEEEEEEHHHHHHS-------
T ss_pred             CCcchHHhhcCCC-------ceEECCCCcHHHHHHHHHHccCCccceeEEEEE--CCCCCEEEEEEHHHHhcC-------
Confidence            4567899999998       99999999999999999986     78999999  788999999999998753       


Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHHHHHHHHh
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGELKRLNEF  202 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~~~~~~~~  202 (208)
                      ....+++++|.+  +++++++++++.+|++.|.+++.+.+||+|+ + ++|+||..|+++.+.+...+...++.-+
T Consensus       196 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~~ed~~~~~g~  269 (278)
T 2yvy_A          196 DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDIHKLGAV  269 (278)
T ss_dssp             CTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--------------
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHhHHHHHHhcCC
Confidence            246789999987  7999999999999999999999999999986 4 9999999999999988776655554433

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.80  E-value=3.5e-19  Score=141.13  Aligned_cols=123  Identities=20%  Similarity=0.289  Sum_probs=102.4

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC-------
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS-------  128 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~-------  128 (208)
                      ..+|+++|+++       ++++++++++.+|++.|.+++++++||+  |++|+++|+||..|+++++......       
T Consensus         6 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~l~Giit~~di~~~~~~~~~~~~~~~~~   76 (245)
T 3l2b_A            6 KLKVEDLEMDK-------IAPLAPEVSLKMAWNIMRDKNLKSIPVA--DGNNHLLGMLSTSNITATYMDIWDSNILAKSA   76 (245)
T ss_dssp             CCBGGGSCCBC-------CCCBCTTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTT
T ss_pred             cCcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHHhhhhhhhhhcc
Confidence            46899999988       8999999999999999999999999999  7889999999999999876532100       


Q ss_pred             --------------------------------------------------------------------------------
Q 028491          129 --------------------------------------------------------------------------------  128 (208)
Q Consensus       129 --------------------------------------------------------------------------------  128 (208)
                                                                                                      
T Consensus        77 ~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v  156 (245)
T 3l2b_A           77 TSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEI  156 (245)
T ss_dssp             CCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHH
T ss_pred             CCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence                                                                                            


Q ss_pred             -------------------------CCccchhhhhc-cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEE
Q 028491          129 -------------------------PKYTRVAEIMT-DENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMIS  180 (208)
Q Consensus       129 -------------------------~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit  180 (208)
                                               ....+++++|+ +  ++.++++++++.+|++.|.+++++++||+|++  ++|+||
T Consensus       157 ~~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit  234 (245)
T 3l2b_A          157 IELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKD--NLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIA  234 (245)
T ss_dssp             HHHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCT--TCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEE
T ss_pred             HHHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCC--ccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEE
Confidence                                     01356889998 5  89999999999999999999999999999864  999999


Q ss_pred             HHHHHHHHH
Q 028491          181 IVDVVRAVV  189 (208)
Q Consensus       181 ~~dll~~~~  189 (208)
                      ..|+++...
T Consensus       235 ~~dll~~~~  243 (245)
T 3l2b_A          235 RFHLISTHK  243 (245)
T ss_dssp             CC-------
T ss_pred             HHHhhchhh
Confidence            999998754

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.80  E-value=2.8e-19  Score=142.34  Aligned_cols=129  Identities=13%  Similarity=0.180  Sum_probs=105.9

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc----CC--
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ----GR--  127 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~----~~--  127 (208)
                      ...+.|+|+|+++       ++++.+++++.+|.++|.+++++.+|||+.+++++++|+|+..||++++...    ..  
T Consensus        10 ~~~~~v~diMt~~-------vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~   82 (250)
T 2d4z_A           10 KYNIQVGDIMVRD-------VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQP   82 (250)
T ss_dssp             CSSCBTTSSSBSS-------CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSC
T ss_pred             cCCCChHHhcCCC-------CeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhh
Confidence            4578999999998       9999999999999999999999999999311246899999999998765422    00  


Q ss_pred             -C---------------------C--------------------------------------------------------
Q 028491          128 -S---------------------P--------------------------------------------------------  129 (208)
Q Consensus       128 -~---------------------~--------------------------------------------------------  129 (208)
                       .                     .                                                        
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (250)
T 2d4z_A           83 AAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQ  162 (250)
T ss_dssp             CCCCCBCCC-----------------------------------------------------------------------
T ss_pred             hhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccc
Confidence             0                     0                                                        


Q ss_pred             ---------------------Cccch--h-hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHH
Q 028491          130 ---------------------KYTRV--A-EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDV  184 (208)
Q Consensus       130 ---------------------~~~~v--~-~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dl  184 (208)
                                           ...+|  . .+|.+  .++++.+++++.+++.+|...|++++||++.+ ++|+||++|+
T Consensus       163 ~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl  240 (250)
T 2d4z_A          163 VASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEI  240 (250)
T ss_dssp             ----CCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHH
T ss_pred             cCcccccccChhhhhhHHHHhcCceeccccccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHH
Confidence                                 01122  2 25777  79999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHh
Q 028491          185 VRAVVEQ  191 (208)
Q Consensus       185 l~~~~~~  191 (208)
                      ++++.+.
T Consensus       241 ~kai~~~  247 (250)
T 2d4z_A          241 QAAIEGS  247 (250)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            9998743

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.80  E-value=6e-19  Score=144.78  Aligned_cols=128  Identities=16%  Similarity=0.299  Sum_probs=111.2

Q ss_pred             ccccHHHh---hcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCc
Q 028491           55 ENISVAEV---LMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKY  131 (208)
Q Consensus        55 ~~~~v~~~---m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~  131 (208)
                      ...+++++   |.++       ++++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+.........
T Consensus       185 ~~~~v~~~~~~m~~~-------~~~v~~~~~~~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~  255 (323)
T 3t4n_C          185 LKIPIGDLNIITQDN-------MKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLS  255 (323)
T ss_dssp             CCSBGGGTTCSBCTT-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETTHHHHHHHTTHHHHTT
T ss_pred             hhCcHHHcCCCCCCC-------cEEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHHHHHHhhchhhhcc
Confidence            34578888   8777       8999999999999999999999999999  7889999999999998865433212236


Q ss_pred             cchhhhhccCC----CeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491          132 TRVAEIMTDEN----KLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       132 ~~v~~im~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~  191 (208)
                      .+++++|.+.+    +++++++++++.+|++.|.+++++++||+|+ + ++|+||..|+++++.+.
T Consensus       256 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          256 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             SBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             CCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            78999998743    5899999999999999999999999999995 5 99999999999999764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.79  E-value=5.6e-19  Score=137.43  Aligned_cols=119  Identities=20%  Similarity=0.317  Sum_probs=107.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++|.++       ++++.+++|+.+|++.|.+++++++||+  |++++++|+||.+|+++.       ....+++
T Consensus        12 ~~~~~~~~~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~l~Givt~~dl~~~-------~~~~~v~   75 (213)
T 1vr9_A           12 HMKVKKWVTQD-------FPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLDL-------DLDSSVF   75 (213)
T ss_dssp             -CBGGGGCBSC-------SCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTTS-------CTTSBSG
T ss_pred             ccCHHHhhcCC-------CeEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCEEEEEEEHHHHHhh-------cCCCcHH
Confidence            45789999998       9999999999999999999999999999  778999999999997653       2357899


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhh
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~  192 (208)
                      ++|.+  +++++++++++.+|++.|.+++++++||+|+ + ++|+||..|+++.+....
T Consensus        76 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~  132 (213)
T 1vr9_A           76 NKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  132 (213)
T ss_dssp             GGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             HHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh
Confidence            99998  8999999999999999999999999999997 5 999999999999887543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.79  E-value=3e-19  Score=156.30  Aligned_cols=126  Identities=14%  Similarity=0.232  Sum_probs=113.1

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCC-chHHHHHHHHHhcCCcEEEEEecC-CCceEEEeechHHHHHHHHhcCCCCC
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSD-DTVEDAVKNMAQHNIGSLVVLKPG-EQQHIAGIFTERDYLRKIVGQGRSPK  130 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~-~tl~~a~~~m~~~~~~~~pVv~~d-~~~~~iG~vt~~dl~~~~~~~~~~~~  130 (208)
                      .+...+|+++|+++       ++++.++ +|+.+|++.|.+++++++||+  | ++++++|+||.+||++++..... ..
T Consensus       380 ~l~~~~V~diM~~~-------~vtv~~~~~tv~ea~~~m~~~~~~~lpVv--d~~~g~lvGiVt~~Dll~~l~~~~~-~~  449 (527)
T 3pc3_A          380 WWWSLAIAELELPA-------PPVILKSDATVGEAIALMKKHRVDQLPVV--DQDDGSVLGVVGQETLITQIVSMNR-QQ  449 (527)
T ss_dssp             TTTTSBGGGGCCCC-------CSCCEETTCBHHHHHHHHHHHTCSEEEEE--CTTTCCEEEEEEHHHHHHHHHHHCC-CT
T ss_pred             cccCCcHHHhCcCC-------CeEEcCCCCcHHHHHHHHHHcCCCeEEEE--ECCCCEEEEEEEHHHHHHHHHhccC-cC
Confidence            46678999999988       9999999 999999999999999999999  7 68999999999999988776543 35


Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-----c-eeEEEEHHHHHHHHHHhh
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-----R-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~-~vGiit~~dll~~~~~~~  192 (208)
                      ..+|+++|++  +++++++++++.+++++|.++++  +||+|+     + ++|+||..||++++.+..
T Consensus       450 ~~~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          450 SDPAIKALNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             TSBGGGGEET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CCcHHHHhcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            7899999998  89999999999999999987765  799987     7 999999999999998765

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.78  E-value=1.6e-18  Score=140.58  Aligned_cols=130  Identities=22%  Similarity=0.234  Sum_probs=113.6

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC-----CC
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR-----SP  129 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~-----~~  129 (208)
                      ...+++++|.++       +.++.+++++.++++.|.+++++++||+  |++|+++|+||..|+++.+.....     ..
T Consensus       154 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~  224 (296)
T 3ddj_A          154 EIFPVKVFMSTK-------VQTIYKEVRLDQAVKLMLRRGFRRLPVI--DDDNKVVGIVTVVNAIKQLAKAVDKLDPDYF  224 (296)
T ss_dssp             CCCBHHHHSBCS-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHHHHTCTHHH
T ss_pred             ccccHHHhhcCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHHHHhhcChhhh
Confidence            356899999988       8999999999999999999999999999  788999999999999887642100     01


Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHH
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~  195 (208)
                      ...++.++|.+  +++++++++++.+|++.|.+++++++||+|+ + ++|+||..|+++++.+....+
T Consensus       225 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~~~  290 (296)
T 3ddj_A          225 YGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVME  290 (296)
T ss_dssp             HTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhcch
Confidence            35789999998  8999999999999999999999999999994 5 999999999999998875543

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.78  E-value=3.1e-18  Score=137.34  Aligned_cols=122  Identities=17%  Similarity=0.407  Sum_probs=109.9

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++|.++       ++++++++++.+|++.|.+++++++||+  |++++++|++|.+|+++.+....  ....+++
T Consensus        83 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~--~~~~~v~  151 (280)
T 3kh5_A           83 NEPVREIMEEN-------VITLKENADIDEAIETFLTKNVGGAPIV--NDENQLISLITERDVIRALLDKI--DENEVID  151 (280)
T ss_dssp             TSBGGGTSBCS-------CCCEETTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHGGGS--CTTCBSG
T ss_pred             hhhHHHhcCCC-------CEEECCCCCHHHHHHHHHhCCCCEEEEE--cCCCEEEEEEEHHHHHHHHhhcC--CCCCCHH
Confidence            46899999988       8999999999999999999999999999  78899999999999887654332  2345899


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~  190 (208)
                      ++|.+  ++.++++++++.++++.|.+++++++||++++ ++|+||..|+++.+..
T Consensus       152 ~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          152 DYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             GGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTS
T ss_pred             HHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhh
Confidence            99988  89999999999999999999999999999777 9999999999999854

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.76  E-value=3.7e-18  Score=138.45  Aligned_cols=122  Identities=23%  Similarity=0.382  Sum_probs=109.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++|.++       ++++.+++++.+|++.|.+++++++||+  |++++++|++|.+|+++.+. ..  ....+++
T Consensus        92 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~lvGivt~~dl~~~~~-~~--~~~~~v~  159 (296)
T 3ddj_A           92 TTPIIDYMTPN-------PVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLLYK-DL--DEIFPVK  159 (296)
T ss_dssp             TSBGGGTSEES-------CCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGGGG-GS--CCCCBHH
T ss_pred             cccHHHhccCC-------CEEEcCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHhhh-cc--cccccHH
Confidence            56899999988       8999999999999999999999999999  78899999999999876542 22  2356999


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~  191 (208)
                      ++|.+  ++.++++++++.++++.|.+++++++||+|+ + ++|+||..|+++.+...
T Consensus       160 ~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  215 (296)
T 3ddj_A          160 VFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA  215 (296)
T ss_dssp             HHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence            99987  8999999999999999999999999999995 4 99999999999998743

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.76  E-value=7.4e-18  Score=145.55  Aligned_cols=127  Identities=24%  Similarity=0.443  Sum_probs=113.1

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhc-----CCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQH-----NIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS  128 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~  128 (208)
                      +...+++++|+++       ++++++++|+.+|++.|+++     +++++||+  |++++++|+|+.+|++.+       
T Consensus       152 ~~~~~v~~iM~~~-------~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVv--d~~~~lvGiVt~~Dll~~-------  215 (473)
T 2zy9_A          152 YEEDEAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA-------  215 (473)
T ss_dssp             SCTTBSTTTCBSC-------EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEE--CTTSBEEEEEEHHHHHHS-------
T ss_pred             CCCCCHHHhCCCC-------ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEE--CCCCcEEEEEEHHHHhcC-------
Confidence            5677899999988       99999999999999999986     57899999  778999999999998752       


Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHH
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKR  198 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~  198 (208)
                      ..+.+++++|++  +++++++++++.++++.|.+++.+.+||+|++  ++|+||..|+++.+.+...++..+
T Consensus       216 ~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e~~ed~~~  285 (473)
T 2zy9_A          216 DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDIHK  285 (473)
T ss_dssp             CTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHHhhhhhhh
Confidence            346799999987  89999999999999999999999999999964  999999999999998876554444

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.75  E-value=1.1e-17  Score=137.89  Aligned_cols=129  Identities=13%  Similarity=0.268  Sum_probs=109.8

Q ss_pred             cccHHHh---hcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           56 NISVAEV---LMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        56 ~~~v~~~---m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      ..+++++   |.++       +.++++++++.+|++.|.+++++++||+  |++|+++|+||.+||++.+..........
T Consensus       181 ~~~v~~l~~~m~~~-------~~~v~~~~~~~~~~~~m~~~~~~~~~Vv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~  251 (334)
T 2qrd_G          181 RVPLNQMTIGTWSN-------LATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDL  251 (334)
T ss_dssp             CCBGGGSSCSBCSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETHHHHHHHTTSCGGGGGS
T ss_pred             hCcHHHhCCcccCC-------ceEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHHHHhhccccccccC
Confidence            3567774   7776       8899999999999999999999999999  77899999999999987654332123467


Q ss_pred             chhhhhccC----CCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhH
Q 028491          133 RVAEIMTDE----NKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       133 ~v~~im~~~----~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~  193 (208)
                      ++.++|.+.    ++++++++++++.+|++.|.+++++++||+|+ + ++|+||..|+++.+.....
T Consensus       252 ~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~~  318 (334)
T 2qrd_G          252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKT  318 (334)
T ss_dssp             BHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCCC
T ss_pred             cHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhccc
Confidence            899999831    16899999999999999999999999999995 4 9999999999999987544

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.74  E-value=4.2e-18  Score=136.92  Aligned_cols=124  Identities=23%  Similarity=0.334  Sum_probs=105.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH------HHHH------
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL------RKIV------  123 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~------~~~~------  123 (208)
                      ..+++++|.++       +.++++++++.++.+.|.+++++++||+  |++++++|+|+..|++      +.+-      
T Consensus       125 ~~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~  195 (282)
T 2yzq_A          125 GVEIEPYYQRY-------VSIVWEGTPLKAALKALLLSNSMALPVV--DSEGNLVGIVDETDLLRDSEIVRIMKSTELAA  195 (282)
T ss_dssp             GCBSTTTSBSC-------CCCEETTSBHHHHHHHHHTCSSSEEEEE--CTTSCEEEEEEGGGGGGCGGGCC---------
T ss_pred             cCcHHHHhCCC-------CEEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHhhhhhhhhhhccchhhh
Confidence            56788999877       8899999999999999999999999999  7789999999999988      4331      


Q ss_pred             hc-----------------CCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHH
Q 028491          124 GQ-----------------GRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDV  184 (208)
Q Consensus       124 ~~-----------------~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dl  184 (208)
                      ..                 .......+++++|.+  +++++++++++.+|++.|.+++++++||+|++  ++|+||..|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Di  273 (282)
T 2yzq_A          196 SSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDL  273 (282)
T ss_dssp             -----------------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHH
T ss_pred             hhhhhhhcccchHHHHhHhhhhhccCCHHHhcCC--CCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHH
Confidence            00                 011246789999998  89999999999999999999999999999974  9999999999


Q ss_pred             HHHHHH
Q 028491          185 VRAVVE  190 (208)
Q Consensus       185 l~~~~~  190 (208)
                      ++++.+
T Consensus       274 l~~~~~  279 (282)
T 2yzq_A          274 LKVLVK  279 (282)
T ss_dssp             GGGGCC
T ss_pred             HHHHHh
Confidence            987753

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.72  E-value=1.2e-18  Score=155.26  Aligned_cols=126  Identities=10%  Similarity=0.055  Sum_probs=105.1

Q ss_pred             ccccHHHhhc--ccCCCCCCCeEEecCCchHHHHHHHHH-hcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC---
Q 028491           55 ENISVAEVLM--TKGDDKVGSWLCCRSDDTVEDAVKNMA-QHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS---  128 (208)
Q Consensus        55 ~~~~v~~~m~--~~~~~~~~~~~~v~~~~tl~~a~~~m~-~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~---  128 (208)
                      ...+|+|+|+  ++       ++++++++|+.|+.+.|. +++++.+||+  |++++++|+|+.+||++.+..+...   
T Consensus       451 ~~~~V~diM~p~~~-------v~~v~~~~t~~e~~~~~~~~~~~~~~PVv--d~~~~lvGiVt~~DL~~~l~~~~~~~~~  521 (632)
T 3org_A          451 PEMTAREIMHPIEG-------EPHLFPDSEPQHIKGILEKFPNRLVFPVI--DANGYLLGAISRKEIVDRLQHVLEDVPE  521 (632)
T ss_dssp             TTSBHHHHCBCTTT-------SCCBCSSSCHHHHHHHHHHSTTCCEECBB--CTTCBBCCEESHHHHTTTTTTC------
T ss_pred             ccCcHHHHhhcCCC-------ceEecCCCcHHHHHHHHHhcCCcceEEEE--ecCCeEEEEEEHHHHHHHHHHHhhhccc
Confidence            5789999999  55       899999999999999999 7999999999  7789999999999988754322100   


Q ss_pred             -------------------------------------------CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCC
Q 028491          129 -------------------------------------------PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHI  165 (208)
Q Consensus       129 -------------------------------------------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~  165 (208)
                                                                 .+..+++++|++  +++++++++++.+|++.|.++++
T Consensus       522 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i  599 (632)
T 3org_A          522 PIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMP  599 (632)
T ss_dssp             -------------------------------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCC
T ss_pred             ccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCC
Confidence                                                       001137889998  89999999999999999999999


Q ss_pred             CEeeeecCc-eeEEEEHHHHHHHHHHh
Q 028491          166 RHVPVIDGR-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       166 ~~lpVvd~~-~vGiit~~dll~~~~~~  191 (208)
                      +++||++++ ++|+||++|+++.+.+.
T Consensus       600 ~~lpVve~G~lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          600 SMIYVTERGKLVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             SEEEEEETTEEEEEEEGGGTEECCCC-
T ss_pred             CEEEEEECCEEEEEEehhhHHHHHhhh
Confidence            999999777 99999999998876543

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.71  E-value=3.9e-18  Score=137.09  Aligned_cols=116  Identities=17%  Similarity=0.303  Sum_probs=86.9

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      ++++++|.++       ++++++++|+.+|++.|.+++++++||+  +++|+++|+++..|++..+       ...++++
T Consensus         1 m~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~pV~--d~~~~~~Giv~~~dl~~~~-------~~~~v~~   64 (282)
T 2yzq_A            1 MRVKTIMTQN-------PVTITLPATRNYALELFKKYKVRSFPVV--NKEGKLVGIISVKRILVNP-------DEEQLAM   64 (282)
T ss_dssp             CBHHHHSEES-------CCCEESSCC------------CCEEEEE--CTTCCEEEEEESSCC-----------------C
T ss_pred             CchHHhccCC-------CeEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhhh-------ccCCHHH
Confidence            4689999988       8999999999999999999999999999  6789999999999987642       3578999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH-HHHH
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR-AVVE  190 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~-~~~~  190 (208)
                      +|.+  ++.++++++++.+|++.|.+++.+.+||+|++  ++|+||..|+++ .+.+
T Consensus        65 ~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A           65 LVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             CCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             HcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhc
Confidence            9988  78999999999999999999999999999974  999999999998 6653

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.71  E-value=4.4e-17  Score=130.59  Aligned_cols=114  Identities=24%  Similarity=0.417  Sum_probs=98.9

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCC-CceEEEeechHHHHHHHHhc--------CCC-----CCccchhhhhc
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLRKIVGQ--------GRS-----PKYTRVAEIMT  139 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~-~~~~iG~vt~~dl~~~~~~~--------~~~-----~~~~~v~~im~  139 (208)
                      ++++++++|+.+|++.|.+++++++||+  ++ +++++|++|.+||++.+...        ...     ....+++++|.
T Consensus        14 ~~~v~~~~sl~~a~~~m~~~~~~~lpV~--d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~   91 (280)
T 3kh5_A           14 IVTVYPTTTIRKALMTMNENKYRRLPVV--NAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIME   91 (280)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHCCCEEEEE--CTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSB
T ss_pred             cEEECCCCcHHHHHHHHHhCCCcEeeEE--ECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcC
Confidence            8999999999999999999999999999  65 79999999999998754111        000     11468999999


Q ss_pred             cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          140 DENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       140 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      +  ++.++++++++.+|++.|.+++++++||+|++  ++|++|..|+++.+...
T Consensus        92 ~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  143 (280)
T 3kh5_A           92 E--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK  143 (280)
T ss_dssp             C--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG
T ss_pred             C--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc
Confidence            8  89999999999999999999999999999864  99999999999987654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.70  E-value=8.3e-17  Score=132.44  Aligned_cols=115  Identities=16%  Similarity=0.280  Sum_probs=101.2

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhc------cCCCeEEE
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT------DENKLITL  147 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~------~~~~~~~v  147 (208)
                      +.++.+++++.++.+.|.+++++++||+  |++|+++|+||..|+++.+..........+++++|.      +  +++++
T Consensus       203 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v  278 (330)
T 2v8q_E          203 IAMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKC  278 (330)
T ss_dssp             CCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEE
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhccccccC--CCeEE
Confidence            8899999999999999999999999999  778999999999998876543322223678999984      4  79999


Q ss_pred             cCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhh
Q 028491          148 PSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       148 ~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~  192 (208)
                      ++++++.+|++.|.+++++++||+|+ + ++|+||..|+++++.+..
T Consensus       279 ~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~  325 (330)
T 2v8q_E          279 YLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG  325 (330)
T ss_dssp             CTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             CCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence            99999999999999999999999997 5 999999999999987653

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.68  E-value=1e-16  Score=131.46  Aligned_cols=128  Identities=12%  Similarity=0.214  Sum_probs=106.5

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCce-----EEEeechHHHHHHHHhcC--CCCCccchhhh---hccCCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQH-----IAGIFTERDYLRKIVGQG--RSPKYTRVAEI---MTDENK  143 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~-----~iG~vt~~dl~~~~~~~~--~~~~~~~v~~i---m~~~~~  143 (208)
                      ++++++++++.+|++.|.+++++++||+  |+++.     ++|+||.+|+++.+....  ......+++++   |.+  +
T Consensus       124 ~v~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~--~  199 (323)
T 3t4n_C          124 TASIHPSRPLFEACLKMLESRSGRIPLI--DQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQD--N  199 (323)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEE--EECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCT--T
T ss_pred             ceEeCCCCcHHHHHHHHHhCCeeEEEEE--ecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCC--C
Confidence            8999999999999999999999999999  55554     999999999998765432  11335689999   877  8


Q ss_pred             eEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhH-HHHHHHHHhhhc
Q 028491          144 LITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQK-GELKRLNEFIRG  205 (208)
Q Consensus       144 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~-~~~~~~~~~~~~  205 (208)
                      ++++++++++.+|++.|.+++++++||+|++  ++|+||..|+++.+..... .....+++++..
T Consensus       200 ~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~  264 (323)
T 3t4n_C          200 MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR  264 (323)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGG
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhh
Confidence            9999999999999999999999999999864  9999999999999876542 223356666654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.65  E-value=9.7e-16  Score=126.04  Aligned_cols=128  Identities=12%  Similarity=0.204  Sum_probs=105.7

Q ss_pred             CcccccHHHhh--cccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcC---
Q 028491           53 GLENISVAEVL--MTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQG---  126 (208)
Q Consensus        53 ~~~~~~v~~~m--~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~---  126 (208)
                      .+...+++++|  .++       ++++++++|+.+|++.|.+++++++||+  +++ ++++|+|+.+|++..+....   
T Consensus        31 ~l~~~~v~dim~p~~~-------v~~v~~~~~v~~a~~~~~~~~~~~~pV~--d~~~~~~vGivt~~Dll~~l~~~~~~~  101 (330)
T 2v8q_E           31 FMKSHRCYDLIPTSSK-------LVVFDTSLQVKKAFFALVTNGVRAAPLW--DSKKQSFVGMLTITDFINILHRYYKSA  101 (330)
T ss_dssp             HHHHSBGGGGSCSEEE-------EEEEETTSBHHHHHHHHHHHTCSEEEEE--ETTTTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHhhhccCCCc-------EEEEeCCCcHHHHHHHHHHcCCcEEEEE--eCCCCeEEEEEEHHHHHHHHHHHHhcc
Confidence            35678999999  555       9999999999999999999999999999  555 79999999999987654311   


Q ss_pred             ----CCCCccch-------hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHHHHHh
Q 028491          127 ----RSPKYTRV-------AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       127 ----~~~~~~~v-------~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~~~~~  191 (208)
                          ......++       +++|.+  +++++++++++.+|++.|.+++++++||+|+  + ++|+||..|+++++...
T Consensus       102 ~~~~~~l~~~~~~~~~~~~~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~  178 (330)
T 2v8q_E          102 LVQIYELEEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  178 (330)
T ss_dssp             TTTCCCGGGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             ccchhHHhhccHHHHHHHHhhcccC--CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHH
Confidence                00011223       355777  8999999999999999999999999999995  5 99999999999988653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.64  E-value=7.7e-16  Score=133.89  Aligned_cols=122  Identities=22%  Similarity=0.388  Sum_probs=103.2

Q ss_pred             HHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC--CceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE--QQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        59 v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~--~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      +.++|.... ....+++++++++|+.++.++|.+++++++||+  |+  +++++|+||.+||+.    .  .....++++
T Consensus       109 V~~V~~~~~-~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVv--d~g~~~~lvGiVt~rDl~~----~--~~~~~~V~~  179 (511)
T 3usb_A          109 VDKVKRSES-GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVV--NNLDERKLVGIITNRDMRF----I--QDYSIKISD  179 (511)
T ss_dssp             HHHHHTSSS-CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEE--SCTTTCBEEEEEEHHHHTT----C--CCSSSBHHH
T ss_pred             HHHhhcccc-ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEE--ecCCCCEEEEEEEehHhhh----h--ccCCCcHHH
Confidence            556665420 001238899999999999999999999999999  66  789999999999753    1  235789999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                      +|++ ++++++++++++.++++.|.+++++.+||+|++  ++|+||.+|+++.+..
T Consensus       180 vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          180 VMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             HCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             hccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            9985 368999999999999999999999999999976  9999999999999865

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.61  E-value=2e-16  Score=137.09  Aligned_cols=116  Identities=22%  Similarity=0.317  Sum_probs=88.7

Q ss_pred             HHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhh
Q 028491           59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIM  138 (208)
Q Consensus        59 v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im  138 (208)
                      ++++|.++       ++++++++|+.++.++|.+++++.+||+  |++++++|+||.+||+.    .  .....+++++|
T Consensus        91 ~~~~m~~d-------~v~v~~~~tv~ea~~~m~~~~~s~~PVv--d~~~~lvGiVt~rDL~~----~--~~~~~~v~diM  155 (496)
T 4fxs_A           91 FEAGVVTH-------PVTVRPEQTIADVMELTHYHGFAGFPVV--TENNELVGIITGRDVRF----V--TDLTKSVAAVM  155 (496)
T ss_dssp             CCC--CBC-------CCCBCSSSBHHHHHHHHTSSCCCEEEEE--CSSSBEEEEEEHHHHTT----C--CCTTSBGGGTS
T ss_pred             cccccccC-------ceEECCCCCHHHHHHHHHHcCCcEEEEE--ccCCEEEEEEEHHHHhh----c--ccCCCcHHHHh
Confidence            35578777       9999999999999999999999999999  77899999999999752    1  23467899999


Q ss_pred             ccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          139 TDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       139 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      ++.++++++++++++.++++.|.+++++.+||+|++  ++|+||.+|+++...
T Consensus       156 ~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          156 TPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             EEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence            932248999999999999999999999999999976  999999999998753

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.58  E-value=1.3e-14  Score=125.90  Aligned_cols=117  Identities=20%  Similarity=0.350  Sum_probs=104.5

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecC--CCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPG--EQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d--~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      +++++|.++       ++++++++|+.++++.|.+++++.+||+  |  ++++++|+|+.+||+..    .  ....+++
T Consensus        91 ~~~~im~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~lvGivt~~Dl~~~----~--~~~~~v~  155 (491)
T 1zfj_A           91 RSENGVIID-------PFFLTPEHKVSEAEELMQRYRISGVPIV--ETLANRKLVGIITNRDMRFI----S--DYNAPIS  155 (491)
T ss_dssp             HHTTTTSSS-------CCCBCSSSBHHHHHHHHHHTTCSEEEEE--SCTTTCBEEEEEEHHHHHHC----S--CSSSBTT
T ss_pred             hHHhcCcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--EeCCCCEEEEEEEHHHHhhh----c--cCCCcHH
Confidence            457889887       8999999999999999999999999999  7  78999999999998752    1  2467899


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                      ++|++. +++++++++++.++++.|.+++++.+||+|++  ++|+||..|+++.+..
T Consensus       156 ~im~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          156 EHMTSE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             TSCCCS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            999842 47899999999999999999999999999975  9999999999999874

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.58  E-value=8e-15  Score=120.65  Aligned_cols=126  Identities=13%  Similarity=0.232  Sum_probs=101.9

Q ss_pred             EEecCCchHHHHHHHHHhcCCcEEEEEecCCCc-e----EEEeechHHHHHHHHhcCC--CCCccchhh---hhccCCCe
Q 028491           75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQ-H----IAGIFTERDYLRKIVGQGR--SPKYTRVAE---IMTDENKL  144 (208)
Q Consensus        75 ~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~-~----~iG~vt~~dl~~~~~~~~~--~~~~~~v~~---im~~~~~~  144 (208)
                      +++.+++++.++++.|.+++.+++||+  |+++ +    ++|+||.+|+++.+..+..  .....++++   +|.+  ++
T Consensus       120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~--~~  195 (334)
T 2qrd_G          120 IYVHPMHSLMDACLAMSKSRARRIPLI--DVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWS--NL  195 (334)
T ss_dssp             CCBCTTSBHHHHHHHHHHSCCSEEEEE--EEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCS--SC
T ss_pred             eeeCCCCcHHHHHHHHHHCCceEEEEE--eCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCcccC--Cc
Confidence            899999999999999999999999999  4544 3    9999999999887654211  112467888   4777  89


Q ss_pred             EEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhh-HHHHHHHHHhhh
Q 028491          145 ITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQ-KGELKRLNEFIR  204 (208)
Q Consensus       145 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~-~~~~~~~~~~~~  204 (208)
                      .++++++++.+|++.|.+++++++||+|+ + ++|+||..|+++.+.... ......+++++.
T Consensus       196 ~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~  258 (334)
T 2qrd_G          196 ATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALL  258 (334)
T ss_dssp             CCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHT
T ss_pred             eEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHHHh
Confidence            99999999999999999999999999986 4 999999999999886542 122234555554

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.56  E-value=1.5e-16  Score=137.70  Aligned_cols=116  Identities=19%  Similarity=0.282  Sum_probs=2.4

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhh
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI  137 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~i  137 (208)
                      +++++|.++       ++++++++|+.++.++|.+++++.+||+  | +++++|+||.+||...      .....+++++
T Consensus        89 ~~~~~m~~~-------~v~v~~~~tv~ea~~~m~~~~~s~~pVv--d-~g~lvGIVt~rDl~~~------~~~~~~V~~v  152 (490)
T 4avf_A           89 KHETAIVRD-------PVTVTPSTKIIELLQMAREYGFSGFPVV--E-QGELVGIVTGRDLRVK------PNAGDTVAAI  152 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCcccC-------ceEeCCCCcHHHHHHHHHHhCCCEEEEE--E-CCEEEEEEEhHHhhhc------cccCCcHHHH
Confidence            456778877       8999999999999999999999999999  6 7899999999997532      1346789999


Q ss_pred             hccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       138 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      |++..+++++++++++.+|+++|.+++++.+||+|++  ++|+||.+|+++...
T Consensus       153 Mtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          153 MTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ------------------------------------------------------
T ss_pred             hccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            9832248999999999999999999999999999976  999999999999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.56  E-value=2.6e-16  Score=136.82  Aligned_cols=115  Identities=22%  Similarity=0.316  Sum_probs=0.4

Q ss_pred             hcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC---ceEEEeechHHHHHHHHhcCCCCCccchhhhhc
Q 028491           63 LMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ---QHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT  139 (208)
Q Consensus        63 m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~---~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~  139 (208)
                      |.++       ++++++++|+.++++.|.+++++.+||+  |++   ++++|+||.+||+..   .  .....+++++|+
T Consensus       103 M~~~-------~~~v~~~~tv~eal~~m~~~~~s~~pVv--d~~~~~g~lvGiVt~~Dl~~~---~--~~~~~~V~diM~  168 (503)
T 1me8_A          103 FVVS-------DSNVKPDQTFADVLAISQRTTHNTVAVT--DDGTPHGVLLGLVTQRDYPID---L--TQTETKVSDMMT  168 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccC-------CeEECCCCcHHHHHHHHHHcCceEEEEE--ECCCcCCeEEEEEEHHHHHhh---h--ccccCcHHHHhC
Confidence            8877       9999999999999999999999999999  666   899999999998753   1  234678999999


Q ss_pred             cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          140 DENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       140 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      +..+++++++++++.+|++.|.+++++.+||+|++  ++|+||.+|+++.+...
T Consensus       169 ~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          169 PFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             -----------------------------------------------------C
T ss_pred             CCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence            82229999999999999999999999999999976  99999999999988643

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.55  E-value=3.3e-16  Score=136.04  Aligned_cols=119  Identities=25%  Similarity=0.468  Sum_probs=7.3

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhh
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI  137 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~i  137 (208)
                      +++++|.++       ++++++++|+.+|++.|.+++++.+||+  |++++++|+||.+||+..   .   ....+++++
T Consensus        96 ~~~~iM~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~lvGivt~~Dl~~~---~---~~~~~v~~i  160 (494)
T 1vrd_A           96 KTENGIIYD-------PITVTPDMTVKEAIDLMAEYKIGGLPVV--DEEGRLVGLLTNRDVRFE---K---NLSKKIKDL  160 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccC-------CeEECCCCCHHHHHHHHHHcCceEEEEE--cCCCEEEEEEEHHHHHhh---c---CCCCcHHHH
Confidence            457788887       9999999999999999999999999999  778999999999998752   1   246789999


Q ss_pred             hccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       138 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      |++.++++++++++++.++++.|.+++++.+||+|++  ++|+||..|+++.+...
T Consensus       161 m~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          161 MTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             ------------------------------------------------CHHHHTCT
T ss_pred             hCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            9853358899999999999999999999999999976  99999999999998654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.52  E-value=7.4e-16  Score=132.04  Aligned_cols=107  Identities=22%  Similarity=0.369  Sum_probs=0.0

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecC-CCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPG-EQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d-~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      +++++|+.|+.||.++|.+++++.+||++.+ .+++++|+||.+|+...       ..+.+|+++|++  ++++++.+.+
T Consensus       148 Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-------d~~~~V~evMT~--~lvt~~~~~~  218 (556)
T 4af0_A          148 PLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-------DAETPIKSVMTT--EVVTGSSPIT  218 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-------ccceEhhhhccc--ceEEecCCCC
Confidence            8999999999999999999999999999311 15799999999996431       346899999998  8999999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      +.+|.++|.++++..+||+|++  ++|+||++|+++...
T Consensus       219 leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            9999999999999999999987  999999999998764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.50  E-value=3.3e-14  Score=91.05  Aligned_cols=69  Identities=36%  Similarity=0.605  Sum_probs=61.2

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEE
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITL  147 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v  147 (208)
                      ++++++++|+.+|+++|.+++++++||+  + +++++|+||.+||++++..++....+.+++++|++  +++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~--d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~--~~iTV   70 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVM--E-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTK--NPVKI   70 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEE--CTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCC--CCeEC
Confidence            7899999999999999999999999999  3 58999999999998888777766667899999998  66653

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.41  E-value=1.4e-14  Score=125.50  Aligned_cols=110  Identities=29%  Similarity=0.521  Sum_probs=1.0

Q ss_pred             HHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhc
Q 028491           60 AEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT  139 (208)
Q Consensus        60 ~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~  139 (208)
                      ++.|..+       ++++++++|+.++.+.|.+++++.+||+  ++ ++++|+|+.+||+.        ....+++++|.
T Consensus        96 ~~~m~~~-------~~~v~~~~tv~ea~~~~~~~~~~~~pVv--d~-~~lvGivt~~Dl~~--------~~~~~v~~im~  157 (486)
T 2cu0_A           96 ERLIVED-------VITIAPDETVDFALFLMEKHGIDGLPVV--ED-EKVVGIITKKDIAA--------REGKLVKELMT  157 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhccccC-------ceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHhcc--------CCCCCHHHHcc
Confidence            4567766       8999999999999999999999999999  56 99999999999764        13678999999


Q ss_pred             cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          140 DENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       140 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      +  +++++++++++.++++.|.+++++.+||+|++  ++|+||..|+++...
T Consensus       158 ~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          158 K--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             ---------------------------------------------------C
T ss_pred             C--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            7  79999999999999999999999999999965  999999999999875

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.37  E-value=4.7e-15  Score=129.35  Aligned_cols=119  Identities=18%  Similarity=0.302  Sum_probs=67.0

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      +++++|.++       ++++.+++|+.+|.++|.+++++.+||+  |+   +++++|+||.+|+... . .  .....++
T Consensus       109 ~~~~im~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~~lvGiVt~~Dl~~~-~-~--~~~~~~v  175 (514)
T 1jcn_A          109 NFEQGFITD-------PVVLSPSHTVGDVLEAKMRHGFSGIPIT--ETGTMGSKLVGIVTSRDIDFL-A-E--KDHTTLL  175 (514)
T ss_dssp             TCCTTSCSS-------CCCCCC-----------------CEESC--C--------CCEECTTTTC---------------
T ss_pred             hhhhccccC-------CEEECCCCCHHHHHHHHHhcCCCEEEEE--eCCCcCCEEEEEEEHHHHHhh-h-h--ccCCCCH
Confidence            455777776       8899999999999999999999999999  66   5899999999997652 1 1  1246789


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      +++|++..+++++++++++.++++.|.+++++.+||+|++  ++|+||+.|+++.+.
T Consensus       176 ~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          176 SEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             -----CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             HHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence            9999852258899999999999999999999999999865  999999999988764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.06  E-value=1.5e-10  Score=89.58  Aligned_cols=101  Identities=14%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++|.++       ++++++++++.+|++.|.+++++.+||+  |++|+++|+||.+|+++.+....      .+.
T Consensus        71 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~Dil~~~~~~~------~~~  135 (213)
T 1vr9_A           71 DSSVFNKVSLP-------DFFVHEEDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALIEAL------AMD  135 (213)
T ss_dssp             TSBSGGGCBCT-------TCCEETTSBHHHHHHHHHHCCCSEEEEE--CTTCBEEEEEEHHHHHHHHHHSC------C--
T ss_pred             CCcHHHHccCC-------CEEECCCCcHHHHHHHHHHhCCCEEEEE--cCCCEEEEEEEHHHHHHHHHHHh------cCC
Confidence            45799999988       8999999999999999999999999999  77799999999999998764322      123


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID  172 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd  172 (208)
                      +.+..- .+.+.....++.++.+.|.+++++.++|..
T Consensus       136 ~~~~~l-~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          136 VPGIRF-SVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             -------------------------------------
T ss_pred             CCcEEE-EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence            333320 111123445699999999999999999874

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.94  E-value=2.5e-09  Score=68.10  Aligned_cols=62  Identities=16%  Similarity=0.351  Sum_probs=50.3

Q ss_pred             eEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhH-HHHHHHHHhhhc
Q 028491          144 LITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQK-GELKRLNEFIRG  205 (208)
Q Consensus       144 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~-~~~~~~~~~~~~  205 (208)
                      ++++++++++.+|+++|.+++++++||+|++ ++|+||..|+++.+..... ....+++++|..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~   65 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTK   65 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCC
Confidence            6899999999999999999999999999998 9999999999987654322 223345566543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.93  E-value=1.5e-09  Score=77.27  Aligned_cols=74  Identities=11%  Similarity=0.187  Sum_probs=60.2

Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRAVVEQQKGELKRLNEFIRG  205 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~~  205 (208)
                      .+++++|++.++++++++++++.+|++.|.+++++++||+++  + ++|+||..|+++.+..........++++++.
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m~~   78 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAADE   78 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHSBC
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhccC
Confidence            578999975436899999999999999999999999999965  4 9999999999999875432234456666644

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.92  E-value=3.2e-09  Score=76.95  Aligned_cols=64  Identities=14%  Similarity=0.331  Sum_probs=57.3

Q ss_pred             CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHHHHHh
Q 028491          128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~~~~~  191 (208)
                      .....+++++|+++.++.++++++++.+|++.|.+++++++||+|+  + ++|+||..|+++.+...
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~   85 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE   85 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            3457899999987557899999999999999999999999999987  6 99999999999987654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.82  E-value=2.8e-09  Score=79.27  Aligned_cols=57  Identities=25%  Similarity=0.476  Sum_probs=52.8

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      +.+|+++|++  +++++++++++.+|++.|.+++++.+||+|++  ++|+||..|+++.+.
T Consensus        17 ~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~   75 (170)
T 4esy_A           17 QVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSI   75 (170)
T ss_dssp             TSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTC
T ss_pred             CCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHh
Confidence            5789999998  89999999999999999999999999999876  999999999987653

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.80  E-value=1e-08  Score=75.35  Aligned_cols=61  Identities=25%  Similarity=0.370  Sum_probs=55.3

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      ..+++++|+++.++.++++++++.+|+..|.+++++++||+|++  ++|+||..|+++++...
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~   76 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEH   76 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHH
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhc
Confidence            35789999987789999999999999999999999999999875  99999999999988764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.78  E-value=6.6e-09  Score=72.75  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=57.0

Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhh
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQKGELKRLNEFIR  204 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~  204 (208)
                      +++++|.+  ++.++++++++.+|++.|.+++.+.+||+|++ ++|+||..|+++.+..........+.+++.
T Consensus         2 ~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~   72 (125)
T 1pbj_A            2 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVME   72 (125)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCB
T ss_pred             CHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcCCcccccCHHHHcC
Confidence            68899998  89999999999999999999999999999966 999999999998876532212233444443

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.76  E-value=2e-08  Score=71.08  Aligned_cols=58  Identities=16%  Similarity=0.272  Sum_probs=53.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ..+++++|. +       +.++++++++.+|++.|.+++...+||+  |++|+++|+||..|+++++.
T Consensus        71 ~~~v~~~m~-~-------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           71 QKQLGAVMR-P-------IQVVLNNTALPKVFDQMMTHRLQLALVV--DEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             TSBHHHHSE-E-------CCEEETTSCHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             cCCHHHHhc-C-------CcCcCCCCcHHHHHHHHHHcCCeEEEEE--cCCCCEEEEEEHHHHHHHHc
Confidence            568999994 4       6899999999999999999999999999  88899999999999998765

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.74  E-value=2e-08  Score=70.80  Aligned_cols=59  Identities=25%  Similarity=0.341  Sum_probs=52.4

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ...+++++|.+        +.++++++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus        67 ~~~~v~~~m~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           67 EAFSMDKVLRT--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CCCCHHHHCBC--------CCEEETTCBHHHHHHHHHHTTCCEEEEE--CTTSCEEEEEEHHHHHHHC-
T ss_pred             CCCCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence            46789999954        5789999999999999999999999999  88999999999999988653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.74  E-value=2.7e-08  Score=72.64  Aligned_cols=75  Identities=13%  Similarity=0.318  Sum_probs=58.2

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      ...+++++|.++       +.++.+++++.+|++.|.+++++.+||+  | +|+++|+||..||++++..... .....+
T Consensus        76 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dil~~l~~~~~-~~~~~~  144 (157)
T 4fry_A           76 KATRVEEIMTAK-------VRYVEPSQSTDECMALMTEHRMRHLPVL--D-GGKLIGLISIGDLVKSVIADQQ-FTISQL  144 (157)
T ss_dssp             SSCBHHHHSBSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTTCC-CCCC--
T ss_pred             cccCHHHHcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHHHHHH-hhHHHH
Confidence            467899999988       8999999999999999999999999999  6 6999999999999988765543 234456


Q ss_pred             hhhhcc
Q 028491          135 AEIMTD  140 (208)
Q Consensus       135 ~~im~~  140 (208)
                      ++++..
T Consensus       145 ~~~i~~  150 (157)
T 4fry_A          145 EHYIHG  150 (157)
T ss_dssp             ------
T ss_pred             HhhccC
Confidence            666554

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.74  E-value=2.3e-08  Score=72.17  Aligned_cols=60  Identities=20%  Similarity=0.300  Sum_probs=55.6

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ..+++++|.++       +.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..||++.+..
T Consensus        84 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           84 GKLVGDLMTPA-------PLVVEEKTNLEDAAKILLETKYRRLPVV--DSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             CCBHHHHSEES-------CCCEESSSBHHHHHHHHHHSSCCEEEEE--CTTSBEEEEEEHHHHHHHHHC
T ss_pred             cccHHHhcCCC-------ceEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCcEEEEEEHHHHHHHHHh
Confidence            56899999998       8899999999999999999999999999  788999999999999987654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.74  E-value=1.7e-08  Score=75.15  Aligned_cols=63  Identities=13%  Similarity=0.247  Sum_probs=53.5

Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHHHHHh
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~~~~~  191 (208)
                      ....+++++|++.++++++++++++.+|++.|.+++++.+||+|+  + ++|+||..|+++.+...
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~  104 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG  104 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc
Confidence            456789999994337899999999999999999999999999987  6 99999999999988643

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.73  E-value=2.6e-08  Score=72.61  Aligned_cols=59  Identities=19%  Similarity=0.422  Sum_probs=54.1

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ..+++++| ++       +.++++++++.+|++.|.+++...+||+  |++|+++|+||..|+++.+..
T Consensus        85 ~~~v~~~m-~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           85 KAKISTIM-RD-------IVSVPENMKVPDVMEEMSAHRVPMAIVI--DEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             TSBGGGTC-BC-------CEEEETTSBHHHHHHHHHHTTCSCEEEE--CTTSCEEEEECHHHHHHHHHC
T ss_pred             CCcHHHHh-CC-------CeEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCCEEEEeeHHHHHHHHhc
Confidence            56789999 66       8999999999999999999999999999  788999999999999988764

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.73  E-value=1e-09  Score=80.57  Aligned_cols=73  Identities=18%  Similarity=0.317  Sum_probs=59.5

Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRAVVEQQKGELKRLNEFIRG  205 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~~  205 (208)
                      ...+++++|+++++++++++++++.+|++.|.+++++++||+|+  + ++|+||..|+++.+...   ....++++++.
T Consensus        36 ~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---~~~~v~~im~~  111 (156)
T 3oi8_A           36 SDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP---EQFHLKSILRP  111 (156)
T ss_dssp             TTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG---GGCCHHHHCBC
T ss_pred             CCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC---CcccHHHHcCC
Confidence            46789999986446899999999999999999999999999986  4 99999999999876542   22345555543

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.73  E-value=1.6e-08  Score=70.47  Aligned_cols=57  Identities=21%  Similarity=0.411  Sum_probs=52.7

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI  122 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~  122 (208)
                      .+++++|.++       +.++++++++.++++.|.+++.+.+||+  |++|+++|+||..||++.+
T Consensus        62 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           62 KTIEEIMTRN-------VITAHEDEPVDHVAIKMSKYNISGVPVV--DDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             CBGGGTSBSS-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHH
T ss_pred             cCHHHHhcCC-------CeEECCCCCHHHHHHHHHHhCCCeEEEE--CCCCCEEEEEeHHHHHHHh
Confidence            3789999887       8999999999999999999999999999  7889999999999998864

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.72  E-value=2.5e-08  Score=74.24  Aligned_cols=61  Identities=20%  Similarity=0.319  Sum_probs=56.2

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ...+++++|.+.       +.++.+++++.+|++.|.++++.++||+  |++|+++|+||..||++.+..
T Consensus        96 ~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           96 YGKVVGDLMTPS-------PLVVRDSTNLEDAARLLLETKFRRLPVV--DADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             TTCBHHHHSEES-------CCCEETTSBHHHHHHHHTTSTTCEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             ccccHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence            356899999998       8999999999999999999999999999  788999999999999988754

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.71  E-value=1.5e-08  Score=75.83  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             EEEeechHH--HHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHH
Q 028491          109 IAGIFTERD--YLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVD  183 (208)
Q Consensus       109 ~iG~vt~~d--l~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~d  183 (208)
                      --|.++..+  ++..++.    ....+++++|++.++++++++++++.+|++.|.+++++++||+++  + ++|+||..|
T Consensus        15 ~~g~l~~~e~~~i~~~l~----l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~D   90 (173)
T 3ocm_A           15 AVPAFGVEERNMVSGVLT----LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKD   90 (173)
T ss_dssp             ---CCCHHHHHHHHHHHH----HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHH
T ss_pred             hcCCcCHHHHHHHHHHhc----cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHH
Confidence            348888555  3333332    346789999985446899999999999999999999999999975  5 999999999


Q ss_pred             HHHHHHHh
Q 028491          184 VVRAVVEQ  191 (208)
Q Consensus       184 ll~~~~~~  191 (208)
                      +++.+...
T Consensus        91 l~~~~~~~   98 (173)
T 3ocm_A           91 LVADLITE   98 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99987643

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.70  E-value=3.9e-08  Score=69.53  Aligned_cols=59  Identities=17%  Similarity=0.278  Sum_probs=52.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ..+++++|.+        +.++.+++++.+|++.|.+++...+||+  |++|+++|+||..|+++++..
T Consensus        68 ~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~pVv--d~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           68 ALDIRSLVRP--------AVFIPEVKRLNVLLREFRASRNHLAIVI--DEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             TSCGGGGCBC--------CCEEETTCBHHHHHHHHHTSSCCEEEEE--CC-CCEEEEEEHHHHHHHHHH
T ss_pred             CcCHHHHhCC--------CeEeCCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHhC
Confidence            5678899854        5789999999999999999999999999  788999999999999988754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.70  E-value=4.4e-08  Score=70.12  Aligned_cols=66  Identities=24%  Similarity=0.470  Sum_probs=53.6

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ..+++++|.+.... ..++.++++++++.++++.|.+++...+||+  |++|+++|+||..||++.+..
T Consensus        76 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           76 SLSVGEALMRRSDD-FEGVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             CSBHHHHHHHCC-------CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             CccHHHHHhcCccc-cCCCeEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEHHHHHHHHHh
Confidence            56899999862100 0017899999999999999999999999999  778999999999999987654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.68  E-value=1.4e-08  Score=73.66  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=58.7

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhh
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIR  204 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~  204 (208)
                      ..+++++|.+..+++++++++++.+|++.|.+++++.+||+|++  ++|+||..|+++.+..........+++++.
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~  102 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMT  102 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSE
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcC
Confidence            45899999864358899999999999999999999999999954  999999999999876432212234455543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.67  E-value=4.6e-08  Score=69.63  Aligned_cols=60  Identities=22%  Similarity=0.441  Sum_probs=53.7

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcC-----CcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHN-----IGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~-----~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ...+++++|.++       +.++++++++.++++.|.+++     .+.+||+  |++|+++|+||..|+++.+.
T Consensus        71 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           71 LETTIGDVMTKD-------VITIHEDASILEAIKKMDISGKKEEIINQLPVV--DKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             SSCBHHHHSCSS-------CCCEETTSBHHHHHHHHTCC-----CCCEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcCHHHHhCCC-------cEEECCCCCHHHHHHHHHhcCCccccccEEEEE--CCCCeEEEEEEHHHHHHHHH
Confidence            466899999988       899999999999999999999     9999999  77899999999999988653

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.67  E-value=1.9e-08  Score=71.03  Aligned_cols=58  Identities=14%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      .+++++|.++       +.++.+++++.++++.|.+++...+||+  |++|+++|+||..|+++++.
T Consensus        68 ~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           68 EKLGEELLET-------VRSYRPGEQLFDNLISVAAAKCSVVPLA--DEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCCGGGCBC-------CCCBCTTSBGGGSHHHHHHCSSSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             CcHHHHccCC-------CcEECCCCCHHHHHHHHHhCCCcEEEEE--CCCCCEEEEEEHHHHHHHHH
Confidence            5789999988       8899999999999999999999999999  78999999999999988653

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.67  E-value=4e-08  Score=69.59  Aligned_cols=60  Identities=27%  Similarity=0.402  Sum_probs=54.7

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ..+++++|.++       +.++++++++.++++.|.+++.+.+||+  |++|+++|+||..|+++.+..
T Consensus        66 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           66 ETKAEEFMTAS-------LITIREDSPITGALALMRQFNIRHLPVV--DDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             TCBGGGTSEEC-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHH
T ss_pred             ccCHHHHcCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence            46889999887       8899999999999999999999999999  778999999999999887644

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.67  E-value=3.5e-08  Score=70.10  Aligned_cols=60  Identities=17%  Similarity=0.348  Sum_probs=54.6

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ....+++++|.++       +.++++++++.+|++.|.+++.+.+||+  | +|+++|+||..|+++.+.
T Consensus        71 ~~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           71 VKDTQVKEIMTRQ-------VAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGGSBGGGTSBCS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             cccCCHHHhccCC-------CeEECCCCcHHHHHHHHHHhCCCEEEEE--e-CCEEEEEEEHHHHHHHHH
Confidence            3467899999988       8999999999999999999999999999  6 689999999999988764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.66  E-value=3.9e-08  Score=75.54  Aligned_cols=61  Identities=15%  Similarity=0.133  Sum_probs=55.7

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ  125 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~  125 (208)
                      ..+++++|.++       ++++++++++.+|++.|.++++..+||+  |++|+++|+||..|++..+..+
T Consensus       115 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVV--D~~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          115 HEPLISLLSED-------SRALTANTTLLDAAEAIEHSREIELPVI--DDAGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             TSBGGGGCCSS-------CCCEETTSCHHHHHHHHHTSSCSEEEEE--CTTSBEEEEEEHHHHHHHHHHH
T ss_pred             cchHHHHhcCC-------CeEECCCCCHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHHH
Confidence            56789999888       8999999999999999999999999999  8899999999999999876543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.66  E-value=2.1e-08  Score=71.45  Aligned_cols=57  Identities=25%  Similarity=0.417  Sum_probs=51.8

Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec-Cc-eeEEEEHHHHHHHH
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GR-IVGMISIVDVVRAV  188 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~-~vGiit~~dll~~~  188 (208)
                      ...+++++|.+  ++.++++++++.+|++.|.+++++.+||+| ++ ++|+||..|+++.+
T Consensus         5 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   63 (138)
T 2yzi_A            5 MKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRV   63 (138)
T ss_dssp             TTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             hhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Confidence            46789999997  899999999999999999999999999999 45 99999999998543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.65  E-value=2.6e-08  Score=73.47  Aligned_cols=61  Identities=18%  Similarity=0.285  Sum_probs=54.6

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ....+++++|.++       +.++++++++.+|++.|.++++..+||+  |+ |+++|+||..||++++..
T Consensus        90 ~~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           90 SLQQSVSVAMTKN-------VVRCQHNSTTDQLMEIMTGGRFRHVPVE--EN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             GGTSBGGGTSBSS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHHTTC
T ss_pred             cccCCHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHHHHH
Confidence            3457899999988       8999999999999999999999999999  66 999999999999987543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.64  E-value=6.5e-08  Score=75.95  Aligned_cols=60  Identities=25%  Similarity=0.531  Sum_probs=55.3

Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~  191 (208)
                      ...+++++|.+  ++.++++++++.+|++.|.+++++.+||+|+ + ++|+||..|+++.+...
T Consensus         5 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~   66 (245)
T 3l2b_A            5 VKLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI   66 (245)
T ss_dssp             CCCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCC
T ss_pred             ccCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            46789999998  8999999999999999999999999999997 4 99999999999998653

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.64  E-value=9e-08  Score=70.25  Aligned_cols=59  Identities=22%  Similarity=0.390  Sum_probs=53.9

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ...+++++|.++       +.++++++++.+|++.|.+++...+||+  |+ |+++|+||..||++.+.
T Consensus        76 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           76 FETPLFEVMHTD-------VTSVAPQAGLKESAIYMQKHKIGCLPVV--AK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             CCCBHHHHSCSC-------EEEBCTTSBHHHHHHHHHHTTCSCEEEE--ET-TEEEEEECHHHHHHHHH
T ss_pred             cccCHHHHhcCC-------CeEECCCCCHHHHHHHHHHhCCCEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence            467899999988       9999999999999999999999999999  56 99999999999988653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.63  E-value=7.3e-08  Score=76.33  Aligned_cols=61  Identities=15%  Similarity=0.340  Sum_probs=55.6

Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHHHHHHh
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~~~~~~  191 (208)
                      ....+|+++|++  +++++.+++++.+|.++|.+++++.+||+|+   + ++|+||+.||++++...
T Consensus        10 ~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           10 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence            346789999998  8999999999999999999999999999985   4 99999999999987654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.62  E-value=3.6e-08  Score=70.42  Aligned_cols=59  Identities=19%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ...+++++|.+        +.++.+++++.+|++.|.+++...+||+  |++|+++|+||..|+++++.
T Consensus        68 ~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           68 DSDDVKKLLRP--------ATFVPESKRLNVLLREFRANHNHMAIVI--DEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGCCGGGTCBC--------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHTTC-
T ss_pred             CCcCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence            45688999964        5889999999999999999999999999  88899999999999987654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.62  E-value=8.1e-08  Score=69.45  Aligned_cols=61  Identities=21%  Similarity=0.367  Sum_probs=54.3

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ  125 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~  125 (208)
                      ....+++++|.++       +.++++++++.+|++.|.++++  +||+  |++|+++|+||..||++.+...
T Consensus        84 ~~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~~~~~~~--l~Vv--d~~g~~~Giit~~dil~~l~~~  144 (150)
T 3lqn_A           84 LEEMKVEQVMKQD-------IPVLKLEDSFAKALEMTIDHPF--ICAV--NEDGYFEGILTRRAILKLLNKK  144 (150)
T ss_dssp             GGGCBGGGTCBSS-------CCEEETTCBHHHHHHHHHHCSE--EEEE--CTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhcCCHHHHhcCC-------CceeCCCCCHHHHHHHHHhCCE--EEEE--CCCCcEEEEEEHHHHHHHHHHH
Confidence            3467899999988       8999999999999999999886  9999  7889999999999999876543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.61  E-value=9.1e-08  Score=69.88  Aligned_cols=63  Identities=17%  Similarity=0.284  Sum_probs=56.8

Q ss_pred             cCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCE-eeeecCc-eeEEEEHHHHHHHHH
Q 028491          125 QGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRH-VPVIDGR-IVGMISIVDVVRAVV  189 (208)
Q Consensus       125 ~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~-lpVvd~~-~vGiit~~dll~~~~  189 (208)
                      ++......+++++|.+  ++.++++++++.+|++.|.+++++. +||+|++ ++|+||..|+++.+.
T Consensus         9 ~~~~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~   73 (157)
T 1o50_A            9 HHHHMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             -CTTCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             hhhhhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHh
Confidence            3445567889999998  8999999999999999999999999 9999998 999999999999875

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.61  E-value=5.3e-08  Score=71.36  Aligned_cols=62  Identities=23%  Similarity=0.441  Sum_probs=55.3

Q ss_pred             cccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCc---eEEEeechHHHHHHHHh
Q 028491           54 LENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQ---HIAGIFTERDYLRKIVG  124 (208)
Q Consensus        54 ~~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~---~~iG~vt~~dl~~~~~~  124 (208)
                      ....+++++|.+  +       +.++.+++++.+|++.|.++++.++||+  |++|   +++|+||..||++.+..
T Consensus        78 ~~~~~v~~~m~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           78 LTSVPVHIIMTRMPN-------ITVCRREDYVMDIAKHLIEKQIDALPVI--KDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TTTCBGGGTSEETTS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--EECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ccCcCHHHHHcCCCC-------cEEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCcceeEEEEEEHHHHHHHHHH
Confidence            346789999998  6       8899999999999999999999999999  6677   99999999999987643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.60  E-value=3.7e-08  Score=69.75  Aligned_cols=57  Identities=19%  Similarity=0.400  Sum_probs=52.3

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ...+++++|.++       +.++++++++.++++.|.+++.+++||+  |+ |+++|+||..||++.
T Consensus        72 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           72 NTATAGELARDS-------IYYVDANASIQEMLNVMEEHQVRRVPVI--SE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             TTSBHHHHHTTC-------CCCEETTCCHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHT
T ss_pred             cccCHHHHhcCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHH
Confidence            357899999988       8999999999999999999999999999  55 899999999998875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.58  E-value=6.5e-08  Score=69.29  Aligned_cols=56  Identities=21%  Similarity=0.321  Sum_probs=51.7

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ..+++++|.++       +.+++++ ++.+|++.|.+++...+||+  |++|+++|+||..||+++
T Consensus        70 ~~~v~~~m~~~-------~~~v~~~-~l~~a~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dll~~  125 (141)
T 2rih_A           70 DGPAMPIANSP-------ITVLDTD-PVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFE  125 (141)
T ss_dssp             TSBSGGGCBCC-------CEEETTS-BHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHSC
T ss_pred             CCCHHHHcCCC-------CeEEcCC-CHHHHHHHHHHcCCeEEEEE--cCCCcEEEEEEHHHHHHH
Confidence            56889999888       9999999 99999999999999999999  788999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.54  E-value=1.7e-07  Score=68.15  Aligned_cols=61  Identities=33%  Similarity=0.456  Sum_probs=54.2

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ  125 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~  125 (208)
                      +...+++++|.++       +.++++++++.+|++.|.++++  +||+  |++|+++|+||..||++.+...
T Consensus        80 ~~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~--l~Vv--d~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           80 LETMKVEEVMNRN-------IPRLRLDDSLMKAVGLIVNHPF--VCVE--NDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             GGTCBGGGTCBCC-------CCEEETTSBHHHHHHHHHHSSE--EEEE--CSSSSEEEEEEHHHHHHHHHHT
T ss_pred             hcCCcHHHHhCCC-------CceecCCCcHHHHHHHHhhCCE--EEEE--cCCCeEEEEEEHHHHHHHHHHH
Confidence            3467899999988       8999999999999999999887  9999  7789999999999999876544

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.53  E-value=2.1e-07  Score=68.02  Aligned_cols=59  Identities=20%  Similarity=0.470  Sum_probs=54.1

Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHHHHHH
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~~~~~  190 (208)
                      ...+++++|.+  ++.++++++++.+|++.|.+++++.+||+|+   + ++|+||..|+++.+..
T Consensus        11 ~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~   73 (164)
T 2pfi_A           11 HHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA   73 (164)
T ss_dssp             CSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred             cCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence            46789999998  8999999999999999999999999999985   5 9999999999988754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.53  E-value=6.6e-07  Score=77.77  Aligned_cols=101  Identities=12%  Similarity=0.161  Sum_probs=76.5

Q ss_pred             cccHHHhhcc-cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           56 NISVAEVLMT-KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        56 ~~~v~~~m~~-~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      ..+++++|++ +       ++++++++++.++.+.|.++++..+||+  |++++++|+||.+|+++.+.. .     ..+
T Consensus       174 ~~~V~~vM~~~~-------~vtv~~~~~l~eal~~m~~~~i~~lpVV--De~g~l~GiIT~~Dil~~~~~-p-----~a~  238 (511)
T 3usb_A          174 SIKISDVMTKEQ-------LITAPVGTTLSEAEKILQKYKIEKLPLV--DNNGVLQGLITIKDIEKVIEF-P-----NSA  238 (511)
T ss_dssp             SSBHHHHCCCCC-------CCCEETTCCHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHC-T-----TCC
T ss_pred             CCcHHHhcccCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--eCCCCEeeeccHHHHHHhhhc-c-----cch
Confidence            5789999997 6       8999999999999999999999999999  899999999999999987542 1     123


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeee
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI  171 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVv  171 (208)
                      .+.+.+-.....+.......+.+..+.+.+++.+.|-
T Consensus       239 ~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id  275 (511)
T 3usb_A          239 KDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLD  275 (511)
T ss_dssp             BCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEE
T ss_pred             hhhccceeeeeeeeeccchHHHHHHHHhhccceEEec
Confidence            3433331123344445455666777778888877664

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.51  E-value=1.5e-07  Score=70.28  Aligned_cols=62  Identities=16%  Similarity=0.206  Sum_probs=55.7

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ  125 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~  125 (208)
                      ....+++++|.++       +.++++++++.+|++.|.+++..++||+  + +|+++|+||..||++++...
T Consensus       105 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          105 PPTLKLRNILDLS-------PFTVTDLTPMEIVVDIFRKLGLRQCLVT--H-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CCCEECGGGEESS-------CCEEETTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHHH
T ss_pred             ccCccHHHhhCcC-------CeEeCCCCCHHHHHHHHHhCCCcEEEEE--E-CCEEEEEEEHHHHHHHHHHh
Confidence            3457899999988       8999999999999999999999999999  5 79999999999999877654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.48  E-value=1.1e-07  Score=71.36  Aligned_cols=59  Identities=19%  Similarity=0.282  Sum_probs=53.7

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ....+++++|.++       +.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||..||++.
T Consensus        72 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Givt~~dll~~  130 (184)
T 1pvm_A           72 PDEVPIRLVMRKP-------IPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRY  130 (184)
T ss_dssp             GGGSBGGGTSBSS-------CCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTT
T ss_pred             cccCCHHHHhCCC-------CcEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHH
Confidence            3456899999988       8999999999999999999999999999  777999999999998764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.48  E-value=2.5e-07  Score=74.55  Aligned_cols=61  Identities=20%  Similarity=0.318  Sum_probs=55.5

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ...+++++|.++       ++++++++++.+|++.|.+++...+||+  |++|+++|+||..|++..+..
T Consensus       199 ~~~~v~~im~~~-------~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 DDTLIADILNER-------VISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             TTSBHHHHSBSC-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHcCCC-------CeeecCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence            356899999888       8999999999999999999999999999  788999999999999987643

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.47  E-value=2.8e-07  Score=67.36  Aligned_cols=60  Identities=25%  Similarity=0.392  Sum_probs=53.5

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ....+++++|.++       +.++.+++++.+|++.|.++++  +||+  |++|+++|+||..|+++.+..
T Consensus        83 ~~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~--lpVv--d~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           83 LDQITVEEVMLTD-------IPRLHINDPIMKGFGMVINNGF--VCVE--NDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             TTTSBHHHHSBCS-------CCEEETTSBHHHHHHHTTTCSE--EEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             hccCCHHHhcCCC-------CceEcCCCCHHHHHHHHHhCCE--EEEE--eCCCeEEEEEEHHHHHHHHHH
Confidence            3467899999988       8999999999999999998876  9999  778999999999999987654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.45  E-value=1e-07  Score=83.18  Aligned_cols=73  Identities=15%  Similarity=0.284  Sum_probs=60.9

Q ss_pred             ccchhhhhccCCCeEEEcCC-CCHHHHHHHHHhcCCCEeeeec--Cc-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491          131 YTRVAEIMTDENKLITLPSD-ANILHAMQLMTDKHIRHVPVID--GR-IVGMISIVDVVRAVVEQQKGELKRLNEFIRG  205 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~-~~l~~a~~~~~~~~~~~lpVvd--~~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~~  205 (208)
                      ..+|+++|++  ++++++++ +++.+|++.|.+++++.+||+|  ++ ++|+||..||++.+..........++++|..
T Consensus       383 ~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~  459 (527)
T 3pc3_A          383 SLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNK  459 (527)
T ss_dssp             TSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEET
T ss_pred             CCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhcC
Confidence            5789999998  89999999 9999999999999999999999  45 9999999999999876433333445555543

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.42  E-value=2.1e-07  Score=74.68  Aligned_cols=59  Identities=29%  Similarity=0.394  Sum_probs=52.9

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ..+++++|.++       ++++++++++.++++.|.+++...+||+  |++|+++|+||..|++..+.
T Consensus       198 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          198 RTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             TCBSTTTSBSS-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHC-
T ss_pred             CCcHHHHhCCC-------CeEEeCCCCHHHHHHHHHhcCCCEEEEE--eCCCeEEEEEEHHHHHHHHH
Confidence            45778888777       8999999999999999999999999999  88899999999999988654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.41  E-value=8.6e-08  Score=83.24  Aligned_cols=108  Identities=11%  Similarity=0.165  Sum_probs=24.1

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++|++..+     ++++++++++.+|++.|.++++..+||+  |++++++|+||.+||++.+.... . ...+..
T Consensus       160 ~~~V~diM~~~~~-----~~tv~~~~sl~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~~~~~-~-~~d~~~  230 (503)
T 1me8_A          160 ETKVSDMMTPFSK-----LVTAHQDTKLSEANKIIWEKKLNALPII--DDDQHLRYIVFRKDYDRSQVCHN-E-LVDSQK  230 (503)
T ss_dssp             ---------------------------------------------------------------------CC-C-CBCTTS
T ss_pred             cCcHHHHhCCCCC-----CEEEcCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEecHHHHhhhccc-c-hhcccc
Confidence            5678899987433     7899999999999999999999999999  78899999999999988754322 1 112222


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeee-ecCc-eeE
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPV-IDGR-IVG  177 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpV-vd~~-~vG  177 (208)
                      .++.    ...++. ....+.++.|.+.+++.++| .+++ ..|
T Consensus       231 ~l~v----~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~  269 (503)
T 1me8_A          231 RYLV----GAGINT-RDFRERVPALVEAGADVLCIDSSDGFSEW  269 (503)
T ss_dssp             CBCC----EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHH
T ss_pred             cccc----ccccCc-hhHHHHHHHHHhhhccceEEecccCcccc
Confidence            2322    234555 66677788888889987666 3333 444

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.25  E-value=1.3e-06  Score=75.22  Aligned_cols=60  Identities=28%  Similarity=0.385  Sum_probs=54.7

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ...+++++|+++       ++++++++++.++++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus       217 ~~~~v~dim~~~-------~~~v~~~~~l~ea~~~m~~~~~~~lpVV--De~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          217 PRTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             TTSBGGGTSBSS-------CCCEESSSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHhCCC-------CeEEeCCCcHHHHHHHHHhcCCcEEEEE--cCCCEEEEEEehHhhHHHHH
Confidence            356889999877       8999999999999999999999999999  88999999999999998654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.00  E-value=3.4e-05  Score=66.63  Aligned_cols=59  Identities=19%  Similarity=0.340  Sum_probs=53.5

Q ss_pred             cccHHHhhcc-cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           56 NISVAEVLMT-KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        56 ~~~v~~~m~~-~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ..+++++|++ +       ++++++++++.++++.|.+++...+||+  |++++++|+||..|+++.+.
T Consensus       151 ~~~v~~im~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          151 NAPISEHMTSEH-------LVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSBTTTSCCCSC-------CCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHcCCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHHHHHHh
Confidence            4578888887 6       8899999999999999999999999999  88999999999999988754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.95  E-value=7.4e-06  Score=70.89  Aligned_cols=58  Identities=21%  Similarity=0.402  Sum_probs=3.9

Q ss_pred             cccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491           56 NISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI  122 (208)
Q Consensus        56 ~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~  122 (208)
                      ..+++++|++  +       ++++++++++.++++.|.++++..+||+  |++++++|+||..|+++.+
T Consensus       154 ~~~v~~im~~~~~-------~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          154 SKKIKDLMTPREK-------LIVAPPDISLEKAKEILHQHRIEKLPLV--SKDNKLVGLITIKDIMSVI  213 (494)
T ss_dssp             ----------------------------------------------------------------CHHHH
T ss_pred             CCcHHHHhCCCCC-------CeEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHhhh
Confidence            4678999998  6       8999999999999999999999999999  7899999999999999875

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.92  E-value=5e-06  Score=74.08  Aligned_cols=54  Identities=15%  Similarity=0.019  Sum_probs=48.5

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      +++++|+++       +.++++++++.++.+.|.+++++++||+   ++|+++|+||.+|++++
T Consensus       569 ~v~~iMt~~-------pitV~~~~~l~ea~~~M~~~~i~~lpVv---e~G~lvGIVT~~Dll~~  622 (632)
T 3org_A          569 SLVVPCDVS-------PIVVTSYSLVRQLHFLFVMLMPSMIYVT---ERGKLVGIVEREDVAYG  622 (632)
T ss_dssp             --CCSCCCC-------CCEEETTCBHHHHHHHHHHTCCSEEEEE---ETTEEEEEEEGGGTEEC
T ss_pred             ccchhhcCC-------CceecCCCcHHHHHHHHHhcCCCEEEEE---ECCEEEEEEehhhHHHH
Confidence            378899998       9999999999999999999999999999   57899999999998753

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.91  E-value=1e-05  Score=69.98  Aligned_cols=58  Identities=21%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             cccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491           56 NISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI  122 (208)
Q Consensus        56 ~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~  122 (208)
                      ..+++++|++  +       ++++++++++.++.++|.++++..+||+  |++++++|+||.+|+++..
T Consensus       146 ~~~V~~vMtp~~~-------~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          146 GDTVAAIMTPKDK-------LVTAREGTPLEEMKAKLYENRIEKMLVV--DENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             CCcHHHHhccCCC-------CEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHhhhhc
Confidence            5689999994  4       8999999999999999999999999999  8999999999999998753

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.88  E-value=1e-05  Score=69.83  Aligned_cols=99  Identities=17%  Similarity=0.219  Sum_probs=17.6

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++|+++       ++++++++++.++++.|.++++..+||+  |++++++|+||.+||++.. ...     ....
T Consensus       149 ~~~v~~im~~~-------~~~v~~~~~l~eal~~m~~~~~~~lpVV--de~g~lvGiiT~~Dil~~~-~~~-----~~~~  213 (486)
T 2cu0_A          149 GKLVKELMTKE-------VITVPESIEVEEALKIMIENRIDRLPVV--DERGKLVGLITMSDLVARK-KYK-----NAVR  213 (486)
T ss_dssp             --------------------------------------------------------------------CCT-----TCCB
T ss_pred             CCCHHHHccCC-------CeEECCcCcHHHHHHHHHHcCCCEEEEE--ecCCeEEEEEEHHHHHHhh-hcc-----cccc
Confidence            45788899877       8899999999999999999999999999  7889999999999988753 111     1111


Q ss_pred             hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec
Q 028491          136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID  172 (208)
Q Consensus       136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd  172 (208)
                      +.+..-.-...+..+ . .+.+..+.+.+++.+ |++
T Consensus       214 ~~~g~~~v~~~~~~~-~-~~~a~~l~~~gvd~l-vvd  247 (486)
T 2cu0_A          214 DENGELLVAAAVSPF-D-IKRAIELDKAGVDVI-VVD  247 (486)
T ss_dssp             CTTSCBCCEEEECTT-C-HHHHHHHHHTTCSEE-EEE
T ss_pred             ccCCceeecceechh-h-HHHHHHHHHhcCCce-EEE
Confidence            111110001223443 3 566778888888875 555

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.79  E-value=1.4e-05  Score=68.92  Aligned_cols=57  Identities=19%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ..+|+++|+++       +++++++.++.+|.++|.++++..+|||  |++++++|+||.+|+.+.
T Consensus       199 ~~~V~evMT~~-------lvt~~~~~~leeA~~iL~~~kieklpVV--d~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          199 ETPIKSVMTTE-------VVTGSSPITLEKANSLLRETKKGKLPIV--DSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ceEhhhhcccc-------eEEecCCCCHHHHHHHHHHccccceeEE--ccCCcEEEEEEechhhhh
Confidence            56899999998       9999999999999999999999999999  899999999999998764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.75  E-value=1.5e-05  Score=68.92  Aligned_cols=59  Identities=19%  Similarity=0.369  Sum_probs=41.5

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ..+++++|++..+     ++++++++++.++.+.|.++++..+||+  |++|+++|+||.+|+++.
T Consensus       148 ~~~v~diM~p~~~-----~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          148 TKSVAAVMTPKER-----LATVKEGATGAEVQEKMHKARVEKILVV--NDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             TSBGGGTSEEGGG-----CCEEECC----CGGGTCC---CCCEEEE--CTTSBCCEEECCC-----
T ss_pred             CCcHHHHhcCCCC-----CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEeehHhHHHHh
Confidence            5678999994211     7899999999999999999999999999  899999999999998874

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.47  E-value=1e-05  Score=70.40  Aligned_cols=58  Identities=14%  Similarity=0.295  Sum_probs=41.0

Q ss_pred             ccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           55 ENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        55 ~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ...+++++|++  +       ++++++++++.++.+.|.+++...+||+  |++++++|+||..|+++.
T Consensus       171 ~~~~v~~vm~~~~~-------~~tv~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          171 HTTLLSEVMTPRIE-------LVVAPAGVTLKEANEILQRSKKGKLPIV--NDCDELVAIIARTDLKKN  230 (514)
T ss_dssp             ----------CCBC-------CCCEETTCCSTTTTTHHHHHTCSCCCEE--SSSSCCC----CCCCSSC
T ss_pred             CCCCHHHHhCCCCC-------CeEECCCCCHHHHHHHHHHcCCCcccEE--CCCCeEEEEEEHHHHHHH
Confidence            35678999998  6       8999999999999999999999999999  889999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-18
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	3e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-14
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	0.002
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	4e-14
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	8e-14
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-13
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-13
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.003
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-12
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	6e-05
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-11
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-11
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-11
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	4e-11
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	5e-11
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	7e-11
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	0.004
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	7e-11
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	8e-11
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	8e-11
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	1e-09
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-09
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	4e-09
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	4e-09
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	5e-09
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.002
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	1e-08
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	2e-07
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	3e-07
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	5e-07

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 76.0 bits (186), Expect = 2e-18
 Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 10/133 (7%)

Query: 58  SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERD 117
           +V  +L  KG   V        DD+V +A++ MA  NIG+L+V+K  +     GI TERD
Sbjct: 3   TVKHLLQEKGHTVV----AIGPDDSVFNAMQKMAADNIGALLVMKDEKLV---GILTERD 55

Query: 118 YLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIV 176
           + RK     +  K T+V EIMT +   +    +      M L+T+  +RH+PV+D G+++
Sbjct: 56  FSRKSYLLDKPVKDTQVKEIMTRQVAYV--DLNNTNEDCMALITEMRVRHLPVLDDGKVI 113

Query: 177 GMISIVDVVRAVV 189
           G++SI D+V+  +
Sbjct: 114 GLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 134 VAEIMTDENK-LITLPSDANILHAMQLMTDKHIRHVPV-IDGRIVGMISIVDVVRAVVEQ 191
           V  ++ ++   ++ +  D ++ +AMQ M   +I  + V  D ++VG+++  D  R     
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL 63

Query: 192 Q 192
            
Sbjct: 64  D 64

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (158), Expect = 2e-14
 Identities = 22/140 (15%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 56  NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTE 115
            I + ++ +   D+       C+    V D ++ + Q  + S+ ++      ++  ++  
Sbjct: 5   KIPIGDLNIITQDNMK----SCQMTTPVIDVIQMLTQGRVSSVPIIDE--NGYLINVYEA 58

Query: 116 RDYLRKIVGQGRSPKYTRVAEIMTDENKL----ITLPSDANILHAMQLMTDKHIRHVPVI 171
            D L  I G   +     V E +   +       T   +  +   M  +    +    V+
Sbjct: 59  YDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVV 118

Query: 172 D--GRIVGMISIVDVVRAVV 189
           D  GR+VG++++ D+++ ++
Sbjct: 119 DDVGRLVGVLTLSDILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQ 191
           +  I  D   + +      ++  +Q++T   +  VP+ID  G ++ +    DV+  +   
Sbjct: 11  LNIITQDN--MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG 68

Query: 192 Q 192
            
Sbjct: 69  I 69

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 64.0 bits (155), Expect = 4e-14
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           L  +   +V++A + M + ++GSLVV    +  ++ G FT+ D +R+++  G        
Sbjct: 16  LGVKPSTSVQEASRLMMEFDVGSLVV--INDDGNVVGFFTKSDIIRRVIVPGLPYDIPV- 72

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQ 191
                    LIT   +  +   ++ M +  I+H+ + + G+IVG+ ++ D++ A   +
Sbjct: 73  --ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRR 128

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 63.2 bits (153), Expect = 8e-14
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 7/116 (6%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQH-IAGIFTERDYLRKIVGQGRSPKYTR 133
           +     D V D  +  A+H    + +   G     + GI + RD                
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLK----EEEHDRF 62

Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
           + EIMT    L+  P+   +  A +++       +P+++    +V +I+  D+ + 
Sbjct: 63  LEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN 118

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.9 bits (152), Expect = 2e-13
 Identities = 19/140 (13%), Positives = 55/140 (39%), Gaps = 12/140 (8%)

Query: 58  SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERD 117
           S+ E+ +    +        R+   V  A+    QH + +L      E+  +  I+++ D
Sbjct: 10  SLEELQIGTYANIA----MVRTTTPVYVALGIFVQHRVSALP--VVDEKGRVVDIYSKFD 63

Query: 118 YLRKIVGQGRSPKYTRVAEIMTDEN----KLITLPSDANILHAMQLMTDKHIRHVPVID- 172
            +     +  +     V + +   +     ++       +   +  + +  +  + V+D 
Sbjct: 64  VINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE 123

Query: 173 -GRIVGMISIVDVVRAVVEQ 191
              + G++S+ D+++A+V  
Sbjct: 124 HDVVKGIVSLSDILQALVLT 143

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.2 bits (150), Expect = 2e-13
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
           C    +T+  A + M +H+IG+L +    +   + G+ T+RD + K +  G  P      
Sbjct: 13  CVGEHETLTAAAQYMREHDIGALPICG--DDDRLHGMLTDRDIVIKGLAAGLDPNTATAG 70

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAV 188
           E+  D    +   ++A+I   + +M +  +R VPVI   R+VG+++  D+ R +
Sbjct: 71  ELARDSIYYV--DANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI 171
           T   +IM     +  +     +  A Q M +  I  +P+ 
Sbjct: 1   TTARDIMNAG--VTCVGEHETLTAAAQYMREHDIGALPIC 38

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 1e-12
 Identities = 16/153 (10%), Positives = 53/153 (34%), Gaps = 25/153 (16%)

Query: 54  LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIF 113
           +++    ++ +      V       +   V+ A   +  + + +  +    ++Q   G+ 
Sbjct: 10  MKSHRCYDL-IPTSSKLV----VFDTSLQVKKAFFALVTNGVRAAPLW-DSKKQSFVGML 63

Query: 114 TERDYLRKIVGQGRSPK--------------YTRVAEIMTDENKLITLPSDANILHAMQL 159
           T  D++  +    +S                     +        + +  +A++  A+  
Sbjct: 64  TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISPNASLFDAVSS 121

Query: 160 MTDKHIRHVPVID---GRIVGMISIVDVVRAVV 189
           +    I  +PVID   G  + +++   +++ + 
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRILKFLK 154

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 6e-05
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI---DGRIVGMISIVDVVRAVV 189
           R  +++   +KL+   +   +  A   +    +R  P+        VGM++I D +  + 
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 73

Query: 190 EQQK 193
              K
Sbjct: 74  RYYK 77

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 1e-11
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 26/161 (16%)

Query: 59  VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
           +A  +M    +     +  +   TVED    +++       V+   E Q + G    RD 
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 119 LR-----------------------KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILH 155
           +                               +P   ++  I+       T+     +  
Sbjct: 64  IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS--PFTVTDLTPMEI 121

Query: 156 AMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVVEQQKGE 195
            + +     +R   V   GR++G+I+  DV++ + +    +
Sbjct: 122 VVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMANQD 162

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.0 bits (139), Expect = 1e-11
 Identities = 23/123 (18%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
               + TV DAVK M ++++  LV     +  +  G+ +ER  +++ + + + P      
Sbjct: 15  TVNWNTTVFDAVKIMNENHLYGLV--VKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP-- 70

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
             +     +  + SD ++      +++  +    V+D  GR+VG++++ D+ R +     
Sbjct: 71  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASI 130

Query: 194 GEL 196
            ++
Sbjct: 131 TDI 133

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 57.2 bits (137), Expect = 2e-11
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 8/123 (6%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
                  T+ DA   M   +I  + +      + + GI ++RD L       +       
Sbjct: 13  HTLLRTHTLNDAKHLMEALDIRHVPI--VDANKKLLGIVSQRDLLAAQESSLQRSAQGDS 70

Query: 135 AEIMTDE-----NKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAV 188
               T         + ++   A +  +   M    I  +PV+    +VG+I+  D V   
Sbjct: 71  LAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA 130

Query: 189 VEQ 191
           +  
Sbjct: 131 INL 133

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 56.4 bits (135), Expect = 4e-11
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
                +  V +A + M ++ I  + +++    + + GI T RD             Y   
Sbjct: 8   FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS-------DYNAP 60

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
                    L+T     ++  A +++ +  I  +P++D  GR+ G+I+I D+ + +
Sbjct: 61  ISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 116

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 55.6 bits (133), Expect = 5e-11
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
                 ++ED ++N  ++  GS VV+K G +  I   +   +                V 
Sbjct: 12  TIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEA------IAEGDDLAEVK 65

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRA 187
                E  L+T+   A I  A + M    +  + V +   I+G+IS  D++RA
Sbjct: 66  VWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRA 118

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 56.2 bits (134), Expect = 7e-11
 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 30/157 (19%)

Query: 56  NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTE 115
           NI V ++ M +            S  T  D +  + Q  +     +   +   + G    
Sbjct: 10  NIQVGDI-MVR------DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDR 62

Query: 116 RDYLRKIVGQGRSPKYTRVAEIMTDEN----------------------KLITLPSDANI 153
            +    +  +  + +     E++T E                           L    ++
Sbjct: 63  TEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSL 122

Query: 154 LHAMQLMTDKHIRHVPVID-GRIVGMISIVDVVRAVV 189
                L +   +    V   G++VG++++ ++  A+ 
Sbjct: 123 QKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE 159

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 3/50 (6%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG 124
                  +++      +   +    V   G    + G+    +    I G
Sbjct: 114 FQLVEGTSLQKTHTLFSLLGLDRAYVTSMG---KLVGVVALAEIQAAIEG 160

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 55.6 bits (133), Expect = 7e-11
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 54  LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIF 113
           +E   V E  M          +    D  + D  K M + NIGS++V+         GI 
Sbjct: 1   MEEEIVKEY-MKT------QVISVTKDAKLNDIAKVMTEKNIGSVIVVD---GNKPVGII 50

Query: 114 TERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID- 172
           TERD ++ I                +          D+ I  A+ LM   +IRH+PV+D 
Sbjct: 51  TERDIVKAIGKGKSLETKAEEFMTASLITI----REDSPITGALALMRQFNIRHLPVVDD 106

Query: 173 -GRIVGMISIVDVVRAVVE 190
            G + G+ISI D+ RA+ +
Sbjct: 107 KGNLKGIISIRDITRAIDD 125

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.8 bits (133), Expect = 8e-11
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 21/135 (15%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL--------------R 120
                D  +E+ V  + +  +   V +    +    G+      L               
Sbjct: 15  TVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLV--GMIPVMHLLKVSGFHFFGFIPKEE 72

Query: 121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGM 178
            I    +       +EIM D    + +  D  +  A++LM D +I+ +PV+D  G IVG 
Sbjct: 73  LIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGD 129

Query: 179 ISIVDVVRAVVEQQK 193
           ++ ++++ A+ + ++
Sbjct: 130 LNSLEILLALWKGRE 144

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 56.1 bits (134), Expect = 8e-11
 Identities = 17/123 (13%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
               +  V D +K +A+ NI ++ +     +  +  ++   D +  I     S     V 
Sbjct: 16  TASMETKVYDVIKMLAEKNISAVPI--VNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVG 73

Query: 136 EIMT----DENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVV 189
           E +     + + + T  +   +      +    +  + V+D   ++ G++S+ D++  ++
Sbjct: 74  EALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII 133

Query: 190 EQQ 192
             +
Sbjct: 134 YDK 136

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPG---EQQHIAGIFTERDYLRKIVGQGRSPKY 131
           +  R   TVE+ ++ + +    +  +       E+  + G+ + RD          +   
Sbjct: 12  VAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL-------IVADPR 64

Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI--DGRIVGMISIVDVVRAVV 189
           TRVAEIM  +   + + +D +     +LM D     +PV+  +GR+VG++++ DV+  + 
Sbjct: 65  TRVAEIMNPKV--VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE 122

Query: 190 EQQKGELKRL 199
            +   ++ +L
Sbjct: 123 AEATEDIHKL 132

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 51.5 bits (122), Expect = 2e-09
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
                 TV + +  M Q+     +V     + H  G+  + D L               +
Sbjct: 13  MVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLL---------DLDLDSS 61

Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQ 191
                      +  + NI HA+ L  +    ++PV+D   R+ G +S+ D + A++E 
Sbjct: 62  VFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA 119

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 51.2 bits (121), Expect = 4e-09
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVV-----LKPGEQQHIAGIFTERDYLRKIVGQGRSPK 130
               +D +  A K + +  IG ++V           + +              G      
Sbjct: 13  ILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHIS 72

Query: 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
            T + + MT     +   SD     A+ +M  ++   +PV+D   + VG+++  + +   
Sbjct: 73  TTPIIDYMTPNPVTVYNTSDEF--TAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY 130

Query: 189 VE 190
            +
Sbjct: 131 KD 132

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 50.6 bits (120), Expect = 4e-09
 Identities = 16/122 (13%), Positives = 51/122 (41%), Gaps = 14/122 (11%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV---GQGRSPKY 131
           +   ++ TV  A+  +      +  +       +   +  + ++L  ++       +   
Sbjct: 12  VSIVANQTVRSAMYVLKNQADMAETI-------YYVYVVDQENHLVGVISLRDLIVNDDD 64

Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVV 189
           T +A+I+ +   +I++    +     Q + D     VPV D    ++G++++ D++  + 
Sbjct: 65  TLIADILNER--VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 122

Query: 190 EQ 191
           ++
Sbjct: 123 DE 124

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.3 bits (119), Expect = 5e-09
 Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +      T   A++   ++ + S  V+    +                            
Sbjct: 12  VTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILV-----------NPDEE 60

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQ 191
              M  +  +  +  +  +  A +LM +   R V V+D  G+ VG++++ D++R    +
Sbjct: 61  QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK 119

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 31/143 (21%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQH--------------------------- 108
                  ++ A+K +   N  +L V+                                  
Sbjct: 16  IVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASS 75

Query: 109 IAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHV 168
                 E                  VAEIMT +   I       +      M    I  +
Sbjct: 76  EEEWILESHPTLLFEKFELQLPNKPVAEIMTRDV--IVATPHMTVHEVALKMAKYSIEQL 133

Query: 169 PVID--GRIVGMISIVDVVRAVV 189
           PVI   G ++G+I   D+++ +V
Sbjct: 134 PVIRGEGDLIGLIRDFDLLKVLV 156

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 4/40 (10%), Positives = 14/40 (35%), Gaps = 2/40 (5%)

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID 172
            +         +  +     +  A++ +   +   +PV+D
Sbjct: 5   EIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVD 42

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 49.2 bits (116), Expect = 1e-08
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 75  LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
           +      T+ +    +A++ +G  V+      +    + +ERD LR +  +         
Sbjct: 12  VSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGP--- 68

Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRA 187
              M   N  IT+     +  A + M   +IRHV V++  G +VG++SI D+   
Sbjct: 69  --AMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 7/125 (5%)

Query: 76  CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKY---T 132
               +  ++ AVK M +     L V+    +                      P Y    
Sbjct: 14  TIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGK 73

Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
            V ++M      +T+   A++  A   M  K I  + +++    I G+I+  D++ A+  
Sbjct: 74  VVKDVMVTNL--VTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 131

Query: 191 QQKGE 195
               E
Sbjct: 132 ILVME 136

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.4 bits (106), Expect = 3e-07
 Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 9/137 (6%)

Query: 57  ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTER 116
            +V +  M + D         +  + +E A+  + +    ++ V        + G+    
Sbjct: 2   ATVGQF-MIEADKVA----HVQVGNNLEHALLVLTKTGYTAIPV--LDPSYRLHGLIGTN 54

Query: 117 DYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI--LHAMQLMTDKHIRHVPVIDGR 174
             +  I G  R          + +           N   +    ++ +     V   +  
Sbjct: 55  MIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQV 114

Query: 175 IVGMISIVDVVRAVVEQ 191
             G+ +   V++ + + 
Sbjct: 115 FEGIFTRRVVLKELNKH 131

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 25/176 (14%), Positives = 58/176 (32%), Gaps = 34/176 (19%)

Query: 49  TEEKGLENIS------VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLK 102
           T++  L+ I        +  ++      +           V+ ++  +  +NI S  +  
Sbjct: 5   TQKGALKEIQAFIRSRTSYDVLPTSFRLI----VFDVTLFVKTSLSLLTLNNIVSAPLW- 59

Query: 103 PGEQQHIAGIFTERDYLRKIVGQGRSP----------------KYTRVAEIMTDENKLIT 146
             E    AG+ T  D++  I    +S                       +I     + I 
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 147 LPSDANILHAMQLMTDKHIRHVPVID-------GRIVGMISIVDVVRAVVEQQKGE 195
           +    +++ A   M+    R +P+ID         IV +++   +++ +    K  
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.93
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.91
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.91
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.91
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.91
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.9
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.9
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.89
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.88
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.88
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.88
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.88
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.88
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.87
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.86
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.86
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.85
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.84
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.84
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.84
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.83
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.82
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.82
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.81
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.81
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.79
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.06
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.99
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.96
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.86
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.85
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.85
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.84
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.84
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.82
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.81
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.81
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.8
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.79
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.78
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.77
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.68
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.67
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.64
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.62
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.61
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.58
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.57
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.57
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.55
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.53
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.49
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	92.83
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	89.63

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=1.2e-25  Score=159.08  Aligned_cols=121  Identities=25%  Similarity=0.539  Sum_probs=112.1

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      .+++|+|+++       ++++.+++|+.+|++.|.+++++++||+  |++|+++|+||.+||+..++.++.......+++
T Consensus         1 tt~~diM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~   71 (123)
T d1y5ha3           1 TTARDIMNAG-------VTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGE   71 (123)
T ss_dssp             CCHHHHSEET-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHH
T ss_pred             CCHHHhcCCC-------CcEECCcCcHHHHHHHHHHcCCCceEEE--eccchhhhhhhhhhHhhhhhhcCCCcccceEEE
Confidence            3789999998       9999999999999999999999999999  788999999999999887777766666778999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHH
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAV  188 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~  188 (208)
                      +|.+  +++++++++++.+|++.|.+++++++||+|++ ++|+||..|+++++
T Consensus        72 im~~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          72 LARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL  122 (123)
T ss_dssp             HHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTC
T ss_pred             Eeec--cceeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHhhC
Confidence            9998  89999999999999999999999999999988 99999999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.91  E-value=4.8e-24  Score=153.77  Aligned_cols=126  Identities=20%  Similarity=0.285  Sum_probs=112.9

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC-------CCC
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG-------RSP  129 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~-------~~~  129 (208)
                      ++|+|+|+++       +.++.+++|+.+|++.|.+++++++||+  |++++++|+||.+||++.+....       ...
T Consensus         2 i~v~diM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~lpVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~   72 (139)
T d2o16a3           2 IKVEDMMTRH-------PHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDSLA   72 (139)
T ss_dssp             CBGGGTSEES-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC---------
T ss_pred             EEHHHhCcCC-------CeEECCcCCHHHHHHHHHHcCCCeeeee--cccccccccccHHHHHHHHHhhhhhhhcccccc
Confidence            5789999998       9999999999999999999999999999  88999999999999987654421       123


Q ss_pred             CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhH
Q 028491          130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~  193 (208)
                      ...+++++|++  ++.++++++++.+|++.|.+++++++||+|++ ++|+||.+|+++++.....
T Consensus        73 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~~~~~~  135 (139)
T d2o16a3          73 FETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLE  135 (139)
T ss_dssp             CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred             cccchhHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHHHHHHh
Confidence            46789999998  89999999999999999999999999999988 9999999999999987654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=3.3e-24  Score=155.27  Aligned_cols=124  Identities=19%  Similarity=0.409  Sum_probs=114.9

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      ++|+++|+++       +.++++++|+.+|++.|.+++++++||+  |++++++|+||.+|+++++...+......++++
T Consensus         3 m~v~dim~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~~V~--d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~   73 (142)
T d1pvma4           3 MRVEKIMNSN-------FKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRL   73 (142)
T ss_dssp             CBGGGTSBTT-------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGG
T ss_pred             EEHHHhCCCC-------CcEECCcCcHHHHHHHHHHCCCceEeee--ccCCcccceEEeechhhhhhhhccccccccccc
Confidence            5899999998       9999999999999999999999999999  888999999999999888777666666778999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      +|.+  +++++++++++.+|++.|.+++++++||+|++  ++|+||..||++++.+.
T Consensus        74 im~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4          74 VMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             TSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHH
T ss_pred             cccc--ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhh
Confidence            9998  89999999999999999999999999999865  99999999999988654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.91  E-value=4.8e-24  Score=151.52  Aligned_cols=124  Identities=35%  Similarity=0.563  Sum_probs=111.4

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      .+|+++|..++.+    ++++++++|+.+|++.|.+++++++||+  + +++++|+||.+|+++++...+......++++
T Consensus         2 ~tV~dim~~k~~~----v~~i~~~~tl~~a~~~m~~~~~~~vpV~--~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~   74 (127)
T d2rc3a1           2 KTVKHLLQEKGHT----VVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQVKE   74 (127)
T ss_dssp             CBHHHHHHHHCCC----CCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGG
T ss_pred             ccHHHHHccCCCc----cEEECCcCcHHHHHHHHHHcCCCEEEEE--E-CCeEEEEEEccchhhhhhhhcccccceeEee
Confidence            3789999864322    8999999999999999999999999999  4 6899999999999887766665566789999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHH
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVV  189 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~  189 (208)
                      +|++  ++.++++++++.+|++.|.+++++++||+|++ ++|+||..|+++++.
T Consensus        75 im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          75 IMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             TSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             eccc--eeEEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHh
Confidence            9998  89999999999999999999999999999988 999999999999874

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=6.8e-24  Score=151.72  Aligned_cols=124  Identities=26%  Similarity=0.483  Sum_probs=114.3

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      .+|+++|+++       ++++++++|+.+|++.|.+++++++||+  |++++++|+||.+|+++++..++. ....++++
T Consensus         5 ~pV~~im~~~-------~~~v~~~~t~~~a~~~m~~~~~~~~~Vv--d~~~~~~Giit~~di~~~~~~~~~-~~~~~v~~   74 (132)
T d2yzia1           5 APIKVYMTKK-------LLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVER   74 (132)
T ss_dssp             SBGGGTCBCC-------CCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGG
T ss_pred             CcHHHHcCCC-------CeEECCcCcHHHHHHHHHHcCCcEEEEe--cccceeeeeeeHHHHHHHHhhccC-ccceeEee
Confidence            4799999998       9999999999999999999999999999  889999999999999887766554 45789999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhh
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~  192 (208)
                      +|.+  ++.++++++++.++++.|.+++++++||++++ ++|+||..|+++++.+..
T Consensus        75 im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1          75 IMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             TCBC--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred             cccc--cccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHHH
Confidence            9998  89999999999999999999999999999988 999999999999987654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.90  E-value=2.9e-23  Score=147.41  Aligned_cols=123  Identities=37%  Similarity=0.541  Sum_probs=111.1

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV  134 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v  134 (208)
                      ++..|+++|+++       ++++++++|+.+|.+.|.+++++++||+  + +++++|+|+.+|+++++..+.  ....++
T Consensus         2 ~~~~V~d~m~~~-------~v~v~~~~tl~~a~~~m~~~~~~~~pV~--d-~~~~~Givt~~dl~~~~~~~~--~~~~~v   69 (127)
T d2ef7a1           2 EEEIVKEYMKTQ-------VISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIGKGK--SLETKA   69 (127)
T ss_dssp             CCCBGGGTSBCS-------CCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTTC--CTTCBG
T ss_pred             CccCHHHhCCCC-------CeEECCcCcHHHHHHHHHHcCCceEEee--c-ccchhhhcchhHHHHHHHhhc--cccchh
Confidence            467899999998       9999999999999999999999999999  4 578999999999988765443  346789


Q ss_pred             hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      .++|.+  ++.++++++++.+|++.|.+++++++||+|++  ++|+||..|+++++.+.
T Consensus        70 ~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~~  126 (127)
T d2ef7a1          70 EEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (127)
T ss_dssp             GGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hhhhhh--hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhh
Confidence            999998  89999999999999999999999999999775  99999999999999753

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=3.4e-23  Score=145.65  Aligned_cols=118  Identities=28%  Similarity=0.371  Sum_probs=108.2

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhh
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI  137 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~i  137 (208)
                      +|+++|+++       ++++++++|+.+|++.|.+++++++||+  + +|+++|+||.+||++++..+. ...+.++.++
T Consensus         1 kV~diM~~~-------~~~v~~~~sl~ea~~~~~~~~~~~~~V~--~-~~~~~Gvit~~Di~~~l~~~~-~~~~~~v~~~   69 (120)
T d1pbja3           1 RVEDVMVTD-------VDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIAEGD-DLAEVKVWEV   69 (120)
T ss_dssp             CHHHHCBCS-------CCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHHHTC-CTTTSBHHHH
T ss_pred             ChHHhCCCC-------CeEECCcCcHHHHHHHHHHcCceEEEEE--e-CCcEEEEEEeeeccccccccc-cccceeEeee
Confidence            478999998       9999999999999999999999999999  3 589999999999998776554 4557899999


Q ss_pred             hccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHH
Q 028491          138 MTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAV  188 (208)
Q Consensus       138 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~  188 (208)
                      |.+  ++.++++++++.+|+..|.+++++++||++++ ++|+||.+|++++.
T Consensus        70 m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          70 MER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  119 (120)
T ss_dssp             CBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             ccc--ccccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhcC
Confidence            998  89999999999999999999999999999988 99999999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.89  E-value=4.3e-23  Score=146.56  Aligned_cols=117  Identities=19%  Similarity=0.404  Sum_probs=106.4

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhc-----CCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQH-----NIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +++.+|+++       ++++++++|+.+|++.|+++     ++.++||+  |++++++|+++.++++.+       ....
T Consensus         2 taG~iM~~d-------~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv--d~~~~l~G~v~~~~l~~~-------~~~~   65 (127)
T d2ouxa2           2 TAGAIMTTE-------FVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIVN-------DDDT   65 (127)
T ss_dssp             BHHHHCBSC-------CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTTS-------CTTS
T ss_pred             ChhHhCCCC-------cEEECCCCcHHHHHHHhHhhcccccceeeeEEE--ecCCeEEEEEEeeccccc-------cccE
Confidence            689999999       99999999999999999876     37899999  899999999999997642       4578


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhh
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~  192 (208)
                      +++++|.+  +++++++++++.+|++.|.+++++++||+|++  ++|+||..|+++.+.++.
T Consensus        66 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~eea  125 (127)
T d2ouxa2          66 LIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  125 (127)
T ss_dssp             BHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             EhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHHh
Confidence            99999998  89999999999999999999999999999864  999999999999987653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.1e-22  Score=143.21  Aligned_cols=117  Identities=21%  Similarity=0.330  Sum_probs=108.3

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      ++|+++|+++       ++++++++|+.+|++.|.+++.+++||+  |++++++|+|+.+|+++.       ....++.+
T Consensus         1 m~v~~~m~~~-------~~~v~~~~tv~ea~~~m~~~~~~~v~Vv--d~~~~~~Gii~~~dl~~~-------~~~~~v~~   64 (121)
T d1vr9a3           1 MKVKKWVTQD-------FPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLDL-------DLDSSVFN   64 (121)
T ss_dssp             CBGGGGCBSC-------SCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTTS-------CTTSBSGG
T ss_pred             CCchhhhcCC-------CeEECCCCCHHHHHHhhhhcCcEEEEEE--eCCceeEEEeehhhhhhh-------hccccccc
Confidence            4789999999       9999999999999999999999999999  889999999999998652       34678999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      +|..  +++++++++++.++++.|.+++...+||+|++  ++|+||..|+++++.+.
T Consensus        65 ~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          65 KVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             GCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             cccC--ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence            9998  88999999999999999999999999999876  99999999999999865

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.6e-23  Score=147.76  Aligned_cols=117  Identities=18%  Similarity=0.332  Sum_probs=89.2

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      ++|+++|+++       ++++++++|+.+|++.|.+++++++||+  |++|+++|+|+.+|++.+       ....++.+
T Consensus         1 m~v~diM~~~-------~v~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~G~it~~dl~~~-------~~~~~~~~   64 (122)
T d2yzqa2           1 MRVKTIMTQN-------PVTITLPATRNYALELFKKYKVRSFPVV--NKEGKLVGIISVKRILVN-------PDEEQLAM   64 (122)
T ss_dssp             CBHHHHSEES-------CCCEESSCC------------CCEEEEE--CTTCCEEEEEESSCC-----------------C
T ss_pred             CCcccccCCC-------CEEECCcCcHHHHHHHHHHcCCcEEEEE--eccccchhhhhcchhhhh-------hcccchhh
Confidence            4789999998       9999999999999999999999999999  889999999999998764       34568999


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      +|.+  +++++++++++.+|+..|.+++++++||+|++  ++|+||..|+++++.++
T Consensus        65 ~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          65 LVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             CCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             cccc--ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhH
Confidence            9998  89999999999999999999999999999876  99999999999887654

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=3.2e-23  Score=150.33  Aligned_cols=122  Identities=24%  Similarity=0.450  Sum_probs=109.7

Q ss_pred             cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcC-----CcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491           58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHN-----IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT  132 (208)
Q Consensus        58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~-----~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~  132 (208)
                      +++++|+++       ++++++++|+.+|++.|++++     +..+||+  |++++++|+++.+|++.+       ....
T Consensus         2 taG~iM~~~-------~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv--d~~~~l~G~v~~~dl~~~-------~~~~   65 (144)
T d2yvxa2           2 EAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA-------DPRT   65 (144)
T ss_dssp             SSGGGCBSC-------CCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEB--CTTCBBCCBCBHHHHTTS-------CTTC
T ss_pred             CcccccCCC-------CEEECCCCcHHHHHHHHHHhcccccceeeeEEe--cCCCCEecccchhhhhhc-------cccc
Confidence            678999999       999999999999999998763     7889999  899999999999997652       3568


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHH
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELK  197 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~  197 (208)
                      ++.++|.+  +++++.+++++.+|++.|.+++++++||+|++  ++|+||..|+++.+.++..+...
T Consensus        66 ~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~~ed~~  130 (144)
T d2yvxa2          66 RVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDIH  130 (144)
T ss_dssp             BSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             chHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHhHHHHH
Confidence            89999998  89999999999999999999999999999875  99999999999999887665443

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=1.5e-22  Score=145.82  Aligned_cols=128  Identities=21%  Similarity=0.234  Sum_probs=113.3

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC-----CCCCc
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG-----RSPKY  131 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~-----~~~~~  131 (208)
                      .+|+++|+++       ++++++++|+.+|.+.|.+++++.+||+  +++++++|+++..|+++.+....     .....
T Consensus         2 ~~V~~iMt~~-------v~~v~~~~tl~~a~~~m~~~~~~~ipVv--~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~   72 (141)
T d3ddja1           2 FPVKVFMSTK-------VQTIYKEVRLDQAVKLMLRRGFRRLPVI--DDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYG   72 (141)
T ss_dssp             CBHHHHSBCS-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHT
T ss_pred             EeeHHhCcCC-------CeEEcCcCcHHHHHHHHHHcCCCeeecc--cccCccccccccccchhhhhccccccccccccC
Confidence            4799999999       9999999999999999999999999999  88999999999999887654321     11245


Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHH
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGE  195 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~  195 (208)
                      .+++++|++  +++++++++++.++++.|.+++++++||+|++  ++|+||.+|+++.+.+....+
T Consensus        73 ~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~~~~  136 (141)
T d3ddja1          73 KVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVME  136 (141)
T ss_dssp             CBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhCc--ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHHhhh
Confidence            789999998  89999999999999999999999999999865  999999999999998765543

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=2e-22  Score=143.91  Aligned_cols=124  Identities=15%  Similarity=0.253  Sum_probs=108.3

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC----CCCcc
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR----SPKYT  132 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~----~~~~~  132 (208)
                      .+|+++|.+..+     ++++++++|+.+|++.|.+++++++||+  |++|+++|+++.+|+++++.....    .....
T Consensus         2 ~tv~~~mip~~~-----v~~v~~~~tl~~a~~~m~~~~~s~~pVv--d~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~   74 (132)
T d1yava3           2 ATVGQFMIEADK-----VAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI   74 (132)
T ss_dssp             CBHHHHSEEGGG-----SCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTS
T ss_pred             CCHHHccccccc-----eEEEcCCCCHHHHHHHHHhhCCCceEEe--ecccccccEEEcchhHHHhhccccccccccccc
Confidence            589999987644     8999999999999999999999999999  788999999999999987654321    12356


Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      +++++|.+  ++.++++++++.+++..|.+++  .+||+|++  ++|+||.+|+++++.+.
T Consensus        75 ~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          75 TVEEVMLT--DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             BHHHHSBC--SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cccccccc--cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            89999998  8999999999999999998764  59999875  99999999999998764

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=2.3e-22  Score=147.29  Aligned_cols=124  Identities=22%  Similarity=0.302  Sum_probs=107.4

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc--------
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ--------  125 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~--------  125 (208)
                      +...+++++|.++       ++++.+++++.+|++.|.+++++++||+  |++|+++|+||..|+++.+...        
T Consensus         1 ~~~~~v~~~m~r~-------v~~v~~~~~l~~a~~~m~~~~~~~lPVv--d~~~~lvG~it~~Dl~~~~~~~~~~~~~~~   71 (156)
T d2yzqa1           1 YKGVEIEPYYQRY-------VSIVWEGTPLKAALKALLLSNSMALPVV--DSEGNLVGIVDETDLLRDSEIVRIMKSTEL   71 (156)
T ss_dssp             GGGCBSTTTSBSC-------CCCEETTSBHHHHHHHHHTCSSSEEEEE--CTTSCEEEEEEGGGGGGCGGGCC-------
T ss_pred             CCCCCHHHHhcCC-------CeEECCcCcHHHHHHHHHHcCCCEEEEE--eCCCCceeEEeeeechhhhccccccccccc
Confidence            3567899999999       9999999999999999999999999999  8899999999999976432110        


Q ss_pred             ---------------------CCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHH
Q 028491          126 ---------------------GRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIV  182 (208)
Q Consensus       126 ---------------------~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~  182 (208)
                                           .......++.++|++  ++.++++++++.++++.|.+++++++||+|++  ++|+||++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~  149 (156)
T d2yzqa1          72 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDF  149 (156)
T ss_dssp             -------------------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHH
T ss_pred             ccchhhhhhhhhhhhhhHHHhhhcccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHH
Confidence                                 001245689999998  89999999999999999999999999999865  99999999


Q ss_pred             HHHHHH
Q 028491          183 DVVRAV  188 (208)
Q Consensus       183 dll~~~  188 (208)
                      |+++++
T Consensus       150 Dil~~l  155 (156)
T d2yzqa1         150 DLLKVL  155 (156)
T ss_dssp             HHGGGG
T ss_pred             HHHHHh
Confidence            999875

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.86  E-value=6.3e-22  Score=145.14  Aligned_cols=125  Identities=11%  Similarity=0.147  Sum_probs=108.0

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC--------
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR--------  127 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~--------  127 (208)
                      .++|+|+|+++       ++++++++|+.+|++.|.+++++++||++.++++.++|+++..|++.++.....        
T Consensus        10 ~~~V~diM~~~-------~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~   82 (160)
T d2d4za3          10 NIQVGDIMVRD-------VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFE   82 (160)
T ss_dssp             SCBTTSSSBSS-------CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCC
T ss_pred             ceEHHHhcCCC-------CeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchh
Confidence            68999999998       999999999999999999999999999943345789999999999887653210        


Q ss_pred             ----------------CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHH
Q 028491          128 ----------------SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVV  189 (208)
Q Consensus       128 ----------------~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~  189 (208)
                                      ......+.++|.+  +++++++++++.+|+++|.+++++++||++++ ++|+||++||++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          83 EMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             SCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             hccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHHHhC
Confidence                            1123345667887  89999999999999999999999999999988 999999999999875

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.4e-21  Score=140.83  Aligned_cols=138  Identities=16%  Similarity=0.259  Sum_probs=110.8

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC----------
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG----------  126 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~----------  126 (208)
                      ..++|+|.+...... -.+.+.+++|+.+|.++|.+++++.+||+.++++++++|+||.+||+.++....          
T Consensus         3 ~~a~DiM~p~~~~~~-~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPL-LTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCC-CCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCc-eEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            467899987633210 034567899999999999999999999996556789999999999998765310          


Q ss_pred             -------------CCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhh
Q 028491          127 -------------RSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       127 -------------~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~  192 (208)
                                   ......+++++|.+  +++++++++++.+++++|.+++.+++||++++ ++|+||++|+++++.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiIt~~Dil~~l~~~~  159 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMA  159 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHHHC
T ss_pred             hhhhcccchhhhhccccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence                         11224568999998  89999999999999999999999999999988 999999999999998866


Q ss_pred             HHHHH
Q 028491          193 KGELK  197 (208)
Q Consensus       193 ~~~~~  197 (208)
                      .++.+
T Consensus       160 ~~~~~  164 (169)
T d2j9la1         160 NQDPD  164 (169)
T ss_dssp             C----
T ss_pred             cCCcc
Confidence            65544

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=5.6e-21  Score=138.16  Aligned_cols=124  Identities=20%  Similarity=0.328  Sum_probs=106.5

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc-----------
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ-----------  125 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~-----------  125 (208)
                      ..+.++|.++       ++++.+++|+.+|++.|.+++++.+||+  |++++++|+||.+||++.+...           
T Consensus         4 ~~v~~~m~~~-------p~~v~~~~~v~~a~~~m~~~~~~~ipVv--d~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~   74 (145)
T d1o50a3           4 KDVCKLISLK-------PTVVEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELI   74 (145)
T ss_dssp             HHHTTSSCCC-------CEEECTTCBHHHHHHHHHHSTTCCEEEE--EETTEEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             eEhHHhCCCC-------CEEECCcCcHHHHHHHHHHcCCceEEEe--ccCcceeeeeccchhhhhhhcccccccchhHHH
Confidence            4567788888       9999999999999999999999999999  7889999999999998765432           


Q ss_pred             ---CCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhh
Q 028491          126 ---GRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       126 ---~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~  192 (208)
                         .......+++++|..   ++++.+++++.+|++.|.+++++++||+|++  ++|+||.+|+++++.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~---~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3          75 RSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             --CCCCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             HhhhhhccccCHHHHcCC---CEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcC
Confidence               112234567777764   7789999999999999999999999999765  999999999999998754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.84  E-value=1.2e-20  Score=134.26  Aligned_cols=122  Identities=21%  Similarity=0.295  Sum_probs=103.8

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE  136 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~  136 (208)
                      ++|+++|+++       ++++++++|+.+|++.|.+++++++||+..|++++++|+++..|+++.+.....  ...... 
T Consensus         1 ~~V~dim~~~-------~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~--~~~~~~-   70 (131)
T d2riha1           1 IRTSELLKRP-------PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD--LDGPAM-   70 (131)
T ss_dssp             CBGGGGCCSC-------CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC--TTSBSG-
T ss_pred             CCHHHhccCC-------CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc--cccccc-
Confidence            4789999998       999999999999999999999999999965566899999999998876554432  233344 


Q ss_pred             hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                      .+..  ++.++.+++++.+|++.|.+++++++||+|++  ++|+||..|+++.+..
T Consensus        71 ~~~~--~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          71 PIAN--SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             GGCB--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             cccc--cceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            4444  57899999999999999999999999999866  9999999999987653

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.84  E-value=1.9e-20  Score=132.48  Aligned_cols=107  Identities=19%  Similarity=0.365  Sum_probs=92.1

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCC--CceEEEeechHHHHHHHHhcCCCCCccchhh-hhccCCCeEEEcCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE--QQHIAGIFTERDYLRKIVGQGRSPKYTRVAE-IMTDENKLITLPSD  150 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~--~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~-im~~~~~~~~v~~~  150 (208)
                      ++++++++|+.+|++.|.+++++++||+  |+  +++++|+||.+||+.+.      ....+... +|..  ++++++++
T Consensus         7 pvtv~~~~tv~~a~~~m~~~~~~~~pVv--D~~~~~~lvGivt~~Di~~~~------~~~~~~~~~~~~~--~~~~~~~~   76 (126)
T d1zfja4           7 PFFLTPEHKVSEAEELMQRYRISGVPIV--ETLANRKLVGIITNRDMRFIS------DYNAPISEHMTSE--HLVTAAVG   76 (126)
T ss_dssp             CCCBCSSSBHHHHHHHHHHTTCSEEEEE--SCTTTCBEEEEEEHHHHHHCS------CSSSBTTTSCCCS--CCCCEETT
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcEEEE--eeccCCeEEEEeEHHHHHHhh------ccCCceeeeeecc--ceeecCCC
Confidence            8899999999999999999999999999  54  78999999999986531      12334444 4454  78899999


Q ss_pred             CCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          151 ANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       151 ~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                      +++.+|+++|.+++++++||+|++  ++|+||+.|+++++..
T Consensus        77 ~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          77 TDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            999999999999999999999865  9999999999998753

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.84  E-value=2.3e-20  Score=136.31  Aligned_cols=116  Identities=15%  Similarity=0.275  Sum_probs=101.6

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccC----CCeEEEcC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE----NKLITLPS  149 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~  149 (208)
                      ++++.+++|+.+|++.|.+++++++||+  |++++++|+|+.+||++.+..........++.++|...    +++.++++
T Consensus        14 vv~v~~~~~v~~a~~~m~~~~~~~lpVv--d~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~   91 (153)
T d2ooxe2          14 LATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRA   91 (153)
T ss_dssp             CCCBCTTSBHHHHHHHHHHTTCSEEEEE--CGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECT
T ss_pred             CeEEeCcCcHHHHHHHHHHcCcceEeee--cccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECC
Confidence            8999999999999999999999999999  78899999999999988766554444566788887542    25779999


Q ss_pred             CCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          150 DANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       150 ~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      ++++.++++.|.+++++++||+|++  ++|+||+.|+++++...
T Consensus        92 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          92 TDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             TCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             CCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence            9999999999999999999999865  99999999999998654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=6.7e-21  Score=136.16  Aligned_cols=121  Identities=20%  Similarity=0.373  Sum_probs=105.7

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC--------
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS--------  128 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~--------  128 (208)
                      ++|+++|.++       ++++++++|+.+|++.|.+++++++||+  |+  +++|+++..++++.+......        
T Consensus         1 m~V~~lM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~l~V~--d~--~lvg~~~~~~~~~~~~~~~~~~~~~~~~~   69 (135)
T d3ddja2           1 MNIETLMIKN-------PPILSKEDRLGSAFKKINEGGIGRIIVA--NE--KIEGLLTTRDLLSTVESYCKDSCSQGDLY   69 (135)
T ss_dssp             SSGGGTCEES-------CCEECTTSBHHHHHHHTTGGGCCEEEEE--SS--SEEEEEEHHHHHGGGTTCC---CCHHHHH
T ss_pred             CEeeEEeeCC-------CeEECCCCcHHHHHHHHHHhCCeEEEEE--ec--ceeceeeccchhhhhccccccchhhhhcc
Confidence            4789999998       9999999999999999999999999999  43  699999999988765432211        


Q ss_pred             -CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          129 -PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       129 -~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                       ....+++++|..  ++.++++++++.+|+..|.+++++++||+|++  ++|+||.+|+++++.+
T Consensus        70 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          70 HISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HHHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             ccccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence             135689999998  89999999999999999999999999999865  9999999999998754

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=9.7e-20  Score=130.94  Aligned_cols=114  Identities=17%  Similarity=0.304  Sum_probs=93.7

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhcc----CCCeEEEcC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTD----ENKLITLPS  149 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~----~~~~~~v~~  149 (208)
                      ++++.+++|+.+|++.|.+++++++||+  |++++++|+||..|+++.+...........+.+.+..    ..+++++++
T Consensus        19 v~tv~~~~~v~~a~~~m~~~~~~~ipVv--d~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   96 (140)
T d2nyca1          19 MKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTK   96 (140)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECT
T ss_pred             CEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhcccccEEECC
Confidence            9999999999999999999999999999  7889999999999998877655443333444443321    126889999


Q ss_pred             CCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491          150 DANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV  189 (208)
Q Consensus       150 ~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~  189 (208)
                      ++++.++++.|.+++++++||+|++  ++|+||.+|+++++.
T Consensus        97 ~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          97 NDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            9999999999999999999999865  999999999999874

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.2e-20  Score=138.48  Aligned_cols=132  Identities=12%  Similarity=0.184  Sum_probs=108.4

Q ss_pred             CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCC---
Q 028491           53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSP---  129 (208)
Q Consensus        53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~---  129 (208)
                      .+...+++|+|.+..+     ++++.+++|+.+|++.|.+++++++||++ +++++++|+|+..|++..+.......   
T Consensus         9 ~l~~~t~~Dlm~~~~~-----vv~l~~~~sv~eA~~~l~~~~~~~~pVv~-~~~~~~vG~is~~Dl~~~~~~~~~~~~~~   82 (159)
T d2v8qe2           9 FMKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLWD-SKKQSFVGMLTITDFINILHRYYKSALVQ   82 (159)
T ss_dssp             HHHHSBGGGGSCSEEE-----EEEEETTSBHHHHHHHHHHHTCSEEEEEE-TTTTEEEEEEEHHHHHHHHHHHHHHHTTT
T ss_pred             HhcCCEEEeECCCCCc-----eEEEcCCCcHHHHHHHHHHcCCCceeEEE-CCCCcEEEEEEHHHHHHHHHhccccccch
Confidence            3667899999966533     89999999999999999999999999995 35789999999999987764421100   


Q ss_pred             -----------CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHHHHHhh
Q 028491          130 -----------KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRAVVEQQ  192 (208)
Q Consensus       130 -----------~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~~~~~~  192 (208)
                                 ......++|..  +++++++++++.+|++.|.+++++++||+|+  + ++|+||++||++++....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2          83 IYELEEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             CCCGGGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred             hhhhhhhhcccccceeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHc
Confidence                       01123456766  8999999999999999999999999999973  3 999999999999997654

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.2e-19  Score=131.07  Aligned_cols=127  Identities=16%  Similarity=0.261  Sum_probs=105.7

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA  135 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~  135 (208)
                      ..+++++......+    ++++.+++|+.+|++.|.+++++++||+  |++++++|+||..|++..+..........++.
T Consensus         8 ~~~l~~l~i~~~~~----v~~v~~~~tv~eal~~m~~~~~~~lpVv--d~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~   81 (145)
T d2v8qe1           8 SKSLEELQIGTYAN----IAMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVT   81 (145)
T ss_dssp             GSBHHHHTCSBCSS----CCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHH
T ss_pred             hCCHHHHcCCCCCC----ceEEcCcCcHHHHHHHHHHcCCCccccc--ccCCceEEEEEcchhhhhhhcccccchhhhhh
Confidence            45788886543222    8999999999999999999999999999  88999999999999887665443333445555


Q ss_pred             hh------hccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491          136 EI------MTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE  190 (208)
Q Consensus       136 ~i------m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~  190 (208)
                      +.      |..  +++++.+++++.++++.|.+++++++||+|++  ++|+||.+||++++..
T Consensus        82 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          82 KALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             HHGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             hccchhhhccC--CCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            54      344  78899999999999999999999999999765  9999999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.81  E-value=6.1e-20  Score=137.11  Aligned_cols=134  Identities=19%  Similarity=0.228  Sum_probs=108.7

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC----C
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS----P  129 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~----~  129 (208)
                      +...++.|+|.+..+     ++++++++|+.+|.+.|.+++++++||++ +++++++|+||..|+++.+......    .
T Consensus        17 l~~~~~~dvm~~s~~-----vv~i~~~~~v~~A~~~m~~~~i~~lpVvd-~~~~~~vGiis~~Di~~~l~~~~~~~~~~~   90 (179)
T d2ooxe1          17 IRSRTSYDVLPTSFR-----LIVFDVTLFVKTSLSLLTLNNIVSAPLWD-SEANKFAGLLTMADFVNVIKYYYQSSSFPE   90 (179)
T ss_dssp             HHHSBHHHHSCSEEE-----EEEEETTSBHHHHHHHHHHHTCSCEEEEE-TTTTEEEEEECHHHHHHHHHHHHHHCSCGG
T ss_pred             HcCCEeeeeCCCCCc-----EEEEECcchHHHHHHHHHHcCCCeEEEEe-CCCCeeEEEEeechHHHHHHhccccccchh
Confidence            567889999986533     89999999999999999999999999994 2568999999999998876532100    0


Q ss_pred             --------------CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC------c-eeEEEEHHHHHHHH
Q 028491          130 --------------KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG------R-IVGMISIVDVVRAV  188 (208)
Q Consensus       130 --------------~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~------~-~vGiit~~dll~~~  188 (208)
                                    ........|..  +++++++++++.+|+..|.+++++++||+|+      + ++|+||++||++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l  168 (179)
T d2ooxe1          91 AIAEIDKFRLLGLREVERKIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI  168 (179)
T ss_dssp             GGGGGGGSBHHHHHHHHHHTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHH
T ss_pred             hhhhhhccchhhhcccceeeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHH
Confidence                          01112334666  8999999999999999999999999999972      2 99999999999999


Q ss_pred             HHhhHHH
Q 028491          189 VEQQKGE  195 (208)
Q Consensus       189 ~~~~~~~  195 (208)
                      ..+..+.
T Consensus       169 ~~~~~~~  175 (179)
T d2ooxe1         169 SMNCKET  175 (179)
T ss_dssp             HTTCGGG
T ss_pred             HHhhhHh
Confidence            8876643

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.79  E-value=3.2e-21  Score=135.40  Aligned_cols=111  Identities=19%  Similarity=0.328  Sum_probs=58.8

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecC-CCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPG-EQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN  152 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d-~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  152 (208)
                      ++++++++|+.+|+++|.+++++++||++++ .+++++|+||.+|+... ...   ....++..+|...++++++.++++
T Consensus         6 pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~-~~~---~~~~~~~~~~~~~~~~~~v~~~~~   81 (120)
T d1jr1a4           6 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFL-KEE---EHDRFLEEIMTKREDLVVAPAGIT   81 (120)
T ss_dssp             TCC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETTCC
T ss_pred             CEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeeh-hcc---ccCceeEEEEeeccCceEECCCCC
Confidence            7899999999999999999999999999311 26799999999997532 222   234567777665557899999999


Q ss_pred             HHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHH
Q 028491          153 ILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAV  188 (208)
Q Consensus       153 l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~  188 (208)
                      +.+|+++|.+++++++||+|++  ++|+||++|+++..
T Consensus        82 ~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          82 LKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             HHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence            9999999999999999999875  99999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=1.4e-10  Score=80.85  Aligned_cols=60  Identities=20%  Similarity=0.323  Sum_probs=55.6

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ...+++++|.++       +.++++++++.+|++.|.++++.++||+  |++|+++|+||..||++.+.
T Consensus        63 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lPVV--D~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          63 DDTLIADILNER-------VISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             TTSBHHHHSBSC-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             ccEEhhhhccCC-------CccCCCCCCHHHHHHHHHHhCCEEEEEE--eCCCEEEEEEEHHHHHHHHH
Confidence            357899999998       8999999999999999999999999999  88999999999999998653

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.99  E-value=2.4e-10  Score=78.86  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhh
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQKGELKRLNEFIR  204 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~  204 (208)
                      .|+++|++  ++.++++++++.+|++.|.+++.+.+||++++ ++|+||..|+++.+..........+++++.
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~   71 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVME   71 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCB
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeeccccccccccccceeEeeecc
Confidence            47899998  89999999999999999999999999999988 999999999999988765444445555554

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=2.1e-10  Score=80.40  Aligned_cols=72  Identities=19%  Similarity=0.308  Sum_probs=59.9

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhh
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIR  204 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~  204 (208)
                      ..||+++|++  ++.++++++++.+|++.|.+++++.+||+|++  ++|+||..|+++.+..........+++++.
T Consensus         4 ~~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~   77 (132)
T d2yzia1           4 KAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMT   77 (132)
T ss_dssp             TSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCB
T ss_pred             CCcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeeccc
Confidence            5689999998  89999999999999999999999999999876  999999999998876543322234444443

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=1.6e-09  Score=76.94  Aligned_cols=60  Identities=28%  Similarity=0.385  Sum_probs=55.0

Q ss_pred             ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ....+.++|.++       ++++.+++++.+|++.|.++++.++||+  |++|+++|+||..||++.+.
T Consensus        63 ~~~~v~~im~~~-------~~~v~~~~~~~~a~~~m~~~~~~~lPVV--d~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          63 PRTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             TTCBSTTTSBSS-------CCCEESSCCHHHHHHHHHHSCCSEEEEE--CSSCBEEEEEEHHHHHHHHH
T ss_pred             cccchHHhcccC-------CccCCCCChHHHHHHHHHHcCCCEEEEE--eECCEEEEEEEHHHHHHHHH
Confidence            356788999988       9999999999999999999999999999  88899999999999998654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.85  E-value=2.3e-09  Score=74.38  Aligned_cols=58  Identities=28%  Similarity=0.432  Sum_probs=54.3

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI  122 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~  122 (208)
                      ..+++++|.++       +.++++++++.+|++.|.+++++++||+  |++|+++|+||..||++++
T Consensus        66 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          66 ETKAEEFMTAS-------LITIREDSPITGALALMRQFNIRHLPVV--DDKGNLKGIISIRDITRAI  123 (127)
T ss_dssp             TCBGGGTSEEC-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHH
T ss_pred             cchhhhhhhhh-------ccccccccchhHHHHHHHHcCceEEEEE--eCCCeEEEEEEHHHHHHHH
Confidence            46789999988       9999999999999999999999999999  8899999999999999875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.85  E-value=1.8e-09  Score=75.49  Aligned_cols=60  Identities=20%  Similarity=0.409  Sum_probs=54.7

Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~  191 (208)
                      .+|+++|.+..++.++++++++.+|++.|.+++++++||+|++  ++|++|..|+++.+...
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~   63 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL   63 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcc
Confidence            5789999765589999999999999999999999999999875  99999999999998653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.84  E-value=7.5e-10  Score=79.49  Aligned_cols=60  Identities=25%  Similarity=0.385  Sum_probs=54.8

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI  122 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~  122 (208)
                      ....+++++|+++       +.++.+++|+.++++.|.++++.++||+  |++|+++|+||.+||++++
T Consensus        96 ~~~~~v~~~m~~~-------~~tv~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          96 LPNKPVAEIMTRD-------VIVATPHMTVHEVALKMAKYSIEQLPVI--RGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             -CCCBGGGTCBSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--ETTTEEEEEEEHHHHGGGG
T ss_pred             ccCCEeehhcccC-------ceEECcccccHHHHHHHHHcCeeEEEEE--eCCCEEEEEEEHHHHHHHh
Confidence            4567899999998       9999999999999999999999999999  7889999999999998753

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.84  E-value=3e-09  Score=74.93  Aligned_cols=61  Identities=31%  Similarity=0.444  Sum_probs=56.1

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ....+++++|.++       ++++.+++++.++++.|.++++.++||+  |++|+++|+||..||++++.
T Consensus        70 ~~~~~v~~im~~~-------~~~v~~~~~~~~~~~~m~~~~~~~l~Vv--d~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          70 FYGKVVKDVMVTN-------LVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             HHTCBHHHHSBCC-------CCBCCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             ccCCCHHHHhCcc-------cccccccchhhHHHHHHHHcCCCEEEEE--ccCCEEEEEEEHHHHHHHHH
Confidence            3467899999998       9999999999999999999999999999  88999999999999998754

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=2.1e-09  Score=74.20  Aligned_cols=63  Identities=21%  Similarity=0.304  Sum_probs=51.9

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ  125 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~  125 (208)
                      .....++++|.++       ++++++++++.+|++.|.++++.++||+  |++|+++|+||..|++++++.+
T Consensus        57 ~~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          57 PDEEQLAMLVKRD-------VPVVKENDTLKKAAKLMLEYDYRRVVVV--DSKGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             -------CCCBSC-------CCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTT
T ss_pred             hcccchhhccccc-------eeecchhhHHHHHHHHHHHcCcEEEEEE--eCCCEEEEEEEHHHHHHHHHhH
Confidence            3356788999988       9999999999999999999999999999  8999999999999999875543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.81  E-value=3.9e-09  Score=73.26  Aligned_cols=60  Identities=17%  Similarity=0.348  Sum_probs=54.7

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ....+++++|+++       +.++.+++++.+|.+.|.+++++++||+  | +|+++|+||..|++++++
T Consensus        67 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          67 VKDTQVKEIMTRQ-------VAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             GGGSBGGGTSBCS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             ccceeEeeeccce-------eEEeccCccHHHHHHHHHHCCCcEEEEE--E-CCEEEEEEEHHHHHHHHh
Confidence            4467899999998       9999999999999999999999999999  4 589999999999998764

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.81  E-value=1.4e-09  Score=76.24  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=55.0

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      +...+++++|+.+       +.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.
T Consensus        71 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~i~~lpVv--d~~g~lvGiit~~Dil~~  129 (135)
T d3ddja2          71 ISTTPIIDYMTPN-------PVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLL  129 (135)
T ss_dssp             HHTSBGGGTSEES-------CCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGG
T ss_pred             cccCCHHHHhCCc-------cceEEeccccchhhhhhhhcceeEEEEE--eCCCEEEEEEEHHHHHHH
Confidence            4467899999998       9999999999999999999999999999  899999999999998874

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=2.1e-09  Score=74.23  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=57.3

Q ss_pred             cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhH-HHHHHHHHhhhc
Q 028491          132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQK-GELKRLNEFIRG  205 (208)
Q Consensus       132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~-~~~~~~~~~~~~  205 (208)
                      ++++++|++  +++++++++++.+|++.|.+++++.+||+|++  ++|+||..|+++....... ......++++..
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~   75 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD   75 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeec
Confidence            468999998  89999999999999999999999999999765  9999999999876544322 222234455543

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.79  E-value=8.2e-09  Score=72.67  Aligned_cols=60  Identities=22%  Similarity=0.379  Sum_probs=54.2

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ....+++++|+++       ++++++++++.+|++.|.+++++++||+  | +|+++|+||..||++++.
T Consensus        72 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          72 AFETPLFEVMHTD-------VTSVAPQAGLKESAIYMQKHKIGCLPVV--A-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             -CCCBHHHHSCSC-------EEEBCTTSBHHHHHHHHHHTTCSCEEEE--E-TTEEEEEECHHHHHHHHH
T ss_pred             ccccchhHhhccc-------cccccccchHHHHHHHHHHcCceEEEEE--E-CCEEEEEEEHHHHHHHHH
Confidence            4467899999998       9999999999999999999999999999  4 589999999999998764

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=6.8e-09  Score=71.37  Aligned_cols=60  Identities=18%  Similarity=0.280  Sum_probs=55.6

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ..++.++|..+       +.++++++++.++++.|.+++..++||+  |++|+++|+||..|+++++..
T Consensus        59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVv--de~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          59 DSSVFNKVSLP-------DFFVHEEDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             TSBSGGGCBCT-------TCCEETTSBHHHHHHHHHHCCCSEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             cccccccccCc-------cEEECCCCCHHHHHHHHHhcCceeeeeE--CCCCeEEEEEEHHHHHHHHHH
Confidence            56889999988       8999999999999999999999999999  899999999999999988654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.77  E-value=3.1e-09  Score=75.25  Aligned_cols=59  Identities=19%  Similarity=0.282  Sum_probs=54.5

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ....+++++|.++       ++++++++++.+|.+.|.+++..++||+  |++|+++|+||..||++.
T Consensus        66 ~~~~~v~~im~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          66 PDEVPIRLVMRKP-------IPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             GGGSBGGGTSBSS-------CCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTT
T ss_pred             ccccccccccccc-------cccccchhhHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHHH
Confidence            4467899999988       9999999999999999999999999999  889999999999998874

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.68  E-value=3e-08  Score=69.94  Aligned_cols=63  Identities=22%  Similarity=0.305  Sum_probs=55.2

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG  126 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~  126 (208)
                      +...+++++|..        ++++.+++++.+|++.|.++++.++||+  |++|+++|+||..||++++..+.
T Consensus        81 ~~~~~~~~~~~~--------~~~i~~~~~l~~a~~~m~~~~i~~lpVV--d~~g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3          81 LIAKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVV--DEKGEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             CSSCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             ccccCHHHHcCC--------CEEEcCCCCHHHHHHHHHHcCceEEEEE--eCCCeEEEEEEHHHHHHHHHhcC
Confidence            445678888864        5789999999999999999999999999  88999999999999999876553

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=1.9e-08  Score=71.09  Aligned_cols=51  Identities=27%  Similarity=0.473  Sum_probs=47.7

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG  126 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~  126 (208)
                      ++++.+++++.++++.|.++++.++||+  |++|+++|+||..||+++++..+
T Consensus        94 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~l~GiVt~~dii~~lv~~~  144 (145)
T d2v8qe1          94 VLKCYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVLTG  144 (145)
T ss_dssp             CCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             CeEECCCCcHHHHHHHHHHcCceEEEEE--ccCCEEEEEEEHHHHHHHHHhcC
Confidence            8899999999999999999999999999  89999999999999999887544

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.64  E-value=5e-08  Score=69.65  Aligned_cols=61  Identities=15%  Similarity=0.340  Sum_probs=55.6

Q ss_pred             CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHHHHHHh
Q 028491          129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~~~~~~  191 (208)
                      ..+.+|+++|++  +++++++++++.+|+++|.+++++.+||+|+   + ++|+++..|+++++...
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~   72 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   72 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhc
Confidence            346799999998  8999999999999999999999999999984   3 99999999999998764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.62  E-value=1e-08  Score=70.45  Aligned_cols=58  Identities=16%  Similarity=0.316  Sum_probs=43.9

Q ss_pred             ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491           57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK  121 (208)
Q Consensus        57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~  121 (208)
                      ..+..+|....+     ++++.+++++.+|.++|.+++++++||+  |++|+++|+||..||+++
T Consensus        61 ~~~~~~~~~~~~-----~~~v~~~~~~~~a~~~m~~~~i~~lpVV--d~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          61 RFLEEIMTKRED-----LVVAPAGITLKEANEILQRSKKGKLPIV--NENDELVAIIARTDLKKN  118 (120)
T ss_dssp             -----CCSBTTT-----SCCEETTCCHHHHHHHTCSCC---CEEE--ETTTEEEEEECHHHHHHH
T ss_pred             ceeEEEEeeccC-----ceEECCCCCHHHHHHHHHHcCccEEEEE--cCCCEEEEEEEHHHhhhc
Confidence            455566554422     7899999999999999999999999999  789999999999999875

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4e-08  Score=71.21  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ  125 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~  125 (208)
                      .....++++|.+.       +.++.+++++.+++++|.+++..++||+   ++|+++|+||..||++++...
T Consensus        97 ~~~~~v~~im~~~-------~~tv~~~~~l~~v~~~~~~~~~~~l~V~---d~g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1          97 PPTLKLRNILDLS-------PFTVTDLTPMEIVVDIFRKLGLRQCLVT---HNGRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             CCCEECGGGEESS-------CCEEETTSBHHHHHHHHHHHTCSEEEEE---ETTEEEEEEEHHHHHHHHHHH
T ss_pred             ccccchhhhccCC-------CEEECCCCcHHHHHHHHHhcCceEEEEE---ECCEEEEEEEHHHHHHHHHHH
Confidence            4467799999998       9999999999999999999999999999   468999999999999887554

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.58  E-value=3.8e-08  Score=67.99  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=45.2

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV  123 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~  123 (208)
                      ++++.+++++.+|.+.|.+++++++||+  |++|+++|+||..||++++.
T Consensus        70 ~~~~~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          70 LVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             CCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             eeecCCCCCHHHHHHHHHhcCCcEEEEE--cCCCeEEEEEEHHHHHHHhh
Confidence            7899999999999999999999999999  89999999999999998643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.57  E-value=1.5e-07  Score=67.03  Aligned_cols=67  Identities=22%  Similarity=0.429  Sum_probs=55.4

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ  125 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~  125 (208)
                      ..++.++|..... ...+++++++++++.++++.|.+++..++||+  |++|+++|+||..|++++++..
T Consensus        69 ~~~v~~~~~~~~~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          69 DLSVGEALLKRPA-NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             GSBHHHHHHTSCC-CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEE--CTTCBEEEEEEHHHHHHHHHSC
T ss_pred             ccchhhheeeeec-ccCCCeEECCCCcHHHHHHhhhhceeeEEEEE--cCCCEEEEEEEHHHHHHHHHcC
Confidence            4578888865411 11237789999999999999999999999999  8899999999999999987654

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.57  E-value=7.7e-08  Score=66.63  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=51.9

Q ss_pred             chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec--C-c-eeEEEEHHHHHHHHHHh
Q 028491          133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--G-R-IVGMISIVDVVRAVVEQ  191 (208)
Q Consensus       133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd--~-~-~vGiit~~dll~~~~~~  191 (208)
                      +|+++|++  +++++++++++.+|++.|.+++++++||++  + + ++|+++..|+++.+...
T Consensus         2 ~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~   62 (131)
T d2riha1           2 RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR   62 (131)
T ss_dssp             BGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT
T ss_pred             CHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc
Confidence            68999998  899999999999999999999999999994  3 3 99999999999988654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=5.8e-08  Score=68.17  Aligned_cols=49  Identities=18%  Similarity=0.403  Sum_probs=45.4

Q ss_pred             eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491           74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG  124 (208)
Q Consensus        74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~  124 (208)
                      ++++++++++.++++.|.+++..++||+  |++|+++|+||..|++++++.
T Consensus        91 ~~~v~~~~~l~~~~~~~~~~~~~~l~VV--d~~~~l~GiIt~~Dii~~l~~  139 (140)
T d2nyca1          91 VYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYILL  139 (140)
T ss_dssp             -CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             cEEECCCCcHHHHHHHHHhcCeeEEEEE--eCCCeEEEEEEHHHHHHHHhc
Confidence            7889999999999999999999999999  899999999999999998753

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.1e-07  Score=67.90  Aligned_cols=63  Identities=21%  Similarity=0.419  Sum_probs=54.6

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHHHHHhhH
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRAVVEQQK  193 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~~~~~~~  193 (208)
                      ..++.|+|....++++++.++++.+|++.|.+++++.+||+|+  + ++|+|+..|+++.+.....
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~   77 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK   77 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence            4678999965447899999999999999999999999999974  3 9999999999999876433

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.49  E-value=9.3e-08  Score=69.70  Aligned_cols=60  Identities=17%  Similarity=0.328  Sum_probs=53.3

Q ss_pred             ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHHHHH
Q 028491          131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRAVVE  190 (208)
Q Consensus       131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~~~~  190 (208)
                      ...+.|+|....++++++++.++.+|+..|.+++++++||+|+  + ++|+||..|+++.+..
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            4579999975337999999999999999999999999999984  3 9999999999998864

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=92.83  E-value=0.00051  Score=50.54  Aligned_cols=117  Identities=11%  Similarity=0.016  Sum_probs=83.1

Q ss_pred             cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCc-------EE------EEEecCCCceEEEeechHHHHH
Q 028491           54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIG-------SL------VVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~-------~~------pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      +.....+.+|...       ........+...+.+.+......       .+      ++.  +..+++.|+.+..++..
T Consensus        62 ~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~--~i~~~l~~f~dl~~l~~  132 (213)
T d1lkvx_          62 IERNLEKKISGFV-------SRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELAD--EIRRRMFVFEDILKLDD  132 (213)
T ss_dssp             HHHHHHHHHHHHH-------HHHHSSCCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHH--HHHHHHCCGGGGGGSCH
T ss_pred             HHHHHHhcccccc-------chhhhcchHHHHHHHHHHhcccccchhheeeeeecChhhhh--hHhhhccccccHHHHcc
Confidence            3344556677666       55566666777777666542211       00      112  23467788888777655


Q ss_pred             HHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHH
Q 028491          121 KIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAV  188 (208)
Q Consensus       121 ~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~  188 (208)
                      .       .....+++++..  .+.++..+++...+.++|...+...+||++++  .+|.|+..|+..+.
T Consensus       133 ~-------~~~~~l~~i~~~--~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~  193 (213)
T d1lkvx_         133 R-------SIQLVLREVDTR--DLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQ  193 (213)
T ss_dssp             H-------HHHHHHTTSCHH--HHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             c-------cHhHHHHHhhhh--hheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHHH
Confidence            4       235667888877  78889999999999999999999999999887  99999999996653

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=89.63  E-value=0.00092  Score=49.08  Aligned_cols=56  Identities=13%  Similarity=0.046  Sum_probs=48.9

Q ss_pred             cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491           56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR  120 (208)
Q Consensus        56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~  120 (208)
                      ...+++++...       +.++..+++-.++.++|...+....||+  +++++.+|.|+..|+..
T Consensus       136 ~~~l~~i~~~~-------~~~a~~~~~~e~~~~~l~~~~~~~~~vv--~~e~~~~G~I~~~Die~  191 (213)
T d1lkvx_         136 QLVLREVDTRD-------LALALKGASDELKEKIFKNMSKRAAALL--KDELEYMGPVRLKDVEE  191 (213)
T ss_dssp             HHHHTTSCHHH-------HHHHHTTCCHHHHHHHHTTSCHHHHHHH--HHHHHSCCCCCHHHHHH
T ss_pred             hHHHHHhhhhh-------heeehhcCCHHHHHHHHHhCCHHHHHHH--HHhhhhcCCCcHHHHHH
Confidence            45567777777       8889999999999999999999999999  78999999999999644