Citrus Sinensis ID: 028549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccEEEcccc
Coil and Loop (DISEMBL)
maeeepkkletetptepppppstepaapaaaeppkdvaddktvipsppaedkpeeskalavvdkapeaeppagekstegsvnrDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Flexible Loop (DISEMBL)
maeeepkkletetptepppppSTEPAAPAAAEPPKDVADDKTVIpsppaedkpeesKALAVVDKAPeaeppagekstegsvnrdavLARVETEKRISLIraweeseksqaennrahkklssivswenSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAkyratgsapkkllscfgs
Low Complexity Region (SEG)
MaeeepkkletetptepppppstepaapaaaeppkDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVeaelkkieeqlekkkaeYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Disordered region (IsUnstruct)
***********************************************************************************************ISLI************************************************************************************************************
Disordered Region (DISOPRED)
*************************************************************************************************L**AWEESEKSQAENNRAHKKLSSIVSWE******************************************************************ATGSAPKKLLSCFGS
Disordered Region (DISEMBL)
*************************************ADDKTVIPS*************AVVDK****************VNRDAVLARVETEKRISLIRAWE***************LSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Disordered Region (DISPRO)
***************************************************************KA***************VNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.922	0.964	0.679	1e-60
Q9M2D8	212	Uncharacterized protein A	no	no	0.801	0.783	0.643	4e-49
O80837	190	Remorin OS=Arabidopsis th	no	no	0.913	0.994	0.577	3e-44

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 171/212 (80%), Gaps = 21/212 (9%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENN 113
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AEN 
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAEN- 106

Query: 114 RAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMI 173
           +A KK+S+I +WENS+KA +EAELKK+EEQLEKKKAEY EKMKNK+AL+HKEAEEKRAMI
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMI 166

Query: 174 EAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           EAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct: 167 EAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score =  194 bits (493), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 133/171 (77%), Gaps = 5/171 (2%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EK
Sbjct: 47  KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEK 102

Query: 95  RISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEK 154
           R+S +RAWEESEKS+AEN +A KK++ + +WENS+KAAVEA+LKKIEEQLEKKKAEY E+
Sbjct: 103 RLSFVRAWEESEKSKAEN-KAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAER 161

Query: 155 MKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           MKNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct: 162 MKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

Arabidopsis thaliana (taxid: 3702)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 149/206 (72%), Gaps = 17/206 (8%)

Query: 1   MAEEE-PKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKAL 59
           MAEE+   K++ E+P    P     PA       P +VAD+K  I +PP    P ESKAL
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPA-------PVEVADEK--IHNPP----PVESKAL 47

Query: 60  AVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKL 119
           AVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN RA KK+
Sbjct: 48  AVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAEN-RAQKKI 104

Query: 120 SSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGE 179
           S + +WENS+KAAVEA+L+KIEE+LEKKKA+Y EKMKNK+A IHK AEEKRAM+EAK+GE
Sbjct: 105 SDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGE 164

Query: 180 DLLKAEELAAKYRATGSAPKKLLSCF 205
           +LLKAEE+ AKYRATG  PK    CF
Sbjct: 165 ELLKAEEMGAKYRATGVVPKATCGCF 190

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
432278309	199	remorin [Morus indica]	0.956	0.994	0.728	2e-70
255539463	182	Remorin, putative [Ricinus communis] gi|	0.821	0.934	0.785	4e-62
449517457	189	PREDICTED: remorin-like [Cucumis sativus	0.811	0.888	0.728	6e-62
255541538	188	Remorin, putative [Ricinus communis] gi|	0.908	1.0	0.634	5e-61
224136994	201	predicted protein [Populus trichocarpa]	0.797	0.820	0.736	4e-60
34925093	198	RecName: Full=Remorin; AltName: Full=pp3	0.922	0.964	0.679	7e-59
351724129	194	uncharacterized protein LOC100305501 [Gl	0.913	0.974	0.633	2e-57
225470169	196	PREDICTED: remorin [Vitis vinifera] gi|1	0.806	0.852	0.728	5e-57
42573455	201	Remorin family protein [Arabidopsis thal	0.951	0.980	0.669	5e-57
449461293	157	PREDICTED: remorin-like [Cucumis sativus	0.714	0.942	0.756	7e-57

>gi|432278309|gb|AGB07445.1| remorin [Morus indica]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/206 (72%), Positives = 173/206 (83%), Gaps = 8/206 (3%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           MAEE+P K+E E P+  PP   TE     A EPPKDV ++K+VIP PP EDKP+ESKALA
Sbjct: 1   MAEEQPIKVEPEAPSSEPP---TEAKVKPAEEPPKDVTEEKSVIPHPPPEDKPDESKALA 57

Query: 61  VVDKAPEAEPPAGEKST-EGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKL 119
           VVD  PE   PA EKS+ EGS+NRDAVLARV TEKR+SLIRAWEESEKS+AEN +AHK +
Sbjct: 58  VVDMEPE---PAAEKSSSEGSINRDAVLARVATEKRLSLIRAWEESEKSKAEN-KAHKNV 113

Query: 120 SSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGE 179
           SSI +WENS+KA+VEA+LKK EE LEKKKAEYVEKMKNK+ALIHKEAEE++A+IEAKRGE
Sbjct: 114 SSIGAWENSKKASVEAQLKKFEENLEKKKAEYVEKMKNKIALIHKEAEERKAIIEAKRGE 173

Query: 180 DLLKAEELAAKYRATGSAPKKLLSCF 205
           +LLKAEE AAKYRATG+ PKKLL CF
Sbjct: 174 ELLKAEESAAKYRATGTGPKKLLGCF 199

Source: Morus indica

Species: Morus indica

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539463|ref|XP_002510796.1| Remorin, putative [Ricinus communis] gi|223549911|gb|EEF51398.1| Remorin, putative [Ricinus communis]

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/177 (78%), Positives = 158/177 (89%), Gaps = 7/177 (3%)

Query: 29  AAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLA 88
           A +EPPKDVA++K+ IP PP E   ++SKAL  V+K+ E      EKSTEGSVNRDAVLA
Sbjct: 13  APSEPPKDVAEEKSAIPPPPQEKASDDSKALVAVEKSVE------EKSTEGSVNRDAVLA 66

Query: 89  RVETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKK 148
           RVETEKR+SLIRAWEESEKS+AEN +AHKKLS+IVSWENS+KA+VEAELK++EE+LEKKK
Sbjct: 67  RVETEKRVSLIRAWEESEKSKAEN-KAHKKLSAIVSWENSKKASVEAELKQMEEKLEKKK 125

Query: 149 AEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           AEYVEKMKNK+ALIHKEAEEKRAMIEAKRGEDLLKAEE AAKYRATG+APKKLL CF
Sbjct: 126 AEYVEKMKNKIALIHKEAEEKRAMIEAKRGEDLLKAEETAAKYRATGTAPKKLLGCF 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517457|ref|XP_004165762.1| PREDICTED: remorin-like [Cucumis sativus]

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 152/173 (87%), Gaps = 5/173 (2%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDV ++K+VIP PP E K ++SKAL +V+K PE   P   K+TEGSVNRDAVLA+V TEK
Sbjct: 22  KDVTEEKSVIPPPP-EHKTDDSKALVLVEKVPEVADP---KTTEGSVNRDAVLAKVATEK 77

Query: 95  RISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEK 154
           R+SL++AWEESEKS+AEN +AHKKLSS+ +WENS+KA+VEA+LKKIEE LEKKKA+Y+E+
Sbjct: 78  RLSLVKAWEESEKSKAEN-KAHKKLSSVAAWENSQKASVEADLKKIEESLEKKKAKYIEQ 136

Query: 155 MKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS 207
           MKNK+AL+HK AEEKRA+IEAKRGEDLLKAEE AAKYRATG+APKKLL CF S
Sbjct: 137 MKNKIALLHKSAEEKRAIIEAKRGEDLLKAEETAAKYRATGTAPKKLLGCFSS 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 162/205 (79%), Gaps = 17/205 (8%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           MAE+E KKLE E+P  P P           AE   DVA DK  +P+P  E+KP++SKALA
Sbjct: 1   MAEQEAKKLEAESPVAPAP-----------AEAKSDVAHDKATVPTP--EEKPDDSKALA 47

Query: 61  VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLS 120
           VV+K PE+ P   +K++ GS++RD  LA VE EKR S I+AWE+SEKS+AEN +A KKLS
Sbjct: 48  VVEKVPESGP---KKTSGGSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAEN-KAQKKLS 103

Query: 121 SIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGED 180
           S+ +WENS+KAA+EA+L+KIEEQLEKKKAEY EKMKNK+AL+HK+AEEKRAM+EA+RGE+
Sbjct: 104 SVTAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVHKQAEEKRAMVEAQRGEE 163

Query: 181 LLKAEELAAKYRATGSAPKKLLSCF 205
           +LKAEE+AAKYRATG  PKKLL CF
Sbjct: 164 VLKAEEMAAKYRATGQTPKKLLGCF 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136994|ref|XP_002322467.1| predicted protein [Populus trichocarpa] gi|222869463|gb|EEF06594.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 148/171 (86%), Gaps = 6/171 (3%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++KTVIP   AE+K EES+A+AV++ +  AE        EGSVNRDAVLARV TEK
Sbjct: 37  KDVAEEKTVIPPSVAEEKVEESEAVAVIETSESAEEK-----KEGSVNRDAVLARVATEK 91

Query: 95  RISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEK 154
           RISL++AWEESEKS+AEN +AHKKLSSI SWENS+KA+VEAEL KIEEQLEKKKAE +EK
Sbjct: 92  RISLVKAWEESEKSKAEN-KAHKKLSSIASWENSKKASVEAELMKIEEQLEKKKAECMEK 150

Query: 155 MKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           MKNK+A+IHKEAEEK+A++EAKRGEDLLKAEE+A KYRATGS+PKKLL  F
Sbjct: 151 MKNKIAMIHKEAEEKKAIVEAKRGEDLLKAEEMAGKYRATGSSPKKLLGIF 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34925093|sp|P93788.1|REMO_SOLTU RecName: Full=Remorin; AltName: Full=pp34 gi|1881585|gb|AAB49425.1| remorin [Solanum tuberosum]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 171/212 (80%), Gaps = 21/212 (9%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENN 113
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AEN 
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAEN- 106

Query: 114 RAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMI 173
           +A KK+S+I +WENS+KA +EAELKK+EEQLEKKKAEY EKMKNK+AL+HKEAEEKRAMI
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMI 166

Query: 174 EAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           EAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct: 167 EAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724129|ref|NP_001236279.1| uncharacterized protein LOC100305501 [Glycine max] gi|255625713|gb|ACU13201.1| unknown [Glycine max]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/210 (63%), Positives = 161/210 (76%), Gaps = 21/210 (10%)

Query: 1   MAEEEPKKL-ETET-PTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSP---PAEDKPEE 55
           M EE+ KK+ ETE+ P+ P P P           P +DVA++K+VIP P   PA+    E
Sbjct: 1   MTEEQSKKVAETESFPSNPAPEP--------VVVPKEDVAEEKSVIPQPSPSPAD----E 48

Query: 56  SKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRA 115
           SKAL +V+K  E    A EK  EGSVNRDAVLARV TEKR+SLI+AWEESEKS+A +N++
Sbjct: 49  SKALVIVEKTSEV---AEEKPIEGSVNRDAVLARVATEKRLSLIKAWEESEKSKA-DNKS 104

Query: 116 HKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEA 175
           HKKLS+I +WENS+KAA EAEL+KIEEQLEKKKAEY EK+KNK+A IH+EAEEKRA IEA
Sbjct: 105 HKKLSAISAWENSKKAAAEAELRKIEEQLEKKKAEYGEKLKNKIATIHREAEEKRAFIEA 164

Query: 176 KRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           ++GE+ LKAEE AAKYRATG+AP KL  CF
Sbjct: 165 QKGEEFLKAEETAAKYRATGTAPTKLFGCF 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470169|ref|XP_002267609.1| PREDICTED: remorin [Vitis vinifera] gi|147840877|emb|CAN73187.1| hypothetical protein VITISV_041529 [Vitis vinifera] gi|302143892|emb|CBI22753.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 147/173 (84%), Gaps = 6/173 (3%)

Query: 35  KDVADDKTVIPSPPAEDKPEE-SKALAVVDKAPEAEPPAGEKSTEG-SVNRDAVLARVET 92
           KDV ++K VIP  P  ++  + +KALA+V+K PE   P  EK +EG SVNRD VLARV T
Sbjct: 28  KDVTEEKAVIPPAPPPEEKPDETKALAIVEKVPE---PIEEKGSEGGSVNRDTVLARVAT 84

Query: 93  EKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYV 152
           EKR+SLIRAWEESEK +AEN +A KKLS+  +WENS+KA+VEAELKKIEE LE+KKAEYV
Sbjct: 85  EKRLSLIRAWEESEKCKAEN-KAQKKLSATEAWENSQKASVEAELKKIEENLERKKAEYV 143

Query: 153 EKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           EKMKNK+A+IHKEAEEKRAMIEA+RGEDLLKAEE+AAKYRATGSAPKKLL CF
Sbjct: 144 EKMKNKIAIIHKEAEEKRAMIEARRGEDLLKAEEMAAKYRATGSAPKKLLGCF 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573455|ref|NP_974824.1| Remorin family protein [Arabidopsis thaliana] gi|332005825|gb|AED93208.1| Remorin family protein [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 140/209 (66%), Positives = 161/209 (77%), Gaps = 12/209 (5%)

Query: 1   MAEEEPKKLETETPTEPPPPPST---EPAAPAAAEPP-KDVADDKTVIPSPPAEDKPEES 56
           MAEEEPKK+ TET +EP P P     +PAA A   P  K VA    +    PAE+K E+S
Sbjct: 1   MAEEEPKKV-TETVSEPTPTPEVPVEKPAAAADVAPQEKPVAPPPVLPSPAPAEEKQEDS 59

Query: 57  KALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAH 116
           KA+  V       P   E+  EGSVNRDAVLARVETEKR+SLI+AWEE+EK + EN +A 
Sbjct: 60  KAIVPVV------PKVEEEKKEGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVEN-KAE 112

Query: 117 KKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAK 176
           KKLSSI SWEN++KAAVEAELKK+EEQLEKKKAEYVE+MKNK+A IHKEAEEKRAMIEAK
Sbjct: 113 KKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAK 172

Query: 177 RGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           RGE++LKAEELAAKYRATG+APKKL  C 
Sbjct: 173 RGEEILKAEELAAKYRATGTAPKKLFGCM 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461293|ref|XP_004148376.1| PREDICTED: remorin-like [Cucumis sativus]

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 136/152 (89%), Gaps = 4/152 (2%)

Query: 56  SKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRA 115
           SKAL +V+K PE   P   K+TEGSVNRDAVLA+V TEKR+SL++AWEESEKS+AEN +A
Sbjct: 10  SKALVLVEKVPEVADP---KTTEGSVNRDAVLAKVATEKRLSLVKAWEESEKSKAEN-KA 65

Query: 116 HKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEA 175
           HKKLSS+ +WENS+KA+VEA+LKKIEE LEKKKA+Y+E+MKNK+AL+HK AEEKRA+IEA
Sbjct: 66  HKKLSSVAAWENSQKASVEADLKKIEESLEKKKAKYIEQMKNKIALLHKSAEEKRAIIEA 125

Query: 176 KRGEDLLKAEELAAKYRATGSAPKKLLSCFGS 207
           KRGEDLLKAEE AAKYRATG+APKKLL CF S
Sbjct: 126 KRGEDLLKAEETAAKYRATGTAPKKLLGCFSS 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.792	0.828	0.645	4.1e-49
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.748	0.767	0.658	2.3e-46
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.753	0.891	0.580	2.8e-41
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.797	0.778	0.552	7.5e-41
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.777	0.847	0.558	1.6e-40
TAIR|locus:2127058	123	AT4G00670 "AT4G00670" [Arabido	0.541	0.910	0.315	3e-14
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.565	0.240	0.341	1.2e-11
TAIR|locus:2054376	274	AT2G41870 "AT2G41870" [Arabido	0.719	0.543	0.291	6.9e-11
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.594	0.241	0.333	1e-08
TAIR|locus:2103508	296	AT3G57540 "AT3G57540" [Arabido	0.599	0.418	0.289	4.4e-08

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 113/175 (64%), Positives = 136/175 (77%)

Query:    37 VADDKTVI-PS--PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARV 90
             VAD+K ++ P+  PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV
Sbjct:    29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARV 84

Query:    91 ETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXX 150
              TEKR+SLI+AWEESEKS+AEN +A KK+S+I +WENS+KA +                 
Sbjct:    85 ATEKRVSLIKAWEESEKSKAEN-KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAE 143

Query:   151 YVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
             Y EKMKNK+AL+HKEAEEKRAMIEAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct:   144 YTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 108/164 (65%), Positives = 125/164 (76%)

Query:    43 VIPSP-PAEDKPEESKALA-VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             V+PSP PAE+K E+SKA+  VV K  E E    E+  EGSVNRDAVLARVETEKR+SLI+
Sbjct:    45 VLPSPAPAEEKQEDSKAIVPVVPK--EVE----EEKKEGSVNRDAVLARVETEKRMSLIK 98

Query:   101 AWEESEKSQAENNRAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMA 160
             AWEE+EK + EN +A KKLSSI SWEN++KAAV                 YVE+MKNK+A
Sbjct:    99 AWEEAEKCKVEN-KAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIA 157

Query:   161 LIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSC 204
              IHKEAEEKRAMIEAKRGE++LKAEELAAKYRATG+APKKL  C
Sbjct:   158 QIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 94/162 (58%), Positives = 118/162 (72%)

Query:    45 PSPPA-EDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
             PSPP+ E+K ++SKA+ +V  A E   P  +K   GSV+RDAVL R+E +KRISLI+AWE
Sbjct:    19 PSPPSKEEKSDDSKAIVLVVAAKE---PTEDKKV-GSVHRDAVLVRLEQDKRISLIKAWE 74

Query:   104 ESEKSQAENNRAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIH 163
             E+EKS+ EN +A KK+SS+ +WENS+KA+V                 Y E+MKNK+A IH
Sbjct:    75 EAEKSKVEN-KAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIH 133

Query:   164 KEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
             KEAEEKRAM EAKRGED+LKAEE+AAKYRATG+AP KL   F
Sbjct:   134 KEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 94/170 (55%), Positives = 116/170 (68%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             DVA++K  I +PP E   ++SKAL VV+K P  E PA  K    S++RD  LA +  EKR
Sbjct:    48 DVAEEK--IQNPPPEQIFDDSKALTVVEK-P-VEEPAPAKPASASLDRDVKLADLSKEKR 103

Query:    96 ISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKM 155
             +S +RAWEESEKS+AEN +A KK++ + +WENS+KAAV                 Y E+M
Sbjct:   104 LSFVRAWEESEKSKAEN-KAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERM 162

Query:   156 KNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
             KNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct:   163 KNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 95/170 (55%), Positives = 117/170 (68%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+
Sbjct:    30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKK 81

Query:    96 ISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKM 155
              S I+AWEESEKS+AEN RA KK+S + +WENS+KAAV                 Y EKM
Sbjct:    82 TSFIKAWEESEKSKAEN-RAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKM 140

Query:   156 KNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
             KNK+A IHK AEEKRAM+EAK+GE+LLKAEE+ AKYRATG  PK    CF
Sbjct:   141 KNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2127058 AT4G00670 "AT4G00670" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 36/114 (31%), Positives = 65/114 (57%)

Query:    93 EKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYV 152
             +++  +I+AW+E + ++  NN+  KKL  I  WE  +   +                   
Sbjct:    11 DEQSKVIKAWKELKITKV-NNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKS 69

Query:   153 EKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKL-LSCF 205
             EK++N+ A +H +A++K+A ++ +R +++L AEE AA+++A G  PKK  LSCF
Sbjct:    70 EKLRNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 41/120 (34%), Positives = 60/120 (50%)

Query:    88 ARVETEKRISLIRA--WEESEKSQAENNRAHKKLSSIVSWENSRKAAVXXXXXXXXXXXX 145
             A ++T K +S  RA  WEE+EK++    R  ++   I +WEN +KA              
Sbjct:   364 ASLQTSKSVSEARATAWEEAEKAK-HMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVE 422

Query:   146 XXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
                    +++  K+A I ++AEEKRA  EAK+     K E+ A + R TG  P  L SCF
Sbjct:   423 RIKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCF 482

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2054376 AT2G41870 "AT2G41870" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 6.9e-11, P = 6.9e-11
 Identities = 44/151 (29%), Positives = 72/151 (47%)

Query:    51 DKPEESKALAVV-DKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQ 109
             D  EE+  LA+V D+ P +    G  +  G     + + RV+ E+  + I AW+ ++ ++
Sbjct:   118 DHEEETNPLAIVPDQYPGSGLDPGSDNGPGQSRVGSTVQRVKREEVEAKITAWQTAKLAK 177

Query:   110 AENNRAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEK 169
               NNR  ++ + I  W N +                      +EK +N +A   ++AEE+
Sbjct:   178 I-NNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAKAMEKTQNNVAKAQRKAEER 236

Query:   170 RAMIEAKRGEDLLKAEELAAKYRATGSAPKK 200
             RA  EAKRG ++ K  E+A   RA G  P K
Sbjct:   237 RATAEAKRGTEVAKVVEVANLMRALGRPPAK 267

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 43/129 (33%), Positives = 62/129 (48%)

Query:    72 AGEKSTEGSVNR-DAVLA-RVETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSR 129
             A ++  E   N  DA  A ++E EKR +   AWEE+EKS+  N R  ++   I +WE+  
Sbjct:   373 ASKEEEENKKNNGDAEEAQKIEFEKRAT---AWEEAEKSK-HNARYKREEIRIQAWESQE 428

Query:   130 KAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAA 189
             KA +                    K+  K+AL  + +EEKRA+ EA++  D  KA   A 
Sbjct:   429 KAKLEAEMRRIEAKVEQMKAEAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQ 488

Query:   190 KYRATGSAP 198
               R TG  P
Sbjct:   489 YIRETGRIP 497

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2103508 AT3G57540 "AT3G57540" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 37/128 (28%), Positives = 60/128 (46%)

Query:    76 STEGSVNRDAVLARVETEKRISL---IRAWEESEKSQAENNRAHKKLSSIVSWENSRKAA 132
             ++ G  NR    A V+  KR  +   I AW+ ++ ++  NNR  ++ + I  W N +   
Sbjct:   163 ASSGGQNRMVTTASVQRVKREEVEAKITAWQTAKVAKI-NNRFKRQDAVINGWLNEQVHR 221

Query:   133 VXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYR 192
                                +EK +NK+A   ++AEE+RA  E KRG ++ +  E+A   R
Sbjct:   222 ANSWMKKIERKLEDRRAKAMEKTQNKVAKAQRKAEERRATAEGKRGTEVARVLEVANLMR 281

Query:   193 ATGSAPKK 200
             A G  P K
Sbjct:   282 AVGRPPAK 289

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93788	REMO_SOLTU	No assigned EC number	0.6792	0.9227	0.9646	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XV0452 hypothetical protein (202 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	2e-27
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score =  100 bits (251), Expect = 2e-27
 Identities = 64/112 (57%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 90  VETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKA 149
            +  +  S   AWEE+EK++  NN+  ++ + I +WEN +KA  EAELKKIE +LEKKKA
Sbjct: 1   SKKSEAESRADAWEEAEKAKI-NNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKA 59

Query: 150 EYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKL 201
           E  EK+KNK+A  HK+AEEKRA  EAKRGE+  KAEE AAK RATG  P KL
Sbjct: 60  EAAEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKL 111

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 18/82 (21%), Positives = 21/82 (25%), Gaps = 4/82 (4%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
                             P +  PAAPA A P           P  PA      +   A 
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA----APPKPAAAAAAAAAPAAP 99

Query: 62  VDKAPEAEPPAGEKSTEGSVNR 83
              A  A P A     E +  R
Sbjct: 100 PAAAAAAAPAAAAVEDEVTPLR 121

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPA-----AAEPPKDVADDKTVIPSPPAEDKPEES 56
           A        T  P+  P   +     P       A PP               E  P+ +
Sbjct: 373 AAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLT 432

Query: 57  KALAVVDKAPEAEPPAGEKSTEGSVNRD-AVLARVE 91
           +A   VD+ P+  PPA  K  E ++  D  VL ++E
Sbjct: 433 RAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLE 468

Length = 585

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 22/92 (23%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 9   LETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEA 68
            E +T   PP       AA  A +   +        P PPA  KP    A       P  
Sbjct: 116 SEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAA-----AKPPE 170

Query: 69  EPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             PA +         D      ET   +S +R
Sbjct: 171 PAPAAKPPPTPVARAD----PRETRVPMSRMR 198

Length = 418

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	100.0
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	99.26
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	96.71

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=100.00  E-value=7.7e-38  Score=246.18  Aligned_cols=110  Identities=55%  Similarity=0.752  Sum_probs=106.6

Q ss_pred             HHHHHHhHHHHHHHHHhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549           92 TEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRA  171 (207)
Q Consensus        92 ~Ekr~s~a~AWEeaEkaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA  171 (207)
                      .+.+++++++||+++++|+++ ||+|++++|++|||+||++|+++|+++|++||++|++++|||+|+|++||++|+++|+
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~-r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra   80 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINN-RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRA   80 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhhcCCCCCCCc
Q 028549          172 MIEAKRGEDLLKAEELAAKYRATGSAPKKLL  202 (207)
Q Consensus       172 ~aEakr~ee~~Ka~EkA~k~R~TGk~P~~~~  202 (207)
                      +++++|+++++++.++|++||+||++|++||
T Consensus        81 ~aea~r~~~~~k~~ekA~~~R~tG~~P~~~f  111 (111)
T PF03763_consen   81 AAEARRGEEIAKAEEKAAKIRATGKVPSKCF  111 (111)
T ss_pred             HHHHHHhhHHHhHHHHHHHHHhCCCCCcccC
Confidence            9999999999999999999999999998643

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=99.26  E-value=4.2e-12  Score=90.36  Aligned_cols=52  Identities=67%  Similarity=1.069  Sum_probs=44.6

Q ss_pred             CCccccCCCCCCCCCCCCCccccceeeecCC-CCCCCCCCCCCCCCCchhHHHHHHH
Q 028549           35 KDVADDKTVIPSPPAEDKPEESKALAVVDKA-PEAEPPAGEKSTEGSVNRDAVLARV   90 (207)
Q Consensus        35 ~~~~~~~~~~p~p~~~~~~~~sk~l~~v~~~-~~~~~~~~~~~~~gs~~rd~~l~~v   90 (207)
                      +|++++++++|||. +.+.||||||+||++. ++   +..+++++||+|||++|++|
T Consensus         5 ~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~e---pa~eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen    5 KDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPE---PAEEKPSEGSIDRDAALARV   57 (57)
T ss_pred             hhhccccCCCCCCC-CCCCCccceEEEeeccCCC---ccccccCCCcchhhhhhhcC
Confidence            78999999988775 6778999999999985 45   46678889999999999985

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=96.71  E-value=0.045  Score=43.45  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=64.8

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549           90 VETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEK  169 (207)
Q Consensus        90 v~~Ekr~s~a~AWEeaEkaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEek  169 (207)
                      -..++.++.|.+||...++|+.. ..++.+.++.-=-..---+..-.|..+..+.|.+|+.+..+-.+.+..+..+|.-.
T Consensus        22 ~r~~ree~~I~aWEn~qkaKaea-~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~  100 (111)
T PF03763_consen   22 NRYEREEAKIQAWENLQKAKAEA-EMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKI  100 (111)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence            34567799999999999999999 88888877543222222344556677889999999999999999999999999888


Q ss_pred             HHH
Q 028549          170 RAM  172 (207)
Q Consensus       170 RA~  172 (207)
                      |..
T Consensus       101 R~t  103 (111)
T PF03763_consen  101 RAT  103 (111)
T ss_pred             HhC
Confidence            753

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-04

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 45.3 bits (106), Expect = 6e-06
 Identities = 22/129 (17%), Positives = 34/129 (26%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
             E  K+ E E   E     +   A  +    P       T      +  KPEE  +  V
Sbjct: 45  TNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104

Query: 62  VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLSS 121
            +       P  +K TE            +     +      + +  +        K   
Sbjct: 105 AETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIK 164

Query: 122 IVSWENSRK 130
             SWE   K
Sbjct: 165 FNSWEELLK 173

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 5/162 (3%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKT---VIPSPPAEDKPEESKA 58
           A  E     TE  +      + E       E  ++   +K       S  A     E+  
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 59  LAV--VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAH 116
                   A + E  A E   E         +  ETE +       +ES+ +   N    
Sbjct: 85  TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEK 144

Query: 117 KKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNK 158
           +    +           E +    EE L+ +     +   N+
Sbjct: 145 EVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINR 186

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 2/149 (1%)

Query: 4   EEPKKLETETPTEPPPPPSTEPAAPAAAEPPK--DVADDKTVIPSPPAEDKPEESKALAV 61
           EE    E            +E +   A +  +     ++K       A      S A   
Sbjct: 22  EETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNE 81

Query: 62  VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLSS 121
                 AE  +  K  E +    A     E + +       +    +Q + ++   + + 
Sbjct: 82  AATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANK 141

Query: 122 IVSWENSRKAAVEAELKKIEEQLEKKKAE 150
                         +  K +E       E
Sbjct: 142 TEKEVQPDVPKNTEKTLKPKEIKFNSWEE 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00