Citrus Sinensis ID: 028553

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKAPNTARGELETTYLDEDLR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEcccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHccccEEEEEEccHHHHcccccccEEEcEEEEEEEccccEEEEEEccccccccccccccccccEEEEEEEcHHcc
Coil and Loop (DISEMBL)
malsssssslclhsatvlsgsqfstpqllfpprvsfsyfptklnnnyqnnrnlssSEYYHSSASQKWRASVSFFpaflnkgkDAKVLKEELLEAIapldrgaeatpedQQRVEQIARKLegvnptkeplksdllngkWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRaqnmesgpffnqipvkapntargelettyldedlr
Flexible Loop (DISEMBL)
malsssssslCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIapldrgaeatpedQQRVEQIArklegvnptkeplksdllnGKWELIYTTSqsilqtqrprflRSVRNYQAINVDTLRAQNMESGPffnqipvkapntargelettyldedlr
Low Complexity Region (SEG)
MAlsssssslclhsATVLSGSQFSTPQLLFPPRVSFSYFPTKLnnnyqnnrnLssseyyhssasQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKAPNTARGELETTYLDEDLR
Disordered region (IsUnstruct)
***********L**ATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNY******************KWRASVSFFPAFLNKGKDAKVLKEELLEAI************************************DLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQ******FFN************************
Disordered Region (DISOPRED)
***************************************************************************************KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKAPNTARGELETTYLDEDLR
Disordered Region (DISEMBL)
***********LHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSS**********WRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRG********QRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKAPNTARGELETTYLDEDLR
Disordered Region (DISPRO)
***************************************************************SQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKAPNTARGELETTYLDEDLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKAPNTARGELETTYLDEDLR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9LU85	242	Probable plastid-lipid-as	yes	no	0.917	0.785	0.478	4e-49
Q6DBN2	234	Probable plastid-lipid-as	no	no	0.666	0.589	0.548	1e-42
Q5M755	273	Probable plastid-lipid-as	no	no	0.516	0.391	0.295	2e-05
Q6K439	319	Probable plastid-lipid-as	no	no	0.458	0.297	0.323	0.0004
Q9ZWQ8	323	Plastid-lipid-associated	N/A	no	0.280	0.179	0.389	0.0004
Q94KU6	319	Plastid lipid-associated	N/A	no	0.304	0.197	0.375	0.0005
Q8LAP6	409	Probable plastid-lipid-as	no	no	0.265	0.134	0.357	0.0005
Q9ZP40	358	Plastoglobulin-1, chlorop	N/A	no	0.304	0.175	0.375	0.0007

>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1

 Score =  194 bits (493), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 113/236 (47%), Positives = 146/236 (61%), Gaps = 46/236 (19%)

Query: 1   MALSSSSSSLCLHSATVLS-GSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYY 59
           MAL S     CL +  ++S  + F+    L      F+  PTKL +  + +R        
Sbjct: 1   MALPS-----CLKTGALMSPATGFNFSGSLMKSDSGFAV-PTKLQSTRKGDRE------- 47

Query: 60  HSSASQKWRASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIA 116
                 + +A  SF PAFL +   A   K LK+ELLEAI PL+RGA A+P+DQ R++Q+A
Sbjct: 48  ----RLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLA 103

Query: 117 RKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNM 176
           RK+E VNPTKEPLKSDL+NGKWELIYTTS SILQ ++PRFLRS+ NYQ+INVDTL+ QNM
Sbjct: 104 RKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITNYQSINVDTLKVQNM 163

Query: 177 ESGPFFNQ-------------------------IPVKAPNTARGELETTYLDEDLR 207
           E+ PF+N                          IP+KAP++ARGELE TY+DE+LR
Sbjct: 164 ETWPFYNSVTGDIKPLNSKKVAVKLQVFKILGFIPIKAPDSARGELEITYVDEELR 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1

 Score =  172 bits (436), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 112/164 (68%), Gaps = 26/164 (15%)

Query: 70  SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPL 129
           +V  FP      +  K LK EL+EAI PL+RGA A+P+DQ  ++Q+ARK+E VNPTKEPL
Sbjct: 48  AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPL 107

Query: 130 KSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQ----- 184
           KSDL+NGKWELIYTTS +ILQ ++PRFLRS+ NYQ IN+DTL+ Q ME+ PF+N      
Sbjct: 108 KSDLINGKWELIYTTSAAILQAKKPRFLRSLTNYQCINMDTLKVQRMETWPFYNSVTGDL 167

Query: 185 --------------------IPVKAPN-TARGELETTYLDEDLR 207
                               IPVKAP+ TARGELE TY+DE+LR
Sbjct: 168 TPLNSKTVAVKLQVFKILGFIPVKAPDGTARGELEITYVDEELR 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 8/115 (6%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQ-RVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
           +KEEL EA+  ++RG      D++  +E + + LE  NPT EP    D + G W+LIY+T
Sbjct: 86  IKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYST 145

Query: 145 SQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFN--QIPVKAPNTARGEL 197
             ++L ++R +    +R++ ++  D L+  ++  G   +  +  V+  N   GE 
Sbjct: 146 I-TVLGSKRTKL--GLRDFVSLG-DLLQQIDIAQGKTVHVLKFDVRGLNLLDGEF 196

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
           LK +L EA+   +RG  A+ E +  V ++  +LE  NPT  P ++  LLNGKW L YT+ 
Sbjct: 95  LKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSF 154

Query: 146 QSIL----QTQRPRFLRSVRNYQAINVDTLRAQNME--SGPF 181
             +         P+ ++     Q I+ +    QN    SGP 
Sbjct: 155 SQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPL 196

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT 144
           LK+ L+++    DRG  AT E +  + ++  +LE  NPT  P ++  LLN KW L+YT+
Sbjct: 99  LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTS 157

Citrus unshiu (taxid: 55188)

>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 82  KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSD-LLNGKWEL 140
           ++ +VLK  L++++   DRG  A+ E +  +  +  +LE  NPT  P  +  LLNGKW L
Sbjct: 90  EETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKWIL 149

Query: 141 IYTT 144
            YT+
Sbjct: 150 AYTS 153

May stabilize the accumulated carotenoid structures.

Brassica campestris (taxid: 3711)

>sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 90  ELLEAIAPL-DRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTT 144
           +L++A+  +  RG  A+P+    VE   + LEG+   + P  SDL+ G+W L++TT
Sbjct: 77  KLIDALIGIQGRGKSASPKQLNDVESAVKVLEGLEGIQNPTDSDLIEGRWRLMFTT 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
           LK  L++ +   + G  A  E +  V +   +LE  NPT  P++  DLLNG W L+YT S
Sbjct: 135 LKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEPDLLNGNWVLLYTAS 194

Query: 146 QSIL 149
             +L
Sbjct: 195 SELL 198

May form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.

Pisum sativum (taxid: 3888)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224058986	247	predicted protein [Populus trichocarpa]	0.961	0.805	0.612	7e-64
255575408	262	structural molecule, putative [Ricinus c	0.951	0.751	0.604	7e-64
298204585	228	unnamed protein product [Vitis vinifera]	0.705	0.640	0.713	3e-61
225448061	245	PREDICTED: probable plastid-lipid-associ	0.705	0.595	0.713	3e-61
357445555	364	hypothetical protein MTR_2g007300 [Medic	0.710	0.403	0.686	6e-61
147857589	1238	hypothetical protein VITISV_041584 [Viti	0.700	0.117	0.705	2e-60
449449595	243	PREDICTED: probable plastid-lipid-associ	0.917	0.781	0.579	9e-60
351725241	242	uncharacterized protein LOC100306679 [Gl	0.927	0.793	0.576	1e-59
356558503	245	PREDICTED: probable plastid-lipid-associ	0.685	0.579	0.676	2e-58
388521853	245	unknown [Lotus japonicus]	0.719	0.608	0.670	7e-58

>gi|224058986|ref|XP_002299674.1| predicted protein [Populus trichocarpa] gi|222846932|gb|EEE84479.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 142/232 (61%), Positives = 155/232 (66%), Gaps = 33/232 (14%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYH 60
           MALSSS      HS  VL+ SQFST         S  +F T   +N  +  NLSSS   +
Sbjct: 1   MALSSSP-----HSPAVLTASQFSTHSPFPKLTTSHFFFSTGKPSNQTSYFNLSSS---Y 52

Query: 61  SSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120
           S+  + W A VSFFPAFL KGK AKVLKEELLEAI  LDRGA+A PEDQQRV++IARKLE
Sbjct: 53  STIDRSWSAKVSFFPAFLKKGKSAKVLKEELLEAIDSLDRGADAIPEDQQRVDEIARKLE 112

Query: 121 GVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180
            VNPTKEPLKS LLNGKWEL+YTTSQSILQTQRP+ LRS  NYQAIN D LRAQNMES P
Sbjct: 113 AVNPTKEPLKSGLLNGKWELLYTTSQSILQTQRPKLLRSRTNYQAINADILRAQNMESWP 172

Query: 181 FFNQ-------------------------IPVKAPNTARGELETTYLDEDLR 207
           FFNQ                         IPVKAP  ARGELE TYLDE+LR
Sbjct: 173 FFNQVTADLTPLSAKKVAVKFDVFKILGLIPVKAPGRARGELEITYLDEELR 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575408|ref|XP_002528606.1| structural molecule, putative [Ricinus communis] gi|223531951|gb|EEF33764.1| structural molecule, putative [Ricinus communis]

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 145/240 (60%), Positives = 163/240 (67%), Gaps = 43/240 (17%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQLLFPPRVSFS----YFPTK-LNNNYQNN---RN 52
           MALSSSSS        +L+ S FST     PP    +    YF ++ +  NY        
Sbjct: 10  MALSSSSS------PAILTASHFSTN----PPNPKLTTTTFYFSSRFITANYSKTSFLNL 59

Query: 53  LSSSEYYHSSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRV 112
            SS+   +S+   KWRA VSFFPAFL K KDA VLKEELL+AIA LDRGAEATPEDQQRV
Sbjct: 60  NSSNNDNNSTFDDKWRAKVSFFPAFLRKKKDANVLKEELLDAIASLDRGAEATPEDQQRV 119

Query: 113 EQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLR 172
           ++IAR+LE VNPTK+PLKSDL+NGKWELIYTTSQSILQTQRP+FLRS  NYQAINVDTLR
Sbjct: 120 DEIARQLEAVNPTKQPLKSDLINGKWELIYTTSQSILQTQRPKFLRSKTNYQAINVDTLR 179

Query: 173 AQNMESGPFFNQ-------------------------IPVKAPNTARGELETTYLDEDLR 207
           AQNMES PFFNQ                         IPVKAP +ARGELETTYLDE+LR
Sbjct: 180 AQNMESWPFFNQVTADLTPLNAKKVAVKFDTFKIASLIPVKAPGSARGELETTYLDEELR 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204585|emb|CBI23860.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 131/171 (76%), Gaps = 25/171 (14%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQRV+QIA +LE 
Sbjct: 35  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQRVDQIASELEA 94

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 95  VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 154

Query: 182 FNQ-------------------------IPVKAPNTARGELETTYLDEDLR 207
           FNQ                         IP+KAP  ARGELE TYLDE+LR
Sbjct: 155 FNQVTADLTPLTAKKVAVKFDSFKILGLIPIKAPGRARGELEITYLDEELR 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448061|ref|XP_002275707.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Vitis vinifera]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 131/171 (76%), Gaps = 25/171 (14%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQRV+QIA +LE 
Sbjct: 52  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQRVDQIASELEA 111

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 112 VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 171

Query: 182 FNQ-------------------------IPVKAPNTARGELETTYLDEDLR 207
           FNQ                         IP+KAP  ARGELE TYLDE+LR
Sbjct: 172 FNQVTADLTPLTAKKVAVKFDSFKILGLIPIKAPGRARGELEITYLDEELR 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445555|ref|XP_003593055.1| hypothetical protein MTR_2g007300 [Medicago truncatula] gi|355482103|gb|AES63306.1| hypothetical protein MTR_2g007300 [Medicago truncatula]

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 132/172 (76%), Gaps = 25/172 (14%)

Query: 61  SSASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120
           ++ SQKWR +VSFFPA   KGKDA  +KEELL+AIA LDRGA+ATPEDQQ V+QIAR+LE
Sbjct: 49  ATISQKWRTNVSFFPAIFKKGKDASTIKEELLDAIASLDRGADATPEDQQSVDQIARQLE 108

Query: 121 GVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180
            VNPTK+PLKS LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAIN DTLRAQNMESGP
Sbjct: 109 AVNPTKQPLKSSLLDGKWELIYTTSQSILQTKRPKLLRSVTNYQAINADTLRAQNMESGP 168

Query: 181 FFNQ-------------------------IPVKAPNTARGELETTYLDEDLR 207
           FFNQ                         IPVKAP+TARGELE TYLDE+LR
Sbjct: 169 FFNQVTADLTPINAKKVAVKFDTFKIGGLIPVKAPDTARGELEITYLDEELR 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857589|emb|CAN80995.1| hypothetical protein VITISV_041584 [Vitis vinifera]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/170 (70%), Positives = 129/170 (75%), Gaps = 25/170 (14%)

Query: 62  SASQKWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121
           S S+KWR  VSFFPAFL KGKDAK LKEELL+AIAPLDRGA+AT EDQQ V+QIA +LE 
Sbjct: 52  SPSKKWRVGVSFFPAFLKKGKDAKALKEELLDAIAPLDRGADATLEDQQXVDQIASELEA 111

Query: 122 VNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPF 181
           VN  KEPLKSDLLNGKWELIYTTSQSILQTQRP+FLRS+ NYQAINVDTLRAQNMES PF
Sbjct: 112 VNSIKEPLKSDLLNGKWELIYTTSQSILQTQRPKFLRSIANYQAINVDTLRAQNMESFPF 171

Query: 182 FNQ-------------------------IPVKAPNTARGELETTYLDEDL 206
           FNQ                         IP+KAP  ARGELE TYLDE+L
Sbjct: 172 FNQVTADLTPLTAKKVAVKFDSFKILGLIPIKAPGRARGELEITYLDEEL 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449595|ref|XP_004142550.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cucumis sativus] gi|449479703|ref|XP_004155682.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cucumis sativus]

 Score =  235 bits (599), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 149/226 (65%), Gaps = 36/226 (15%)

Query: 9   SLCLHSATVLSGSQFSTPQLLFPPRVSFSYFPTKLNNNYQNNRNLSSSEYYHSSASQKWR 68
           ++ L S+T    ++   P    PPR      P+    N  +N NL       SS S KWR
Sbjct: 4   AVALSSSTATPTTKLWPPSTSQPPRFLLPIIPS----NPSSNTNL-----LTSSPSHKWR 54

Query: 69  ASVSFFPAFLNKGKDAKV--LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTK 126
             +SFFPAFLNKGK   V  LK+ELL+AI PLDRGAEATPEDQ+ V+QI+RKLE VNPTK
Sbjct: 55  LRISFFPAFLNKGKGNNVTALKQELLQAIEPLDRGAEATPEDQEMVDQISRKLEAVNPTK 114

Query: 127 EPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQ-- 184
           EPLKSDLLNGKWELIYTTS+SILQT+RP+FLRS  NYQ INVD+LRAQNMES PFFNQ  
Sbjct: 115 EPLKSDLLNGKWELIYTTSRSILQTERPKFLRSKLNYQGINVDSLRAQNMESWPFFNQVT 174

Query: 185 -----------------------IPVKAPNTARGELETTYLDEDLR 207
                                  IPVKAP  ARGELE TYLDE+LR
Sbjct: 175 ADLKPLNSRKVAVQFDTFKILGLIPVKAPGRARGELEITYLDEELR 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725241|ref|NP_001238621.1| uncharacterized protein LOC100306679 [Glycine max] gi|255629261|gb|ACU14975.1| unknown [Glycine max]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/234 (57%), Positives = 153/234 (65%), Gaps = 42/234 (17%)

Query: 1   MALSSSSSSLCLHSATVLSGSQFSTPQL-LFPPRVSFSYFPTKLNNNYQNNRNLSSSEYY 59
           MALSS S    L SA     + +S P     P  +S SYFP         N   S+    
Sbjct: 1   MALSSPS----LFSAV---NATYSVPHFHALPLSLSSSYFPI--------NVRPSTHHVL 45

Query: 60  HSSASQKWRASVSFFPAFLN-KGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARK 118
            S  + KWR  VSFF +FL  KGKDAK++KEELLEAIAPLDRGA+ATP+DQQ V+QIAR+
Sbjct: 46  VSDHNHKWRTKVSFFTSFLKQKGKDAKIIKEELLEAIAPLDRGADATPQDQQTVDQIARE 105

Query: 119 LEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMES 178
           LE V P KEPLKS+LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAINVDTLRAQNMES
Sbjct: 106 LEAVTPIKEPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVANYQAINVDTLRAQNMES 165

Query: 179 GPFFNQ-------------------------IPVKAPNTARGELETTYLDEDLR 207
            PFFNQ                         IP+KAP  ARGELE TYLDE+LR
Sbjct: 166 WPFFNQVTADLTPLNPRKVAVKFDTFKIGGIIPIKAPGRARGELEITYLDEELR 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558503|ref|XP_003547545.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Glycine max]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 129/167 (77%), Gaps = 25/167 (14%)

Query: 66  KWRASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPT 125
           KWRA VSFF +FL KGKDAK++KEE+LEAIAPLDRGA+ATP+DQQ ++QIAR+LE V P 
Sbjct: 56  KWRAKVSFFTSFLKKGKDAKIIKEEMLEAIAPLDRGADATPQDQQTIDQIARELEAVTPI 115

Query: 126 KEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQ- 184
           KEPLK++LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAINVDTLRAQNMES PFFNQ 
Sbjct: 116 KEPLKTNLLDGKWELIYTTSQSILQTKRPKLLRSVANYQAINVDTLRAQNMESWPFFNQV 175

Query: 185 ------------------------IPVKAPNTARGELETTYLDEDLR 207
                                   IP+KAP  ARGELE TYLDE+LR
Sbjct: 176 TADLTPLNPRKVAVKFDTFKIGGIIPIKAPGRARGELEITYLDEELR 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521853|gb|AFK48988.1| unknown [Lotus japonicus]

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 133/179 (74%), Gaps = 30/179 (16%)

Query: 59  YHSS----ASQKWRASVSFFPAFLN-KGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVE 113
           YH+S     S+KWRA VSFFPAFLN K KDA  +K+ELL+AIAPLDRGA+AT EDQQ ++
Sbjct: 44  YHTSHSLAISEKWRAKVSFFPAFLNNKRKDASTIKQELLDAIAPLDRGADATLEDQQTID 103

Query: 114 QIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRA 173
           QIARKLE VNPTK PLKS+LL+GKWELIYTTSQSILQT+RP+ LRSV NYQAIN DTLRA
Sbjct: 104 QIARKLEAVNPTKNPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVTNYQAINADTLRA 163

Query: 174 QNMESGPFFNQ-------------------------IPVKAPNTARGELETTYLDEDLR 207
           QNMES PFFNQ                         IPVKAP TARG LE TYLDE+LR
Sbjct: 164 QNMESWPFFNQVTADLTPVNTRKVAVKFDTFKIAGFIPVKAPETARGSLEITYLDEELR 222

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2092150	242	AT3G26070 [Arabidopsis thalian	0.570	0.487	0.669	3.3e-47
TAIR|locus:2092165	234	AT3G26080 [Arabidopsis thalian	0.560	0.495	0.612	1.1e-34
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.545	0.355	0.294	1.4e-07
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.483	0.322	0.305	8.6e-07
TAIR|locus:2178133	273	AT5G09820 [Arabidopsis thalian	0.512	0.388	0.298	9e-07
TAIR|locus:2062497	376	AT2G35490 [Arabidopsis thalian	0.458	0.252	0.326	3.6e-05
TAIR|locus:2090890	284	FIB4 "fibrillin 4" [Arabidopsi	0.347	0.253	0.358	0.00016
UNIPROTKB|O99019	326	O99019 "Light-induced protein,	0.550	0.349	0.269	0.0003
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.550	0.349	0.269	0.0003
TAIR|locus:2026052	409	AT1G51110 [Arabidopsis thalian	0.265	0.134	0.357	0.00075

TAIR|locus:2092150 AT3G26070 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 81/121 (66%), Positives = 100/121 (82%)

Query:    68 RASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNP 124
             +A  SF PAFL +   A   K LK+ELLEAI PL+RGA A+P+DQ R++Q+ARK+E VNP
Sbjct:    52 QAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNP 111

Query:   125 TKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQ 184
             TKEPLKSDL+NGKWELIYTTS SILQ ++PRFLRS+ NYQ+INVDTL+ QNME+ PF+N 
Sbjct:   112 TKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITNYQSINVDTLKVQNMETWPFYNS 171

Query:   185 I 185
             +
Sbjct:   172 V 172

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2092165 AT3G26080 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 71/116 (61%), Positives = 91/116 (78%)

Query:    70 SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPL 129
             +V  FP      +  K LK EL+EAI PL+RGA A+P+DQ  ++Q+ARK+E VNPTKEPL
Sbjct:    48 AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPL 107

Query:   130 KSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQI 185
             KSDL+NGKWELIYTTS +ILQ ++PRFLRS+ NYQ IN+DTL+ Q ME+ PF+N +
Sbjct:   108 KSDLINGKWELIYTTSAAILQAKKPRFLRSLTNYQCINMDTLKVQRMETWPFYNSV 163

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 35/119 (29%), Positives = 60/119 (50%)

Query:    69 ASVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEP 128
             ++VS     +   ++ + LK  L +++   DRG   + + +  + ++  +LE  NPT  P
Sbjct:    76 STVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAP 135

Query:   129 LKS-DLLNGKWELIYTTSQSI--LQTQRPRFLRSVRNY-QAINVDTLRAQNME--SGPF 181
              ++  LLNGKW L YT+   +  L ++R   L  V    Q I+ D+   QN    +GPF
Sbjct:   136 NEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPF 194

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
 Identities = 33/108 (30%), Positives = 56/108 (51%)

Query:    82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWEL 140
             ++ + LK  L++++   DRG  A+ E +  +  +  +LE  NPT  P ++  LLNGKW L
Sbjct:    81 EETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWIL 140

Query:   141 IYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVK 188
              YT+  ++     P   R +     I VD + +Q ++S  F  Q  V+
Sbjct:   141 AYTSFVNLF----PLLSRGI--VPLIKVDEI-SQTIDSDNFTVQNSVR 181

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2178133 AT5G09820 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
 Identities = 34/114 (29%), Positives = 63/114 (55%)

Query:    87 LKEELLEAIAPLDRGAEATPEDQQ-RVEQIARKLEGVNPTKEPL-KSDLLNGKWELIYTT 144
             +KEEL EA+  ++RG      D++  +E + + LE  NPT EP  + D + G W+LIY+T
Sbjct:    86 IKEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYST 145

Query:   145 SQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFN--QIPVKAPNTARGE 196
               ++L ++R +    +R++ ++  D L+  ++  G   +  +  V+  N   GE
Sbjct:   146 I-TVLGSKRTKL--GLRDFVSLG-DLLQQIDIAQGKTVHVLKFDVRGLNLLDGE 195

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

TAIR|locus:2062497 AT2G35490 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
 Identities = 33/101 (32%), Positives = 54/101 (53%)

Query:    87 LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTT- 144
             LK  L +++   + G +A  E +  V ++  +LE +NPT  PL++ +LL+G W L+YT  
Sbjct:   153 LKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAF 212

Query:   145 SQSI-LQTQRPRFLRSVRNY-QAINVDTLRAQNME--SGPF 181
             S+ I L       L  V++  Q+I+ + L   N    S PF
Sbjct:   213 SELIPLLAAGSTPLLKVKSISQSIDTNNLIIDNSTTLSSPF 253

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2090890 FIB4 "fibrillin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query:    75 PAFLNKGKDAK---VLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS 131
             P+    G D K   +LK +LL  ++ L+RG  A+ +D +R E  A++LE      + L  
Sbjct:    72 PSSSGSGGDDKQIALLKLKLLSVVSGLNRGLVASVDDLERAEVAAKELETAGGPVD-LTD 130

Query:   132 DL--LNGKWELIYTTSQS 147
             DL  L GKW L+Y+++ S
Sbjct:   131 DLDKLQGKWRLLYSSAFS 148

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|O99019 O99019 "Light-induced protein, chloroplastic" [Solanum demissum (taxid:50514)]

 Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 34/126 (26%), Positives = 62/126 (49%)

Query:    83 DAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELI 141
             + ++LK++L +++   +RG  A+ E +  + ++  +LE  NP   P ++  LLNGKW L 
Sbjct:    98 EIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILA 157

Query:   142 YTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKAPNTARGELETTY 201
             YT+   +     P   R   N   + V+ + +Q ++S  F  Q  V       G L TT 
Sbjct:   158 YTSFSGLF----PLLSRG--NLPLVRVEEI-SQTIDSESFTVQNSV----VFAGPLATTS 206

Query:   202 LDEDLR 207
             +  + +
Sbjct:   207 ISTNAK 212

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 34/126 (26%), Positives = 62/126 (49%)

Query:    83 DAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELI 141
             + ++LK++L +++   +RG  A+ E +  + ++  +LE  NP   P ++  LLNGKW L 
Sbjct:    98 EIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILA 157

Query:   142 YTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKAPNTARGELETTY 201
             YT+   +     P   R   N   + V+ + +Q ++S  F  Q  V       G L TT 
Sbjct:   158 YTSFSGLF----PLLSRG--NLPLVRVEEI-SQTIDSESFTVQNSV----VFAGPLATTS 206

Query:   202 LDEDLR 207
             +  + +
Sbjct:   207 ISTNAK 212

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2026052 AT1G51110 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query:    90 ELLEAIAPLD-RGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTT 144
             +L++A+  +  RG  A+P+    VE   + LEG+   + P  SDL+ G+W L++TT
Sbjct:    77 KLIDALIGIQGRGKSASPKQLNDVESAVKVLEGLEGIQNPTDSDLIEGRWRLMFTT 132

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026573001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (245 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)			•	•					0.528
	GSVIVG00022574001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (207 aa)			•						0.505
	GSVIVG00035640001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (118 aa)			•						0.504
	GSVIVG00026973001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (166 aa)			•						0.504
	GSVIVG00009465001	SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (234 aa)			•						0.503
	GSVIVG00006255001	SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (442 aa)			•						0.502
	GSVIVG00007397001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (251 aa)			•						0.501
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•						0.499
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.496
	GSVIVG00027603001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (254 aa)			•						0.496

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	5e-29

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score =  106 bits (267), Expect = 5e-29
 Identities = 57/181 (31%), Positives = 79/181 (43%), Gaps = 60/181 (33%)

Query: 87  LKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTS 145
           LK +LL+AI   +RG  A+ +D+  +E    +LE +NPT  P +S DLLNGKW L+YTTS
Sbjct: 3   LKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTTS 62

Query: 146 QSI---LQTQRPRFLRSVRNYQAINVDTLRAQNME--SGPFFN----------------- 183
           + +   L   R   L+  + YQ I+V+ L   N    SGP                    
Sbjct: 63  KELLPLLARGRLPLLKVGQIYQTIDVNNLTVYNSVTFSGPLAEGSFSVRAKFEIRSPKRV 122

Query: 184 ----------------------------------QIPVK---APNTARGELETTYLDEDL 206
                                             Q+P+    + + A+G LETTYLDEDL
Sbjct: 123 QIRFERGVLGTPQLLKGSLTPLQDTASNIRGISSQLPLPFPLSGDRAKGWLETTYLDEDL 182

Query: 207 R 207
           R
Sbjct: 183 R 183

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.97

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.97  E-value=4e-31  Score=219.73  Aligned_cols=95  Identities=42%  Similarity=0.669  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCcEEEEEeecccccccc---cCCcceeec
Q 028553           85 KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTSQSILQT---QRPRFLRSV  160 (207)
Q Consensus        85 ~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEalnPt~~P~~s-~lL~G~W~LiYTTs~~ilg~---~~~p~l~vG  160 (207)
                      +++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+.++.+.   .+.+++.+|
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~   80 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG   80 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence            37999999999999999999999999999999999999999999998 99999999999999988753   556778999


Q ss_pred             eeeEEEEcCCCeeeeeeeC
Q 028553          161 RNYQAINVDTLRAQNMESG  179 (207)
Q Consensus       161 ~i~Q~ID~~~~rv~Nvv~f  179 (207)
                      +|||+||.+++++.|++.+
T Consensus        81 ~v~Q~id~~~~~~~N~v~~   99 (198)
T PF04755_consen   81 RVFQTIDADNGRVENVVEL   99 (198)
T ss_pred             ceEEEEECCCceEEEEEEE
Confidence            9999999999999999984

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00