Citrus Sinensis ID: 028599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccHHHHcccccEEcccccccEEEEcccccEEcccccccEEEEccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEccEEEEccccEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEccEEEEEEEEccccccHHHHHHHHHHHccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEcHHHHHHccccccHHccccccccEEEcccccEEEEcccccEEEEcccccEEEEccccccccEEEEEEcccccccccHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccEEEEEEEEEEEcccccEEEEcccccccEccccccEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHccEEEEccc
Coil and Loop (DISEMBL)
MALILSSyifsdfgfrntaLAQQsvgfreyidtfdgysfkypqnwiqvrgagadifyrdpyvldenvsvelsspsssryksvedlgppkeaGRKVLRQYLTEFMStrlgvrresnilstssrvaddgRLYYLVEVNIKsfannnelavmpkdrvvnlewdrRYLSVLGvennrlyelrlqtpenvfveEENDLRQVIDSFRVNKVSA
Flexible Loop (DISEMBL)
MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSvelsspsssryksvedlgppkeagrkVLRQYLTEfmstrlgvrresnilstssrvaddgrLYYLVEVNIKsfannnelavmpkdrvvnleWDRRYLSVlgvennrlyelrlqtpenvfveeendlrqvidsfrvnkvsa
Low Complexity Region (SEG)
MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELsspsssRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
Disordered region (IsUnstruct)
**LILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENV***************************VLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVID*********
Disordered Region (DISOPRED)
*ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPS*********LGPPKEAGRKVLRQYLT***********************DDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENV*VEEENDLRQVIDSFRVNKV**
Disordered Region (DISEMBL)
MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVS*****************GPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
Disordered Region (DISPRO)
MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFM***********ILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKVSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
O23403	287	PsbP domain-containing pr	yes	no	0.980	0.707	0.756	9e-83
P82538	230	PsbP-like protein 1, chlo	no	no	0.748	0.673	0.262	8e-08

>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1

 Score =  306 bits (783), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 177/205 (86%), Gaps = 2/205 (0%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           M L++S  I S      TA A   V FREYIDTFDGYSFKYPQNWIQVRGAGADIF+RDP
Sbjct: 85  MGLLMSGLIVSQANL-PTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 142

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
            VLDEN+SVE SSPSSS Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+R++NILSTS
Sbjct: 143 VVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTS 202

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV  LEW+RRYL+VLGVEN+RLY +RLQ
Sbjct: 203 SRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQ 262

Query: 181 TPENVFVEEENDLRQVIDSFRVNKV 205
           TPE VF+EEE DLR+V+DSFRV K+
Sbjct: 263 TPEKVFLEEEKDLRRVMDSFRVEKI 287

Arabidopsis thaliana (taxid: 3702)

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 28/183 (15%)

Query: 21  AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 80
           A+   GF    D  D Y+F YP  W +V   G D  Y+D     E+VSV L  P+S +  
Sbjct: 75  AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNL-VPTSKQ-- 131

Query: 81  SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSF 140
           ++++ GPPK+    ++++ L            +   L  +S    DG+ YY  E  ++  
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTVQ-- 181

Query: 141 ANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSF 200
           A N               + R  L  + V N   Y L     E  + + ++ L  V+DSF
Sbjct: 182 ARN---------------YTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226

Query: 201 RVN 203
           ++ 
Sbjct: 227 KIT 229

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224124634	212	predicted protein [Populus trichocarpa]	0.990	0.966	0.892	1e-99
224124990	265	predicted protein [Populus trichocarpa]	0.995	0.777	0.868	1e-97
255542948	265	Thylakoid lumenal 21.5 kDa protein, chlo	0.990	0.773	0.863	3e-97
359487555	282	PREDICTED: psbP domain-containing protei	1.0	0.734	0.859	7e-96
311335431	257	PsbP domain protein 1 [Gossypium hirsutu	1.0	0.805	0.860	7e-96
296089803	248	unnamed protein product [Vitis vinifera]	1.0	0.834	0.859	1e-95
449443516	258	PREDICTED: psbP domain-containing protei	0.975	0.782	0.845	2e-92
356505763	258	PREDICTED: psbP domain-containing protei	0.985	0.790	0.816	5e-90
388502234	326	unknown [Lotus japonicus]	0.975	0.619	0.809	6e-90
356571066	227	PREDICTED: LOW QUALITY PROTEIN: psbP dom	0.971	0.885	0.772	5e-87

>gi|224124634|ref|XP_002330072.1| predicted protein [Populus trichocarpa] gi|222871497|gb|EEF08628.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 183/205 (89%), Positives = 199/205 (97%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           MALILSSY+FS+FGF N A AQQSVGFREYID FDGYSFKYPQNWIQVRGAGADIF+RDP
Sbjct: 8   MALILSSYMFSEFGFDNLAFAQQSVGFREYIDQFDGYSFKYPQNWIQVRGAGADIFFRDP 67

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           +VLDEN+SVELSSPSSSRYKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRESNILSTS
Sbjct: 68  FVLDENLSVELSSPSSSRYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 127

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDG+LYY VEVNIKS+ANNNELAVMP++RVV LEWDRRYLSVLGVENN+LYELRLQ
Sbjct: 128 SRVADDGKLYYQVEVNIKSYANNNELAVMPRERVVRLEWDRRYLSVLGVENNQLYELRLQ 187

Query: 181 TPENVFVEEENDLRQVIDSFRVNKV 205
           TPENVFVEEENDLR+V+DSFRVNK+
Sbjct: 188 TPENVFVEEENDLRKVMDSFRVNKI 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124990|ref|XP_002319475.1| predicted protein [Populus trichocarpa] gi|118485159|gb|ABK94442.1| unknown [Populus trichocarpa] gi|222857851|gb|EEE95398.1| predicted protein [Populus trichocarpa]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 179/206 (86%), Positives = 197/206 (95%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           MALILSSYIFS+ GF N A AQ+SVGFREYID FDGYS K+PQNWIQVRGAGADIF+RDP
Sbjct: 59  MALILSSYIFSEVGFNNIAFAQRSVGFREYIDQFDGYSLKHPQNWIQVRGAGADIFFRDP 118

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           +VLDEN+SVELSSPSSS YKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRESNI+STS
Sbjct: 119 FVLDENLSVELSSPSSSNYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIISTS 178

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDG+LYY VEVNIKS+ANNNELAVMP++RVV LEW+RRY+SVLGVENNRLYELRLQ
Sbjct: 179 SRVADDGKLYYQVEVNIKSYANNNELAVMPQERVVRLEWNRRYMSVLGVENNRLYELRLQ 238

Query: 181 TPENVFVEEENDLRQVIDSFRVNKVS 206
           TPENVFVEEENDLRQV+DSFRVNKV+
Sbjct: 239 TPENVFVEEENDLRQVMDSFRVNKVT 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542948|ref|XP_002512537.1| Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223548498|gb|EEF49989.1| Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 177/205 (86%), Positives = 196/205 (95%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           MALI SS I S+ GF ++ALAQ SVGFREYIDTFDGYSFKYP+NWIQVRGAGADIF+RDP
Sbjct: 61  MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           YVLDEN+SVE+SSPSSS+Y SVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRES+ILSTS
Sbjct: 121 YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 180

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDG+LYY VEVNIKS+ANNNE+AVMP+DRVV LEW+RRYLSVLGVENNRLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 181 TPENVFVEEENDLRQVIDSFRVNKV 205
           TPENVFVEEENDLRQV++SFRVNKV
Sbjct: 241 TPENVFVEEENDLRQVMESFRVNKV 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487555|ref|XP_002281448.2| PREDICTED: psbP domain-containing protein 1, chloroplastic [Vitis vinifera]

 Score =  355 bits (911), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 178/207 (85%), Positives = 192/207 (92%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           MALI SSYIFS  G  + ALAQ SVGFREYIDTFDGYSFKYPQNWIQVRG+GADIF+RDP
Sbjct: 76  MALIFSSYIFSRVGLHDVALAQPSVGFREYIDTFDGYSFKYPQNWIQVRGSGADIFFRDP 135

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           +VLDEN+SVELSSPSSSRYKSVEDLG P+EAG+KVL+QYLTEFMSTRLGVRRESNI+STS
Sbjct: 136 FVLDENLSVELSSPSSSRYKSVEDLGQPQEAGKKVLQQYLTEFMSTRLGVRRESNIVSTS 195

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDGR YY VEVNIKS+ANNNELAVMP DRV  LEWDRRYLSVLGVENNRLYELRLQ
Sbjct: 196 SRVADDGRTYYQVEVNIKSYANNNELAVMPTDRVTRLEWDRRYLSVLGVENNRLYELRLQ 255

Query: 181 TPENVFVEEENDLRQVIDSFRVNKVSA 207
           TPE+VF+EEEN+LRQV+DSFRVNK S 
Sbjct: 256 TPESVFLEEENELRQVMDSFRVNKASG 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311335431|gb|ADP89574.1| PsbP domain protein 1 [Gossypium hirsutum]

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 179/208 (86%), Positives = 195/208 (93%), Gaps = 1/208 (0%)

Query: 1   MALILSSYIFSDFGFR-NTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRD 59
           MALILS+YIFS+ G   N A A+ SVGFREYIDTFDGYS KYPQNWIQVRGAGADIF+RD
Sbjct: 50  MALILSTYIFSEVGLHDNIAFAEPSVGFREYIDTFDGYSLKYPQNWIQVRGAGADIFFRD 109

Query: 60  PYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILST 119
           PYVLDEN+SVELSSPSSSRYK+VEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRESNILST
Sbjct: 110 PYVLDENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILST 169

Query: 120 SSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRL 179
           SSRVADDG+LYY VEVNIKS+AN NELAVMP+DRV  LEW+RRYLSVLGVENNRLYELRL
Sbjct: 170 SSRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRL 229

Query: 180 QTPENVFVEEENDLRQVIDSFRVNKVSA 207
           QTPE+VFVEEENDLRQV+DSFRVNKV+ 
Sbjct: 230 QTPESVFVEEENDLRQVMDSFRVNKVAG 257

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089803|emb|CBI39622.3| unnamed protein product [Vitis vinifera]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 178/207 (85%), Positives = 192/207 (92%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           MALI SSYIFS  G  + ALAQ SVGFREYIDTFDGYSFKYPQNWIQVRG+GADIF+RDP
Sbjct: 42  MALIFSSYIFSRVGLHDVALAQPSVGFREYIDTFDGYSFKYPQNWIQVRGSGADIFFRDP 101

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           +VLDEN+SVELSSPSSSRYKSVEDLG P+EAG+KVL+QYLTEFMSTRLGVRRESNI+STS
Sbjct: 102 FVLDENLSVELSSPSSSRYKSVEDLGQPQEAGKKVLQQYLTEFMSTRLGVRRESNIVSTS 161

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDGR YY VEVNIKS+ANNNELAVMP DRV  LEWDRRYLSVLGVENNRLYELRLQ
Sbjct: 162 SRVADDGRTYYQVEVNIKSYANNNELAVMPTDRVTRLEWDRRYLSVLGVENNRLYELRLQ 221

Query: 181 TPENVFVEEENDLRQVIDSFRVNKVSA 207
           TPE+VF+EEEN+LRQV+DSFRVNK S 
Sbjct: 222 TPESVFLEEENELRQVMDSFRVNKASG 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443516|ref|XP_004139523.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Cucumis sativus] gi|449520599|ref|XP_004167321.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Cucumis sativus]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/207 (84%), Positives = 192/207 (92%), Gaps = 5/207 (2%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           MAL+LS+ IFS     N+ALA  SVG  EYIDTFDGYSFKYP+NWIQVRGAGADIF+RDP
Sbjct: 57  MALMLSTCIFS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 111

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           +VLDEN+SVE SSPSSSRY SV+DLGPP+EAG+KVL+QYLTEFMSTRLGVRRESNILSTS
Sbjct: 112 FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 171

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SR+ADDGR YY VEVNIKS+ANNNELAVMP+DRVV LEWDRRYLSVLGVEN+RLYELRLQ
Sbjct: 172 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 231

Query: 181 TPENVFVEEENDLRQVIDSFRVNKVSA 207
           TPENVFVEEENDLRQV+DSFRVNKV+A
Sbjct: 232 TPENVFVEEENDLRQVMDSFRVNKVNA 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505763|ref|XP_003521659.1| PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Glycine max]

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 169/207 (81%), Positives = 191/207 (92%), Gaps = 3/207 (1%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           ++LILSSY  S+ G    ALAQQS  FREYID FDGYSF+YP +WIQVRGAGADIF+RDP
Sbjct: 55  LSLILSSYFLSEAGL---ALAQQSPVFREYIDAFDGYSFQYPGSWIQVRGAGADIFFRDP 111

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           +VLDEN+S+E+SSPSSS+YKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRESNILSTS
Sbjct: 112 FVLDENLSLEISSPSSSQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 171

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDGRLYY VEVNIKS+ANNNELAVMP+ RVV LEWDRRYLSVLGVENN+LYELRLQ
Sbjct: 172 SRVADDGRLYYQVEVNIKSYANNNELAVMPEARVVRLEWDRRYLSVLGVENNQLYELRLQ 231

Query: 181 TPENVFVEEENDLRQVIDSFRVNKVSA 207
            PENVF EEENDLR+++DSFRVNK++A
Sbjct: 232 VPENVFSEEENDLRRIMDSFRVNKIAA 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502234|gb|AFK39183.1| unknown [Lotus japonicus]

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 166/205 (80%), Positives = 189/205 (92%), Gaps = 3/205 (1%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           M+LILSS I S  G    A AQQ   FREY+DTFDGYSFKYP NWIQVRGAGADIF+RDP
Sbjct: 123 MSLILSSCILSKVGL---AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAGADIFFRDP 179

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           Y+LDEN+S+E+SSPSSS+YKSVEDLGPP+EAG+KVL+QYLTEFMSTRLGVRRE+N+LSTS
Sbjct: 180 YILDENLSLEISSPSSSQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTS 239

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDG+LYY VEVNIKS+A+NNELAVMP+DRVV LEWDRRYLSVLGVENN+LYELRLQ
Sbjct: 240 SRVADDGKLYYQVEVNIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQ 299

Query: 181 TPENVFVEEENDLRQVIDSFRVNKV 205
           TPENVF EEE+DLR+V+DSFRVN++
Sbjct: 300 TPENVFQEEESDLRRVMDSFRVNQI 324

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571066|ref|XP_003553702.1| PREDICTED: LOW QUALITY PROTEIN: psbP domain-containing protein 1, chloroplastic-like [Glycine max]

 Score =  325 bits (834), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 160/207 (77%), Positives = 184/207 (88%), Gaps = 6/207 (2%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           M+LILSSY+ S+ G    ALAQQS  FREYID FDG SF+YP +WIQVRGAGADIF+RDP
Sbjct: 27  MSLILSSYVLSEVGL---ALAQQSPVFREYIDAFDGCSFQYPGSWIQVRGAGADIFFRDP 83

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
           +VLDEN+SVE+S PSSS+YK+VEDLG P+EAG+KVL+QYLTEFMSTRLGVRRESNILSTS
Sbjct: 84  FVLDENLSVEISXPSSSQYKNVEDLGAPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 143

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRV DDGRLYY +EVNIKS+ANNNELAVMP+DRVV LEWD RYLSVLGVENN+LYELRLQ
Sbjct: 144 SRVTDDGRLYYQIEVNIKSYANNNELAVMPEDRVVRLEWDPRYLSVLGVENNQLYELRLQ 203

Query: 181 TPENVFVEEENDLRQVIDSFRVNKVSA 207
               VF EEEND+R+++DSFRVNK++ 
Sbjct: 204 X---VFSEEENDIRRIMDSFRVNKIAT 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.980	0.707	0.726	3.9e-76
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.521	0.469	0.260	7e-07

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 149/205 (72%), Positives = 171/205 (83%)

Query:     1 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
             M L++S  I S      TA A   V FREYIDTFDGYSFKYPQNWIQVRGAGADIF+RDP
Sbjct:    85 MGLLMSGLIVSQANLP-TAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 142

Query:    61 YVLDENVSVELXXXXXXRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
              VLDEN+SVE        Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+R++NILSTS
Sbjct:   143 VVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTS 202

Query:   121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
             SRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV  LEW+RRYL+VLGVEN+RLY +RLQ
Sbjct:   203 SRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQ 262

Query:   181 TPENVFVEEENDLRQVIDSFRVNKV 205
             TPE VF+EEE DLR+V+DSFRV K+
Sbjct:   263 TPEKVFLEEEKDLRRVMDSFRVEKI 287

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query:    21 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELXXXXXXRYK 80
             A+   GF    D  D Y+F YP  W +V   G D  Y+D     E+VSV L        +
Sbjct:    75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSK---Q 131

Query:    81 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS 139
             ++++ GPPK+    ++++ L           +++ ++  S    D G+ YY  E  +++
Sbjct:   132 TIKEFGPPKQIAETLIKKVLAP-------PNQKTTLIDASEHDVD-GKTYYQFEFTVQA 182

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23403	PPD1_ARATH	No assigned EC number	0.7560	0.9806	0.7073	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.131.248.1	hypothetical protein (212 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.527
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.523
	eugene3.00020518	SubName- Full=Putative uncharacterized protein; (262 aa)			•				•		0.523
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)			•				•		0.523
	gw1.XIV.2732.1	hypothetical protein (109 aa)			•	•					0.518
	estExt_Genewise1_v1.C_LG_XIII0363	hypothetical protein (158 aa)			•	•					0.514
	estExt_fgenesh4_pg.C_290310	hypothetical protein (227 aa)			•	•					0.508
	gw1.XV.3200.1	hypothetical protein (265 aa)			•						0.506
	gw1.III.1425.1	hypothetical protein (172 aa)			•						0.506
	gw1.II.1221.1	hypothetical protein (155 aa)			•						0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	1e-107
pfam01789	163	pfam01789, PsbP, PsbP	5e-53

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score =  308 bits (790), Expect = e-107
 Identities = 156/204 (76%), Positives = 178/204 (87%), Gaps = 2/204 (0%)

Query: 1   MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
           M L++S  I S+     TA A   V FREYIDTFDGYSFKYPQNWIQVRGAGADIF+RDP
Sbjct: 85  MGLLMSGLIVSEANL-PTAFASIPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 142

Query: 61  YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
            VLDEN+SVE SSPSSS+Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+RE+NILSTS
Sbjct: 143 VVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTS 202

Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
           SRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV  LEW+RRYL+VLGVEN+RLY +RLQ
Sbjct: 203 SRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQ 262

Query: 181 TPENVFVEEENDLRQVIDSFRVNK 204
           TPE VF+EEE DLR+V+DSFRV K
Sbjct: 263 TPEKVFLEEEKDLRRVMDSFRVEK 286

Length = 286

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  167 bits (424), Expect = 5e-53
 Identities = 61/179 (34%), Positives = 86/179 (48%), Gaps = 25/179 (13%)

Query: 26  GFREYIDTFDGYSFKYPQNWIQ-VRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVED 84
           GF+ Y+DT DGY F YP  W + V   G D+ + D    DENVSV +S       KS+ED
Sbjct: 9   GFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDKK--KSLED 66

Query: 85  LGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNN 144
           LG P+E G ++LR  L    S R     E+ +L  S R  D G+ YY +E  ++      
Sbjct: 67  LGSPEEVGERLLRGVLAPEGSGR-----EAELLEASEREVD-GKTYYDLEYLVRLADG-- 118

Query: 145 ELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVN 203
                          DR  L+ + V+  +LY L  QT E  + + +    +V+DSF V 
Sbjct: 119 --------------GDRHELATVTVDRGKLYTLAAQTNEKRWFKVKKLFERVVDSFSVA 163

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.94
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	98.17
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	95.09
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	94.32
COG5435	147	Uncharacterized conserved protein [Function unknow	94.1
PRK11615	185	hypothetical protein; Provisional	91.81
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	83.99

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=8.6e-61  Score=412.41  Aligned_cols=202  Identities=77%  Similarity=1.215  Sum_probs=193.0

Q ss_pred             CceeeccceeeccCCCcccccccCcCcceeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCC
Q 028599            1 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK   80 (207)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~a~a~~~~g~~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~   80 (207)
                      |+|++++.++|+.+++ .|||.++ ||+.|.|+.|||+|+||.||+++++.|+||+|||+++.+|||+|+|+|+++.+++
T Consensus        85 ~~l~~~~~~~s~~~~~-~a~a~~~-~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVSV~ISs~sss~~~  162 (286)
T PLN00059         85 MGLLMSGLIVSEANLP-TAFASIP-VFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYT  162 (286)
T ss_pred             HHHHHHHHHHHhhcCc-hhhcCCc-ccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceEEEEecCCcccCC
Confidence            4577899999999995 9999866 7999999999999999999999999999999999999999999999999755689


Q ss_pred             CcccCCCHHHHHHHHHHHhhhhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccc
Q 028599           81 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWD  160 (207)
Q Consensus        81 sl~dlGsp~eva~~l~~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~  160 (207)
                      +|+|||+|++||++|++++++++||||.|++|+++||+|++|++.||++||+|||.+++.+++||||+++.+|+|.++|.
T Consensus       163 sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~  242 (286)
T PLN00059        163 SLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWN  242 (286)
T ss_pred             ChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999986799999999999999999999999999999999999


Q ss_pred             eEEEEEEEEECCEEEEEEeecCcccchHhhHHHHHHhcceeeee
Q 028599          161 RRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK  204 (207)
Q Consensus       161 rH~l~~vtv~~gkLYtl~~~a~e~~W~k~~~~lr~vv~SFrv~~  204 (207)
                      ||+|++++|.+||||||++|+||++|.|+++.|++|++||+|.+
T Consensus       243 RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~~  286 (286)
T PLN00059        243 RRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK  286 (286)
T ss_pred             eeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeecC
Confidence            99999999999999999999999999999999999999999974

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=6.5e-43  Score=288.04  Aligned_cols=158  Identities=44%  Similarity=0.718  Sum_probs=141.2

Q ss_pred             cccCcCcceeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhh
Q 028599           21 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL  100 (207)
Q Consensus        21 a~~~~g~~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~  100 (207)
                      +.++.||++|.|+.++|+|.||++|+++++.|+|++|+||.+..+||+|+|+|++.  ..+|+|||+|++||++|++..+
T Consensus        17 ~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~--~~sl~~lGs~~~va~~l~~~~~   94 (175)
T PF01789_consen   17 AEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPK--DFSLEDLGSPEEVAERLLNGEL   94 (175)
T ss_dssp             TT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-ST--S-SGGGG-SHHHHHHHHHHHCC
T ss_pred             ccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCC--cCchhhcCCHHHHHHHHhhhhc
Confidence            45788999999999999999999999999999999999999999999999999964  4499999999999999999887


Q ss_pred             hhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEee
Q 028599          101 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ  180 (207)
Q Consensus       101 ~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~  180 (207)
                      +++     ++++.++||++.+|+ .+|++||+|||.++.          |+      ++.||+|+++++.+||||+|++|
T Consensus        95 ~~~-----~~~~~a~li~a~~~~-~~g~~yY~~Ey~~~~----------~~------~~~rh~l~~~tv~~g~lY~l~~~  152 (175)
T PF01789_consen   95 ASP-----GSGREAELISASERE-VDGKTYYEYEYTVQS----------PN------EGRRHNLAVVTVKNGKLYTLTAQ  152 (175)
T ss_dssp             CHC-----TSSEEEEEEEEEEEE-ETTEEEEEEEEEEEE----------TT------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred             ccc-----cCCcceEEEEeeeee-cCCccEEEEEEEecc----------CC------CcccEEEEEEEEECCEEEEEEEE
Confidence            773     445889999999999 689999999999987          33      37999999999999999999999


Q ss_pred             cCcccchHhhHHHHHHhcceee
Q 028599          181 TPENVFVEEENDLRQVIDSFRV  202 (207)
Q Consensus       181 a~e~~W~k~~~~lr~vv~SFrv  202 (207)
                      |+|++|+++++.|++|++||+|
T Consensus       153 a~e~~w~k~~~~l~~iv~SF~v  174 (175)
T PF01789_consen  153 APESRWDKVEPKLRKIVDSFRV  174 (175)
T ss_dssp             EEHHHHHTCHHHHHHHHHC-EE
T ss_pred             cCHHHHHHHHHHHHHHHhcEEe
Confidence            9999999999999999999998

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.1e-42  Score=300.51  Aligned_cols=158  Identities=22%  Similarity=0.336  Sum_probs=136.9

Q ss_pred             cCcCcceeeeCCCceEEeccCCceeec---cCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHH----HHHHH
Q 028599           23 QSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRKV   95 (207)
Q Consensus        23 ~~~g~~~~~D~~~gY~f~yP~~W~~~~---~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~e----va~~l   95 (207)
                      ...||.+|.  .|||+|+||.+|++++   .+|+|++|+|+++..+||+|+|+|+.   +++|+|||+|++    |++.|
T Consensus        88 ~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~---k~sI~dlGsPee~l~~vgylL  162 (260)
T PLN00042         88 TNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTD---KKSITDYGSPEEFLSKVSYLL  162 (260)
T ss_pred             CCCCCeEee--CCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCC---cCCHhhcCCHHHHHHHHHHHH
Confidence            378999996  5999999999999665   45999999999999999999999983   589999999999    66667


Q ss_pred             HHHhhhhccccccCCcc------ceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEE
Q 028599           96 LRQYLTEFMSTRLGVRR------ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGV  169 (207)
Q Consensus        96 ~~~~~~~~~str~~~~~------~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv  169 (207)
                      .++.+.+.  |+.+.|+      .++||++++|+ .||++||+|||.++.          |++    ++++||+|+++||
T Consensus       163 ~kq~~a~~--t~s~~Gf~p~~vata~Lleas~re-~dGk~YY~lE~~~~~----------ad~----d~~~RH~LatatV  225 (260)
T PLN00042        163 GKQAYSGE--TASEGGFDANAVATAAVLESSTQE-VGGKPYYYLSVLTRT----------ADG----DEGGKHQLITATV  225 (260)
T ss_pred             HhhhccCc--cccccCcCcccccceeEEEeeeEE-eCCeEEEEEEEEEec----------CCC----CCCCceEEEEEEE
Confidence            77776652  3233343      68999999998 799999999999987          553    4689999999999


Q ss_pred             ECCEEEEEEeecCcccchHh-hHHHHHHhcceee
Q 028599          170 ENNRLYELRLQTPENVFVEE-ENDLRQVIDSFRV  202 (207)
Q Consensus       170 ~~gkLYtl~~~a~e~~W~k~-~~~lr~vv~SFrv  202 (207)
                      .+||||||++|+||+||.|+ ++.|++|++||+|
T Consensus       226 ~~GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        226 SDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             ECCEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence            99999999999999999998 6689999999997

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=1.1e-37  Score=268.85  Aligned_cols=143  Identities=19%  Similarity=0.287  Sum_probs=127.7

Q ss_pred             CCCceEEeccCCceeeccC----C-----------cceEEeCCCCCCCcEEEEEeCCCC---CCCCCcccCCCHHHHHHH
Q 028599           33 TFDGYSFKYPQNWIQVRGA----G-----------ADIFYRDPYVLDENVSVELSSPSS---SRYKSVEDLGPPKEAGRK   94 (207)
Q Consensus        33 ~~~gY~f~yP~~W~~~~~~----G-----------~dv~f~d~~~~~~nvsV~v~p~~~---~~~~sl~dlGsp~eva~~   94 (207)
                      ...||+|+||.+|++++++    |           +|++|+|..  ++||+|+|+|+..   +++++|+|||+|++|+++
T Consensus       103 ~i~gY~FlyP~gW~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~  180 (263)
T PLN00067        103 NVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIAS  180 (263)
T ss_pred             CcccceEeCCCCCcCccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHH
Confidence            3468999999999999986    5           799999954  7899999999842   357899999999999999


Q ss_pred             HHHHhhhhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEE
Q 028599           95 VLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRL  174 (207)
Q Consensus        95 l~~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkL  174 (207)
                      |.+...+.       ++++++||++++|+ .||++||+|||.++.          +       .++||+|+++|+++|+|
T Consensus       181 Lg~~v~g~-------~~~~~eLLeAs~re-~dGktYY~~E~~tp~----------a-------~~gRHnLataTV~~GkL  235 (263)
T PLN00067        181 LGPFVTGN-------SYDPDELLETSVEK-IGDQTYYKYVLETPF----------A-------LTGSHNLAKATAKGNTV  235 (263)
T ss_pred             hhHHhhcC-------CCCCcceEEeeeEe-eCCeEEEEEEEEecC----------C-------CCCceEEEEEEEECCEE
Confidence            98877653       46788999999999 799999999999876          3       37999999999999999


Q ss_pred             EEEEeecCcccchHhhHHHHHHhcceee
Q 028599          175 YELRLQTPENVFVEEENDLRQVIDSFRV  202 (207)
Q Consensus       175 Ytl~~~a~e~~W~k~~~~lr~vv~SFrv  202 (207)
                      |||++|++|+||.|+++.|++|++||+|
T Consensus       236 Ytf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        236 VLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             EEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=2.2e-35  Score=256.42  Aligned_cols=164  Identities=25%  Similarity=0.372  Sum_probs=137.7

Q ss_pred             eeeccCCCcccccc---------------cCcCcceeeeCC-------------CceEEeccCCceeeccC-----Ccce
Q 028599            9 IFSDFGFRNTALAQ---------------QSVGFREYIDTF-------------DGYSFKYPQNWIQVRGA-----GADI   55 (207)
Q Consensus         9 ~~~~~~~~~~a~a~---------------~~~g~~~~~D~~-------------~gY~f~yP~~W~~~~~~-----G~dv   55 (207)
                      ++.++|+|+.++|.               ...||+.|..+.             .+|+|+||.+|+++.++     |+++
T Consensus        59 ~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW~ev~VS~~d~gg~~v  138 (262)
T PLN00066         59 SSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTEI  138 (262)
T ss_pred             hhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCCCeEeecccccCCCCce
Confidence            44456666666632               224577776544             57999999999999997     7777


Q ss_pred             EEeCCCCCCCcEEEEEeCCC-----CCCCCCcccCCCHHHHHHHHHHHhhhhccccccCCccceeEEeceeeeeCCCeEE
Q 028599           56 FYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLY  130 (207)
Q Consensus        56 ~f~d~~~~~~nvsV~v~p~~-----~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~Y  130 (207)
                      .+++..+.++||+|+|+|++     .+++++|+|||+|++|++.|++++++..       .++++|+++++++ .||++|
T Consensus       139 d~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~-------~~e~eLl~a~~re-~dGktY  210 (262)
T PLN00066        139 DLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEP-------VEEGKVLSMEVAE-HSGRTY  210 (262)
T ss_pred             EEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCC-------ccccceeEeeeee-cCCcEE
Confidence            77777778999999999985     1258999999999999999999876652       3688999999988 799999


Q ss_pred             EEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHHHHHHhcceeeee
Q 028599          131 YLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK  204 (207)
Q Consensus       131 Y~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e~~W~k~~~~lr~vv~SFrv~~  204 (207)
                      |+|||   .                     ||+|+++||.+||||||++|+||+||.|+++.|++|++||+|+.
T Consensus       211 Y~~E~---~---------------------rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~~  260 (262)
T PLN00066        211 YQFEL---P---------------------PHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVVT  260 (262)
T ss_pred             EEEEE---e---------------------CceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeeec
Confidence            99999   2                     49999999999999999999999999999999999999999964

>PLN03152 hypothetical protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=194.38  Aligned_cols=137  Identities=23%  Similarity=0.274  Sum_probs=108.3

Q ss_pred             CCceEEeccCCceeeccC----------Cc-------ceEEeCCCCCCCcEEEEEeCCC-----CCCCCCcccCCCHHHH
Q 028599           34 FDGYSFKYPQNWIQVRGA----------GA-------DIFYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEA   91 (207)
Q Consensus        34 ~~gY~f~yP~~W~~~~~~----------G~-------dv~f~d~~~~~~nvsV~v~p~~-----~~~~~sl~dlGsp~ev   91 (207)
                      .+||++-||..+...-.+          |.       .++|..| +..|||||+|+|++     --+.++|.|||+|+||
T Consensus        83 g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EV  161 (241)
T PLN03152         83 GDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEA  161 (241)
T ss_pred             CCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHH
Confidence            689999999987754321          21       3678777 57999999999985     0137999999999999


Q ss_pred             HHHHHHHhhhhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEEC
Q 028599           92 GRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN  171 (207)
Q Consensus        92 a~~l~~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~  171 (207)
                      |+.++     +...++ -+++.+++    +++ .||++||.|||.+                     ..||.|++++|.+
T Consensus       162 gkv~v-----P~g~~~-~saR~iel----~~E-~dGKtYY~lEy~v---------------------~~RH~LaTVaVsr  209 (241)
T PLN03152        162 AKIFV-----PGGATL-YSARTIKV----KEE-EGIRTYYFYEFGR---------------------DEQHVALVATVNS  209 (241)
T ss_pred             HHhhC-----CCcccc-cccceeee----eee-cCCceeEEEEEEe---------------------CCcEEEEEEEEcC
Confidence            97654     310000 02344444    445 7999999999997                     2699999999999


Q ss_pred             CEEEEEEeecCcccchHhhHHHHHHhcceeee
Q 028599          172 NRLYELRLQTPENVFVEEENDLRQVIDSFRVN  203 (207)
Q Consensus       172 gkLYtl~~~a~e~~W~k~~~~lr~vv~SFrv~  203 (207)
                      ||||||+++++|+||+|++++|+++++||.|+
T Consensus       210 GKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        210 GKAYIAGATAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             CeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence            99999999999999999999999999999985

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=98.17  E-value=0.00016  Score=56.28  Aligned_cols=127  Identities=12%  Similarity=0.086  Sum_probs=83.1

Q ss_pred             EEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccccCCccceeEE
Q 028599           38 SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNIL  117 (207)
Q Consensus        38 ~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~~~~a~ll  117 (207)
                      +|..|.+|.....  +-..+.++....-|+.|+-.+++.        =.+.++...+.++..-..        -..-+++
T Consensus         3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l~~--------g~tl~~~~~~q~~~l~~~--------l~~~~~~   64 (130)
T PF08786_consen    3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPLPD--------GETLEDYLQRQLAQLRKQ--------LPGFQLV   64 (130)
T ss_dssp             EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE---T--------TS-HHHHHHHHHHHHHCC--------STT-EEE
T ss_pred             eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccCCC--------CCCHHHHHHHHHHHHHhh--------CCCcEEE
Confidence            5788999998654  223344443334466666556543        135666777766654221        1245566


Q ss_pred             eceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEEC-CEEEEEEeecCcccchHhhHHHHHH
Q 028599          118 STSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN-NRLYELRLQTPENVFVEEENDLRQV  196 (207)
Q Consensus       118 ~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~-gkLYtl~~~a~e~~W~k~~~~lr~v  196 (207)
                      +...-. .+|.+-+.++|.-..          .       ...-|..-++...+ ++|++|+.+++....++.++.++.+
T Consensus        65 ~~~~~~-l~~~~a~~l~~~~~~----------~-------g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i  126 (130)
T PF08786_consen   65 ERQPIT-LGGRPARELEYSFRS----------G-------GQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAI  126 (130)
T ss_dssp             EEEEEE-ETTEEEEEEEEEEEE----------T-------TCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHH
T ss_pred             eeEEEE-eCCCCeEEEEEEEee----------C-------CEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence            654444 689999999998875          2       25678888888887 9999999999999999999999999


Q ss_pred             hcce
Q 028599          197 IDSF  200 (207)
Q Consensus       197 v~SF  200 (207)
                      ++||
T Consensus       127 ~~Sf  130 (130)
T PF08786_consen  127 LKSF  130 (130)
T ss_dssp             HCT-
T ss_pred             HhcC
Confidence            9998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=95.09  E-value=1.5  Score=35.55  Aligned_cols=131  Identities=17%  Similarity=0.334  Sum_probs=63.0

Q ss_pred             ceeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccc
Q 028599           28 REYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTR  107 (207)
Q Consensus        28 ~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str  107 (207)
                      +-|..+..=|++.||.+|.|......-..|.||..=.+|..++.-.  +      ++-    .-|+..+.+.+..     
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk--~------~~~----~ygk~~i~~EL~e-----   64 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYK--G------GSA----QYGKECIRQELKE-----   64 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE----------ST----THHHHHHHHHHHH-----
T ss_pred             CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEe--c------ccc----cchHHHHHHHHHh-----
Confidence            4466666679999999999988433446799999888898666442  1      111    2344455555544     


Q ss_pred             cCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccch
Q 028599          108 LGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFV  187 (207)
Q Consensus       108 ~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e~~W~  187 (207)
                         ++.+.++....     ..--|.-|..-..            +    ..+.-|.  .++-.++..|.+..+.+-.   
T Consensus        65 ---n~~a~~vkvg~-----~~caYs~E~f~ee------------g----~~YtsH~--Wvtg~~~~sfeCSFTv~kg---  115 (153)
T PF12712_consen   65 ---NPSAKLVKVGN-----WECAYSKEMFQEE------------G----AYYTSHL--WVTGEGDVSFECSFTVPKG---  115 (153)
T ss_dssp             ----TT-EEEEETT-----EEEEEEEEEEEET------------T----EEEEEEE--EEEEETTEEEEEEEEEETT---
T ss_pred             ---CCCcceEEecc-----EEEEEEhhhhhcc------------C----eeEEEEE--EEEecCceEEEEEEEccCC---
Confidence               12333443322     1223333333221            0    0112243  3566788899888887654   


Q ss_pred             HhhHHHHHHhcceeeee
Q 028599          188 EEENDLRQVIDSFRVNK  204 (207)
Q Consensus       188 k~~~~lr~vv~SFrv~~  204 (207)
                      ......+.|+.|..|.+
T Consensus       116 ~~~~~aE~iiasL~vR~  132 (153)
T PF12712_consen  116 ESVKEAEEIIASLEVRK  132 (153)
T ss_dssp             ---HHHHHHHHH-EE--
T ss_pred             CCcchHHHHHhhheehh
Confidence            33455677788877753

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=94.32  E-value=1.5  Score=36.64  Aligned_cols=132  Identities=17%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             eEEeccCCceeeccCCc---ceEEeCC-C--CCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccccCC
Q 028599           37 YSFKYPQNWIQVRGAGA---DIFYRDP-Y--VLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGV  110 (207)
Q Consensus        37 Y~f~yP~~W~~~~~~G~---dv~f~d~-~--~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~  110 (207)
                      -++-.|.||........   -....++ .  ...-|+.|+|..+.+       +|- |+++.+.=-.+....        
T Consensus        33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G-------~~D-p~e~l~~a~~d~~~l--------   96 (175)
T PF10738_consen   33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTG-------DFD-PAEALEHAPADAQNL--------   96 (175)
T ss_pred             EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccC-------CCC-HHHHHHhchhhHhhC--------
Confidence            56677899999765432   1222222 2  233588888888753       443 555554311111110        


Q ss_pred             ccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEE--ECC--EEEEEEeecCcccc
Q 028599          111 RRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGV--ENN--RLYELRLQTPENVF  186 (207)
Q Consensus       111 ~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv--~~g--kLYtl~~~a~e~~W  186 (207)
                       ...+-++++.-+ .+|-+=+.+|-.-+.          .+       ..+|......|  .++  +|..|++++.+.+=
T Consensus        97 -~g~~~~~~s~~~-~~GfpS~~i~GtY~~----------~g-------~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa  157 (175)
T PF10738_consen   97 -PGFRELDGSPSD-FSGFPSSQIEGTYDK----------DG-------MRLHTSQRTVVIPGDDQRYLVQLTVTTTADQA  157 (175)
T ss_pred             -cCcccccCCccc-cCCCceeEEEEEEee----------CC-------EEeEeEEEEEEEeCCCcEEEEEEEeeccccch
Confidence             012234443333 688877877733322          11       22333322222  233  67778888999999


Q ss_pred             hHhhHHHHHHhcceeee
Q 028599          187 VEEENDLRQVIDSFRVN  203 (207)
Q Consensus       187 ~k~~~~lr~vv~SFrv~  203 (207)
                      ....+..+.|++.|+|.
T Consensus       158 ~~~~~a~~aI~~g~~It  174 (175)
T PF10738_consen  158 VALADATEAIDEGFTIT  174 (175)
T ss_pred             hhhhhHHHHHHcCCEec
Confidence            99999999999999985

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=94.10  E-value=2.7  Score=34.25  Aligned_cols=132  Identities=18%  Similarity=0.146  Sum_probs=77.1

Q ss_pred             EEeccCCceeeccCCcceEEeCCCCCCCcEEEEEe--CCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccccCCcccee
Q 028599           38 SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELS--SPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESN  115 (207)
Q Consensus        38 ~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~--p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~~~~a~  115 (207)
                      .|..|+.|.-..+.  ...+.++.  ..-++.+|+  |+..       +=..+ +...+.+..+-..     .+   .-+
T Consensus        10 ~l~lP~~w~DrSvN--vf~~~~~g--t~~~sfvIsRd~~~~-------g~~~~-~y~~rql~~l~k~-----Lp---gy~   69 (147)
T COG5435          10 TLELPAAWQDRSVN--VFVSGDNG--TSGFSFVISRDPLEP-------GDTFP-EYVQRQLALLRKQ-----LP---GYE   69 (147)
T ss_pred             eEcCcchhccceEE--EEEecCCC--cceeEEEEecCCCCC-------CCcHH-HHHHHHHHHHHhh-----CC---CeE
Confidence            57889999865541  12233443  344555555  3322       11222 3444433332221     11   123


Q ss_pred             EEeceeeeeCCCeEEEEEEEEeeccccccccccCCccccccccc-ceEEEEEEEEECCEEEEEEeecCcccchHhhHHHH
Q 028599          116 ILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEW-DRRYLSVLGVENNRLYELRLQTPENVFVEEENDLR  194 (207)
Q Consensus       116 ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~-~rH~l~~vtv~~gkLYtl~~~a~e~~W~k~~~~lr  194 (207)
                      +..-.+-. .+|..-...+|.-.+          |.     .++ .-|.+.++.-+++++-+|+++++..-=++.++...
T Consensus        70 ~~~~~e~~-v~~~aa~~~~y~w~~----------~~-----~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~  133 (147)
T COG5435          70 LHHRREIE-VGGAAAPLLDYQWTS----------PE-----GEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWE  133 (147)
T ss_pred             Eeeccccc-cCccccceeEEEeec----------CC-----CCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHH
Confidence            33333222 577777777776654          21     123 34555555556789999999999999999999999


Q ss_pred             HHhcceeeeee
Q 028599          195 QVIDSFRVNKV  205 (207)
Q Consensus       195 ~vv~SFrv~~~  205 (207)
                      ++++||...+-
T Consensus       134 ~~I~Sf~p~~~  144 (147)
T COG5435         134 QVIQSFVPNPP  144 (147)
T ss_pred             HHHHhcCCCCC
Confidence            99999987653

>PRK11615 hypothetical protein; Provisional

Probab=91.81  E-value=7.1  Score=32.90  Aligned_cols=133  Identities=14%  Similarity=0.205  Sum_probs=85.3

Q ss_pred             CCceEEeccCCceeeccC-Cc----ceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhcccccc
Q 028599           34 FDGYSFKYPQNWIQVRGA-GA----DIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL  108 (207)
Q Consensus        34 ~~gY~f~yP~~W~~~~~~-G~----dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~  108 (207)
                      ..+.+|..|.++...... |+    --+|-|+.  ...+-++|.+.     .+-++   .+..+.+|.++-.+.      
T Consensus        47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~t--g~kavIVi~gD-----~~~~~---Ld~la~rl~~qQr~r------  110 (185)
T PRK11615         47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADAT--GQKAVIVILGD-----DTNED---LAVLAKRLEDQQRSR------  110 (185)
T ss_pred             ccEEEEEcCCccccccccccccccceEEEEcCC--CCEEEEEEeCC-----CChhh---HHHHHHHHHHHHHhh------
Confidence            456999999999966543 32    24677753  33443333321     11122   356677777653221      


Q ss_pred             CCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchH
Q 028599          109 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVE  188 (207)
Q Consensus       109 ~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e~~W~k  188 (207)
                        ...-.++.-+.-+ .+|+++..++-.....                 ...--+-++++..++||-||.+..|.+.=.+
T Consensus       111 --dp~lqvvsnK~i~-i~G~~~qQLDS~~t~~-----------------Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqq  170 (185)
T PRK11615        111 --DPQLQVVTNKAIE-LKGHKLQQLDSIISAK-----------------GQTAYSSVVLGKVDNQLLTMQITLPADNQQQ  170 (185)
T ss_pred             --CcCceeecceeEE-ECCeeeEEeeeeeecC-----------------CceEEEEEEEEeeCCeEEEEEEecCCCCHHH
Confidence              1123445444444 6999999999888651                 1233344456777999999999999998888


Q ss_pred             hhHHHHHHhcceee
Q 028599          189 EENDLRQVIDSFRV  202 (207)
Q Consensus       189 ~~~~lr~vv~SFrv  202 (207)
                      ....-+.|+++..+
T Consensus       171 aq~~ae~ii~tl~~  184 (185)
T PRK11615        171 AQTTAENIINTLVI  184 (185)
T ss_pred             HHHHHHHHHhheec
Confidence            88888999888654

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=83.99  E-value=21  Score=32.01  Aligned_cols=105  Identities=19%  Similarity=0.299  Sum_probs=57.3

Q ss_pred             cceeeeCCCceEEeccCCceeeccC----CcceEEeCCCC--------C-CCcEEEEEeCCCCCCCCCcccCCCHHHHHH
Q 028599           27 FREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYV--------L-DENVSVELSSPSSSRYKSVEDLGPPKEAGR   93 (207)
Q Consensus        27 ~~~~~D~~~gY~f~yP~~W~~~~~~----G~dv~f~d~~~--------~-~~nvsV~v~p~~~~~~~sl~dlGsp~eva~   93 (207)
                      -.++.|...||+|.+|.||++.+-.    |..+.-+-..+        . .+.-+|++..+.-+-+.+.+-  +-..+|.
T Consensus       109 ~grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae~--dn~kaa~  186 (297)
T PF07174_consen  109 PGRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAEP--DNTKAAV  186 (297)
T ss_pred             cccccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccccccccccccC--ChHHHHH
Confidence            4678888999999999999987643    44333221111        1 234555666542222222221  3345788


Q ss_pred             HHHHHhhhhccccccC--CccceeEEeceeeeeCCC-eEEEEEEEEe
Q 028599           94 KVLRQYLTEFMSTRLG--VRRESNILSTSSRVADDG-RLYYLVEVNI  137 (207)
Q Consensus        94 ~l~~~~~~~~~str~~--~~~~a~ll~a~~r~~~dG-~~YY~~Ey~~  137 (207)
                      +|..++-.-+|.. +|  .+++..-|++.-   ..| ..||...|.-
T Consensus       187 rl~sdmgeffmp~-pg~rinq~~~~l~~~g---~~g~asyyevkf~d  229 (297)
T PF07174_consen  187 RLASDMGEFFMPY-PGTRINQETTPLDANG---MPGSASYYEVKFTD  229 (297)
T ss_pred             HHhccccceeccC-CCccccccccccccCC---cccceeEEEEEecc
Confidence            8887763334543 22  256666676532   233 4576665544

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		7e-17
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		9e-07

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 21/178 (11%)
Query: 26  GFREYIDTFDGYSFKYPQNWIQVRGAG-ADIFYRDPYVLDENVSVELXXXXXXRYKSVED 84
           G + Y+D++DGY F YP+ W+QV+     D+ + D     ENVSV +        KS+E+
Sbjct: 7   GLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAST--KSLEE 64
Query: 85  LGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNN 144
           LG P+E G ++LR  +    S      R S +++ +S+ ADD + YY++E  +       
Sbjct: 65  LGSPEEVGDRLLRNIIAPSES-----GRSSALIAATSQKADD-KTYYILEYAV------- 111
Query: 145 ELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRV 202
               +P D   N    R  LS + V   ++Y L +  PE  + + E+  + ++ SF V
Sbjct: 112 ---TLPGDG--NTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV 164

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 27  FREYIDTFDGYSFKYPQNWI--QVRGA--GADIFYRDPYVLDENVSVELXXXXXXRYKSV 82
            + Y DT DGY F YP  WI   V+GA  G D+ +RD    DEN+SV +        K++
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD--KTL 71
Query: 83  EDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVE 134
            DLG   + G + ++              R++ +++  +R  +DG++YY +E
Sbjct: 72  TDLGTATDVGYRFMKTVNDASQG-----DRQAELINAEAR-DEDGQVYYTLE 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	1e-36
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	7e-34
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	7e-33
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	2e-32

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score =  124 bits (313), Expect = 1e-36
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 21/183 (11%)

Query: 21  AQQSVGFREYIDTFDGYSFKYPQNWIQVRG-AGADIFYRDPYVLDENVSVELSSPSSSRY 79
           +  + G + Y+D++DGY F YP+ W+QV+     D+ + D     ENVSV +++ +S+  
Sbjct: 2   SSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAST-- 59

Query: 80  KSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS 139
           KS+E+LG P+E G ++LR  +    S R      S +++ +S+ AD  + YY++E  +  
Sbjct: 60  KSLEELGSPEEVGDRLLRNIIAPSESGR-----SSALIAATSQKAD-DKTYYILEYAVTL 113

Query: 140 FANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDS 199
             + N                R  LS + V   ++Y L +  PE  + + E+  + ++ S
Sbjct: 114 PGDGNT------------AQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSS 161

Query: 200 FRV 202
           F V
Sbjct: 162 FTV 164

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  115 bits (289), Expect = 7e-33
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 21  AQQSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSS 77
            +    F+ Y    DG+  + P  W   +     G  + + D +    NV V ++     
Sbjct: 3   PKTDTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDK- 59

Query: 78  RYKSVEDLGPPKEAGRKVLRQYLTEFMS--------TRLGVRRESNILSTSSRVADDGRL 129
             KS+ D G P++   +V      +  S                +N+L TS+     G+ 
Sbjct: 60  --KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVG-GKQ 116

Query: 130 YYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENV-FVE 188
           YY + +  ++   N              E  +  L    V + +LY  + Q  +   F  
Sbjct: 117 YYYLSILTRTADGN--------------EGGKHQLVTATVNDGKLYICKAQAGDKRWFKG 162

Query: 189 EENDLRQVIDSFRV 202
            +  +     SF +
Sbjct: 163 AKKFVENTATSFSL 176

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score =  114 bits (286), Expect = 2e-32
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 28/181 (15%)

Query: 26  GFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKS 81
             + Y DT DGY F YP  WI V       G D+ +RD    DEN+SV +S   S   K+
Sbjct: 13  SLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD--KT 70

Query: 82  VEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFA 141
           + DLG   + G + ++      ++      R++ +++  +R  +DG++YY +E  +    
Sbjct: 71  LTDLGTATDVGYRFMKT-----VNDASQGDRQAELINAEARD-EDGQVYYTLEYRVLVGD 124

Query: 142 NNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFR 201
           N                 +R  L+ +     +L    L T E+ +   ++    V  SF 
Sbjct: 125 N----------------VERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFH 168

Query: 202 V 202
           V
Sbjct: 169 V 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.5
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	97.6

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=5.8e-42  Score=277.95  Aligned_cols=162  Identities=32%  Similarity=0.643  Sum_probs=144.3

Q ss_pred             ccCcCcceeeeCCCceEEeccCCceeeccC-CcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhh
Q 028599           22 QQSVGFREYIDTFDGYSFKYPQNWIQVRGA-GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL  100 (207)
Q Consensus        22 ~~~~g~~~~~D~~~gY~f~yP~~W~~~~~~-G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~  100 (207)
                      ..+.||++|.|+.+||+|.||++|+++.++ |++++|+||.+..+||+|+|+|++.  .++|++||+|++|+++|+++.+
T Consensus         3 ~~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~--~~~l~~~G~~e~va~~l~~~~~   80 (165)
T 2xb3_A            3 SATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAS--TKSLEELGSPEEVGDRLLRNII   80 (165)
T ss_dssp             ---CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSS--CCCSGGGCCHHHHHHHHHHHTT
T ss_pred             CCCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCC--CCChHHcCCHHHHHHHHHHHhh
Confidence            357899999999999999999999999998 9999999999889999999999853  7999999999999999999887


Q ss_pred             hhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEee
Q 028599          101 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ  180 (207)
Q Consensus       101 ~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~  180 (207)
                      ++     +++++.++|+++++|. .+|++||+|||.+++          |+++  +.++.||.|+++++++||||+|++|
T Consensus        81 ~~-----~~~~~~~~l~~a~~r~-~~G~~yY~~Ey~~~~----------~~~~--~~~~~rh~l~~~~v~~g~lY~l~~s  142 (165)
T 2xb3_A           81 AP-----SESGRSSALIAATSQK-ADDKTYYILEYAVTL----------PGDG--NTAQQRHNLSSIAVSRGKVYTLSVS  142 (165)
T ss_dssp             SC-----TTSSCEEEEEEEEEEE-ETTEEEEEEEEEEEC----------C-------CCEEEEEEEEEEETTEEEEEEEE
T ss_pred             cC-----CCCCcceEEEEeeeee-cCCceEEEEEEEEec----------CCCc--cCccccEEEEEEEEECCEEEEEEEe
Confidence            75     4567899999999997 799999999999987          4321  1348999999999999999999999


Q ss_pred             cCcccchHhhHHHHHHhcceeee
Q 028599          181 TPENVFVEEENDLRQVIDSFRVN  203 (207)
Q Consensus       181 a~e~~W~k~~~~lr~vv~SFrv~  203 (207)
                      +||++|+++++.|++|++||+++
T Consensus       143 ape~~w~~~~~~l~~v~~SF~v~  165 (165)
T 2xb3_A          143 APEERWPKVEDQFKTIVSSFTVY  165 (165)
T ss_dssp             EEGGGHHHHHHHHHHHHHTCEEC
T ss_pred             cCHHHhHHHHHHHHHHHhhEEeC
Confidence            99999999999999999999985

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=3e-41  Score=278.57  Aligned_cols=161  Identities=21%  Similarity=0.358  Sum_probs=128.9

Q ss_pred             ccCcCcceeeeCCCceEEeccCCceeecc---CCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHH----HHH
Q 028599           22 QQSVGFREYIDTFDGYSFKYPQNWIQVRG---AGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEA----GRK   94 (207)
Q Consensus        22 ~~~~g~~~~~D~~~gY~f~yP~~W~~~~~---~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~ev----a~~   94 (207)
                      .++.||++|.  .+||+|+||.+|+++++   +|+|++|+|+.+..+||+|+|+|+.   .++|+|||+|+++    +++
T Consensus         4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~---~~si~dlGspe~~~~~v~~~   78 (177)
T 1v2b_A            4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYL   78 (177)
T ss_dssp             ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGG
T ss_pred             CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCC---CCChhHCCCHHHHHHHHHHH
Confidence            3678999997  99999999999998764   4899999999999999999999983   4899999999995    666


Q ss_pred             HHHHhhhhc-ccc---ccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEE
Q 028599           95 VLRQYLTEF-MST---RLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVE  170 (207)
Q Consensus        95 l~~~~~~~~-~st---r~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~  170 (207)
                      |+++++++. ++.   .+++.++++||++++|+ .||++||+|||.+++          |++    .++.||+|+++||+
T Consensus        79 l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~-~~G~~YY~~E~~~~~----------~~g----~e~~rH~l~~~tv~  143 (177)
T 1v2b_A           79 LGRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRT----------ADG----NEGGKHQLVTATVN  143 (177)
T ss_dssp             C------------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-------------------CCEEEEEEEEEE
T ss_pred             HHHHhhcccccccCCcccCcccceEEEEeEEEE-eCCeEEEEEEEEEec----------CCC----CccccEEEEEEEEE
Confidence            677766641 111   12445889999999999 699999999999987          432    35899999999999


Q ss_pred             CCEEEEEEeecCcccchHh-hHHHHHHhcceee
Q 028599          171 NNRLYELRLQTPENVFVEE-ENDLRQVIDSFRV  202 (207)
Q Consensus       171 ~gkLYtl~~~a~e~~W~k~-~~~lr~vv~SFrv  202 (207)
                      +||||+|++||+|+||.+. ++.|++|++||+|
T Consensus       144 ~gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v  176 (177)
T 1v2b_A          144 DGKLYICKAQAGDKRWFKGAKKFVENTATSFSL  176 (177)
T ss_dssp             TTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEE
T ss_pred             CCEEEEEEEecCHHHhhhhHHHHHHHHHhheec
Confidence            9999999999999999995 9999999999998

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=1.5e-42  Score=283.67  Aligned_cols=159  Identities=28%  Similarity=0.487  Sum_probs=146.7

Q ss_pred             cccCcCcceeeeCCCceEEeccCCceeeccC----CcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHH
Q 028599           21 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVL   96 (207)
Q Consensus        21 a~~~~g~~~~~D~~~gY~f~yP~~W~~~~~~----G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~   96 (207)
                      +..+.||++|.|+.+||+|+||++|++++++    |+|++|+||.+..+||+|+|+|++.  .++|+|||+|++|+++|+
T Consensus         8 ~~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~--~~si~d~G~pe~va~~l~   85 (170)
T 2lnj_A            8 GVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPS--DKTLTDLGTATDVGYRFM   85 (170)
Confidence            3468899999999999999999999998887    9999999999999999999999853  699999999999999999


Q ss_pred             HHhhhhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEE
Q 028599           97 RQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYE  176 (207)
Q Consensus        97 ~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYt  176 (207)
                      ++++++     +++++.++||++++|+ .||++||+|||.+++          |+      ++.||.|+++++++||||+
T Consensus        86 ~~~~~~-----~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~----------~~------~~~rh~l~~~~v~~gklY~  143 (170)
T 2lnj_A           86 KTVNDA-----SQGDRQAELINAEARD-EDGQVYYTLEYRVLV----------GD------NVERHDLASVTTNRGKLIT  143 (170)
Confidence            998776     4667899999999997 899999999999987          43      3799999999999999999


Q ss_pred             EEeecCcccchHhhHHHHHHhcceeee
Q 028599          177 LRLQTPENVFVEEENDLRQVIDSFRVN  203 (207)
Q Consensus       177 l~~~a~e~~W~k~~~~lr~vv~SFrv~  203 (207)
                      |++|+||++|.++++.|++|++||+|+
T Consensus       144 l~~~ape~~w~~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A          144 FDLSTAEDRWDTVKSLFDTVASSFHVY  170 (170)
Confidence            999999999999999999999999985

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.50  E-value=1.4e-05  Score=63.05  Aligned_cols=140  Identities=11%  Similarity=0.086  Sum_probs=92.8

Q ss_pred             CcceeeeCCCceEEeccCCceeeccCCcceEEeCCCCCC--CcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhc
Q 028599           26 GFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLD--ENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEF  103 (207)
Q Consensus        26 g~~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~--~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~  103 (207)
                      .+..|.  .+.++|..|.+|....   ..|.+-+.....  -|+.|...+++.  .      .+.++..++-+++.... 
T Consensus         2 ~m~~y~--~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~--~------~~l~~~~~~q~~~l~~~-   67 (148)
T 1tu1_A            2 HMTLYR--LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQG--D------APFADYVARQLENAEKQ-   67 (148)
T ss_dssp             CEEEEE--CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCT--T------SCHHHHHHHHHHHHHHH-
T ss_pred             CCceEE--ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCC--C------CCHHHHHHHHHHHHHhh-
Confidence            355673  8899999999999433   234333322212  466666666532  1      34555555544433222 


Q ss_pred             cccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCc
Q 028599          104 MSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPE  183 (207)
Q Consensus       104 ~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e  183 (207)
                          .   ..-+++...... .+|.+--.+||.-..          .       ...+|..-++.+..+++|.|+.+|+.
T Consensus        68 ----l---~~y~~~~~~~~~-l~g~~a~~~e~~~~~----------~-------g~~~~Q~q~~~~~~~~~l~~t~t~~~  122 (148)
T 1tu1_A           68 ----L---PGFKLHKRWDIN-IHGHAAVLLDYQWQR----------E-------GRDLMLRQVFIERRPAVLITTLTTTP  122 (148)
T ss_dssp             ----S---TTCEEEEEEEEE-ETTEEEEEEEEEEEE----------T-------TEEEEEEEEEECCSSSEEEEEEEECG
T ss_pred             ----C---cCcEEeeeEeEE-EcCCcEEEEEEEEcc----------C-------CEEEEEEEEEEEECCeEEEEEEEcCC
Confidence                1   123344433333 478777778877764          2       36789999998887799999999999


Q ss_pred             ccchHhhHHHHHHhcceeeee
Q 028599          184 NVFVEEENDLRQVIDSFRVNK  204 (207)
Q Consensus       184 ~~W~k~~~~lr~vv~SFrv~~  204 (207)
                      ..|+..++.++.|++||+...
T Consensus       123 ~~~~~~~~~~~~i~~Sf~~~~  143 (148)
T 1tu1_A          123 ADLPHHEPAWKQAMQTLVPRP  143 (148)
T ss_dssp             GGHHHHHHHHHHHHHTCEECC
T ss_pred             CCCHHHHHHHHHHHHhcccCC
Confidence            999999999999999999753

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=97.60  E-value=0.0037  Score=50.33  Aligned_cols=133  Identities=13%  Similarity=0.143  Sum_probs=85.5

Q ss_pred             ceEEeccCCceeeccCCcceEEeCCC---CCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccccCCcc
Q 028599           36 GYSFKYPQNWIQVRGAGADIFYRDPY---VLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRR  112 (207)
Q Consensus        36 gY~f~yP~~W~~~~~~G~dv~f~d~~---~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~~~  112 (207)
                      ++++-.|.||+.....|.-+...+..   .-.-|+-|++.-...       |+  .+ .+.+=+++.++..        .
T Consensus        19 ~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~-------~~--~e-~~r~el~~~~~~l--------p   80 (161)
T 3lyd_A           19 GFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT-------GA--LH-NQRTELDQRATQL--------P   80 (161)
T ss_dssp             EEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT-------TH--HH-HHHHHHHHHHTTS--------T
T ss_pred             eeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc-------HH--HH-HHHHHHHHHHhhC--------C
Confidence            58899999999997766644443322   234588888886632       22  23 3333333333320        1


Q ss_pred             ceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEE--EEEEEE-ECCEEEEE--EeecCcccch
Q 028599          113 ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRY--LSVLGV-ENNRLYEL--RLQTPENVFV  187 (207)
Q Consensus       113 ~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~--l~~vtv-~~gkLYtl--~~~a~e~~W~  187 (207)
                      .-++++-...+ .+|.+-+..||.-..          |.       .+.|.  +..+.+ .++..|.+  +++|.+.+-+
T Consensus        81 ~~~~~~r~~~~-~~G~pa~~iey~y~~----------~~-------~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~  142 (161)
T 3lyd_A           81 DYAERGRTETT-VDGFPAYHIEYAYRH----------HG-------TITIAQMITLVEVSHPHAVDIIQLTATCAGDQTA  142 (161)
T ss_dssp             TCEEEEEEEEE-ETTEEEEEEEEEEEE----------TT-------TEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHH
T ss_pred             CcEeecccccc-cCCcccEEEEEEEec----------CC-------CceEeeEEEEEEEecCCEEEEEEEEEEeccccch
Confidence            22334333333 799999999998643          32       34452  344444 46666666  9999999999


Q ss_pred             HhhHHHHHHhcceeeee
Q 028599          188 EEENDLRQVIDSFRVNK  204 (207)
Q Consensus       188 k~~~~lr~vv~SFrv~~  204 (207)
                      ...+.++.|++|+++.+
T Consensus       143 ~~~~d~q~iv~sl~v~p  159 (161)
T 3lyd_A          143 DYWDTFRLMHADLTVQP  159 (161)
T ss_dssp             HHHHHHHHHHHTCEEET
T ss_pred             HHHHHHHHHhheeEecc
Confidence            99999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	1e-31

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 32/189 (16%)

Query: 26  GFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSV 82
            F+ Y    DG+  + P  W   +     G  + + D +    NV V ++       KS+
Sbjct: 2   DFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSI 56

Query: 83  EDLGPPKEAGRKVLRQYLTEFMS--------TRLGVRRESNILSTSSRVADDGRLYYLVE 134
            D G P++   +V      +  S                +N+L TS+     G+ YY + 
Sbjct: 57  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLS 115

Query: 135 VNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPEN-VFVEEENDL 193
           +  ++   N              E  +  L    V + +LY  + Q  +   F   +  +
Sbjct: 116 ILTRTADGN--------------EGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFV 161

Query: 194 RQVIDSFRV 202
                SF +
Sbjct: 162 ENTATSFSL 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.81

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.2e-40  Score=270.43  Aligned_cols=159  Identities=20%  Similarity=0.349  Sum_probs=129.7

Q ss_pred             cCcceeeeCCCceEEeccCCceeecc---CCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhh
Q 028599           25 VGFREYIDTFDGYSFKYPQNWIQVRG---AGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLT  101 (207)
Q Consensus        25 ~g~~~~~D~~~gY~f~yP~~W~~~~~---~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~  101 (207)
                      .+|++|.|  |||+|+||++|+++..   .|+|++|+||.+..+||+|+|+|+.   +.+|++||+|++++++++..+..
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~---~~sl~~~G~p~~~~~~v~~~l~~   75 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYLLGR   75 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGGC--
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCC---CcchhhccChHHHHHHHHHHHhh
Confidence            36899986  8999999999997754   3899999999999999999999973   78999999999998887554433


Q ss_pred             hcc----c----cccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCE
Q 028599          102 EFM----S----TRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNR  173 (207)
Q Consensus       102 ~~~----s----tr~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gk  173 (207)
                      .++    +    ++.+++++++|+++++|+ .||++||+|||.+++          |.+    .++.||+|++++|.+||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~-~~G~~YY~~Ey~~~~----------~~~----~~~~rh~l~~~~v~~gr  140 (171)
T d1v2ba_          76 QAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRT----------ADG----NEGGKHQLVTATVNDGK  140 (171)
T ss_dssp             ----------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-------------------CCEEEEEEEEEETTE
T ss_pred             hhhcccccccccccccccceeEEEEeeeee-cCCEEEEEEEEEEec----------CCC----CCcccEEEEEEEEeCCE
Confidence            211    1    234557789999999999 799999999999987          443    35899999999999999


Q ss_pred             EEEEEeecCcccchHh-hHHHHHHhcceeee
Q 028599          174 LYELRLQTPENVFVEE-ENDLRQVIDSFRVN  203 (207)
Q Consensus       174 LYtl~~~a~e~~W~k~-~~~lr~vv~SFrv~  203 (207)
                      ||||++||||++|++. ++.|++|++||+|.
T Consensus       141 LYtl~~~~pe~~w~~~~~~~l~~~v~SF~v~  171 (171)
T d1v2ba_         141 LYICKAQAGDKRWFKGAKKFVENTATSFSLA  171 (171)
T ss_dssp             EEEEEEEEEGGGCSTTTTHHHHHHHHTCEEC
T ss_pred             EEEEEEecCHHHhhhhhHHHHHHHHhceEeC
Confidence            9999999999999985 67799999999983

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.81  E-value=1.2e-07  Score=72.44  Aligned_cols=140  Identities=9%  Similarity=0.034  Sum_probs=98.4

Q ss_pred             cceeeeCCCceEEeccCCceeeccCCcceEEeCCCCC-CCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccc
Q 028599           27 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVL-DENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMS  105 (207)
Q Consensus        27 ~~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~-~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~s  105 (207)
                      +..|.  .+.=+|.+|.+|....+  +...+.++... .-||.|+..+++.        =.++++..++.+......   
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t~--ni~~~~~~~~~~~~~lvIsr~~l~~--------~~~l~~~~~~~~~~l~~~---   67 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQSI--NIFKLPASGPAREASFVISRDASQG--------DAPFADYVARQLENAEKQ---   67 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB--EEEEECCBTTBCCEEEEEEEECCCT--------TSCHHHHHHHHHHHHHHH---
T ss_pred             CceeE--EcCEEEeCCCCceeCcc--eEEEecCCCCCcceEEEEEeecCCC--------CCCHHHHHHHHHHHHHhh---
Confidence            44453  44458999999986543  22223333222 2366666666532        246777777776655332   


Q ss_pred             cccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCccc
Q 028599          106 TRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENV  185 (207)
Q Consensus       106 tr~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e~~  185 (207)
                           -..-++++...-. .+|.+-+.+||.-..          +       +...|..-++.+.++++|+|+++++...
T Consensus        68 -----l~~~~~~~~~~~~-l~g~pa~~~~~t~~~----------~-------~~~v~Q~q~~~~~~~~~~~lt~t~~~~~  124 (144)
T d1tu1a_          68 -----LPGFKLHKRWDIN-IHGHAAVLLDYQWQR----------E-------GRDLMLRQVFIERRPAVLITTLTTTPAD  124 (144)
T ss_dssp             -----STTCEEEEEEEEE-ETTEEEEEEEEEEEE----------T-------TEEEEEEEEEECCSSSEEEEEEEECGGG
T ss_pred             -----CCCcEEEeeEecc-cCCCcEEEEEEEEee----------C-------CEeEEEEEEEEEeCCCEEEEEEecCCcC
Confidence                 1234566654444 799999999998875          2       3578999999999999999999999999


Q ss_pred             chHhhHHHHHHhcceeeee
Q 028599          186 FVEEENDLRQVIDSFRVNK  204 (207)
Q Consensus       186 W~k~~~~lr~vv~SFrv~~  204 (207)
                      |+...+.++++++||+..+
T Consensus       125 ~~~~~~~~~~il~Sf~p~p  143 (144)
T d1tu1a_         125 LPHHEPAWKQAMQTLVPRP  143 (144)
T ss_dssp             HHHHHHHHHHHHHTCEECC
T ss_pred             CHHHHHHHHHHHHhCccCC
Confidence            9999999999999999764