Citrus Sinensis ID: 028645

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MMEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Secondary Structure (PSIPRED)
cccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHccccccccEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mmedqeekgnaengigrqkqvKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKvseqdvdsmesqpcftlckwassdngerssgeekslspqlrhrnnsqlseekvstrtgtplilvDQQRQKSLSVFGvlvspklrsAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Flexible Loop (DISEMBL)
mmedqeekgnaengigrqkqVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWassdngerssgeekslspqlrhrnnsqlseekvstrtgtpLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Low Complexity Region (SEG)
MMEDQEEKGNAENGIGRQKQVKDEYLLQFldsldgyltlldslsstlsQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Disordered region (IsUnstruct)
*********************KDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL*************PCFTLCKW****************************************LILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFE***********
Disordered Region (DISOPRED)
***********************EYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARH**********LLDLKVHAAA****************************************************************************SVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFE***********
Disordered Region (DISEMBL)
************NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL************QPCFTLCKWAS**********************************TGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Disordered Region (DISPRO)
*******************QVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWAS***********************************************KSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKEL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q5EAR6	206	Coiled-coil domain-contai	yes	no	0.781	0.781	0.244	3e-08
Q8VE99	180	Coiled-coil domain-contai	yes	no	0.718	0.822	0.291	4e-06
Q96NT0	180	Coiled-coil domain-contai	yes	no	0.674	0.772	0.297	1e-05
Q3SZB5	180	Coiled-coil domain-contai	yes	no	0.718	0.822	0.297	0.0001

>sp|Q5EAR6|CC115_DANRE Coiled-coil domain-containing protein 115 OS=Danio rerio GN=ccdc115 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 19/180 (10%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRING----------ALLD 72
           DE LL F++ L+        L+S + +GW  +A AR++MG  +++           A ++
Sbjct: 10  DEQLLLFMEQLEALEEKRQRLNSLIEEGWFSIAKARYSMGNKQVSALQYASEMQPLAHVE 69

Query: 73  LKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLS 132
             +    T+    E+  +  E Q   T+      D G + +G  + +  + +     +  
Sbjct: 70  TSLLEGGTAEFKCERSENKAEEQKTKTI-----EDIGAKETGLRRRVHTKQKEVKEGEQD 124

Query: 133 EEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLS 192
            ++V T+T +P      + +  L  FG+LV   L+ AQ +F+  +   VEIA+L +T+L+
Sbjct: 125 TDEVKTKTDSP----TPEHRNPLKWFGILVPQNLKQAQSAFKEVITLSVEIASLQSTILA 180

Danio rerio (taxid: 7955)

>sp|Q8VE99|CC115_MOUSE Coiled-coil domain-containing protein 115 OS=Mus musculus GN=Ccdc115 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D   LQ L  L+       +L++ + +GWL LA AR+AMGA  + G L     +A+    
Sbjct: 11  DSKCLQLLSDLEELEAKRAALNARVEEGWLSLAKARYAMGAKSV-GPL----QYASRMEP 65

Query: 83  KVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
           +V  +  ++ +    F + K A +   E     E S    LR R     ++E      G+
Sbjct: 66  QVCVRASEAQDGPQTFRVIK-ADAQTPEEVGPSEAS----LRRRKGPTKTKE-----LGS 115

Query: 143 PLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 190
            ++  D      L+ FG+LV   LR AQ SF   L+   +IA+L T +
Sbjct: 116 AVVPQD-----PLNWFGILVPHSLRQAQASFRDGLQLAADIASLQTRI 158

Mus musculus (taxid: 10090)

>sp|Q96NT0|CC115_HUMAN Coiled-coil domain-containing protein 115 OS=Homo sapiens GN=CCDC115 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 26  LLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVS 85
           LL  L+ L+G  T+L++    + +GWL LA AR+AMGA  + G L     +A+    +V 
Sbjct: 17  LLGDLEELEGKRTVLNA---RVEEGWLSLAKARYAMGAKSV-GPL----QYASHMEPQVC 68

Query: 86  EQDVDSMESQPCFTLCK---WASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
               ++ E    F + +    A  + G R +G        LR R             T T
Sbjct: 69  LHASEAQEGLQKFKVVRAGVHAPEEVGPREAG--------LRRRKGP----------TKT 110

Query: 143 PLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 190
           P     +  Q  L+ FG+LV   LR AQ SF   L+   +IA+L   +
Sbjct: 111 PEPESSEAPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQNRI 158

Homo sapiens (taxid: 9606)

>sp|Q3SZB5|CC115_BOVIN Coiled-coil domain-containing protein 115 OS=Bos taurus GN=CCDC115 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 20/168 (11%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D  LLQ L  L+       +L++ + +GWL L+ AR+AMGA  + G L     +A+    
Sbjct: 11  DFVLLQLLGDLEQLEAKRQALNARVEEGWLSLSKARYAMGAKSV-GPL----QYASHMEP 65

Query: 83  KVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
           +V    V + ESQ    L K+     G ++  E  S    LR R     + E  S+    
Sbjct: 66  QVR---VGTSESQDG--LQKFWMVRAGTQTPEEVGSREAALRRRKGLPRTPEPDSSPAP- 119

Query: 143 PLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 190
                    Q  L  FG+LV   LR AQ SF   L+   ++A+L + +
Sbjct: 120 ---------QNPLKWFGILVPHSLRQAQASFREGLQLAADMASLQSRI 158

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
147852293	225	hypothetical protein VITISV_041592 [Viti	0.980	0.897	0.584	9e-61
225457584	230	PREDICTED: uncharacterized protein LOC10	0.980	0.878	0.571	2e-60
224086062	220	predicted protein [Populus trichocarpa]	0.966	0.904	0.593	6e-55
297850496	215	hypothetical protein ARALYDRAFT_472313 [	0.854	0.818	0.578	2e-48
15218031	215	uncharacterized protein [Arabidopsis tha	0.936	0.897	0.516	4e-47
449455627	245	PREDICTED: uncharacterized protein LOC10	0.868	0.730	0.575	8e-46
255539264	212	conserved hypothetical protein [Ricinus	0.810	0.787	0.551	5e-42
388502112	207	unknown [Lotus japonicus]	0.825	0.821	0.497	5e-41
356572146	162	PREDICTED: coiled-coil domain-containing	0.737	0.938	0.480	6e-39
388517171	199	unknown [Medicago truncatula]	0.893	0.924	0.528	6e-36

>gi|147852293|emb|CAN80128.1| hypothetical protein VITISV_041592 [Vitis vinifera]

 Score =  238 bits (608), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 128/219 (58%), Positives = 163/219 (74%), Gaps = 17/219 (7%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           MEDQ++   +EN +  ++  ++E ++ FLDS+D YLTL+DSLSSTL QGWLELASARH+M
Sbjct: 1   MEDQDKARTSENQLEEEQLDEEENVVTFLDSMDAYLTLIDSLSSTLRQGWLELASARHSM 60

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGE------ 115
           GASRI+ +L DLK+H+AATSL+V+E DVDS  +QP FTLCKWASSDNG+  SGE      
Sbjct: 61  GASRISSSLFDLKLHSAATSLRVTEDDVDSKMNQPHFTLCKWASSDNGKCCSGEAKFDGD 120

Query: 116 ---EKSLSPQLRHRNNSQLSE-----EKVSTRTGTPLIL---VDQQRQKSLSVFGVLVSP 164
              +KS+S QLR+R  SQ  E     EK  T  G+PL L   V +QR KSLSVFG LVSP
Sbjct: 121 ELQKKSVSXQLRYRGTSQXDEPQEIQEKSPTSNGSPLSLDSPVQKQRHKSLSVFGTLVSP 180

Query: 165 KLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELEN 203
           KLR+AQ SFE ALE +VEIAN+ ++MLS F+QV K++E+
Sbjct: 181 KLRAAQFSFETALEXIVEIANMRSSMLSAFDQVQKDIES 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457584|ref|XP_002273059.1| PREDICTED: uncharacterized protein LOC100263247 [Vitis vinifera] gi|297745570|emb|CBI40735.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 162/224 (72%), Gaps = 22/224 (9%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           MEDQ++    EN +  ++  ++E ++ FLDS+D YLTL+DSLSSTL QGWLELASARH+M
Sbjct: 1   MEDQDKARTCENQLEEEQLDEEENVVTFLDSMDAYLTLIDSLSSTLRQGWLELASARHSM 60

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGE------ 115
           GASRI+ +L DLK+H+AATSL+V+E DVDS  +QP FTLCKWASSDNG+  SGE      
Sbjct: 61  GASRISSSLFDLKLHSAATSLRVTEDDVDSKMNQPHFTLCKWASSDNGKCCSGEAKFDGD 120

Query: 116 ---EKSLSPQLRHRNNSQLSEE----------KVSTRTGTPLIL---VDQQRQKSLSVFG 159
              +KS+S QLR+R  SQ  E           K  T  G+PL L   V +QR KSLSVFG
Sbjct: 121 ELQKKSVSSQLRYRGTSQFDEPQEIQEKSPTCKSPTSNGSPLSLDSPVQKQRHKSLSVFG 180

Query: 160 VLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELEN 203
            LVSPKLR+AQ SFE ALET+VEIAN+ ++MLS F+QV K++E+
Sbjct: 181 TLVSPKLRAAQFSFETALETIVEIANMRSSMLSAFDQVQKDIES 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086062|ref|XP_002307800.1| predicted protein [Populus trichocarpa] gi|222857249|gb|EEE94796.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/214 (59%), Positives = 159/214 (74%), Gaps = 15/214 (7%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           ME+QEE    E  I  +K V DE +L+F+DS D YLTLLDSLSSTL QGWL+LA AR +M
Sbjct: 1   MEEQEEATGFE--IEVRKVVGDEDVLRFMDSTDSYLTLLDSLSSTLRQGWLDLAIARQSM 58

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNG-----ERSSGEE 116
           GASRINGALLD K+H+AATS++V ++DVDSME+QP F L KWAS  +G     E+  GE+
Sbjct: 59  GASRINGALLDHKLHSAATSVQVDQEDVDSMEAQPRFILRKWASVADGKQCYEEQKLGED 118

Query: 117 ----KSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQ---QRQKSLSVFGVLVSPKLRSA 169
               KS S QLRHR +SQLSEEK S  +G  L + DQ   +R K LS+FG L+SPKLR+A
Sbjct: 119 KLPGKSGSLQLRHRGDSQLSEEKTS-ESGAQLDVDDQVQKERAKLLSMFGTLISPKLRAA 177

Query: 170 QLSFERALETLVEIANLHTTMLSMFEQVHKELEN 203
           QLSFE ALETLV+IAN+ + MLS +++V KEL++
Sbjct: 178 QLSFETALETLVKIANMRSAMLSSYDRVRKELDH 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850496|ref|XP_002893129.1| hypothetical protein ARALYDRAFT_472313 [Arabidopsis lyrata subsp. lyrata] gi|297338971|gb|EFH69388.1| hypothetical protein ARALYDRAFT_472313 [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 136/190 (71%), Gaps = 14/190 (7%)

Query: 19  KQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAA 78
           K+  DE +LQFLDSLDGYLTL+DSL+S L +GW +LASARH+MG  RIN  LLDLK H A
Sbjct: 26  KEGGDENVLQFLDSLDGYLTLMDSLNSKLREGWFDLASARHSMGTLRINSTLLDLKYHPA 85

Query: 79  ATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGERSSGEEKS-----LSPQLRHRNNSQ 130
           A++L+V++Q+V+S+ S P F L KWAS   S  G+  S +  S     LSPQLRHR    
Sbjct: 86  ASTLQVTDQEVESLGSVPHFALSKWASKGGSGKGKDLSTDTDSEIGSPLSPQLRHRG--- 142

Query: 131 LSEEKVSTRTGTPLIL---VDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLH 187
            SEEK S +  T L+    + ++R KSLSVFG LVSPKLR AQLSFE ALETLVEIAN+ 
Sbjct: 143 FSEEKPSAKDETILVADEEIKKERAKSLSVFGGLVSPKLRGAQLSFETALETLVEIANMR 202

Query: 188 TTMLSMFEQV 197
            +MLS FE++
Sbjct: 203 ASMLSAFERI 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218031|ref|NP_173500.1| uncharacterized protein [Arabidopsis thaliana] gi|8886946|gb|AAF80632.1|AC069251_25 F2D10.26 [Arabidopsis thaliana] gi|38454150|gb|AAR20769.1| At1g20770 [Arabidopsis thaliana] gi|41349930|gb|AAS00350.1| At1g20770 [Arabidopsis thaliana] gi|332191899|gb|AEE30020.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/215 (51%), Positives = 145/215 (67%), Gaps = 22/215 (10%)

Query: 2   MEDQEEKGNAENGIGRQKQVK--------DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLE 53
           M +  E+G+    + ++ +VK        DE +LQFLDSLDGYLTL+DS++S L +GW +
Sbjct: 1   MAEIYEEGDESVDVNKESEVKTELGKGGGDENVLQFLDSLDGYLTLMDSVNSKLREGWFD 60

Query: 54  LASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGE 110
           LASARH+MG  RIN  LLDLK H A+++L+V++QDV+S+ S P F L KWAS   S  G+
Sbjct: 61  LASARHSMGTLRINSTLLDLKYHPASSTLQVTDQDVESLGSVPHFALSKWASKGGSRKGK 120

Query: 111 RSSGEEKS-----LSPQLRHRNNSQLSEEKVSTRTGTPLIL---VDQQRQKSLSVFGVLV 162
             S +  S     LSPQLRHR    +SEEK S +  T L     + ++R KSLSVFG LV
Sbjct: 121 DFSTDTDSEIGSPLSPQLRHRG---VSEEKPSAKDETVLAADEEIKKERAKSLSVFGGLV 177

Query: 163 SPKLRSAQLSFERALETLVEIANLHTTMLSMFEQV 197
           SPKLR AQ SFE ALETLVEIAN+  +M+S FE++
Sbjct: 178 SPKLRGAQQSFETALETLVEIANMRASMISAFERI 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455627|ref|XP_004145554.1| PREDICTED: uncharacterized protein LOC101206061 [Cucumis sativus] gi|449485105|ref|XP_004157071.1| PREDICTED: uncharacterized LOC101206061 [Cucumis sativus]

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 133/193 (68%), Gaps = 14/193 (7%)

Query: 26  LLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVS 85
           LLQFLDS D YL LLD+LS+TL QGW ELASARH+MG SRI+ ALLD+K H+AATSL+V 
Sbjct: 40  LLQFLDSTDDYLNLLDALSATLRQGWFELASARHSMGTSRISTALLDMKNHSAATSLRVD 99

Query: 86  EQDVDSMESQPCFTLCKWASSDNGERSSGEEK--------SLSPQLRHRNNSQLSEE--K 135
           E+D  S+  QP   L KW SS+ G+ S GEEK        S SPQLR RN S LS+   K
Sbjct: 100 ERDDGSVGMQPFINLRKWTSSEGGD-SLGEEKYNDKLQRESGSPQLRQRNVSDLSDNLGK 158

Query: 136 VSTRTGTPLILVDQ---QRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLS 192
            S +    LI+ DQ   +R ++LS FG LVSPKLR AQLSFE ALE +VEIAN    MLS
Sbjct: 159 SSLKKEDALIVDDQVQKERSRTLSTFGTLVSPKLRLAQLSFENALELIVEIANKRIAMLS 218

Query: 193 MFEQVHKELENTN 205
            F++V K  E+T+
Sbjct: 219 SFDEVKKGSEDTS 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539264|ref|XP_002510697.1| conserved hypothetical protein [Ricinus communis] gi|223551398|gb|EEF52884.1| conserved hypothetical protein [Ricinus communis]

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 132/185 (71%), Gaps = 18/185 (9%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D+ +LQFLDS+D YLTL DSLSSTL QGWLELASARH+MGA R+N +LLDLK H A+TSL
Sbjct: 35  DDNVLQFLDSVDSYLTLFDSLSSTLRQGWLELASARHSMGALRLNSSLLDLKSHPASTSL 94

Query: 83  KVSEQDVDSMESQPCFTLCKWAS-SDNGERSSGE---EKSLSPQLRHRNNSQLSEEKVST 138
           ++++      E +P F L KW S  D  E+++ +   EKS +P        QLSEE+ S 
Sbjct: 95  QLTKH----HEGEPQFILRKWLSLGDCDEQNTNDDLLEKSGTP--------QLSEEETSP 142

Query: 139 RTGTPLI--LVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQ 196
           +  +      V ++R +SLSVFG LVSPKLR+AQLSFE ALET+VEIAN+ + MLS F++
Sbjct: 143 KQASSKADDKVQKERSRSLSVFGTLVSPKLRAAQLSFETALETVVEIANMRSAMLSAFDR 202

Query: 197 VHKEL 201
           VH+EL
Sbjct: 203 VHEEL 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502112|gb|AFK39122.1| unknown [Lotus japonicus]

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 131/189 (69%), Gaps = 19/189 (10%)

Query: 21  VKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAAT 80
            +D+  LQF+DS+  YL+L D+LSSTL QGWL+LASARH+MGASRIN +LLDLK H AAT
Sbjct: 31  AEDKLALQFMDSVHNYLSLFDALSSTLGQGWLDLASARHSMGASRINSSLLDLKFHPAAT 90

Query: 81  SLKVSEQDVDSMESQPCFTLCKWASSDNG----ERSSGEEKSLSPQLRHRNN-SQLSEEK 135
           + K+    V     QPCF L KW SS++     E  +G+ +  S ++   NN S L++++
Sbjct: 91  TSKI----VKYQGEQPCFMLRKWVSSEHENSQLEDKNGKLQDSSAEVTAANNLSGLADDE 146

Query: 136 VSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFE 195
                      V ++R KSLSVFG+L+SPKLRS QLSFE+ALETL+E+AN+ ++++  F 
Sbjct: 147 E----------VQKERSKSLSVFGILISPKLRSTQLSFEKALETLIELANMRSSLIHSFH 196

Query: 196 QVHKELENT 204
           Q+H+E E+T
Sbjct: 197 QLHRETEDT 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572146|ref|XP_003554231.1| PREDICTED: coiled-coil domain-containing protein 115 [Glycine max]

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 31/183 (16%)

Query: 30  LDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDV 89
           +DS+D YL+L D++SSTL QGW +LASARH+MGASRIN +LLDLK H+AAT+LK++  D 
Sbjct: 1   MDSMDNYLSLFDAVSSTLRQGWFDLASARHSMGASRINSSLLDLKFHSAATTLKITNYD- 59

Query: 90  DSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPL----- 144
               +QPCF L KW SS++                   +SQL +E V ++ G+ +     
Sbjct: 60  ---GTQPCFMLRKWVSSEH------------------ESSQLEDENVQSQDGSSVKSSGL 98

Query: 145 ---ILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKEL 201
                V  +R KSLS+FGVL+SPKLR++QLSFE+ALETL+EIAN+ +++L  F Q+ + +
Sbjct: 99  VENAEVQNERSKSLSIFGVLISPKLRASQLSFEKALETLIEIANMQSSLLYSFHQL-RRV 157

Query: 202 ENT 204
           E+T
Sbjct: 158 EDT 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517171|gb|AFK46647.1| unknown [Medicago truncatula]

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 136/195 (69%), Gaps = 11/195 (5%)

Query: 13  NGIGRQKQVKDE--YLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGAL 70
           NG   +  +KDE    LQF+DSL  YL+L DSLSSTL QGWLELASAR++MG SR+N +L
Sbjct: 11  NGEEEEVVIKDEDKVALQFMDSLHNYLSLSDSLSSTLRQGWLELASARYSMGTSRVNSSL 70

Query: 71  LDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNG-ERSSGEEKSLSPQLRHRNNS 129
           LDLK H+AAT LK++E +     +QP FTL KW SS++  E +  E K+  PQ    +NS
Sbjct: 71  LDLKFHSAATILKITENEDG---TQPHFTLQKWVSSEHELESTKLEYKNEQPQ---DSNS 124

Query: 130 QLSEEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTT 189
             S E +          V ++R KSLSVFGVL+SPKLR+ QLSFE+ALETL+EIANL ++
Sbjct: 125 IKSSENLMGLADND--EVQKERHKSLSVFGVLISPKLRATQLSFEKALETLIEIANLRSS 182

Query: 190 MLSMFEQVHKELENT 204
           +L  F Q+++E+E+T
Sbjct: 183 LLHSFSQLNQEVEDT 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2030447	215	AT1G20770 "AT1G20770" [Arabido	0.936	0.897	0.451	9.2e-36
ZFIN|ZDB-GENE-050227-20	206	zgc:113121 "zgc:113121" [Danio	0.849	0.849	0.225	3.6e-07

TAIR|locus:2030447 AT1G20770 "AT1G20770" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 97/215 (45%), Positives = 128/215 (59%)

Query:     2 MEDQEEKGNAENGIGRQKQVK--------DEYLLQFXXXXXXXXXXXXXXXXXXXQGWLE 53
             M +  E+G+    + ++ +VK        DE +LQF                   +GW +
Sbjct:     1 MAEIYEEGDESVDVNKESEVKTELGKGGGDENVLQFLDSLDGYLTLMDSVNSKLREGWFD 60

Query:    54 LASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGE 110
             LASARH+MG  RIN  LLDLK H A+++L+V++QDV+S+ S P F L KWAS   S  G+
Sbjct:    61 LASARHSMGTLRINSTLLDLKYHPASSTLQVTDQDVESLGSVPHFALSKWASKGGSRKGK 120

Query:   111 RSSGEEKS-----LSPQLRHRNNSQLSEEKVSTRTGTPLIL---VDQQRQKSLSVFGVLV 162
               S +  S     LSPQLRHR    +SEEK S +  T L     + ++R KSLSVFG LV
Sbjct:   121 DFSTDTDSEIGSPLSPQLRHRG---VSEEKPSAKDETVLAADEEIKKERAKSLSVFGGLV 177

Query:   163 SPKLRSAQLSFERALETLVEIANLHTTMLSMFEQV 197
             SPKLR AQ SFE ALETLVEIAN+  +M+S FE++
Sbjct:   178 SPKLRGAQQSFETALETLVEIANMRASMISAFERI 212

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050227-20 zgc:113121 "zgc:113121" [Danio rerio (taxid:7955)]

 Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 42/186 (22%), Positives = 83/186 (44%)

Query:    23 DEYLLQFXXXXXXXXXXXXXXXXXXXQGWLELASARHAMGASRINGALLDLKVHAAA--- 79
             DE LL F                   +GW  +A AR++MG  +++      ++   A   
Sbjct:    10 DEQLLLFMEQLEALEEKRQRLNSLIEEGWFSIAKARYSMGNKQVSALQYASEMQPLAHVE 69

Query:    80 TSLK---VSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKV 136
             TSL     +E   +  E++      K    D G + +G  + +  + +     +   ++V
Sbjct:    70 TSLLEGGTAEFKCERSENKAEEQKTK-TIEDIGAKETGLRRRVHTKQKEVKEGEQDTDEV 128

Query:   137 STRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQ 196
              T+T +P      + +  L  FG+LV   L+ AQ +F+  +   VEIA+L +T+L+  ++
Sbjct:   129 KTKTDSPT----PEHRNPLKWFGILVPQNLKQAQSAFKEVITLSVEIASLQSTILATRKE 184

Query:   197 VHKELE 202
             +  +++
Sbjct:   185 MQVQMK 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.125   0.340    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      206       187   0.00085  110 3  11 23  0.37    33
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  144 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.76u 0.11s 16.87t   Elapsed:  00:00:01
  Total cpu time:  16.76u 0.11s 16.87t   Elapsed:  00:00:01
  Start:  Sat May 11 05:27:06 2013   End:  Sat May 11 05:27:07 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00051580 hypothetical protein (220 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
PRK00373	204	V-type ATP synthase subunit D; Reviewed	98.15
PF01813	196	ATP-synt_D: ATP synthase subunit D ; InterPro: IPR	98.15
TIGR00309	209	V_ATPase_subD H(+)-transporting ATP synthase, vacu	97.77
COG1394	211	NtpD Archaeal/vacuolar-type H+-ATPase subunit D [E	97.54
KOG1647	255	consensus Vacuolar H+-ATPase V1 sector, subunit D	97.51
PRK02195	201	V-type ATP synthase subunit D; Provisional	97.33

>PRK00373 V-type ATP synthase subunit D; Reviewed

Probab=98.15  E-value=2.1e-05  Score=66.09  Aligned_cols=138  Identities=22%  Similarity=0.372  Sum_probs=92.9

Q ss_pred             cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhH-hhhcceeeeccccC
Q 028645           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVH-AAATSLKVSEQDVD   90 (206)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~-~~~~~v~v~~~~~~   90 (206)
                      .++..-.+..-|.|+.+++.+++++..++..+...+.+.|+.|+.|++.+|...+..    .... .....|.+...-+-
T Consensus        24 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~----~~~~~~~~~~v~~~~~ni~   99 (204)
T PRK00373         24 ERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEE----AAASPKESLEVDVSSKNIM   99 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH----HHhCCCCCceEEEEeEEEE
Confidence            344455566678999999999999999999999999999999999999998654331    0000 10112222211000


Q ss_pred             CCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHH
Q 028645           91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSA  169 (206)
Q Consensus        91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~A  169 (206)
                      + -..|.|...      .                      .                .....+|   ||.+ +|+.+..|
T Consensus       100 G-V~vP~~~~~------~----------------------~----------------~~~~~~~---y~~~~t~~~~d~a  131 (204)
T PRK00373        100 G-VVVPVIELS------V----------------------K----------------RTLPERG---YGFLGTSAELDEA  131 (204)
T ss_pred             E-EEeceEEee------c----------------------c----------------cCCccCC---cCcccCCHHHHHH
Confidence            0 000111110      0                      0                0001122   5665 79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645          170 QLSFERALETLVEIANLHTTMLSMFEQVHKEL  201 (206)
Q Consensus       170 Q~~F~~ale~~velanlq~~i~~~~~~i~~~~  201 (206)
                      -..|..+++.++++|+++..+..+..+|+++.
T Consensus       132 ~~~~~~~l~~li~lA~~e~~~~~L~~ei~kT~  163 (204)
T PRK00373        132 AEKFEELLEKILELAEVEKTIQLLADEIEKTK  163 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999764

>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.15  E-value=1e-05  Score=67.43  Aligned_cols=139  Identities=24%  Similarity=0.381  Sum_probs=87.1

Q ss_pred             cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhH-hhhcceeeeccccC
Q 028645           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVH-AAATSLKVSEQDVD   90 (206)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~-~~~~~v~v~~~~~~   90 (206)
                      .++..-.....|.+..+++.++++|..++..+...+.+.|+.|+.|++.+|...+..    .... .....|.+...-+-
T Consensus        14 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~ni~   89 (196)
T PF01813_consen   14 KRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSS----VAESVPESVEVEVKERNIM   89 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHH----HHTS-S---EEEEEEEEET
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH----HHhcCCCCcEEEEEEEEEE
Confidence            344455566778999999999999999999999999999999999999988654431    1100 00111222211000


Q ss_pred             CCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHH
Q 028645           91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSA  169 (206)
Q Consensus        91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~A  169 (206)
                      + -..|.|...                                              ......|..-+|.+ .|+.+-.|
T Consensus        90 G-V~vP~~~~~----------------------------------------------~~~~~~~~~~y~~~~~~~~~d~a  122 (196)
T PF01813_consen   90 G-VRVPVLEVK----------------------------------------------EVRRPFPSPPYGLLGTPPWLDEA  122 (196)
T ss_dssp             T-EEEEEEEEE------------------------------------------------GGTTS------TT--HHHHHH
T ss_pred             E-EEeceEEee----------------------------------------------ecccccccccCCcccCCHHHHHH
Confidence            0 000111110                                              00011222334444 89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645          170 QLSFERALETLVEIANLHTTMLSMFEQVHKEL  201 (206)
Q Consensus       170 Q~~F~~ale~~velanlq~~i~~~~~~i~~~~  201 (206)
                      ...|..+++.++++|+++..+..+..+|+++.
T Consensus       123 ~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~  154 (196)
T PF01813_consen  123 REKFEELLELLIELAELETALRRLAEEIRKTQ  154 (196)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.

>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D

Probab=97.77  E-value=0.00032  Score=59.26  Aligned_cols=141  Identities=21%  Similarity=0.307  Sum_probs=91.2

Q ss_pred             cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhhcceeeeccccCC
Q 028645           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS   91 (206)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~~~v~v~~~~~~~   91 (206)
                      .++..-.+..-|.|+.+++.+++++..++..+...+.+.|+.|+.|++..|...+..-.  .....+...|.+...-+-+
T Consensus        22 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~v~~~~~~v~~~~~ni~G   99 (209)
T TIGR00309        22 KRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAA--LSVVTARFEVDMKSKNIMG   99 (209)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH--hcCCcccceEEEEEEEEee
Confidence            34444556667899999999999999999999999999999999999998864221100  0000000111111100000


Q ss_pred             CCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHHH
Q 028645           92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQ  170 (206)
Q Consensus        92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ  170 (206)
                       -..|.|+.+.                             .               .....+|  -+|.+ +|+.+-.|-
T Consensus       100 -V~vP~~~~~~-----------------------------~---------------~~~~~~~--~y~l~~t~~~~d~a~  132 (209)
T TIGR00309       100 -VVVPVFDSYE-----------------------------I---------------RRKVHER--GYGLLFTSYKVDEAA  132 (209)
T ss_pred             -EEcceeEeec-----------------------------c---------------ccCcccc--CcCcccCCHHHHHHH
Confidence             0011111100                             0               0000112  25654 899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645          171 LSFERALETLVEIANLHTTMLSMFEQVHKEL  201 (206)
Q Consensus       171 ~~F~~ale~~velanlq~~i~~~~~~i~~~~  201 (206)
                      ..|.++++.++++|+++..+..+..+|+++.
T Consensus       133 ~~~~~~l~~li~lA~~e~~~~~L~~eI~~T~  163 (209)
T TIGR00309       133 EIYEEAVELIVELAEIETTIRLLAEEIEITK  163 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998754

Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.

>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]

Probab=97.54  E-value=0.0016  Score=55.21  Aligned_cols=136  Identities=25%  Similarity=0.315  Sum_probs=94.5

Q ss_pred             cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhhc-ceeeeccccC
Q 028645           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAAT-SLKVSEQDVD   90 (206)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~~-~v~v~~~~~~   90 (206)
                      +++..-.+..-|.|+.++..++++|..++..+.+.+.+.|.+++-|-+.+|...+-      ++..... .+.|+....+
T Consensus        23 ~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve------~~~~~~~~~~~v~~~~~n   96 (211)
T COG1394          23 RRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVE------EIALVQKEKLEVDVDVEN   96 (211)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH------HHHhCCCCCceeeeceee
Confidence            34444455666999999999999999999999999999999999999999876542      1221100 1111110000


Q ss_pred             CC-CCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCccccccccccccccccc-CCCChhHHH
Q 028645           91 SM-ESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFG-VLVSPKLRS  168 (206)
Q Consensus        91 ~~-~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG-~LvP~sLR~  168 (206)
                      =+ -..|.|..                                                .....|..=|| +-+|+.|=.
T Consensus        97 I~GV~vP~~~~------------------------------------------------~~~~~~~~~~~~~~t~~~ld~  128 (211)
T COG1394          97 IMGVVVPTFEL------------------------------------------------VELTPPPYDLGILSTSAWLDE  128 (211)
T ss_pred             eeeeeeeeeee------------------------------------------------eccCCCcccccccCCcHHHHH
Confidence            00 00011110                                                11234555677 339999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645          169 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL  201 (206)
Q Consensus       169 AQ~~F~~ale~~velanlq~~i~~~~~~i~~~~  201 (206)
                      |=..|..+|+.+|++|.++..+.-+..+|+++-
T Consensus       129 a~~~~~elle~li~lae~e~~~~~L~~Ei~~T~  161 (211)
T COG1394         129 AIEKFEELLEKLIELAELETTLRLLLEEIRKTK  161 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998654

>KOG1647 consensus Vacuolar H+-ATPase V1 sector, subunit D [Energy production and conversion]

Probab=97.51  E-value=0.0038  Score=53.19  Aligned_cols=134  Identities=19%  Similarity=0.241  Sum_probs=86.8

Q ss_pred             chhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhh--cceeeeccccCCCCC
Q 028645           17 RQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAA--TSLKVSEQDVDSMES   94 (206)
Q Consensus        17 ~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~--~~v~v~~~~~~~~~~   94 (206)
                      -++-..|.+.++|=+++..|......+...|+..+|.||.|+|.+|+  ++     .+.....  .+|.|-...    +.
T Consensus        32 LLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn--~~-----~~v~q~v~~a~v~vRsk~----en  100 (255)
T KOG1647|consen   32 LLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGN--FK-----HQVQQNVKQATVKVRSKK----EN  100 (255)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--cc-----HHHHhhhhhheeeeeeec----cc
Confidence            34455699999999999999999999999999999999999999884  22     2222211  123332211    11


Q ss_pred             CCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCCCChhHHHHHHHHH
Q 028645           95 QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFE  174 (206)
Q Consensus        95 ~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~LvP~sLR~AQ~~F~  174 (206)
                      ...+.+-......                                        .....-||.-.|- --+++..|...|.
T Consensus       101 v~GV~Lp~fe~~~----------------------------------------dg~~~~~LtgL~r-gGqqv~~~r~~Y~  139 (255)
T KOG1647|consen  101 VSGVKLPTFELYQ----------------------------------------DGIDAFPLTGLGR-GGQQVARLRENYT  139 (255)
T ss_pred             cceeeechhhhhc----------------------------------------ccCcccccccccc-chHHHHHHHHHHH
Confidence            1111111000000                                        0001124432211 3489999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028645          175 RALETLVEIANLHTTMLSMFEQVHKELE  202 (206)
Q Consensus       175 ~ale~~velanlq~~i~~~~~~i~~~~~  202 (206)
                      +||+.+|++|++|.....+-.-|+.++-
T Consensus       140 kAve~LVelasLqtsf~~Lde~ik~TNr  167 (255)
T KOG1647|consen  140 KAVELLVELASLQTSFRTLDEAIKVTNR  167 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999888777775543

>PRK02195 V-type ATP synthase subunit D; Provisional

Probab=97.33  E-value=0.0059  Score=51.41  Aligned_cols=130  Identities=8%  Similarity=0.000  Sum_probs=90.4

Q ss_pred             cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhhcceeeeccccCC
Q 028645           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS   91 (206)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~~~v~v~~~~~~~   91 (206)
                      .++..-.+..-|.|+..++.+++++..++..+...+...|..|+-|+-.+|.....        .. ...|.+...-+=+
T Consensus        23 ~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~~~~--------~~-~~~v~~~~~nimG   93 (201)
T PRK02195         23 ERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFDEDL--------IK-VKKVEKDYENIAG   93 (201)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhc--------CC-cceEEEeeeeEee
Confidence            34444455666889999999999999999999999999999999999888764000        00 0112221100000


Q ss_pred             CCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHHH
Q 028645           92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQ  170 (206)
Q Consensus        92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ  170 (206)
                       -..|.|..                                                  ...+...||.+ +|+.+=.|=
T Consensus        94 -V~vP~~~~--------------------------------------------------~~~~~~~Y~~~~t~~~lD~a~  122 (201)
T PRK02195         94 -VEVPILDS--------------------------------------------------IEFEIIEYSLLNTPIWVDTGI  122 (201)
T ss_pred             -eeeceeee--------------------------------------------------eecCCCCcCCccCCHHHHHHH
Confidence             00011110                                                  00122347777 899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645          171 LSFERALETLVEIANLHTTMLSMFEQVHKEL  201 (206)
Q Consensus       171 ~~F~~ale~~velanlq~~i~~~~~~i~~~~  201 (206)
                      ..|..+++.++++|+++..+..+..+|+++.
T Consensus       123 ~~~~~ll~~~i~lAe~E~~l~~L~~ei~kT~  153 (201)
T PRK02195        123 ELLKELVQLKIEAEVLQERLLLLEEELRKTT  153 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
3aon_A	217	V-type sodium ATPase subunit D; V-ATPase, coiled-c	98.06
3a5c_G	223	V-type ATP synthase subunit D; V-ATPase, asymmetri	97.62

>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=98.06  E-value=2.9e-05  Score=64.77  Aligned_cols=138  Identities=20%  Similarity=0.247  Sum_probs=90.0

Q ss_pred             cccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhh-HhhhcceeeeccccCCC
Q 028645           14 GIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKV-HAAATSLKVSEQDVDSM   92 (206)
Q Consensus        14 ~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y-~~~~~~v~v~~~~~~~~   92 (206)
                      +..=.+..-|.|+.+++++++++..++..+...+...|+.|+.|++.+|...+..    ... ......|.+...-+-+ 
T Consensus        32 G~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~nImG-  106 (217)
T 3aon_A           32 GHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDE----LLALPAENVSISVVEKNIMS-  106 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH----HHTSCSCCCEEEEEEEEETT-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH----HHhCCCCceEEEEEEEEEEE-
Confidence            3333455568899999999999999999999999999999999999988532210    000 0000112221110000 


Q ss_pred             CCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHHHH
Q 028645           93 ESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL  171 (206)
Q Consensus        93 ~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~  171 (206)
                      -..|.|....     .                       .               ......|  -||.+ .|+.+-.|-.
T Consensus       107 V~vP~~~~~~-----~-----------------------~---------------~~~~~~~--~ygl~~t~~~ld~a~~  141 (217)
T 3aon_A          107 VKVPLMNFQY-----D-----------------------E---------------TLNETPL--EYGYLHSNAELDRSID  141 (217)
T ss_dssp             EEEEEEEEEC-----C-----------------------G---------------GGTTSCC--CCCCTTCCHHHHHHHH
T ss_pred             EEeceEEEEe-----c-----------------------c---------------cccCCcC--CcCcccCCHHHHHHHH
Confidence            0011111100     0                       0               0001111  25665 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645          172 SFERALETLVEIANLHTTMLSMFEQVHKEL  201 (206)
Q Consensus       172 ~F~~ale~~velanlq~~i~~~~~~i~~~~  201 (206)
                      .|..+++.+|++|+++..+..+-.+|+++.
T Consensus       142 ~~~~~l~~lvelA~le~~~~~L~~eIkkT~  171 (217)
T 3aon_A          142 GFTQLLPKLLKLAEVEKTCQLMAEEIEKTR  171 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999764

>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*

Probab=97.62  E-value=3.6e-05  Score=64.50  Aligned_cols=133  Identities=17%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             ccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhhcceeeeccccCCCCC
Q 028645           15 IGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMES   94 (206)
Q Consensus        15 ~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~~~v~v~~~~~~~~~~   94 (206)
                      ..=.+..-|.|+.+++++++++..++..+...+...|+.|+.|++.+|...+..-.  ..... ...|.+...      +
T Consensus        25 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~~~~-~~~v~~~~~------n   95 (223)
T 3a5c_G           25 VDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAA--LGVPP-LEGVEAEVE------N   95 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH--hcCCC-CeEEEEEEE------E
Confidence            33345556889999999999999999999999999999999999999965443200  00000 011111100      0


Q ss_pred             CCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHHHHHH
Q 028645           95 QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQLSF  173 (206)
Q Consensus        95 ~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~~F  173 (206)
                                 ..+..         -+.+.            .          ......|   ||.+ +|+.+-.|-..|
T Consensus        96 -----------ImGV~---------vP~~~------------~----------~~~~~~~---ygl~~t~~~ld~a~~~~  130 (223)
T 3a5c_G           96 -----------VWGSK---------VPRLK------------A----------TFPDGAL---LSPVGTPAYTLEASRAF  130 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------EEEEE---------eceEE------------e----------ccCCCCC---cCcccCCHHHHHHHHHH
Confidence                       00000         00000            0          0000012   5665 899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645          174 ERALETLVEIANLHTTMLSMFEQVHKEL  201 (206)
Q Consensus       174 ~~ale~~velanlq~~i~~~~~~i~~~~  201 (206)
                      ..+++.+|++|+++..+..+-.+|+++.
T Consensus       131 ~~~l~~lvelA~le~~~~~L~~eIkkT~  158 (223)
T 3a5c_G          131 RRYAEALIRVANTETRLKKIGEEIKKTT  158 (223)
T ss_dssp             -CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00