Citrus Sinensis ID: 028647

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEccEEEEccEEEEEEEEEcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHHcccccccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHcccccEEEEEccccEcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MPSRRRTLLKVIILgdsgvgktsLMNQYVNKKFSNqykatigadfltkevqfEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYdvnsmksfdNLNNWREEFLiqaspsdpdnfpfvvlgnkidvdggnsrvvSEKKARAWCaskgnipyfetsakeginVEEAFQCIAKNAlksgeeeeiylpdtidvgnssqprssgcec
Flexible Loop (DISEMBL)
mpsrrrtllkviilgdsgvgktSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKarawcaskgnipYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPdtidvgnssqprssgcec
Low Complexity Region (SEG)
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC
Disordered region (IsUnstruct)
******TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK******IYL*******************
Disordered Region (DISOPRED)
***RRRT*LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK***************************SGCEC
Disordered Region (DISEMBL)
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVG************
Disordered Region (DISPRO)
***RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
P31022	206	Ras-related protein Rab7	N/A	no	1.0	1.0	0.951	1e-115
Q9LS94	206	Ras-related protein RABG3	yes	no	1.0	1.0	0.927	1e-112
Q9XI98	206	Ras-related protein RABG3	no	no	1.0	1.0	0.902	1e-108
O24461	207	Ras-related protein Rab7	N/A	no	1.0	0.995	0.903	1e-107
Q40787	206	Ras-related protein Rab7	N/A	no	0.985	0.985	0.912	1e-107
Q9XER8	207	Ras-related protein Rab7	N/A	no	1.0	0.995	0.879	1e-105
Q9C820	206	Ras-related protein RABG3	no	no	1.0	1.0	0.864	1e-103
Q9LW76	206	Ras-related protein RABG3	no	no	1.0	1.0	0.849	1e-103
P93267	207	Ras-related protein Rab7A	N/A	no	1.0	0.995	0.845	1e-102
Q41640	206	Ras-related protein Rab7	N/A	no	1.0	1.0	0.737	1e-87

>sp|P31022|RAB7_PEA Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/206 (95%), Positives = 205/206 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNS+KSFDNLNNWREEFLIQA+PSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+GNKID+DGGNSRVVSEKKARAWCA+KGNIPYFETSAKEGINVEEAFQ IAK+ALKSG
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVGNSSQPRS+GCEC
Sbjct: 181 EEEELYLPDTIDVGNSSQPRSTGCEC 206

Protein transport. Probably involved in vesicular traffic.
Pisum sativum (taxid: 3888)

>sp|Q9LS94|RAG3F_ARATH Ras-related protein RABG3f OS=Arabidopsis thaliana GN=RABG3F PE=2 SV=1

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/206 (92%), Positives = 201/206 (97%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           V++GNK+DVD GNSRVVSEKKA+AWCASKGNIPYFETSAK G NVEEAFQCIAK+ALKSG
Sbjct: 121 VLIGNKVDVDDGNSRVVSEKKAKAWCASKGNIPYFETSAKVGTNVEEAFQCIAKDALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVG S+Q RS+GCEC
Sbjct: 181 EEEELYLPDTIDVGTSNQQRSTGCEC 206

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI98|RAG3E_ARATH Ras-related protein RABG3e OS=Arabidopsis thaliana GN=RABG3E PE=2 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/206 (90%), Positives = 197/206 (95%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNS KSF++LNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+GNKIDVDGG+SRVVSEKKARAWCASKGNIPY+ETSAK G NVE+AF CI  NA+KSG
Sbjct: 121 VVIGNKIDVDGGSSRVVSEKKARAWCASKGNIPYYETSAKVGTNVEDAFLCITTNAMKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVG S+  RS+GCEC
Sbjct: 181 EEEEMYLPDTIDVGTSNPQRSTGCEC 206

Intracellular vesicle trafficking and protein transport. May play a role in adaptation to stress by recylcing macromolecules in specific cellular compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|O24461|RAB7_PRUAR Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1

 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/207 (90%), Positives = 195/207 (94%), Gaps = 1/207 (0%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSF+NLNNWREEFLIQA+PSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNKIDVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NV++AFQCIAKNAL + 
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE 180

Query: 181 EEEEIYLPDTIDV-GNSSQPRSSGCEC 206
            EEEIYLPDTIDV G   Q RSSGCEC
Sbjct: 181 PEEEIYLPDTIDVAGGGRQQRSSGCEC 207

Protein transport. Probably involved in vesicular traffic.

Prunus armeniaca (taxid: 36596)

>sp|Q40787|RAB7_CENCI Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1

 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/206 (91%), Positives = 197/206 (95%), Gaps = 3/206 (1%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           V+LGNK+DVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NVE+AFQCI KNALK+ 
Sbjct: 121 VLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALKNE 180

Query: 181 EEEEIYLPDTIDV--GNSSQPRSSGC 204
            EEE+Y+PDT+DV  GN +Q RSSGC
Sbjct: 181 PEEELYVPDTVDVVGGNRAQ-RSSGC 205

Protein transport. Probably involved in vesicular traffic.

Cenchrus ciliaris (taxid: 35872)

>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/207 (87%), Positives = 196/207 (94%), Gaps = 1/207 (0%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQF+DRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNK+DVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NV+ AF+CIA+NALK+ 
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNE 180

Query: 181 EEEEIYLPDTIDVGNSSQP-RSSGCEC 206
            EEEIYLP+TIDV +  +P RS+GCEC
Sbjct: 181 PEEEIYLPETIDVASGGRPQRSTGCEC 207

Protein transport. Probably involved in vesicular traffic.

Gossypium hirsutum (taxid: 3635)

>sp|Q9C820|RAG3D_ARATH Ras-related protein RABG3d OS=Arabidopsis thaliana GN=RABG3D PE=2 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/206 (86%), Positives = 188/206 (91%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNK DVDGG SRVVSEKKA+AWCASKGNIPYFETSAKEG NV+ AF+CI KNA K+ 
Sbjct: 121 VVLGNKTDVDGGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECITKNAFKNE 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
            EEE YLPDTIDV    Q RS+GCEC
Sbjct: 181 PEEEPYLPDTIDVAGGQQQRSTGCEC 206

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW76|RAG3C_ARATH Ras-related protein RABG3c OS=Arabidopsis thaliana GN=RABG3C PE=2 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/206 (84%), Positives = 192/206 (93%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MASRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV DVN MKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNK DVDGG SRVV+EKKA++WCASKGNIPYFETSAK+G+NV+ AF+CIAKNALK+ 
Sbjct: 121 VVLGNKTDVDGGKSRVVTEKKAKSWCASKGNIPYFETSAKDGVNVDAAFECIAKNALKNE 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
            EEE+YLPDTIDV  + Q RS+GCEC
Sbjct: 181 PEEEVYLPDTIDVAGARQQRSTGCEC 206

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P93267|RAB7_MESCR Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/207 (84%), Positives = 192/207 (92%), Gaps = 1/207 (0%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLK+IILGDSGVGKTSLMNQ+VNKKFSNQYKATIGADFLTKE+QFEDRLFTLQ
Sbjct: 1   MASRRRKLLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVL YDVN MKSF++LN WREEFLIQASP+DPDNFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           V+LGNKIDVDGG+ RVVSEKKA+AWC SKGNIPYFETSAK+G NVEEAFQCIAKNA+++ 
Sbjct: 121 VLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIAKNAIQNE 180

Query: 181 EEEEIYLPDTIDVGNSSQPR-SSGCEC 206
            EEE YLPDTID+  S++P+ SS CEC
Sbjct: 181 PEEETYLPDTIDMAGSTRPQSSSACEC 207

Protein transport. Probably involved in vesicular traffic.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q41640|RAB7_VIGAC Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1

 Score =  322 bits (824), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/206 (73%), Positives = 171/206 (83%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M  RRRTLLKVI+LGD+GVGKTSLMNQYV+KKFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct: 1   MSLRRRTLLKVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVL YDVN MKSFD L+NW EEFL QA+P DP +FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           ++LGNKID+DGGNSRVVSEKKA+ WCASKGNIPYFETSAKE  NV+ AF CIAK AL + 
Sbjct: 121 ILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANE 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
            E++IY     +       + SGC C
Sbjct: 181 HEQDIYFQGIPEAAVPENEQRSGCAC 206

Protein transport. Probably involved in vesicular traffic.

Vigna aconitifolia (taxid: 3918)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
224103431	206	predicted protein [Populus trichocarpa]	1.0	1.0	0.980	1e-116
351726788	206	uncharacterized protein LOC100305642 [Gl	1.0	1.0	0.970	1e-116
224080323	206	predicted protein [Populus trichocarpa]	1.0	1.0	0.970	1e-115
255536817	206	protein with unknown function [Ricinus c	1.0	1.0	0.980	1e-115
356538781	206	PREDICTED: ras-related protein Rab7-like	1.0	1.0	0.966	1e-115
449465391	206	PREDICTED: ras-related protein Rab7-like	1.0	1.0	0.970	1e-115
388507798	206	unknown [Lotus japonicus]	1.0	1.0	0.966	1e-115
408784807	206	small GTP binding protein [Arachis hypog	1.0	1.0	0.956	1e-114
1370186	206	RAB7C [Lotus japonicus]	1.0	1.0	0.961	1e-114
388509354	206	unknown [Lotus japonicus]	1.0	1.0	0.961	1e-114

>gi|224103431|ref|XP_002313053.1| predicted protein [Populus trichocarpa] gi|118485510|gb|ABK94609.1| unknown [Populus trichocarpa] gi|222849461|gb|EEE87008.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/206 (98%), Positives = 205/206 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNK+DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEEIYLPDTIDVG SSQPRS+GCEC
Sbjct: 181 EEEEIYLPDTIDVGTSSQPRSTGCEC 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726788|ref|NP_001238418.1| uncharacterized protein LOC100305642 [Glycine max] gi|255626165|gb|ACU13427.1| unknown [Glycine max]

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/206 (97%), Positives = 206/206 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+GNKID+DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVGNSSQPR++GCEC
Sbjct: 181 EEEELYLPDTIDVGNSSQPRATGCEC 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080323|ref|XP_002306097.1| predicted protein [Populus trichocarpa] gi|118481635|gb|ABK92759.1| unknown [Populus trichocarpa] gi|222849061|gb|EEE86608.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/206 (97%), Positives = 206/206 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD+LNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDHLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNK+DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG+NVEEAFQCIAKNALKSG
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGVNVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEEIYLPDTIDVG+SSQPRS+GCEC
Sbjct: 181 EEEEIYLPDTIDVGSSSQPRSTGCEC 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536817|ref|XP_002509475.1| protein with unknown function [Ricinus communis] gi|223549374|gb|EEF50862.1| protein with unknown function [Ricinus communis]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/206 (98%), Positives = 204/206 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL SG
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALLSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEEIYLPDTIDVG SSQPRS+GCEC
Sbjct: 181 EEEEIYLPDTIDVGTSSQPRSTGCEC 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538781|ref|XP_003537879.1| PREDICTED: ras-related protein Rab7-like isoform 1 [Glycine max] gi|356538783|ref|XP_003537880.1| PREDICTED: ras-related protein Rab7-like isoform 2 [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/206 (96%), Positives = 206/206 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+GNKID+DGGNSRVVSEKKARAWCASKGNIPYFETSAKEG+NVEEAFQCIAKNALKSG
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGLNVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVGNSSQPR++GCEC
Sbjct: 181 EEEELYLPDTIDVGNSSQPRATGCEC 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465391|ref|XP_004150411.1| PREDICTED: ras-related protein Rab7-like [Cucumis sativus] gi|449508065|ref|XP_004163207.1| PREDICTED: ras-related protein Rab7-like [Cucumis sativus] gi|34484308|gb|AAQ72787.1| putative GTP-binding protein [Cucumis sativus]

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/206 (97%), Positives = 206/206 (100%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNK+DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEEIYLPDTIDVG+++QPRSSGC+C
Sbjct: 181 EEEEIYLPDTIDVGSNNQPRSSGCDC 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507798|gb|AFK41965.1| unknown [Lotus japonicus]

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/206 (96%), Positives = 205/206 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+GNKID+DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVGNSSQ R+SGCEC
Sbjct: 181 EEEELYLPDTIDVGNSSQQRASGCEC 206

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|408784807|gb|AFU91386.1| small GTP binding protein [Arachis hypogaea]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/206 (95%), Positives = 204/206 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+GNK+D+DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG
Sbjct: 121 VVIGNKVDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVG SSQ R++GCEC
Sbjct: 181 EEEELYLPDTIDVGTSSQQRATGCEC 206

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370186|emb|CAA98170.1| RAB7C [Lotus japonicus]

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/206 (96%), Positives = 204/206 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRRRTLLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+GNKID+DGGNSRVVSEKKARAWCASKGNIPYFETSAK GINVEEAFQCIAKNALKSG
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKGGINVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVGNSSQ R+SGCEC
Sbjct: 181 EEEELYLPDTIDVGNSSQQRASGCEC 206

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509354|gb|AFK42743.1| unknown [Lotus japonicus]

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/206 (96%), Positives = 204/206 (99%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MPSRR TLLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRGTLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+GNKID+DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
           EEEE+YLPDTIDVGNSSQ R+SGCEC
Sbjct: 181 EEEELYLPDTIDVGNSSQQRASGCEC 206

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2094029	206	RAB7B "RAB GTPase homolog G3F"	1.0	1.0	0.927	9.8e-103
TAIR|locus:2010257	206	RABG3E "RAB GTPase homolog G3E	1.0	1.0	0.902	1.2e-99
TAIR|locus:2018124	206	RABG3d "RAB GTPase homolog G3D	1.0	1.0	0.864	3.3e-95
TAIR|locus:2093437	206	RABG3c "RAB GTPase homolog G3C	1.0	1.0	0.849	1.1e-94
TAIR|locus:2199716	203	RABG3B "RAB GTPase homolog G3B	0.980	0.995	0.729	2.3e-78
DICTYBASE|DDB_G0269236	203	rab7A "Rab GTPase" [Dictyostel	0.980	0.995	0.725	2.7e-77
ZFIN|ZDB-GENE-040704-16	204	zgc:91909 "zgc:91909" [Danio r	0.980	0.990	0.725	2.4e-76
UNIPROTKB|F1MJQ1	207	RAB7A "Ras-related protein Rab	0.985	0.980	0.709	3.1e-76
TAIR|locus:2118500	217	RABG3A "RAB GTPase homolog G3A	1.0	0.949	0.686	6.3e-76
ZFIN|ZDB-GENE-040927-2	205	zgc:100918 "zgc:100918" [Danio	0.980	0.985	0.722	6.3e-76

TAIR|locus:2094029 RAB7B "RAB GTPase homolog G3F" [Arabidopsis thaliana (taxid:3702)]

 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 191/206 (92%), Positives = 201/206 (97%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             V++GNK+DVD GNSRVVSEKKA+AWCASKGNIPYFETSAK G NVEEAFQCIAK+ALKSG
Sbjct:   121 VLIGNKVDVDDGNSRVVSEKKAKAWCASKGNIPYFETSAKVGTNVEEAFQCIAKDALKSG 180

Query:   181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
             EEEE+YLPDTIDVG S+Q RS+GCEC
Sbjct:   181 EEEELYLPDTIDVGTSNQQRSTGCEC 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2010257 RABG3E "RAB GTPase homolog G3E" [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 186/206 (90%), Positives = 197/206 (95%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVNS KSF++LNNWREEFLIQASPSDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             VV+GNKIDVDGG+SRVVSEKKARAWCASKGNIPY+ETSAK G NVE+AF CI  NA+KSG
Sbjct:   121 VVIGNKIDVDGGSSRVVSEKKARAWCASKGNIPYYETSAKVGTNVEDAFLCITTNAMKSG 180

Query:   181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
             EEEE+YLPDTIDVG S+  RS+GCEC
Sbjct:   181 EEEEMYLPDTIDVGTSNPQRSTGCEC 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2018124 RABG3d "RAB GTPase homolog G3D" [Arabidopsis thaliana (taxid:3702)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 178/206 (86%), Positives = 188/206 (91%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SRRR LLKVIILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct:     1 MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             VVLGNK DVDGG SRVVSEKKA+AWCASKGNIPYFETSAKEG NV+ AF+CI KNA K+ 
Sbjct:   121 VVLGNKTDVDGGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECITKNAFKNE 180

Query:   181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
              EEE YLPDTIDV    Q RS+GCEC
Sbjct:   181 PEEEPYLPDTIDVAGGQQQRSTGCEC 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2093437 RABG3c "RAB GTPase homolog G3C" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 175/206 (84%), Positives = 192/206 (93%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SRRR LLKVIILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct:     1 MASRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV DVN MKSF+NLNNWREEFLIQASPSDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             VVLGNK DVDGG SRVV+EKKA++WCASKGNIPYFETSAK+G+NV+ AF+CIAKNALK+ 
Sbjct:   121 VVLGNKTDVDGGKSRVVTEKKAKSWCASKGNIPYFETSAKDGVNVDAAFECIAKNALKNE 180

Query:   181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
              EEE+YLPDTIDV  + Q RS+GCEC
Sbjct:   181 PEEEVYLPDTIDVAGARQQRSTGCEC 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2199716 RABG3B "RAB GTPase homolog G3B" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 151/207 (72%), Positives = 173/207 (83%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M +RRRTLLKVIILGDSGVGKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct:     1 MSTRRRTLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP  FPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             ++LGNK+D+DGGNSRVVSEKKAR WCA KGNI YFETSAKE  NV+++F CI K AL + 
Sbjct:   121 ILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANE 180

Query:   181 EEEEIYL-PDTIDVGNSSQPRSSGCEC 206
              +++IY  PDT   G+  + R  GC C
Sbjct:   181 RDQDIYFQPDT---GSVPEQRG-GCAC 203

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0048102 "autophagic cell death" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=RCA

DICTYBASE|DDB_G0269236 rab7A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 148/204 (72%), Positives = 171/204 (83%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M ++++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE+  +DR+ T+Q
Sbjct:     1 MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVL YDVN  K+F+NL++WR+EFLIQA P DPDNFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             VVLGNKID++  N RVVS+K+A +WC SKGNIPYFETSAKE INVE+AFQ IA+NA+K  
Sbjct:   121 VVLGNKIDLE--NQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLE 178

Query:   181 EEEEIYLPDTIDVGNSSQPRSSGC 204
             +     +P  I V    QP  SGC
Sbjct:   179 DGLVFPIPTNIQVIPEPQPAKSGC 202

GO:0005615 "extracellular space" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0006909 "phagocytosis" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040704-16 zgc:91909 "zgc:91909" [Danio rerio (taxid:7955)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 151/208 (72%), Positives = 172/208 (82%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR++ LLKVIILGDSGVGKTSLMNQYVN KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDV +  +F  L++WR+EFLIQAS SDP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPTTFKTLDSWRDEFLIQASTSDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             VVLGNKID+D   +R VS K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK  
Sbjct:   121 VVLGNKIDLD---NRQVSTKRAQAWCQSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query:   181 EEEEIYLPDTIDVGNSSQPRSSG--CEC 206
               ++   PD I +GN  +P S+G  C C
Sbjct:   178 SVDKYDFPDEIKLGND-RPMSNGEGCSC 204

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1MJQ1 RAB7A "Ras-related protein Rab-7a" [Bos taurus (taxid:9913)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 149/210 (70%), Positives = 174/210 (82%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             VVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK  
Sbjct:   121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query:   181 EEEEIY--LPDTI--DVGNSSQPRSSGCEC 206
              E E+Y   P+ I  D  + ++P + GC C
Sbjct:   178 TEVELYNEFPEPIKLDKNDRTKPSAEGCSC 207

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0007174 "epidermal growth factor catabolic process" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

TAIR|locus:2118500 RABG3A "RAB GTPase homolog G3A" [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 149/217 (68%), Positives = 169/217 (77%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M +RRRTLLKVI+LGDSGVGKTSLMNQYV+KKFS QYKATIGADF+TKE+Q  ++L TLQ
Sbjct:     1 MATRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSMQYKATIGADFVTKELQIGEKLVTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQA---------- 110
             IWDTAGQERFQSLG AFYRGADCC LVYDVN ++SFDNL  W EEFL QA          
Sbjct:    61 IWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLKQAWNIGMWTIAE 120

Query:   111 -SPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
              SPSDP  FPF+VLGNKIDVDGG+SRVVS+KKA  WCAS GNIPYFETSAK+  NV+EAF
Sbjct:   121 ASPSDPKTFPFIVLGNKIDVDGGSSRVVSDKKAADWCASNGNIPYFETSAKDDFNVDEAF 180

Query:   170 QCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 206
               IAK AL +  E++IY     D    ++P+  GC C
Sbjct:   181 LTIAKTALANEHEQDIYFQGIPDAVTENEPKGGGCAC 217

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-040927-2 zgc:100918 "zgc:100918" [Danio rerio (taxid:7955)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 151/209 (72%), Positives = 172/209 (82%)

Query:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
             VVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INV++AFQ IA+NALK  
Sbjct:   121 VVLGNKIDLE---NRQVTTKRAQAWCQSKSNIPYFETSAKEAINVDQAFQTIARNALKQE 177

Query:   181 EEEEIY-LPDTIDVGNSSQPRSSG--CEC 206
              E E Y  PD I +    +P SSG  C C
Sbjct:   178 SEVETYDFPDQIKL-RDDRPVSSGDGCSC 205

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51149	RAB7A_HUMAN	No assigned EC number	0.7019	0.9854	0.9806	yes	no
O04157	RAG3B_ARATH	No assigned EC number	0.7246	0.9805	0.9950	no	no
P93267	RAB7_MESCR	No assigned EC number	0.8454	1.0	0.9951	N/A	no
Q9C2L8	RAB7_NEUCR	No assigned EC number	0.7019	0.9854	0.9902	N/A	no
Q9LW76	RAG3C_ARATH	No assigned EC number	0.8495	1.0	1.0	no	no
O97572	RAB7A_RABIT	No assigned EC number	0.6857	0.9854	0.9806	yes	no
Q43463	RAB7_SOYBN	No assigned EC number	0.7427	1.0	1.0	no	no
Q40787	RAB7_CENCI	No assigned EC number	0.9126	0.9854	0.9854	N/A	no
Q6DUB4	RAB7B_PAROT	No assigned EC number	0.5990	0.9805	0.9805	N/A	no
Q948K8	RAG3A_ARATH	No assigned EC number	0.7233	1.0	1.0	no	no
P09527	RAB7A_RAT	No assigned EC number	0.7019	0.9854	0.9806	yes	no
P32939	YPT7_YEAST	No assigned EC number	0.625	0.8834	0.875	yes	no
Q9XI98	RAG3E_ARATH	No assigned EC number	0.9029	1.0	1.0	no	no
P36411	RAB7A_DICDI	No assigned EC number	0.7254	0.9805	0.9950	yes	no
P51150	RAB7A_MOUSE	No assigned EC number	0.7019	0.9854	0.9806	yes	no
Q9C820	RAG3D_ARATH	No assigned EC number	0.8640	1.0	1.0	no	no
O94655	YPT7_SCHPO	No assigned EC number	0.6456	0.9854	0.9902	yes	no
Q95UJ0	RAB7A_PAROT	No assigned EC number	0.6086	0.9805	0.9805	N/A	no
Q3T0F5	RAB7A_BOVIN	No assigned EC number	0.7	0.9854	0.9806	yes	no
Q41640	RAB7_VIGAC	No assigned EC number	0.7378	1.0	1.0	N/A	no
P36864	YPTV5_VOLCA	No assigned EC number	0.7038	0.9951	1.0	N/A	no
P31022	RAB7_PEA	No assigned EC number	0.9514	1.0	1.0	N/A	no
Q5R9Y4	RAB7A_PONAB	No assigned EC number	0.6952	0.9854	0.9806	yes	no
O24461	RAB7_PRUAR	No assigned EC number	0.9033	1.0	0.9951	N/A	no
P18067	RAB7A_CANFA	No assigned EC number	0.7019	0.9854	0.9806	yes	no
Q9LS94	RAG3F_ARATH	No assigned EC number	0.9271	1.0	1.0	yes	no
Q39573	YPTC5_CHLRE	No assigned EC number	0.7170	0.9902	0.9902	N/A	no
Q9XER8	RAB7_GOSHI	No assigned EC number	0.8792	1.0	0.9951	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IX1851 SubName- Full=Putative uncharacterized protein; (207 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-132
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-89
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-79
pfam00071	162	pfam00071, Ras, Ras family	2e-76
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-70
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-53
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-53
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-52
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-51
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-50
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-50
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-49
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-48
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-46
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-45
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-42
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-41
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-41
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-40
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-40
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-40
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-39
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-39
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	5e-39
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-38
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-37
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-37
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-36
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-36
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-36
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-36
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-35
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-35
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-33
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-33
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	9e-33
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-32
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-32
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-31
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	7e-31
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-31
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	9e-30
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-29
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-29
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	6e-29
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	9e-29
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-28
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-28
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-28
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	5e-27
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	7e-27
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-27
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-26
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-26
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-26
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-26
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-25
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	9e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-24
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-23
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-22
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-20
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-20
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-20
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-18
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-18
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-18
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	6e-18
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-18
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	7e-18
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-17
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-16
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-15
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-15
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-14
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-14
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-14
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	8e-14
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-13
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-13
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	6e-13
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	7e-13
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-12
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	5e-12
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	7e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-09
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-08
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-08
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	3e-07
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-07
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	5e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-06
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-06
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-06
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	5e-06
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	8e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	4e-05
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	5e-05
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	6e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	8e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	8e-05
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	2e-04
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	3e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	3e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	9e-04
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	9e-04
COG1084	346	COG1084, COG1084, Predicted GTPase [General functi	0.001
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	0.001
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.002
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	0.002

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  366 bits (943), Expect = e-132
 Identities = 138/174 (79%), Positives = 155/174 (89%), Gaps = 2/174 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL TLQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RFQSLGVAFYRGADCCVLVYDV + KSF++L++WR+EFLIQASP DP+NFPFVVLGNKID
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           ++    R VS KKA+ WC SKGNIPYFETSAKE INV++AF+ IA+ AL+  +E
Sbjct: 121 LE--EKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  259 bits (664), Expect = 2e-89
 Identities = 82/170 (48%), Positives = 120/170 (70%), Gaps = 7/170 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+I++GDSGVGK+SL++++ + KFS QYK+TIG DF TK ++ + +   LQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  ++YRGA   +LVYD+ + +SF+NL NW +E    ASP    N   +++GNK D
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIMLVGNKSD 116

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           ++    R VS ++A A+ A +  +P+FETSAK   NVEEAF+ +A+  LK
Sbjct: 117 LE--EQRQVSREEAEAF-AEEHGLPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  234 bits (599), Expect = 1e-79
 Identities = 77/166 (46%), Positives = 117/166 (70%), Gaps = 7/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDSGVGKTSL+ ++V+ KFS  YK+TIG DF +K ++ + +   LQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  ++YRGA   +LVYDV + +SF+NL+ W  E    A    P N P +++GNK D
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYA----PPNIPIILVGNKSD 116

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           ++  + R VS ++A+ + A +  + +FETSAK G NV+EAF+ +A+
Sbjct: 117 LE--DERQVSTEEAQQF-AKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  226 bits (579), Expect = 2e-76
 Identities = 77/169 (45%), Positives = 109/169 (64%), Gaps = 7/169 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD GVGK+SL+ ++   KF  +Y  TIG DF TK ++ + +   LQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F++L   +YRGA   +LVYD+ S  SF+N+  W EE L  A     +N P V++GNK D+
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHA----DENVPIVLVGNKCDL 116

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
              + RVVS ++  A     G +P+ ETSAK   NVEEAF+ +A+  LK
Sbjct: 117 --EDQRVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  212 bits (540), Expect = 1e-70
 Identities = 91/166 (54%), Positives = 122/166 (73%), Gaps = 3/166 (1%)

Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +LLKVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    TLQIWDT
Sbjct: 2   KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 121

Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           NKID+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+
Sbjct: 122 NKIDIP---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 164

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  168 bits (427), Expect = 2e-53
 Identities = 71/165 (43%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG+  VGKTSL+ +YV  KF+ ++++T  A F  K V    +   L IWDTAGQER
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + +LG  +YR AD  +LVYD+    SF  +  W +E L Q      +N   V++GNKID+
Sbjct: 62  YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKE-LKQMR---GNNISLVIVGNKIDL 117

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +    RVVS+ +A  +  S G   +FETSAK G  +EE F  +AK
Sbjct: 118 E--RQRVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEELFLSLAK 159

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  167 bits (424), Expect = 5e-53
 Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LGD  VGKTS++ +++   F NQY+ATIG DFL+K +  +D+   LQ+WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+SL  ++ R +   V+VYD+ + +SFDN + W ++   +      ++   V++GNK D+
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG----NDVIIVLVGNKTDL 117

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
              + R VS ++     A + N  + ETSAK G NV++ F+ IA+ 
Sbjct: 118 S--DKRQVSTEEGEKK-AKENNAMFIETSAKAGHNVKQLFKKIAQA 160

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  167 bits (424), Expect = 1e-52
 Identities = 72/204 (35%), Positives = 114/204 (55%), Gaps = 9/204 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQ 67
            KV+++GD GVGKTS++ +YV+  FS  YKATIG DF  K ++++   +  LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN--FPFVVLGN 125
           ERF  +   +Y+GA   ++V+DV    +F+ +  W+ +  + +  + P+    P ++L N
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKAD--LDSKVTLPNGEPIPALLLAN 118

Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS---GEE 182
           K D+         E +   +C   G I +FETSAKE IN+EEA + + KN LK+    + 
Sbjct: 119 KCDLKKERLAKDPE-QMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQS 177

Query: 183 EEIYLPDTIDVGNSSQPRSSGCEC 206
            E    + ID+   +    S   C
Sbjct: 178 PEPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  162 bits (413), Expect = 2e-51
 Identities = 71/171 (41%), Positives = 110/171 (64%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 3   LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   +LVYD+   KSF+N+ NW       AS    ++   +++GNK 
Sbjct: 63  ERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS----EDVERMLVGNKC 118

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D++    RVVS+++  A  A +  I + ETSAK  INVEEAF  +AK+ LK
Sbjct: 119 DME--EKRVVSKEEGEA-LAREYGIKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  160 bits (408), Expect = 1e-50
 Identities = 67/165 (40%), Positives = 102/165 (61%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGDS VGK+S++ ++V  +FS   ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           ++SL   +YRGA   ++VYD+ S +SF+   +W +E      P    N    + GNK D+
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +  + R VS ++A+ +    G + + ETSAK G NV E F  IA+
Sbjct: 119 E--SKRQVSTEEAQEYADENGLL-FMETSAKTGENVNELFTEIAR 160

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  159 bits (405), Expect = 4e-50
 Identities = 64/168 (38%), Positives = 107/168 (63%), Gaps = 7/168 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 3   LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +F+N+  W +E    A      N   +++GNK 
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHA----DSNIVIMLVGNKS 118

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           D+   + R V  ++A+A+ A K  + + ETSA +G NVEEAF+ +   
Sbjct: 119 DL--RHLRAVPTEEAKAF-AEKNGLSFIETSALDGTNVEEAFKQLLTE 163

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  157 bits (399), Expect = 3e-49
 Identities = 66/165 (40%), Positives = 103/165 (62%), Gaps = 7/165 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GDSGVGK+SL+ ++ +  F     +TIG DF  K V  + +   L IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L  ++YRGA   +LVYDV    +FDNL+ W  E     + S   +   +++GNKID
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNEL---DTYSTNPDAVKMLVGNKID 117

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
            +   +R V+ ++ + + A K N+ + ETSAK  I V++AF+ + 
Sbjct: 118 KE---NREVTREEGQKF-ARKHNMLFIETSAKTRIGVQQAFEELV 158

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  155 bits (394), Expect = 2e-48
 Identities = 67/172 (38%), Positives = 109/172 (63%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 2   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 62  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 117

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           D+   + +VV   +A+ + A +  IP+ ETSAK   NVEEAF  +A+   K 
Sbjct: 118 DLT--DKKVVDYTEAKEF-ADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  149 bits (379), Expect = 3e-46
 Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  ++V+ +F  +Y  TI  D   K++  +   +TL I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  D  +LVY + S +SF+ + N RE+ L      D ++ P V++GNK D+
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV---KDKEDVPIVLVGNKCDL 116

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           +  N R VS ++  A  A +   P+ ETSAK  IN++E F  + +  
Sbjct: 117 E--NERQVSTEEGEAL-AEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  148 bits (375), Expect = 2e-45
 Identities = 73/175 (41%), Positives = 106/175 (60%), Gaps = 16/175 (9%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL----------F 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 4   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRV 63

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD 
Sbjct: 64  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPD- 122

Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
              V++GNK D+   + R VSE++AR      G IPYFETSA  G NVE+A + +
Sbjct: 123 --IVLIGNKADLP--DQREVSERQARELADKYG-IPYFETSAATGQNVEKAVETL 172

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  140 bits (354), Expect = 2e-42
 Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + +  + +   LQIWDTAGQ
Sbjct: 4   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    ++     N   +++GNK 
Sbjct: 64  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS----NMTIMLIGNKC 119

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D++  + R VS ++  A+ A +  + + ETSAK   NVEEAF   AK
Sbjct: 120 DLE--SRREVSYEEGEAF-AREHGLIFMETSAKTASNVEEAFINTAK 163

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  137 bits (347), Expect = 4e-41
 Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 8/170 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQ
Sbjct: 6   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++   +YRG    ++VYDV + +SF N+  W +E  I+    + D+   V++GNK 
Sbjct: 66  ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQE--IEQ---NCDDVCKVLVGNK- 119

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
             D    +VV  + A  +      I  FETSAKE INVEE F CI +  L
Sbjct: 120 -NDDPERKVVETEDAYKFAGQM-GISLFETSAKENINVEEMFNCITELVL 167

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  138 bits (348), Expect = 5e-41
 Identities = 78/209 (37%), Positives = 122/209 (58%), Gaps = 19/209 (9%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQ
Sbjct: 12  LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK 
Sbjct: 72  ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKS 127

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC--------IAKNALKS 179
           D++  + R V+E+  +A  A K  + + ETSA E  NVE+AFQ         I+K AL +
Sbjct: 128 DLN--HLRSVAEEDGQAL-AEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAA 184

Query: 180 GEEE-EIYLPD---TIDVGNSSQPRSSGC 204
            E      LP    TI+V ++S     GC
Sbjct: 185 QEAAANSGLPGQGTTINVADTSGNNKRGC 213

Length = 216

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  135 bits (342), Expect = 1e-40
 Identities = 64/161 (39%), Positives = 98/161 (60%), Gaps = 7/161 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K +I+G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  ++YRGA   +LVYD+ S +SF+ L NW  +    ASP    +   +++GNK D
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP----DIVIILVGNKKD 116

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           ++  + R V+  +A  + A +  + + ETSA  G NVEEAF
Sbjct: 117 LE--DDREVTFLEASRF-AQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  135 bits (342), Expect = 1e-40
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 4/163 (2%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KVI +G+SGVGK+ ++ +Y   +F ++Y  TIG D+  K+V   ++   +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQ-ASPSDPDNFPFVVLGNKI 127
            +  +   FY+     +LVYDV   +SF+ L++W +E   +     + +N   VV  NKI
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           D+     R VSE + R W  SKG   YFETSA  G  V E FQ
Sbjct: 121 DL--TKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNEMFQ 160

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  136 bits (343), Expect = 4e-40
 Identities = 67/191 (35%), Positives = 96/191 (50%), Gaps = 19/191 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LGD GVGKT+L+N+ V  +F   Y  TIG     K ++   R   LQ+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127
            ++SL   +YRGA+  ++VYD    +S D L   W EE    A    PD+ P +++GNKI
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA----PDDVPILLVGNKI 121

Query: 128 DVDG------------GNSRVVSEKKARAWCASKGNIPYFETSAK--EGINVEEAFQCIA 173
           D+                  V+     +A      N    ETSAK   G NV E F+ + 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 174 KNALKSGEEEE 184
           +  L+  E+  
Sbjct: 182 RKLLEEIEKLV 192

Length = 219

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  132 bits (334), Expect = 2e-39
 Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 10/167 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAG 66
           +KVI++G+  VGK+S++ ++V   F+  YK TIG DFL K++          L +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE F ++  A+YRGA  C+LV+     +SF+ + +W+E        ++  + P V++  K
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKE-----KVEAECGDIPMVLVQTK 115

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           ID+   +  V++ ++A A  A +  +P F TS K+  NV E F+ +A
Sbjct: 116 IDL--LDQAVITNEEAEA-LAKRLQLPLFRTSVKDDFNVTELFEYLA 159

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  131 bits (332), Expect = 4e-39
 Identities = 62/167 (37%), Positives = 98/167 (58%), Gaps = 6/167 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K+I++GDS VGKT ++ ++ +  FS +   TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 3   LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YR A+  ++ YD+    SF+++ +W EE     +     N   +++GNK 
Sbjct: 63  ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS----NVVLLLIGNKC 118

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D++    R V  ++A       G +   ETSAKE  NVEEAF  +A 
Sbjct: 119 DLE--EQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMAT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  132 bits (333), Expect = 5e-39
 Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 24/204 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           KV+++GDSGVGKT L+ ++ +  F +  + AT+G  F  K V  +     LQIWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  A+YR A   +L+YDV +  SFDN+  W  E L  A      +   ++LGNK D
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ----SDVVIMLLGNKAD 117

Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN----ALKSG 180
           + G   RVV     E+ A+ +      +P+ ETSAK G+NVE AF  +AK     +++  
Sbjct: 118 MSG--ERVVKREDGERLAKEY-----GVPFMETSAKTGLNVELAFTAVAKELKHRSVEQP 170

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGC 204
           +E +  + D ++     Q +SSGC
Sbjct: 171 DEPKFKIQDYVE----KQKKSSGC 190

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  130 bits (328), Expect = 1e-38
 Identities = 62/167 (37%), Positives = 105/167 (62%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 2   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +     + ++P+   F++ GNK 
Sbjct: 62  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD---ARNLTNPNTVIFLI-GNKA 117

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D++    R V+ ++A+ + A +  + + E SAK G NVE+AF   AK
Sbjct: 118 DLEA--QRDVTYEEAKQF-ADENGLLFLECSAKTGENVEDAFLETAK 161

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  127 bits (322), Expect = 5e-37
 Identities = 64/193 (33%), Positives = 114/193 (59%), Gaps = 7/193 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT-LQIWDTAGQE 68
           ++I++GDS VGK+SL+ ++   +F+     T+G DF ++ ++ E  +   LQ+WDTAGQE
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+  ++YR +   +LV+D+ + +SF+++++W EE      P  P    F+++G+K D
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP---VFILVGHKCD 120

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           ++  + R V+ ++A       G + Y ETSA+ G NVEEAF+ + +   +  +  E+   
Sbjct: 121 LE--SQRQVTREEAEKLAKDLG-MKYIETSARTGDNVEEAFELLTQEIYERIKRGELCAL 177

Query: 189 DTIDVGNSSQPRS 201
           D  D   S  P  
Sbjct: 178 DGWDGVKSGFPAG 190

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  126 bits (319), Expect = 5e-37
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 7/161 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q++   F + Y  TI  D   K+++ +  +  L I DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  +  +LVY +   +SF+ +  +RE+ L      D D+ P V++GNK D+
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQIL---RVKDRDDVPIVLVGNKCDL 117

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +  + RVVS ++ +   A +   P+ ETSAKE +NV+EAF 
Sbjct: 118 E--SERVVSTEEGKE-LARQWGCPFLETSAKERVNVDEAFY 155

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  125 bits (315), Expect = 1e-36
 Identities = 63/163 (38%), Positives = 102/163 (62%), Gaps = 7/163 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F++ + +T+G DF  K V   D+   LQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W      Q      DN   +++GNK 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----STQIKTYSWDNAQVILVGNKC 116

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           D++  + RVVS ++ R      G   +FE SAKE INV++ F+
Sbjct: 117 DME--DERVVSAERGRQLADQLG-FEFFEASAKENINVKQVFE 156

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  125 bits (316), Expect = 1e-36
 Identities = 67/174 (38%), Positives = 100/174 (57%), Gaps = 11/174 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+I++GDS VGKT L  ++   +F  + +ATIG DF  + V+ +     +Q+WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 70  F-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           F +S+   +YR     V VYDV +M SF +L +W EE    + P++    P +++GNK D
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE---VPRILVGNKCD 120

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIAKNALKS 179
           +       V    A+ + A   ++P FETSAK   E  +VE  F  +A + LKS
Sbjct: 121 L--REQIQVPTDLAQRF-ADAHSMPLFETSAKDPSENDHVEAIFMTLA-HKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  126 bits (318), Expect = 2e-36
 Identities = 71/199 (35%), Positives = 113/199 (56%), Gaps = 10/199 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + +  +++   LQIWDTAGQ
Sbjct: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A+     N   +++GNK 
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D+   + R VS ++   +    G I + E SAK   NVEEAF   A    K  ++    +
Sbjct: 122 DL--AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDV 178

Query: 188 PDT---IDVGNSSQPRSSG 203
            +    I VG  + P +SG
Sbjct: 179 SNESYGIKVGYGAIPGASG 197

Length = 210

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  124 bits (314), Expect = 3e-36
 Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 7/161 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+++ +  +  L I DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  +  +LVY +   +SF+ +  +RE+ L      D D+ P V++GNK D+
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQIL---RVKDRDDVPIVLVGNKCDL 119

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +  N RVVS ++ +   A +   P+ ETSAKE INV+EAF 
Sbjct: 120 E--NERVVSTEEGKE-LARQWGCPFLETSAKERINVDEAFY 157

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  122 bits (308), Expect = 2e-35
 Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 7/166 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+ +     LQIWDTAGQ
Sbjct: 7   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    A+    +    +++GNKI
Sbjct: 67  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN----NKVITILVGNKI 122

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     R VS+++A  + +   ++ Y ETSAKE  NVE+ F  +A
Sbjct: 123 DL--AERREVSQQRAEEF-SDAQDMYYLETSAKESDNVEKLFLDLA 165

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  121 bits (304), Expect = 4e-35
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 18/170 (10%)

Query: 13  ILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++G  GVGK+SL+N  +  +    S+    T   D   KE+        L + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKV--KLVLVDTPGLDE 59

Query: 70  FQSLGVA-----FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           F  LG         RGAD  +LV D    +S ++        L +      +  P +++G
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK------EGIPIILVG 113

Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           NKID+     R V E       A    +P FE SAK G  V+E F+ + +
Sbjct: 114 NKIDLL--EEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  116 bits (293), Expect = 2e-33
 Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 7/161 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++G  GVGK++L  Q++   F   Y  TI  D  TK+ + + +   L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI-EDSYTKQCEIDGQWARLDILDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            F ++   + R  +  +LV+ V    SF+ ++ +  + L      D D FP +++GNK D
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQIL---RVKDRDEFPMILVGNKAD 118

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           ++  + R VS ++ +   A +  IPY ETSAK+ +NV++AF
Sbjct: 119 LE--HQRQVSREEGQEL-ARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  116 bits (292), Expect = 4e-33
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 8/161 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            + ++   + R  +  + V+ +NS KSF++++ +RE+        D D+ P V++GNK D
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK---RVKDSDDVPMVLVGNKCD 117

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           +    +R VS ++ +    S G IPY ETSAK    VEEAF
Sbjct: 118 LA---ARTVSTRQGQDLAKSYG-IPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  115 bits (289), Expect = 9e-33
 Identities = 61/170 (35%), Positives = 94/170 (55%), Gaps = 11/170 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+I+LGDS VGK+ L+ +++   +  Q  +T          +FE +   +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RFQ++  ++Y  A  C+LV+DV    ++ NL+ W EE L +  P      P +V+ NKID
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEE-LREYRPE----IPCIVVANKID 115

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +D      V++KK     A K N+P +  SA +G NV + FQ   K A+ 
Sbjct: 116 LDPS----VTQKKFNF--AEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  116 bits (291), Expect = 1e-32
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQE
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF S+  A+YR A   +LVYD+   ++FD+L  W +     AS    ++   +++GNK+D
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 116

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
            +    R ++ ++   +      + + E SAK+  NV+E F  +  + LK
Sbjct: 117 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  113 bits (286), Expect = 4e-32
 Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 24/172 (13%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTK--EVQFEDRLFTLQIW 62
           K++++GD G GKT+ + +++  +F  +Y AT+G      DF T   +++F        +W
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFN-------VW 54

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           DTAGQE+F  L   +Y    C ++++DV S  ++ N+ NW  + +        +N P V+
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVL 109

Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            GNK+D+     R V  K+       K N+ Y+E SAK   N E+ F  +A+
Sbjct: 110 CGNKVDIKD---RKVKPKQITF--HRKKNLQYYEISAKSNYNFEKPFLWLAR 156

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  111 bits (280), Expect = 4e-31
 Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 16/202 (7%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +KV++LG   VGKTSL+ +YV+ +F    Y+ TIGA F+ K +   +R+ TL IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++   +YRGA   ++ YD+    SF+    W +E L         +    + G K 
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKE-LQNLEE----HCKIYLCGTKS 115

Query: 128 DV--DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK---SGEE 182
           D+     + R V     + + A +    +FETS+K G NV+E FQ +A++ +    +   
Sbjct: 116 DLIEQDRSLRQVDFHDVQDF-ADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMN 174

Query: 183 EEIYLPDTIDVGNSSQPRSSGC 204
            E      +D+G         C
Sbjct: 175 TE----KGVDLGQKKNSYFYSC 192

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  110 bits (277), Expect = 7e-31
 Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 6/161 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F   Y  TI  D   K+V+ + R   L+I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTI-EDSYRKQVEIDGRQCDLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +     +LVY V S  S + L   RE+ L      D DN P V++GNK D+
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVL---RIKDSDNVPMVLVGNKADL 118

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +  + R VS +   +     GN+P++ETSA++  NV+E F 
Sbjct: 119 E--DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFI 157

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  111 bits (280), Expect = 9e-31
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
           +K+++LGD   GKTSL+ ++  + F   YK TIG DF ++ +     L  TLQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GNK 126
           +    +   +  GA    LVYD+ + +SF+NL +W    +++    + +  P +VL GNK
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLS--VVKKVNEESETKPKMVLVGNK 118

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
            D++  ++R V+ +K   +         F  SAK G  V   FQ IA
Sbjct: 119 TDLE--HNRQVTAEKHARFAQENDMESIF-VSAKTGDRVFLCFQRIA 162

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  108 bits (271), Expect = 9e-30
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 16/176 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++GD  VGKT L+  Y   KF  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQE 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  +L + V+S  SF+N+   W  E +    P    N P +++G KI
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPE-IKHYCP----NVPIILVGTKI 114

Query: 128 DV-DGGNSRVVSEKKARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAK 174
           D+ D GN+    EKK +     +G         + Y E SA     ++E F    +
Sbjct: 115 DLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  106 bits (267), Expect = 2e-29
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 4/171 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVI++GD  VGKT L+N++    F   YKATIG DF  +  +     F+LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+ +   +YRGA   ++V+D+  + S ++   W E+ L +  PS      F+V G K D+
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSV--LLFLV-GTKKDL 118

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
                  + E+ A    A +    Y+  SA  G NV + F  +A    + G
Sbjct: 119 SSPAQYALMEQDA-IKLAREMKAEYWAVSALTGENVRDFFFRVASLTFELG 168

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  106 bits (265), Expect = 4e-29
 Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 6/160 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+++ + +   L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI-EDSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + + +SF++L + RE+ L      D ++ P +++GNK D+
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 118

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           +  + RVVS+++ +      GN P+ ETSAK  INV+E F
Sbjct: 119 E--DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  107 bits (268), Expect = 6e-29
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 39/228 (17%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV++LGD  VGKTSL+++Y+ ++F     +T+G  F  K+       + + IWDTAG+E
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQW----GPYNISIWDTAGRE 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  LG  + RGA   +L YDV++++S + L    E+  +  + +  ++  F V+GNK+D
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEEL----EDRFLGLTDTANEDCLFAVVGNKLD 111

Query: 129 VDGGNSRVVSEKKARAWCASK------------------------------GNIPYFETS 158
           +    +    EK A    + +                                   FETS
Sbjct: 112 LTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETS 171

Query: 159 AKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 206
           AK G NV+E F+ +    L     +      T    N   P+ S  +C
Sbjct: 172 AKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKC 219

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  105 bits (264), Expect = 9e-29
 Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 7/174 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q++   F ++Y  TI  D   K+   ++    L I DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI-EDSYRKQCVIDEETCLLDILDTAGQEE 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + ++   + R     + VY + S  SF+ + ++RE+ L      D D  P +++GNK D+
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQIL---RVKDKDRVPMILVGNKCDL 122

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 183
           D  + R VS  + +   A    IP+ ETSAK+ +NV+EAF  + +   K  +E+
Sbjct: 123 D--SERQVSTGEGQE-LAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKED 173

Length = 189

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  105 bits (264), Expect = 1e-28
 Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 16/194 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDSGVGK+SL+  +++    +    TIG DF  K++    +   L IWDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
           RF++L  ++YR A   +LVYDV   ++F NL++ W +E  + ++  D      +++GNK+
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK---MLVGNKV 130

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D +    R VS ++  A  A +    + E SAK   NVE   QC  + ALK  E     +
Sbjct: 131 DRESE--RDVSREEGMA-LAKEHGCLFLECSAKTRENVE---QCFEELALKIME-----V 179

Query: 188 PDTIDVGNSSQPRS 201
           P  ++ G+++  R+
Sbjct: 180 PSLLEEGSTAVKRN 193

Length = 211

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  104 bits (260), Expect = 3e-28
 Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     L I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + ++   ++R  +  +LV+ +  M+SF  L  +RE+ L      + DN P +++GNK D+
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQIL---RVKEDDNVPLLLVGNKCDL 117

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           +      V E       A +  + Y ETSAK   NV++ F
Sbjct: 118 EDKRQVSVEEAANL---AEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  103 bits (258), Expect = 4e-28
 Identities = 56/174 (32%), Positives = 99/174 (56%), Gaps = 13/174 (7%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            +++++GDSGVGKT L+ ++ + +F + + +TIG DF  K ++ +     +QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD---PDNFPFVVLGN 125
           R+Q++   +YR A    LVYD++S +S+ ++  W        S  D   P+    +++GN
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKW-------VSDVDEYAPEGVQKILIGN 113

Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           K   D    R V +++        G + +FETSA    N++E+F  + +  L++
Sbjct: 114 K--ADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  102 bits (255), Expect = 5e-27
 Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 32/176 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQIW 62
           K+I++GD GVGKT+ + +++  +F  +Y  T+G +     F T    + F        +W
Sbjct: 11  KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN-------VW 63

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW-REEFLIQASPSDPDNFPFV 121
           DTAGQE+F  L   +Y    C ++++DV S  ++ N+ NW R+   +       +N P V
Sbjct: 64  DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV------CENIPIV 117

Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETSAKEGINVEEAFQCIAK 174
           ++GNK+D        V +++ +A   +   K N+ Y++ SAK   N E+ F  +A+
Sbjct: 118 LVGNKVD--------VKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165

Length = 215

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  100 bits (250), Expect = 7e-27
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 13/163 (7%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V+  F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFL-IQASPSDPDNFPFVVLGNKID 128
           F S+   + +     ++VY + + ++F ++   R++ + ++      +  P +++GNK+D
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY----EKVPIILVGNKVD 117

Query: 129 VDGGNSRVVSEKKARA--WCASKGNIPYFETSAKEGINVEEAF 169
           ++       +E +A A  W       P+ ETSAK    V E F
Sbjct: 118 LESEREVSSAEGRALAEEWGC-----PFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  100 bits (251), Expect = 8e-27
 Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 7/160 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ +LG   VGK+SL  Q+V   F   Y  TI   F +K + ++ + + L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +  L   +  G    +LVY V S KSF+ +    ++ L        ++ P V++GNK D+
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG---KESVPIVLVGNKSDL 118

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
                R VS ++ +   A      + E+SAKE  NVEEAF
Sbjct: 119 H--MERQVSAEEGKK-LAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =   99 bits (250), Expect = 1e-26
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 17/179 (9%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           ++++GD  VGKT L+  Y    F   Y  T+  +  + +V+ + +   L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
             L    Y   D  ++ + V+S  SF+N    W  E +    P    N P +++G K+D+
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPE-VKHFCP----NVPIILVGTKLDL 114

Query: 130 --DGGNSRVVSEKKARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK 178
             D      +S+KK       +G         + Y E SA     V E F+   + AL 
Sbjct: 115 RNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 98.8 bits (246), Expect = 3e-26
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDRLFTLQ--IWDT 64
            +  ++GD  VGK++L+  + +    F   Y  T G D + K V   D   +++  I+D+
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQE F  +    +       +VYDV +  SF+N + W       +      + P V++G
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGL---HTPGVLVG 117

Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           NK D+     R V   +A+A  A    + ++ETSAKEG+  E  F  +A+
Sbjct: 118 NKCDLTD--RREVDAAQAQAL-AQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 98.4 bits (245), Expect = 4e-26
 Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 15/164 (9%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +     VLVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 118

Query: 130 DGGNSRVVSEKK----ARAWCASKGNIPYFETSAKEGINVEEAF 169
           +  + RVV +++    AR W  +     + ETSAK  INV E F
Sbjct: 119 E--DERVVGKEQGQNLARQWGCA-----FLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 98.8 bits (246), Expect = 6e-26
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 5/165 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGD GVGKT+L  Q     F   Y  TI  D   K+V  + +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI-EDSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + +L   + R  +  +LVY + S  +F+ +  +RE+   +       + P +++GNK D 
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQ-RVKDESAADVPIMIVGNKCDK 118

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
                R VS ++  A  A +    + E SAK  +NVE AF  + +
Sbjct: 119 V--YEREVSTEEGAA-LARRLGCEFIEASAKTNVNVERAFYTLVR 160

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 95.5 bits (238), Expect = 4e-25
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYV-NKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           K++I+GD  VGK++L+N+ + NK    +YK     +++T  ++ + + +   + DTAGQE
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYD-VNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
            + ++   +YR  +  + V+D V  +    + L    +E +  A        P +++GNK
Sbjct: 63  DYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA----ESGVPIILVGNK 118

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           ID+       +    A  +    G  P    SA+ G N++ AF+
Sbjct: 119 IDL---RDAKLKTHVAFLFAKLNGE-PIIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 96.4 bits (240), Expect = 9e-25
 Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 24/173 (13%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTK--EVQFEDRLFTLQI 61
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T   +++F         
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY-------C 66

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  + L +      +N P V
Sbjct: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC----ENIPIV 121

Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           + GNK+DV    +R V  K  +     K N+ Y+E SAK   N E+ F  +A+
Sbjct: 122 LCGNKVDV---KNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169

Length = 219

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 93.9 bits (234), Expect = 4e-24
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 24/188 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQ 67
           +K++++GD G GKT L+  Y    F  +Y  T+  +++T  +Q  +  +  L +WDTAGQ
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVT-TLQVPNGKIIELALWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREE---FLIQASPSDPDNFPFVVL 123
           E +  L    Y   D  ++ Y V++  S DN  + W  E   F            P V++
Sbjct: 63  EDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC--------PGTPIVLV 114

Query: 124 GNKIDVDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           G K D+    + V          V+ ++  +   S G + Y E SAK   NV+E F    
Sbjct: 115 GLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAI 174

Query: 174 KNALKSGE 181
             AL    
Sbjct: 175 NVALSKSG 182

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 92.7 bits (230), Expect = 1e-23
 Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           LLK +++GDS VGK  ++    +    + Y   +G D+ T  +  + R   LQ+WDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            RF ++  ++ RGA   +LVYD+ +  SFD ++ W +E    A        P +++GN++
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVGNRL 120

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
            +     R V+ ++A+A+ A +  + +FE S     N+ E+F  +A+  L
Sbjct: 121 HL--AFKRQVATEQAQAY-AERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 89.7 bits (222), Expect = 2e-22
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 20/180 (11%)

Query: 14  LGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVQFEDRLFTLQIWDTAGQE 68
           +GD G GKT+ + +++  +F  +Y AT+G       F T             +WDTAGQE
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIR-----FNVWDTAGQE 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y    C ++++DV +  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 56  KFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 110

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           V     R V  K        K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 111 V---KDRKVKAKSITF--HRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 165

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 87.1 bits (215), Expect = 1e-21
 Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 7/141 (4%)

Query: 33  FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS 92
           F N Y++TIG DFL+K +  ++    LQ+WDTAGQERF+SL  ++ R +   ++VYD+ +
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 93  MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI 152
            +SF+N   W ++ L +       +    ++GNK D+ G   +V  E+  +   A + N 
Sbjct: 65  RQSFENTTKWIQDILNERG----KDVIIALVGNKTDL-GDLRKVTYEEGMQK--AQEYNT 117

Query: 153 PYFETSAKEGINVEEAFQCIA 173
            + ETSAK G N++  F+ IA
Sbjct: 118 MFHETSAKAGHNIKVLFKKIA 138

Length = 176

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 84.1 bits (208), Expect = 1e-20
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 19/168 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + +     + TLQI DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCSKSICTLQITDTTGSHQ 61

Query: 70  FQSL-------GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           F ++       G AF       +LVY + S +S + L    E  + +   ++ +  P ++
Sbjct: 62  FPAMQRLSISKGHAF-------ILVYSITSKQSLEELKPIYEL-ICEIKGNNLEKIPIML 113

Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +GNK   D   SR VS  +  A  A   N  + ETSAK   NV+E FQ
Sbjct: 114 VGNK--CDESPSREVSSSEGAA-LARTWNCAFMETSAKTNHNVQELFQ 158

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 84.1 bits (208), Expect = 2e-20
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +++ +G +GVGKT+L+ +++   F  +++ T+  +  +KE +      T+ I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTV-EELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKID 128
           F ++     +  D   LVY V+  +SF+ +   REE L        D F P VV+GNKID
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEIL----EVKEDKFVPIVVVGNKID 115

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
                 R V    A +      N  + E SAK+  NV E F+
Sbjct: 116 S--LAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFK 155

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 82.3 bits (204), Expect = 5e-20
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ +LG SGVGK++L  +++ K+F  +Y+  + + + +++V  +    +L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 70  FQS--LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +         R AD  VLVY +    SFD ++   +  LI+         P +++GNK 
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQ--LIREIKKRDGEIPVILVGNKA 117

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN-VEEAFQCIAKNALK 178
           D+   +SR VS ++ +   A +    +FE SA E    V+  F  + +   +
Sbjct: 118 DLL--HSRQVSTEEGQK-LALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 78.7 bits (194), Expect = 1e-18
 Identities = 45/165 (27%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK+++  Q+++  F + +  TI  D    + + ++    L I DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI-EDAYKTQARIDNEPALLDILDTAGQAE 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  +  ++ Y V    SF   + ++ E + +   +  ++ P V++GNK+D+
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK-ELITRVRLT--EDIPLVLVGNKVDL 119

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +    R V+ ++ R   A + N P+FETSA     +++AF  + +
Sbjct: 120 E--QQRQVTTEEGRN-LAREFNCPFFETSAALRFYIDDAFHGLVR 161

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++++LG S VGKT+++++++  +F  QY  TI  DF  K       ++ L I DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS-----PSDPDNFPFVVLG 124
           F ++        D  +LV+ +++ +SF+ +   RE+ L   S       +    P V+ G
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           NK D D    R V   +         N  YFE SAK+  N++E F+ + 
Sbjct: 121 NKADRD--FPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 10/166 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+ I+G+   GK++L+++Y+   +  Q ++  G  F  KEV  + +   L I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYV-QLESPEGGRF-KKEVLVDGQSHLLLIRDEGGA- 57

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
                   F    D  + V+ +    SF  +     +     + S+    P +++G +  
Sbjct: 58  ----PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISE---IPLILVGTQDA 110

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N RV+ + +AR  CA      Y+ET A  G+NVE  FQ  A+
Sbjct: 111 ISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQ 156

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 77.1 bits (190), Expect = 6e-18
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 17/172 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + +   LQ+ DTAGQ+
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQD 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK-- 126
            F  L    Y   D  +L + V +  SF N+    E+++ +    +P   P +++G +  
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNI---SEKWIPEIRKHNP-KAPIILVGTQAD 115

Query: 127 --------IDVDGGNSRVVSEKKARAWCASK-GNIPYFETSAKEGINVEEAF 169
                   I +     + VS+ +A+A  A K G   Y E SA    N++E F
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKA-LAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 77.6 bits (191), Expect = 7e-18
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 18/186 (9%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKTSL+  +   +F  +Y  T+  +++T + + + +   L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEE 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKID 128
           ++ L    Y  A   ++ + +++  S +N+   W EE   +  P    N P +++G K D
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVR-RYCP----NVPVILVGLKKD 116

Query: 129 V--------DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL--- 177
           +        +      V  ++A+    + G   Y E SA  G  V++ F+   + AL   
Sbjct: 117 LRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVR 176

Query: 178 KSGEEE 183
           KSG+EE
Sbjct: 177 KSGKEE 182

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 77.0 bits (190), Expect = 7e-18
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+ +LGD+ +GKTSLM +YV  +F  +Y  T+G +F+ K +       T  IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK-- 126
            F ++     + A   + ++D+    + +++  W      QA   +    P +V G K  
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYR----QARGFNKTAIPILV-GTKYD 115

Query: 127 --IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
              D+       ++ K+AR + A     P    S    INV++ F+ +
Sbjct: 116 LFADLPPEEQEEIT-KQARKY-AKAMKAPLIFCSTSHSINVQKIFKFV 161

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 75.9 bits (187), Expect = 5e-17
 Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            +V++LGDSGVGK+SL N +    + +      G D   + V  +    TL ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP-DNFPFVVLGNKI 127
               L  +  +  D  V+VY V    SF+       E  IQ   +   ++ P +++GNK 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKA----SELRIQLRRARQAEDIPIILVGNKS 116

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA-LKSGEEE 183
           D+    SR VS ++ RA CA   +  + ETSA    NV+E F+ I +   L+   +E
Sbjct: 117 DL--VRSREVSVQEGRA-CAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKE 170

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LGD   GKTSL+N +    F   Y+ T+  ++   ++  +     L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFP---FVVLGN 125
           F  L    Y      +L + V++  S +N+ + W  E           + P    V++  
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIR--------HHCPGVKLVLVAL 112

Query: 126 KIDVDGGNSRVVSEKKARAW-----CASKGN-IPYFETSAKEGINVEEAFQCIAKNALKS 179
           K D+    +         ++      A + N   Y E SAK    V EAF   A+ AL +
Sbjct: 113 KCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNA 172

Query: 180 GEEEE 184
                
Sbjct: 173 RPPHP 177

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 29/189 (15%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWD----- 63
           ++V +LG  GVGKT+++ Q++ ++F  +Y  T         V    R++ L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 64  ----TAGQE----RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP 115
               TAGQE    RF+ L     R +   +LVYD+ S  SF  +   R++ L +  P+  
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQIL-ETRPAGN 114

Query: 116 DNFPFVVLGNKIDVDGGN---SRVVSEKKARAW-CASKGNIPYFETSAKEGINVEEAFQC 171
              P VV+GNK D          V+S    ++W C       Y E SAK   ++   F+ 
Sbjct: 115 KEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCG------YLECSAKYNWHILLLFKE 168

Query: 172 IAKNALKSG 180
           +  +A   G
Sbjct: 169 LLISATTRG 177

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 69.3 bits (170), Expect = 4e-15
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 9/159 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQE 68
           K++++G  GVGKTSL  Q + +KF     +T G +    ++   +R    L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            + +    F       +LV+D+ +      +  W     I+A        P +++G  ID
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWL--RQIKAFGGVS---PVILVGTHID 117

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167
                   + +K       +  N      S K G  + E
Sbjct: 118 ES--CDEDILKKALNKKFPAIIND-IHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 67.2 bits (165), Expect = 3e-14
 Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 10/167 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++++LG  G GKT+++ +    +       TIG  F  + V++++      +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEV-VTTIPTIG--FNVETVEYKN--VKFTVWDVGGQDK 55

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            + L   +Y   D  + V D +  +  +   N   + L +    +    P ++L NK D+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNE---EELKGAPLLILANKQDL 112

Query: 130 DGGNS-RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
            G  +   + E         +        SA  G  ++E    + + 
Sbjct: 113 PGALTESELIELLGLESIKGR-RWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 67.5 bits (165), Expect = 3e-14
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 17/179 (9%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E      P    N P +++GNK D
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCP----NVPIILVGNKKD 116

Query: 129 VDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           +      +          V  ++ RA     G   Y E SAK    V E F+   + AL
Sbjct: 117 LRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQY-----KATIGADFLTKEVQFEDRLFTLQIWD 63
           ++++++GD GVGK+SL+   V+++F         + TI AD         +R     I D
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV------TPER-VPTTIVD 55

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
           T+ + + ++   A  R A+   LVY V+   + + +        +          P +++
Sbjct: 56  TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERI----RTKWLPLIRRLGVKVPIILV 111

Query: 124 GNKID-VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           GNK D  DG +   + E+        +      E SAK  INV E F    K  L
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL 166

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL--TKEVQFEDRLFTLQIWDTAGQ 67
           KV+++GD G GK+SL++Q V  +F  +     G      T EV  +  L    IWD  G+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLL--NIWDFGGR 58

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E  +   + F + AD  +LVYD+   +S + ++      L           P +++GNK+
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAW-LPNLRKLGG-KIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 66.4 bits (162), Expect = 8e-14
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 15/170 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V  +     L +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    YRGAD  +L + + S  S++N L  W  E L   +P      P V++G K+
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPE-LRHYAP----GVPIVLVGTKL 115

Query: 128 D--------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           D         D   +  ++  +        G   Y E S+K   NV+  F
Sbjct: 116 DLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V +  SF N+   +EE++ +     P N P++++G +ID
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPYLLIGTQID 115

Query: 129 V 129
           +
Sbjct: 116 L 116

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 25/173 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-------------EDR 55
           ++V+++GDSGVGK+SL++  V      +   TIG     K + +              +R
Sbjct: 22  VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81

Query: 56  LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP 115
            F +++WD +G ER++     FY   +  + V+D++  ++  +L  W  E     + S P
Sbjct: 82  DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAP 141

Query: 116 DN--------FPFVVLGNKIDVDGGNSRVVSEKK----ARAWCASKGNIPYFE 156
                      P++V+GNK D+        S       AR W   +G +P  E
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSE 194

Length = 334

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 63.7 bits (155), Expect = 6e-13
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E +    P    N P +++G K+
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 115

Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAF 169
           D+  D      + EKK          A     G + Y E SA     ++  F
Sbjct: 116 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 63.7 bits (155), Expect = 7e-13
 Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 7/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  D     V      +TL ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCP-KTPFLLVGTQID 116

Query: 129 VDGGNSRVVSEKKAR 143
           +   +     EK A+
Sbjct: 117 LR--DDPSTIEKLAK 129

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 21/170 (12%)

Query: 13  ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72
           ++G    GKT+L+N   + +FS     T+G  F  ++V   +   T+++WD  GQ RF+S
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGN--VTIKVWDLGGQPRFRS 59

Query: 73  LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132
           +   + RG +  V V D    +  +   N   + L + S    +  P +VLGNK D+ G 
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPS---LEGIPLLVLGNKNDLPGA 116

Query: 133 NSRV-------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
            S         +     R           +  SAKE  N++     + K+
Sbjct: 117 LSVDELIEQMNLKSITDREVSC-------YSISAKEKTNIDIVLDWLIKH 159

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 18/173 (10%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L+  +    F   Y  T+  +  T   + + +   L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E   +  P    N P +++G K D
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCP----NTPVLLVGCKSD 116

Query: 129 --------VDGGNSRV--VSEKKARAWCASKGNIPYFETSAKEGIN-VEEAFQ 170
                    +  N R   VS ++ R      G   Y E SAK   N V + F+
Sbjct: 117 LRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 25/172 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-----EDRLFTLQIWD 63
           +KV++LGDSGVGK+SL++     +       T+G     +   +     E++ F +++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 64  TAGQ----ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP---- 115
             G     E  +S    FY   +  + V+D+ + KS  NL  W  E L + +        
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 116 ----------DN-FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156
                      N  P +V+G K+D      R     +  A+ +   N     
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRT-AFLSEDFNAEEIN 171

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 17/172 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  + +   + R  +L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   +  ++ + + S  S++N+ + W  E +    P    N P +++G K 
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPE-VCHHCP----NVPILLVGTKK 117

Query: 128 DVDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           D+      +          ++ ++  A       + Y E SA     V+E F
Sbjct: 118 DLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG    GKT+++ +    +       TIG  F  + V +++      +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVT-TIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             + L   ++   D  + V D       +     +EE     +  +  + P ++L NK D
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEA---KEELHALLNEEELADAPLLILANKQD 126

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           + G  +   + E       K R W            SA  G  ++E    ++  
Sbjct: 127 LPGAMSEAEIRELLGLHELKDRPWEI-------QGCSAVTGEGLDEGLDWLSNY 173

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 55.1 bits (132), Expect = 1e-09
 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWR---EEF------LIQASPSD--PDN 117
           + ++    Y  +D  ++ +D++  ++ D+ L  W+   +EF      L+    SD   D 
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 125

Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164
              V L N           VS  +        G   Y E SA +  N
Sbjct: 126 STLVELSNHRQTP------VSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYK--------ATIGADFLTKEVQFEDRLFTLQIW 62
           V+ILG    GKT+ + Q    KFS  YK         T+G +  T EV        L  W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKA----RLMFW 56

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           D  GQE  +SL   +Y  A+   ++Y ++S    +  N  +  F    +    +  P +V
Sbjct: 57  DLGGQEELRSLWDKYY--AESHGVIYVIDSTDR-ERFNESKSAFEKVINNEALEGVPLLV 113

Query: 123 LGNKIDVDG 131
           L NK D+  
Sbjct: 114 LANKQDLPD 122

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 14/169 (8%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V++LG    GK++L+ +  + +       T+G  F  + +Q E +  +L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD--NFPFVVLGNKI 127
            +++   +    D  V V D +     D      +  L      +      P V+L NK 
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHIL-----KNEHIKGVPVVLLANKQ 111

Query: 128 DVDGG-NSRVVSEK-KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D+ G   +  ++ + K + +C+ + +      SA  G  + EAF+ +A 
Sbjct: 112 DLPGALTAEEITRRFKLKKYCSDR-DWYVQPCSAVTGEGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 32/176 (18%)

Query: 10  KVIILGDSGVGKTSL-----MNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +++ILG  G GKT++     + + V          TIG  F  + V +++  F  Q+WD 
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV------TTIPTIG--FNVETVTYKNLKF--QVWDL 50

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
            GQ   +     +Y  ++   ++Y V+S    D L   + E        +  +   +V  
Sbjct: 51  GGQTSIRPYWRCYY--SNTDAIIYVVDSTDR-DRLGISKSELHAMLEEEELKDAVLLVFA 107

Query: 125 NKIDVDGGNSRV-VSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           NK D+ G  S   V+EK      K R W      I  F+TSA +G  ++E    + 
Sbjct: 108 NKQDMPGALSEAEVAEKLGLSELKDRTW-----QI--FKTSATKGEGLDEGMDWLV 156

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 73

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
           + ++    Y  +D  +L +D++  + FD+ L  WR E L
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEIL 112

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 31/186 (16%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
            PS R+ + ++++LG    GKT+++ Q  ++  S     T G  F  K VQ +   F L 
Sbjct: 9   KPSSRQEV-RILLLGLDNAGKTTILKQLASEDIS-HITPTQG--FNIKNVQADG--FKLN 62

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           +WD  GQ + +     ++   D  + V D    K F+       E L +   +     P 
Sbjct: 63  VWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLA---GVPV 119

Query: 121 VVLGNKID-VDGGNSRVVSEK------KARAW----CASKGNIPYFETSAKEGINVEEAF 169
           +V  NK D +    +  V+E       + R+W    C           SAK G  ++E  
Sbjct: 120 LVFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQAC-----------SAKTGEGLQEGM 168

Query: 170 QCIAKN 175
             + KN
Sbjct: 169 NWVCKN 174

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 30/158 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD---FLTKEVQFEDRLFTLQIWDTAG 66
           KVII+G    GKT+++ Q++  +       TIG++    + K ++F        +WD  G
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVEEIVYKNIRFL-------MWDIGG 68

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLG 124
           QE  +S    +Y   D  +LV D     S D   L   +EE     +  D      +VL 
Sbjct: 69  QESLRSSWNTYYTNTDAVILVID-----STDRERLPLTKEELYKMLAHEDLRKAVLLVLA 123

Query: 125 NKIDVDGGNSRV-VSEK------KARAW-----CASKG 150
           NK D+ G  +   +SE       +   W     CA  G
Sbjct: 124 NKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 26/188 (13%)

Query: 10  KVIILGDSGVGKTSLMNQYVNK------------KFSNQYKATIGADFLTKEVQFEDRLF 57
           K++++G  G GKT+ +    +K                +   T+  DF + E+   D   
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDT 68

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            + ++ T GQERF+ +     RGA   +++ D +   +F        E +I    S  + 
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF------HAEEIIDFLTSR-NP 121

Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI-AKNA 176
            P VV  NK D+         EK   A      ++P  E  A EG    +    +  K+ 
Sbjct: 122 IPVVVAINKQDLFDALP---PEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDL 178

Query: 177 LKSGEEEE 184
           L S  EE 
Sbjct: 179 LGSANEEA 186

Length = 187

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 21/139 (15%)

Query: 9   LKVIILGDSGVGKTSLM-----NQYVNKKFSNQYKATIGADFLTKEVQF---EDRLFTLQ 60
           L +++LG    GKT+++     N++VN         T G  F T++++      +  T  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTV------PTKG--FNTEKIKVSLGNAKGVTFH 55

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
            WD  GQE+ + L  ++ R  D  V V D   +   + +   + E       S+    P 
Sbjct: 56  FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV---ERMEEAKTELHKITKFSENQGVPV 112

Query: 121 VVLGNKIDVDGGNSRVVSE 139
           +VL NK D+   N+  VSE
Sbjct: 113 LVLANKQDL--PNALPVSE 129

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD+  GKT+L++ +    +   Y  T+  ++ T   + +     L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E         P N   V++G K+D
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE----TQEFCP-NAKLVLVGCKLD 116

Query: 129 V 129
           +
Sbjct: 117 M 117

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 53/209 (25%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT--------------IGADFLTKEVQFE 53
            +K +++GD+ VGKT L+      K   QY+                +  + L +     
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 54  DRLF-TLQIWDTAG----QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFL 107
           D +  +L++WDT G      RF     A+ R +D  +L + + S  S  N+   W  E +
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPE-I 114

Query: 108 IQASPSDPDNFPFVVLGNKIDV-----------------DGGNSRVVSEKKARAWCASKG 150
               P      P +++G K+D+                    N+ ++  +  RA  A + 
Sbjct: 115 RHFCPR----VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAV-AKEL 169

Query: 151 NIPYFETSAKEGINVEEAFQCIAKNALKS 179
            IPY+ETS      V++ F     NA+++
Sbjct: 170 GIPYYETSVVTQFGVKDVFD----NAIRA 194

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +++LG  G GKTSL++   +++       T G  F +  +  +D    +++ +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQD--AIMELLEIGGSQNL 57

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF--LIQASPSDPDNFPFVVLGNKID 128
           +     +  G+    L++ V+S  S   L   R+E   L+Q  P      P VVL NK D
Sbjct: 58  RKYWKRYLSGSQ--GLIFVVDSADSER-LPLARQELHQLLQHPPD----LPLVVLANKQD 110

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 36/163 (22%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA--------DFLTKEVQFEDRLFTLQ 60
           ++++++G    GKT+++           YK  +G          F  + V +++  FT  
Sbjct: 14  MRILMVGLDAAGKTTIL-----------YKLKLGESVTTIPTIGFNVETVTYKNISFT-- 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           +WD  GQ++ + L   +Y      + V D N     D ++  REE     +  +  +   
Sbjct: 61  VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDR---DRIDEAREELHRMLNEDELRDAVI 117

Query: 121 VVLGNKIDV-DGGNSRVVSEK------KARAW-----CASKGN 151
           +V  NK D+ D   +  ++EK      + R W     CA+ G+
Sbjct: 118 LVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 25/133 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVQFEDRLFTLQIW 62
           KV+++G  G GK+S M   +   FSN       +  ATI    + +         TL +W
Sbjct: 1   KVLLMGLRGSGKSS-MRSII---FSNYSPRDTLRLGATID---VEQSHVRFLGNLTLNLW 53

Query: 63  DTAGQERFQSLGVAFYRGA---DCCVLVY--DVNSMKSFDNLNNWRE--EFLIQASPSDP 115
           D  GQ+ F    +   +     +  VL+Y  DV S +  ++L    +  E L Q SP   
Sbjct: 54  DCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSP--- 110

Query: 116 DNFPFVVLGNKID 128
            N    VL +K+D
Sbjct: 111 -NAKVFVLIHKMD 122

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 36/181 (19%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVQFEDRLFTLQIWDTAG 66
           +++++LG    GKT+++     KKF+ +  +TI     F  K +++    + L IWD  G
Sbjct: 15  MRILMLGLDNAGKTTIL-----KKFNGEDISTISPTLGFNIKTLEYNG--YKLNIWDVGG 67

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-----WREEFLIQASPSDPDNFPFV 121
           Q+  +S    ++   D  + V D +     ++          EE L  A+         +
Sbjct: 68  QKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGAT--------LL 119

Query: 122 VLGNKIDVDG-------GNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +  NK D+ G            +   K+  W         F  SA  G N+ +    +  
Sbjct: 120 IFANKQDLPGALSPEEIREVLELDSIKSHHWRI-------FGCSAVTGENLLDGIDWLVD 172

Query: 175 N 175
           +
Sbjct: 173 D 173

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 36/170 (21%), Positives = 52/170 (30%), Gaps = 21/170 (12%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           TL   ++     + +     +        + +  I       E ++  R       DT G
Sbjct: 14  TLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPKRRIN--FIDTPG 71

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
            E F    V     AD  +LV D N               E L  A        P +V  
Sbjct: 72  HEDFSKETVRGLAQADGALLVVDANEGVEPQT-------REHLNIALAGGL---PIIVAV 121

Query: 125 NKIDVDGGN------SRVVSEKKARAWCASKG-NIPYFETSAKEGINVEE 167
           NKID  G          +    K   +   KG ++P    SA  G  +EE
Sbjct: 122 NKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGEGIEE 171

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 6  RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
          R +    +LG  G GK++L+  ++ + FS N Y  TI   +    V+   +   L + + 
Sbjct: 2  RNVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREV 61

Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSF 96
             E    L  A     D   LVYD +   SF
Sbjct: 62 GEDEEAILLNDAELAACDVACLVYDSSDPNSF 93

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V+ LG  G GKT+++ +    +F  Q   TIG  F  + V++++  FT  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIG--FNVETVEYKNLKFT--IWDVGGKHK 55

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            + L   +Y      V V D +     D ++    E     +  +  +   ++  NK DV
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHR---DRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112

Query: 130 DGG 132
            G 
Sbjct: 113 AGA 115

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 44/203 (21%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA------DFLTKEVQFEDRL 56
              R  LKV+I+G   VGK+SL+N         + +A +        D +  E       
Sbjct: 212 KILREGLKVVIIGRPNVGKSSLLNA-----LLGRDRAIVTDIAGTTRDVI--EEDINLNG 264

Query: 57  FTLQIWDTAGQ-------ERFQSLGV----AFYRGADCCVLVYDVNSMKSFDNLNNWREE 105
             +++ DTAG        ER   +G+         AD  + V D +     ++L      
Sbjct: 265 IPVRLVDTAGIRETDDVVER---IGIERAKKAIEEADLVLFVLDASQPLDKEDL-----A 316

Query: 106 FLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165
            +       P   P +V+ NK D        +  K                 SAK G  +
Sbjct: 317 LIELL----PKKKPIIVVLNKAD--------LVSKIELESEKLANGDAIISISAKTGEGL 364

Query: 166 EEAFQCIAKNALKSGEEEEIYLP 188
           +   + I +   K    +E    
Sbjct: 365 DALREAIKQLFGKGLGNQEGLFL 387

Length = 454

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 28/138 (20%)

Query: 4   RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEVQFEDRLFTL 59
           +     K+ I+G   VGK+SL+N         Q +A +    G      E  FE     +
Sbjct: 199 KLDDGFKLAIVGSPNVGKSSLLN-----ALLKQDRAIVSDIKGTTRDVVEGDFELNGILI 253

Query: 60  QIWDTAG----QERFQSLGVAFYRG----ADCCVLVYDVNSMKSFDNLNNWREE-FLIQA 110
           ++ DTAG     +  + LG+         AD  + V D +            ++ FLI  
Sbjct: 254 KLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ--------PLTKDDFLI-- 303

Query: 111 SPSDPDNFPFVVLGNKID 128
              +    PF+++ NKID
Sbjct: 304 IDLNKSKKPFILVLNKID 321

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 40/165 (24%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYK----------ATIGADFLTKEVQFEDRLFT 58
           ++++++G    GKT+++           YK           TIG  F  + V++++  FT
Sbjct: 1   MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIG--FNVETVEYKNISFT 47

Query: 59  LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF 118
             +WD  GQ++ + L   +++     + V D N     + +   REE     +  +  + 
Sbjct: 48  --VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELQRMLNEDELRDA 102

Query: 119 PFVVLGNKIDVDGG-NSRVVSEK------KARAW-----CASKGN 151
             +V  NK D+    ++  V++K      + R W     CA+ G+
Sbjct: 103 VLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGD 147

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +++LG    GKT+++NQ    K SN     I          F+    +   +D +GQ ++
Sbjct: 2   ILVLGLDNSGKTTIINQL---KPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKY 58

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNN--WREEF--LIQASPSDPDNFPFVVLGNK 126
           + L   +Y+     + V D     S D L     ++E   L+          P +   NK
Sbjct: 59  RGLWEHYYKNIQGIIFVID-----SSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANK 113

Query: 127 IDVDGGNSRV-------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +D+    + V       +   K + W     +I  F +SA  G  ++E   
Sbjct: 114 MDLPDALTAVKITQLLCLENIKDKPW-----HI--FASSALTGEGLDEGVD 157

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%)

Query: 40  TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL 99
           TIG  F  + V++++  FT  +WD  GQ++ + L   +Y+  +  + V D N     + +
Sbjct: 48  TIG--FNVETVEYKNLKFT--MWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDR---ERI 100

Query: 100 NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VSEK------KARAW-----CA 147
            + REE     S  +  +   +V  NK D+    S   V+EK      + R W     CA
Sbjct: 101 GDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160

Query: 148 SKGN 151
           +   
Sbjct: 161 TTAQ 164

Length = 182

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 38.2 bits (90), Expect = 9e-04
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 49/186 (26%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           +KV+I G   VGK+SL+N       + + +A I     G   D + +E+        +++
Sbjct: 4   IKVVIAGKPNVGKSSLLNA-----LAGRDRA-IVSDIAGTTRDVIEEEIDLGG--IPVRL 55

Query: 62  WDTAGQ-------ERFQSLGV--AFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQA 110
            DTAG        E+   +G+  A      AD  +LV D +  +  D      E+  I  
Sbjct: 56  IDTAGLRETEDEIEK---IGIERAREAIEEADLVLLVVDAS--EGLDE-----EDLEILE 105

Query: 111 SPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
            P+     P +V+ NK D+                 +     P    SAK G  ++E  +
Sbjct: 106 LPAKK---PVIVVLNKSDL----------LSDAEGISELNGKPIIAISAKTGEGIDELKE 152

Query: 171 CIAKNA 176
            + + A
Sbjct: 153 ALLELA 158

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 40/177 (22%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ---FEDRLFTLQIWDTAG- 66
           ++I G   VGK+SL+N+    K            F TK +    F+ +    Q+ DT G 
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAKPEVAPYP-----FTTKSLFVGHFDYKYLRWQVIDTPGI 57

Query: 67  -----QER----FQSLGVAFYRGADCCVLVYDVN-----SMKS-FDNLNNWREEFLIQAS 111
                +ER     Q++  A        +   D +     S++         +  F     
Sbjct: 58  LDRPLEERNTIEMQAI-TALAHLRAAVLFFIDPSETCGYSIEEQLSLFKEIKPLF----- 111

Query: 112 PSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168
                N P +V+ NKID+         EK+       K      + S      V+E 
Sbjct: 112 -----NKPVIVVLNKIDLLTEEDLSEIEKELE-----KEGEEVIKISTLTEEGVDEL 158

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 45/215 (20%), Positives = 73/215 (33%), Gaps = 61/215 (28%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-------FLTKEVQ-- 51
           +P+    L  +++ G   VGK+SL+            +    A        F TK +   
Sbjct: 161 LPAIDPDLPTIVVAGYPNVGKSSLV------------RKLTTAKPEVAPYPFTTKGIHVG 208

Query: 52  -FEDRLFTLQIWDTAGQ-----------ERFQSLGVAFYRGA---------DCCVLVYDV 90
            FE     +Q+ DT G            ER   L +    G           C    Y +
Sbjct: 209 HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GYSL 265

Query: 91  NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 150
               S   L   +E F            P VV+ NKID+    +     ++  A    +G
Sbjct: 266 EEQISL--LEEIKELF----------KAPIVVVINKIDI----ADEEKLEEIEASVLEEG 309

Query: 151 NIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185
                + SA +G  +++  + + K AL+   EE  
Sbjct: 310 GEEPLKISATKGCGLDKLREEVRKTALEPLLEERS 344

Length = 346

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 117 NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
             P++V+ NKID+   ++ +   +K          +P    SA  G  ++E  + I +  
Sbjct: 114 KIPYIVVINKIDLGEESAELEKLEKKF-------GLPPIFVSALTGEGIDELKEAIIELL 166

Query: 177 LKSGEEEEI 185
            +  EE  I
Sbjct: 167 PEDFEEPTI 175

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 56/201 (27%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           LKV+I G   VGK+SL+N  + ++     +A I     G   D + + +  +     L  
Sbjct: 216 LKVVIAGRPNVGKSSLLNALLGEE-----RA-IVTDIAGTTRDVIEEHINLDGIPLRLI- 268

Query: 62  WDTAG------------QER-FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLI 108
            DTAG             ER  +++       AD  +LV D +   + ++     E    
Sbjct: 269 -DTAGIRETDDEVEKIGIERSREAI-----EEADLVLLVLDASEPLTEEDDEILEE---- 318

Query: 109 QASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168
                   + P +V+ NK D+ G                 +   P    SAK G  ++E 
Sbjct: 319 ------LKDKPVIVVLNKADLTGE-----------IDLEEENGKPVIRISAKTGEGIDEL 361

Query: 169 FQCIAKNALK--SGEEEEIYL 187
            + I + A     G +E ++L
Sbjct: 362 REAIKELAFGGFGGNQEGVFL 382

Length = 449

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 24/175 (13%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +++++LG    GKT+++  Y  K    Q   TI    F  + V +++  F   +WD  GQ
Sbjct: 10  MRILMLGLDAAGKTTIL--YKLKL--GQSVTTIPTVGFNVETVTYKNVKFN--VWDVGGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ++ + L   +Y G     L++ V+S    D ++  R+E     +  +  +   +V  NK 
Sbjct: 64  DKIRPLWRHYYTGTQG--LIFVVDSADR-DRIDEARQELHRIINDREMRDALLLVFANKQ 120

Query: 128 DVDGGNS-RVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           D+        + EK      + R W       P   + A  G  + E    ++ N
Sbjct: 121 DLPDAMKPHEIQEKLGLTRIRDRNWYV----QP---SCATSGDGLYEGLTWLSSN 168

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PLN03108	210	Rab family protein; Provisional	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.95
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
PTZ00099	176	rab6; Provisional	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
cd00881	189	GTP_translation_factor GTP translation factor fami	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.91
COG1100	219	GTPase SAR1 and related small G proteins [General	99.91
PRK15494	339	era GTPase Era; Provisional	99.91
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
COG1159	298	Era GTPase [General function prediction only]	99.91
PRK12298	390	obgE GTPase CgtA; Reviewed	99.91
PRK00089	292	era GTPase Era; Reviewed	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
PRK11058	426	GTPase HflX; Provisional	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.89
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.89
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
CHL00189	742	infB translation initiation factor 2; Provisional	99.89
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.89
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
PRK05433	600	GTP-binding protein LepA; Provisional	99.88
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.87
KOG1673	205	consensus Ras GTPases [General function prediction	99.87
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.87
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.87
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.87
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.87
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.87
PRK12317	425	elongation factor 1-alpha; Reviewed	99.87
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.86
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
COG0218	200	Predicted GTPase [General function prediction only	99.86
PRK10218	607	GTP-binding protein; Provisional	99.86
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.85
PRK12736	394	elongation factor Tu; Reviewed	99.85
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.85
PRK12735	396	elongation factor Tu; Reviewed	99.85
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.84
COG1084	346	Predicted GTPase [General function prediction only	99.84
CHL00071	409	tufA elongation factor Tu	99.83
COG2262	411	HflX GTPases [General function prediction only]	99.83
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.83
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.82
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.82
PRK04004	586	translation initiation factor IF-2; Validated	99.82
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.82
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.82
PRK00049	396	elongation factor Tu; Reviewed	99.82
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.82
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.82
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.82
PLN03126	478	Elongation factor Tu; Provisional	99.81
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.81
PLN03127	447	Elongation factor Tu; Provisional	99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
PLN00043	447	elongation factor 1-alpha; Provisional	99.81
PTZ00141	446	elongation factor 1- alpha; Provisional	99.8
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.8
COG1163	365	DRG Predicted GTPase [General function prediction	99.79
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.79
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.78
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.78
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.77
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.76
COG0536	369	Obg Predicted GTPase [General function prediction	99.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.76
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.75
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.75
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.75
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.75
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.75
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.74
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.73
COG3596	296	Predicted GTPase [General function prediction only	99.73
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.72
PRK13351	687	elongation factor G; Reviewed	99.72
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.71
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.71
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.71
KOG1145	683	consensus Mitochondrial translation initiation fac	99.7
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.7
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.7
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.7
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.69
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.69
KOG0090	238	consensus Signal recognition particle receptor, be	99.69
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.68
PRK09866	741	hypothetical protein; Provisional	99.68
PRK09602	396	translation-associated GTPase; Reviewed	99.68
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.67
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.66
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.65
PRK12739	691	elongation factor G; Reviewed	99.65
PRK00007	693	elongation factor G; Reviewed	99.65
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.64
PRK12740	668	elongation factor G; Reviewed	99.62
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.62
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.6
PTZ00258	390	GTP-binding protein; Provisional	99.59
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.57
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.56
PRK07560	731	elongation factor EF-2; Reviewed	99.56
PRK13768	253	GTPase; Provisional	99.56
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.56
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.55
PRK14845	1049	translation initiation factor IF-2; Provisional	99.54
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.53
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.53
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.53
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.53
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.52
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.52
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.52
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.51
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.51
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.51
PTZ00416	836	elongation factor 2; Provisional	99.5
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.5
PRK09601	364	GTP-binding protein YchF; Reviewed	99.49
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.48
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.48
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.47
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.46
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.44
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.43
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.42
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.42
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.41
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.41
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.41
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.4
KOG0410	410	consensus Predicted GTP binding protein [General f	99.38
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.37
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.36
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.36
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.35
KOG0460	449	consensus Mitochondrial translation elongation fac	99.32
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.32
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.31
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.31
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.3
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.3
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.28
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.28
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.27
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.27
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.25
KOG0466	466	consensus Translation initiation factor 2, gamma s	99.23
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.23
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.22
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.2
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.2
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.19
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.19
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.17
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	99.15
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.1
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.09
KOG1143	591	consensus Predicted translation elongation factor	99.09
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.07
PRK12288	347	GTPase RsgA; Reviewed	98.97
PRK12289	352	GTPase RsgA; Reviewed	98.97
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.95
PRK00098	298	GTPase RsgA; Reviewed	98.93
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.92
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.91
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.9
KOG2486	320	consensus Predicted GTPase [General function predi	98.89
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.86
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.86
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.85
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.84
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.83
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.82
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.8
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.8
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.76
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.73
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.72
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.72
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.71
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.7
PRK14974	336	cell division protein FtsY; Provisional	98.68
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.68
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.68
PRK10416	318	signal recognition particle-docking protein FtsY;	98.67
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.67
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.66
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.66
COG1161	322	Predicted GTPases [General function prediction onl	98.65
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.65
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.63
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.62
cd03112	158	CobW_like The function of this protein family is u	98.62
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.62
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.61
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.6
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.56
PRK01889	356	GTPase RsgA; Reviewed	98.52
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.51
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.5
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.5
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.5
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.47
PRK13796	365	GTPase YqeH; Provisional	98.45
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.43
PRK12288	347	GTPase RsgA; Reviewed	98.42
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.41
COG3523	1188	IcmF Type VI protein secretion system component Va	98.4
PRK13796	365	GTPase YqeH; Provisional	98.37
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.36
COG1162	301	Predicted GTPases [General function prediction onl	98.36
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.36
PRK12289	352	GTPase RsgA; Reviewed	98.32
COG0523	323	Putative GTPases (G3E family) [General function pr	98.31
KOG1533	290	consensus Predicted GTPase [General function predi	98.29
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.29
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.28
cd03114	148	ArgK-like The function of this protein family is u	98.27
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.25
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.22
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.21
COG1162	301	Predicted GTPases [General function prediction onl	98.2
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.2
TIGR00959	428	ffh signal recognition particle protein. This mode	98.19
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.18
PRK10867	433	signal recognition particle protein; Provisional	98.16
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.16
PRK13695	174	putative NTPase; Provisional	98.14
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.14
PRK00098	298	GTPase RsgA; Reviewed	98.1
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.09
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.08
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.08
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.08
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.06
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.01
KOG2484	435	consensus GTPase [General function prediction only	97.99
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.97
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.96
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.92
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.91
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.89
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.86
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.86
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.85
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.85
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.8
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.76
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.73
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.73
PRK08118	167	topology modulation protein; Reviewed	97.68
PRK07261	171	topology modulation protein; Provisional	97.65
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.65
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.62
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.59
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.57
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.56
PF05729	166	NACHT: NACHT domain	97.56
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.56
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.56
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.55
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.54
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.53
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.52
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.52
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.49
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.48
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.48
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.47
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.46
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.45
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.45
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.44
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.44
PRK14738	206	gmk guanylate kinase; Provisional	97.43
KOG2484	435	consensus GTPase [General function prediction only	97.42
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.42
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.41
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.4
PRK14737	186	gmk guanylate kinase; Provisional	97.4
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.39
PRK06217	183	hypothetical protein; Validated	97.39
PRK03839	180	putative kinase; Provisional	97.38
COG1161	322	Predicted GTPases [General function prediction onl	97.38
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.36
PTZ00088	229	adenylate kinase 1; Provisional	97.36
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.34
PRK14530	215	adenylate kinase; Provisional	97.33
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.33
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.31
PF00004	132	AAA: ATPase family associated with various cellula	97.31
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.28
PRK05480	209	uridine/cytidine kinase; Provisional	97.28
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.27
smart00382	148	AAA ATPases associated with a variety of cellular	97.27
PRK14532	188	adenylate kinase; Provisional	97.27
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.27
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.27
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.25
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.24
PRK13949	169	shikimate kinase; Provisional	97.23
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.23
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.22
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.22
PRK08233	182	hypothetical protein; Provisional	97.22
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.22
cd03111	106	CpaE_like This protein family consists of proteins	97.21
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.21
cd03110	179	Fer4_NifH_child This protein family's function is	97.19
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.19
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.18
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.17
PRK07429	327	phosphoribulokinase; Provisional	97.16
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.16
PRK10646	153	ADP-binding protein; Provisional	97.16
PRK06547	172	hypothetical protein; Provisional	97.16
PRK02496	184	adk adenylate kinase; Provisional	97.16
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.14
PRK14531	183	adenylate kinase; Provisional	97.14
PRK01889	356	GTPase RsgA; Reviewed	97.14
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.14

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-42  Score=234.88  Aligned_cols=199  Identities=38%  Similarity=0.678  Sum_probs=179.5

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |+..-++.|||+|+|.+|+|||.|+.||..+.|.+.+.+|.|.++..+.+.++++.+.+++|||+||++|+....+++++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            45566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEeec
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP-YFETSA  159 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~  159 (206)
                      +|++|+|||+++.+||..+..|+.++......    ++|.++|+||+|+.+.  +.+..++++.|+..++ .+ ++++||
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~-~~~f~ETSA  154 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQEFADELG-IPIFLETSA  154 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHHHHHhcC-Ccceeeccc
Confidence            99999999999999999999999999888776    7899999999999987  8999999999999998 66 999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCccccccC---CcccccCC-CCCCCCCCccC
Q 028647          160 KEGINVEEAFQCIAKNALKSGEEEEIYL---PDTIDVGN-SSQPRSSGCEC  206 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~gc~~  206 (206)
                      +++.|+++.|..|...+..+........   +..+++.. +.....+||||
T Consensus       155 K~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  155 KDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE  205 (205)
T ss_pred             CCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence            9999999999999999988877665544   55666666 33444555853

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.3e-41  Score=228.65  Aligned_cols=206  Identities=77%  Similarity=1.202  Sum_probs=185.9

Q ss_pred             CCc-ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc
Q 028647            1 MPS-RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR   79 (206)
Q Consensus         1 ~~~-~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (206)
                      |.. ++...++|.++|.+|+|||||++++...+|...+..+.+.++..+++.++++.+.+++|||+|+++|.++-..+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            555 5577899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      ++|+.+++||++++.||+.+..|..+++....+..+...|+||++||+|+.+...++++.+.++.|+...++++++++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999999999999889999999999999988889999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCcccc---ccCCcccccCCCCCCCCCCccC
Q 028647          160 KEGINVEEAFQCIAKNALKSGEEEE---IYLPDTIDVGNSSQPRSSGCEC  206 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gc~~  206 (206)
                      ++..|+++.|+.+.+.++.......   ......+....+..+.++||.|
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~~c~c  210 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSSGCEC  210 (210)
T ss_pred             cccccHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCCCCCC
Confidence            9999999999999999998775422   2344444444444555556667

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-40  Score=224.74  Aligned_cols=194  Identities=44%  Similarity=0.735  Sum_probs=175.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...+||+++|..++|||||+.|+..+.|.+...+|+|..+....+.+++..+++.||||+|+++|.++...++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||+++.+||..+..|+.++.+...+    ++-+.+|+||+||.+.  +.+..++++.++...+ ..++++||++|.|+
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~----~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv  155 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASP----NIVIALVGNKADLLER--REVEFEEAQAYAESQG-LLFFETSAKTGENV  155 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCC----CeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-CEEEEEecccccCH
Confidence            999999999999999999999887763    7778899999999986  8899999999999987 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccccCC---cccccCCC-CCCCCCCccC
Q 028647          166 EEAFQCIAKNALKSGEEEEIYLP---DTIDVGNS-SQPRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~gc~~  206 (206)
                      +++|..|.+.++....+.....+   ..+.+... ...+++||||
T Consensus       156 ~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  156 NEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA  200 (200)
T ss_pred             HHHHHHHHHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence            99999999999998888775333   33444322 4677888965

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-37  Score=210.98  Aligned_cols=175  Identities=39%  Similarity=0.610  Sum_probs=160.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+|++++|..++||||||++|..+.+...+.+|.|.++....+.+.++.+.+++|||+||++|+.+...+++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |||+++..||+...+|+..+......   .++-+++|+||.||.+.  ++...++....++.++ +.|+++||+.|.|++
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs---~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~-a~f~etsak~g~NVk  174 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGS---DDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN-AEFIETSAKAGENVK  174 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCC---CceEEEEEcccccccch--hhhhHHHHHHHHHHhC-cEEEEecccCCCCHH
Confidence            99999999999999999998765443   24678899999999988  8999999999999998 799999999999999


Q ss_pred             HHHHHHHHHHHhcCccccccC
Q 028647          167 EAFQCIAKNALKSGEEEEIYL  187 (206)
Q Consensus       167 ~l~~~l~~~~~~~~~~~~~~~  187 (206)
                      .+|..|...++..........
T Consensus       175 ~lFrrIaa~l~~~~~~~~~~~  195 (221)
T KOG0094|consen  175 QLFRRIAAALPGMEVLEILSK  195 (221)
T ss_pred             HHHHHHHHhccCccccccccc
Confidence            999999988887765444444

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.5e-37  Score=221.18  Aligned_cols=195  Identities=36%  Similarity=0.677  Sum_probs=163.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      +||+|+|++|||||||+++|..+.+...+.++.+.++....+.++ +..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888988888877778887 7788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      ||++++++++.+..|+..+..........++|+++|+||+|+...  +....+++.++++..+..+++++||++|.|+++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e  158 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENGFIGWFETSAKEGINIEE  158 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence            999999999999999888765443322347899999999999753  556788889999888767899999999999999


Q ss_pred             HHHHHHHHHHhcCccccccCC-----cccccCCCCCCCCCCccC
Q 028647          168 AFQCIAKNALKSGEEEEIYLP-----DTIDVGNSSQPRSSGCEC  206 (206)
Q Consensus       168 l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~gc~~  206 (206)
                      +|++|++.+...........+     ......++...+++|| |
T Consensus       159 ~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  201 (201)
T cd04107         159 AMRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGC-C  201 (201)
T ss_pred             HHHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCC-C
Confidence            999999999887654444432     2233345556677799 5

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-36  Score=210.20  Aligned_cols=174  Identities=41%  Similarity=0.727  Sum_probs=165.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..++.++|+++|.++||||+++.+|..+.+...+..+.+.++..+.+..++..+.+++|||+||+++......+++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|||+++..||+.+..|+..+..+...    ++|.++|+||+|+...  +++..+..++++..++ +.|+++||++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~lA~e~G-~~F~EtSAk~~~  160 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEALAREYG-IKFFETSAKTNF  160 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHHHHHHhC-CeEEEccccCCC
Confidence            99999999999999999999999887765    8999999999999886  8999999999999997 999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCcccc
Q 028647          164 NVEEAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~~~~  184 (206)
                      ||++.|-.|.+.++.+.+..+
T Consensus       161 NI~eaF~~La~~i~~k~~~~~  181 (207)
T KOG0078|consen  161 NIEEAFLSLARDILQKLEDAE  181 (207)
T ss_pred             CHHHHHHHHHHHHHhhcchhh
Confidence            999999999999997666644

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-36  Score=200.10  Aligned_cols=183  Identities=34%  Similarity=0.586  Sum_probs=164.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+++|.+|+|||||+.+|+...|.+....+.|.++.++.+.+++..+++.||||+|+++|+.+...+++.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||++.+++|..+..|+.++.......   ++-.++|+||+|....  +.++.++...|++... +-|+++||++.+|+
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V  162 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGLKFARKHR-CLFIECSAKTRENV  162 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHHHHHHhhC-cEEEEcchhhhccH
Confidence            9999999999999999999998776643   6778899999997754  8899999999999998 88999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccc-cCCcccccC
Q 028647          166 EEAFQCIAKNALKSGEEEEI-YLPDTIDVG  194 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~  194 (206)
                      +..|+.++..+++.+.--+. ...+...+.
T Consensus       163 ~~~FeelveKIi~tp~l~~~~n~~~~~~i~  192 (209)
T KOG0080|consen  163 QCCFEELVEKIIETPSLWEEGNSSAGLDIA  192 (209)
T ss_pred             HHHHHHHHHHHhcCcchhhccCCccccccc
Confidence            99999999999887665543 333444444

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.7e-35  Score=209.91  Aligned_cols=172  Identities=30%  Similarity=0.553  Sum_probs=153.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..+||+|+|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999998888777788888887788888998999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||++++.+++.+..|+.++.....     +.|+++|+||.|+.+.  +.+..++++.+++..+ ++++++||++|.|+
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~~-----~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~-~~~~e~SAk~g~~V  155 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVGNRLHLAFK--RQVATEQAQAYAERNG-MTFFEVSPLCNFNI  155 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccchhc--cCCCHHHHHHHHHHcC-CEEEEecCCCCCCH
Confidence            99999999999999999999966542     7899999999999765  5677889999998887 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccc
Q 028647          166 EEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~  185 (206)
                      +++|++|.+.++.+...++.
T Consensus       156 ~~~F~~l~~~i~~~~~~~~~  175 (189)
T cd04121         156 TESFTELARIVLMRHGRPPQ  175 (189)
T ss_pred             HHHHHHHHHHHHHhcCCCCC
Confidence            99999999988765554443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2e-35  Score=211.02  Aligned_cols=190  Identities=41%  Similarity=0.649  Sum_probs=161.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      +||+|+|++|||||||+++|..+.+.. .+.++.+.++....+.+++..+.+.|||+||++.+......+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988764 5667777777666778888889999999999999988888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|++++++++.+..|+..+......    ++|+++|+||+|+...  +....++...+...++ .+++++||++|.|+++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~  153 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE--RVVKREDGERLAKEYG-VPFMETSAKTGLNVEL  153 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence            9999999999999999888765432    7899999999999754  4556677788887776 7999999999999999


Q ss_pred             HHHHHHHHHHhcCccccccCCcccccCCCCCCCCCCccC
Q 028647          168 AFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC  206 (206)
Q Consensus       168 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~~  206 (206)
                      +|++|.+.+.......+...+.......+...+.++| |
T Consensus       154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  191 (191)
T cd04112         154 AFTAVAKELKHRKYEQPDEGKFKISDYVTKQKKISRC-C  191 (191)
T ss_pred             HHHHHHHHHHHhccccCCCCcEEeccccCcccccCCC-C
Confidence            9999999999887665554444555667788899999 5

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.1e-35  Score=211.32  Aligned_cols=168  Identities=38%  Similarity=0.669  Sum_probs=149.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|..|+|||||+++|..+.|...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888899988888888899998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +.+..++.+++++...++.++++||++|.|++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~----~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~  154 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLDCETD--REISRQQGEKFAQQITGMRFCEASAKDNFNVDEI  154 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence            99999999999999887654432    27899999999999764  6677888888887764588999999999999999


Q ss_pred             HHHHHHHHHhcCcc
Q 028647          169 FQCIAKNALKSGEE  182 (206)
Q Consensus       169 ~~~l~~~~~~~~~~  182 (206)
                      |+++++.+.+..+.
T Consensus       155 F~~l~~~~~~~~~~  168 (202)
T cd04120         155 FLKLVDDILKKMPL  168 (202)
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999988775433

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-35  Score=200.53  Aligned_cols=173  Identities=38%  Similarity=0.654  Sum_probs=161.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..+.+|+.++|..|+|||.|+.+|+..+|.+.+..|.|.++-.+.+.++++.+++++|||+|++.+.+....+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      |+|||+++.++|..+..|+..+..+..+    +..+++++||+||...  +.++.++.+.|+++.+ ..++++||++++|
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~----NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg-LifmETSakt~~~  155 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNE----NMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG-LIFMETSAKTAEN  155 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCC----CcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC-ceeehhhhhhhhh
Confidence            9999999999999999999999877644    8899999999999887  7899999999999966 8899999999999


Q ss_pred             HHHHHHHHHHHHHhcCcccc
Q 028647          165 VEEAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~~~~  184 (206)
                      +++.|......++.....+-
T Consensus       156 VEEaF~nta~~Iy~~~q~g~  175 (216)
T KOG0098|consen  156 VEEAFINTAKEIYRKIQDGV  175 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            99999999999887665543

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=6.9e-35  Score=208.04  Aligned_cols=188  Identities=28%  Similarity=0.448  Sum_probs=157.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      +|+|+|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888877777776554 4456678888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF  169 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~  169 (206)
                      ++++.+++.+..|+..+...... ...+.|+++|+||+|+.+.  +....++..++...++ ++++++||++|.|++++|
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG-CEFIEASAKTNVNVERAF  155 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHH
Confidence            99999999999998888765432 1237899999999999764  4556667778887777 789999999999999999


Q ss_pred             HHHHHHHHhcCccccccCCcccccCCCCCCCCCCccC
Q 028647          170 QCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC  206 (206)
Q Consensus       170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~~  206 (206)
                      +++++.+......+.    ++......++.|+.+|||
T Consensus       156 ~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         156 YTLVRALRQQRQGGQ----GPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHHHHHhhcccC----CCcCCCCCcccccccCce
Confidence            999999887766653    335566777888888865

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=2e-34  Score=206.27  Aligned_cols=190  Identities=33%  Similarity=0.588  Sum_probs=158.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      +||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++++......+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999988874 5777777777777888899889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--cccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--SRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      ||++++.+++.+..|+..+.....     +.|+++|+||+|+....  .+....+++.++...++ ++++++||+++.|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv  154 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEE-----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTGQNV  154 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCC-----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            999999999998889888765322     78999999999986532  23445567777777776 78999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCCccC
Q 028647          166 EEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~~  206 (206)
                      +++|+++.+.+.+....+.... ..+.+.....++.+|| |
T Consensus       155 ~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~  193 (193)
T cd04118         155 DELFQKVAEDFVSRANNQMNTE-KGVDLGQKKNSYFYSC-C  193 (193)
T ss_pred             HHHHHHHHHHHHHhcccccCCC-CccccCCcCCCCCCCC-C
Confidence            9999999999987765543433 5566666777788889 5

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=2.2e-34  Score=208.14  Aligned_cols=171  Identities=34%  Similarity=0.658  Sum_probs=150.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      .+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999988888888888887777776 4567899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |||++++++++.+..|+..+......   ...|+++|+||.|+...  +....++..++++..+ .+++++|+++|.|++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~  155 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG-MKYIETSARTGDNVE  155 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc--cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHH
Confidence            99999999999999999988765433   25789999999999764  5677788888888887 899999999999999


Q ss_pred             HHHHHHHHHHHhcCcccc
Q 028647          167 EAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       167 ~l~~~l~~~~~~~~~~~~  184 (206)
                      ++|++|++.+.+..+..+
T Consensus       156 e~f~~l~~~~~~~~~~~~  173 (211)
T cd04111         156 EAFELLTQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHHHHHHHhhcCC
Confidence            999999999988876665

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3.4e-34  Score=208.02  Aligned_cols=169  Identities=38%  Similarity=0.679  Sum_probs=149.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999999888788888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||++++.+++.+..|+..+.....    .++|+++|+||+|+.+.  +....++...+....+ .+++++||++|.|+
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v  162 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL--RSVAEEDGQALAEKEG-LSFLETSALEATNV  162 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999988766543    27899999999999764  5566777888877765 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCc
Q 028647          166 EEAFQCIAKNALKSGE  181 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~  181 (206)
                      +++|+++++.+.+...
T Consensus       163 ~~lf~~l~~~i~~~~~  178 (216)
T PLN03110        163 EKAFQTILLEIYHIIS  178 (216)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998877433

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9e-35  Score=200.13  Aligned_cols=173  Identities=35%  Similarity=0.659  Sum_probs=162.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      .-++.|||+++|.+++|||-|+.+|....|.....+|.|..+....+.++++.+..+||||+||++|+.....+++.+.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|||++...+|+.+.+|+.++..+...    ++++++|+||+||.+.  +.+..++.+.++...+ ..++++||.++.
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~-l~f~EtSAl~~t  162 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG-LFFLETSALDAT  162 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHhHHHhcC-ceEEEecccccc
Confidence            99999999999999999999999888765    8999999999999885  8889999999998887 899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCccc
Q 028647          164 NVEEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~~~  183 (206)
                      |+++.|+.++..+++...+.
T Consensus       163 NVe~aF~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  163 NVEKAFERVLTEIYKIVSKK  182 (222)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            99999999998887654443

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=5.4e-34  Score=204.74  Aligned_cols=192  Identities=39%  Similarity=0.668  Sum_probs=159.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|+++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            35799999999999999999999999888788888888887888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++++++.+..|+..+.....     ..|+++|+||+|+.+.  .....++...+....+ .+++++|+++|.|+
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi  155 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER--KVVETEDAYKFAGQMG-ISLFETSAKENINV  155 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence            99999999999999999988765543     6899999999999764  4556777888887777 88999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccccCCc----ccccCCCCCCCCCCccC
Q 028647          166 EEAFQCIAKNALKSGEEEEIYLPD----TIDVGNSSQPRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~gc~~  206 (206)
                      +++|++|.+.++...........-    ...-.....+|++-| |
T Consensus       156 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  199 (199)
T cd04110         156 EEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRC-C  199 (199)
T ss_pred             HHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccC-C
Confidence            999999999998765544332111    122334445677778 5

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.5e-35  Score=192.51  Aligned_cols=167  Identities=45%  Similarity=0.765  Sum_probs=157.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++.+++|.+|+|||+|+.+|..+.|...|..++|.++..+++.+.+..++++|||++|++.|+.+...+++..++++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||.++.+||.+..+|++++...+.     .+|-++|+||.|.++.  +.+..++++.|+...+ +.++++|+++++|+
T Consensus        86 vVYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg-ie~FETSaKe~~Nv  157 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTEDARAFALQMG-IELFETSAKENENV  157 (198)
T ss_pred             EEEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHHHHHHHHhcC-chheehhhhhcccc
Confidence            99999999999999999999988876     7899999999999887  8889999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 028647          166 EEAFQCIAKNALKSG  180 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~  180 (206)
                      +..|.-|.+.++...
T Consensus       158 E~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  158 EAMFHCITKQVLQAK  172 (198)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999988887654

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=9.7e-34  Score=205.69  Aligned_cols=167  Identities=35%  Similarity=0.543  Sum_probs=147.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-eEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      +||+++|.+|+|||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888999999888888887765 568999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      ||++++++++.+..|+..+....... ..+.|+++|+||+|+.+.  +....++...+++.++ .+++++||++|+|+++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~-~~~~~iSAktg~gv~~  156 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG-MESCLVSAKTGDRVNL  156 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            99999999999999999887765422 125789999999999754  5677788888888877 7899999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028647          168 AFQCIAKNALKS  179 (206)
Q Consensus       168 l~~~l~~~~~~~  179 (206)
                      +|++|++.+...
T Consensus       157 lf~~l~~~l~~~  168 (215)
T cd04109         157 LFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.8e-34  Score=201.57  Aligned_cols=168  Identities=22%  Similarity=0.458  Sum_probs=147.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ++..++|+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            35578999999999999999999999999888888887665 45677899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCc
Q 028647           85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|||++++.+|+.+ ..|...+.....     +.|+++|+||+|+.+.          ..+.+..++++++++..+..+
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  155 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT  155 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence            999999999999997 789988876542     7899999999998642          225688899999999998558


Q ss_pred             EEEeeccCCCC-HHHHHHHHHHHHHh
Q 028647          154 YFETSAKEGIN-VEEAFQCIAKNALK  178 (206)
Q Consensus       154 ~~~~S~~~~~~-i~~l~~~l~~~~~~  178 (206)
                      |++|||++|.| ++++|+.+++.+++
T Consensus       156 ~~E~SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         156 YIECSALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             EEECCcCCCCCCHHHHHHHHHHHHhc
Confidence            99999999998 99999999997654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-34  Score=189.75  Aligned_cols=181  Identities=39%  Similarity=0.621  Sum_probs=169.1

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |++.-++.++++++|+.|+|||.|+++|+...+.+....+.+.++..+.+.+.++.++++||||+|+++|++..+.+++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +.+.++|||+++.++|+.+..|+........+    ++-+++++||.||.++  +++...+..+|++... ..++++|+.
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne-l~flETSa~  154 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSAL  154 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHhhhcccc-eeeeeeccc
Confidence            99999999999999999999999998776654    7889999999999887  8899999999999988 789999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCccccccCC
Q 028647          161 EGINVEEAFQCIAKNALKSGEEEEIYLP  188 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~~~~~~~~  188 (206)
                      +|+|+++.|-...+.++.+.+.++.+.+
T Consensus       155 TGeNVEEaFl~c~~tIl~kIE~GElDPe  182 (214)
T KOG0086|consen  155 TGENVEEAFLKCARTILNKIESGELDPE  182 (214)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhcCCCHH
Confidence            9999999999999999999988888643

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1e-33  Score=197.96  Aligned_cols=164  Identities=37%  Similarity=0.674  Sum_probs=145.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999998888888888888777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      ||++++++++.+..|+..+.....    ++.|+++|+||+|+...  +....+++.+++...+ .+++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e  154 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLEAQ--RDVTYEEAKQFADENG-LLFLECSAKTGENVED  154 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            999999999999999988765432    26899999999999765  5567788888888776 8999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028647          168 AFQCIAKNALK  178 (206)
Q Consensus       168 l~~~l~~~~~~  178 (206)
                      +|..+++.+++
T Consensus       155 ~f~~l~~~~~~  165 (166)
T cd04122         155 AFLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=6.4e-34  Score=205.78  Aligned_cols=187  Identities=35%  Similarity=0.609  Sum_probs=147.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+|+|.+|+|||||+++|..+.+.. ..++.+.++....+    ..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 46666655544332    4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------------CcccccHHHHHHHHHhcCC
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-----------------NSRVVSEKKARAWCASKGN  151 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~  151 (206)
                      |++++++|+.+..|+..+.....    .+.|+++|+||+|+.+.                 ..+.+..++++.+++..+.
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~----~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~  151 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTAN----EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK  151 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence            99999999999888777765422    27899999999999751                 1367788899999888652


Q ss_pred             -------------CcEEEeeccCCCCHHHHHHHHHHHHHhcCccccc---cCCcccccCCCCCCCCCCccC
Q 028647          152 -------------IPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI---YLPDTIDVGNSSQPRSSGCEC  206 (206)
Q Consensus       152 -------------~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gc~~  206 (206)
                                   .+|++|||++|.|++++|..+++.++....+...   ...-.+..+. .+.++++| |
T Consensus       152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~  220 (220)
T cd04126         152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPN-PKRSKSKC-C  220 (220)
T ss_pred             cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCC-cccCCCCC-C
Confidence                         5799999999999999999999887754433333   2233444444 35567889 5

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.1e-33  Score=200.17  Aligned_cols=170  Identities=48%  Similarity=0.774  Sum_probs=148.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988778888888887778888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+......    +.|+++|+||.|+.+.  .....++...++...+ ++++++||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~----~~~~ivv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~~~  153 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARE----NVIKVIVANKSDLVNN--KVVDSNIAKSFCDSLN-IPFFETSAKQSINVEEA  153 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECCCCccc--ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            999999999999999888765432    5799999999999765  4556677777777776 78999999999999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 028647          169 FQCIAKNALKSGEEEEI  185 (206)
Q Consensus       169 ~~~l~~~~~~~~~~~~~  185 (206)
                      |++|++.+.++....+.
T Consensus       154 f~~l~~~~~~~~~~~~~  170 (188)
T cd04125         154 FILLVKLIIKRLEEQEL  170 (188)
T ss_pred             HHHHHHHHHHHhhcCcC
Confidence            99999999876655543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.6e-33  Score=197.17  Aligned_cols=165  Identities=43%  Similarity=0.755  Sum_probs=147.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999988888988888877888888888999999999999998888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +....++...++...+ .+++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  154 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG-IKFLETSAKANINVE  154 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            9999999999999999998876532    27899999999999864  4556777888888776 789999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      ++|+++.+.+..
T Consensus       155 ~~~~~i~~~~~~  166 (167)
T cd01867         155 EAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.1e-33  Score=198.55  Aligned_cols=163  Identities=32%  Similarity=0.572  Sum_probs=143.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|.+|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++......+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888899887665 455678888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------cccccHHHHHHHHHhcCCCcEEEeec
Q 028647           89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--------SRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        89 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      |+++++||+.+ ..|+..+.....     ++|+++|+||+|+.+..        .+.+..++++.+++..+...+++|||
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  155 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS  155 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence            99999999998 689988865432     78999999999996542        13477889999999887346999999


Q ss_pred             cCCCCHHHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~  177 (206)
                      ++|.|++++|+.+++.++
T Consensus       156 k~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         156 KTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             CcccCHHHHHHHHHHHHh
Confidence            999999999999999764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3e-34  Score=189.47  Aligned_cols=181  Identities=37%  Similarity=0.673  Sum_probs=163.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      .-.+.+++.|+|.+-+|||+|++.|+.+++..-.+|+.|.++..+.+.. .+..+++++|||+|++++++..+.+++++-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            4467899999999999999999999999999999999999988777766 466789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|||+++.+||+.+..|+.+-....+  .+.++-+.+|++|+||...  ++++.+++++++...+ ..|+++|+++|
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg-M~FVETSak~g  158 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG-MAFVETSAKNG  158 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC-ceEEEecccCC
Confidence            99999999999999999999998877665  2324557899999999976  9999999999999887 99999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCccccccCCc
Q 028647          163 INVEEAFQCIAKNALKSGEEEEIYLPD  189 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~~~~~~~~~~  189 (206)
                      .|+++.|..|.+.+.....+++..++.
T Consensus       159 ~NVeEAF~mlaqeIf~~i~qGeik~ed  185 (213)
T KOG0091|consen  159 CNVEEAFDMLAQEIFQAIQQGEIKLED  185 (213)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCceeeee
Confidence            999999999999999999888776544

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.4e-33  Score=196.92  Aligned_cols=167  Identities=25%  Similarity=0.498  Sum_probs=145.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+|+|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998878888877555 44567888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      ||++++.+++.+..|...+......   .++|+++|+||+|+.+.  +....++...+++..+ ++++++||++|.|+++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~---~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~  154 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLT---EDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN-CPFFETSAALRHYIDD  154 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCC---CCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHH
Confidence            9999999999999887777654321   27899999999998765  5677788888888876 8999999999999999


Q ss_pred             HHHHHHHHHHhcCc
Q 028647          168 AFQCIAKNALKSGE  181 (206)
Q Consensus       168 l~~~l~~~~~~~~~  181 (206)
                      +|++|++.+.+..+
T Consensus       155 ~f~~l~~~~~~~~~  168 (172)
T cd04141         155 AFHGLVREIRRKES  168 (172)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998876444

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=3.3e-33  Score=199.39  Aligned_cols=165  Identities=25%  Similarity=0.518  Sum_probs=142.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+++|..|+|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            38999999999999999999999999888888887655 44567888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcEEE
Q 028647           88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      ||++++.+|+.+. .|...+....     .++|+++|+||.|+.+...          +.+..++++.+++..+.+++++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e  156 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE  156 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999996 5877665433     2789999999999975421          2356678888888887678999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHh
Q 028647          157 TSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +||++|.|++++|+++++.+..
T Consensus       157 ~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         157 CSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             eCCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998854

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=3.3e-33  Score=196.94  Aligned_cols=163  Identities=23%  Similarity=0.459  Sum_probs=143.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......+++++|++++||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            7899999999999999999999999888888887665 456778899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCcEEEe
Q 028647           89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |+++++||+.+ ..|...+.....     +.|+++|+||+|+.+.          ..+.+..++++++++..+..+++++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~-----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  155 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCP-----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC  155 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCC-----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence            99999999996 789888876542     7899999999999642          1245788899999999984489999


Q ss_pred             eccCCCC-HHHHHHHHHHHHH
Q 028647          158 SAKEGIN-VEEAFQCIAKNAL  177 (206)
Q Consensus       158 S~~~~~~-i~~l~~~l~~~~~  177 (206)
                      ||++|++ ++++|..+++..+
T Consensus       156 SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         156 SAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             ccCcCCcCHHHHHHHHHHHHh
Confidence            9999995 9999999999765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=7.4e-33  Score=193.43  Aligned_cols=163  Identities=38%  Similarity=0.708  Sum_probs=142.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++++|++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777777777778889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |.+++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +....++..++...++ .+++++||++|.|++++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  154 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSW----DNAQVILVGNKCDMEDE--RVVSSERGRQLADQLG-FEFFEASAKENINVKQV  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence            99999999999999988765432    26899999999999765  4455677777877776 78999999999999999


Q ss_pred             HHHHHHHHHh
Q 028647          169 FQCIAKNALK  178 (206)
Q Consensus       169 ~~~l~~~~~~  178 (206)
                      |+++++.+..
T Consensus       155 ~~~l~~~~~~  164 (165)
T cd01865         155 FERLVDIICD  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999987643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=5.5e-33  Score=196.71  Aligned_cols=167  Identities=44%  Similarity=0.723  Sum_probs=145.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC----------CeEEEEEEEeCCChhhhccchhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   76 (206)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+.          +..+.+.+||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56999999999999999999999999988888888877766666554          45688999999999999999999


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++++|++++|||+++++++..+..|+..+.....   .++.|+++|+||+|+.+.  +....++..+++..++ .++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e  156 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY---CENPDIVLCGNKADLEDQ--RQVSEEQAKALADKYG-IPYFE  156 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEeCccchhc--CccCHHHHHHHHHHcC-CeEEE
Confidence            99999999999999999999999999988865532   226799999999999765  5566778888988887 89999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhc
Q 028647          157 TSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +||++|.|++++|++|.+.++++
T Consensus       157 ~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         157 TSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999988654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=6.4e-33  Score=194.64  Aligned_cols=167  Identities=54%  Similarity=1.007  Sum_probs=147.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            45699999999999999999999999888877888887777778888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||++++++++.+..|...+..........++|+++|+||+|+..   +....+++++++..++..+++++||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  159 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENGDYPYFETSAKDATNV  159 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence            9999999999999999998887765443344789999999999873   5567788888988887668999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          166 EEAFQCIAKN  175 (206)
Q Consensus       166 ~~l~~~l~~~  175 (206)
                      +++|+++++.
T Consensus       160 ~~~~~~~~~~  169 (170)
T cd04116         160 AAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=6.7e-33  Score=201.56  Aligned_cols=171  Identities=20%  Similarity=0.386  Sum_probs=148.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      +....++|+++|.+|+|||||+++|..+.|...+.++.+..+ ...+.+++..+.+.||||+|++.+......+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            345678999999999999999999999999988899987766 4467788999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCC
Q 028647           84 CVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~  152 (206)
                      +++|||++++++|+.+ ..|+..+.....     +.|+++|+||+|+...          ..+.+..++++++++..+..
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~  162 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE  162 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence            9999999999999984 789888876542     6799999999998642          12567888999999999833


Q ss_pred             cEEEeeccCCC-CHHHHHHHHHHHHHhcC
Q 028647          153 PYFETSAKEGI-NVEEAFQCIAKNALKSG  180 (206)
Q Consensus       153 ~~~~~S~~~~~-~i~~l~~~l~~~~~~~~  180 (206)
                      .|++|||++|. |++++|..++..++++.
T Consensus       163 ~~~EtSAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         163 VYLECSAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             EEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence            79999999998 89999999999887753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=8.3e-33  Score=193.37  Aligned_cols=164  Identities=41%  Similarity=0.768  Sum_probs=145.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999988888888888888888888888888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|+++++++..+..|+..+.....    ++.|+++|+||.|+...  .....++...++...+ ++++++|+++|.|+++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  154 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTDK--RVVDYSEAQEFADELG-IPFLETSAKNATNVEQ  154 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCcCHHH
Confidence            999999999999999988865542    27899999999998765  4566777888888776 8999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028647          168 AFQCIAKNALK  178 (206)
Q Consensus       168 l~~~l~~~~~~  178 (206)
                      +|++|.+.+..
T Consensus       155 ~~~~i~~~~~~  165 (166)
T cd01869         155 AFMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-34  Score=184.01  Aligned_cols=170  Identities=37%  Similarity=0.678  Sum_probs=158.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++++++|...+|||||+.++.++.+.....++.|.++..+++....+.+.+++|||.|+++++.+...++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            56789999999999999999999999999999999999999999888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      ++||.++.+||..++.|...+......    +.|+|+|+||+|+..+  +.+..|.++.++.+++ ..++++|++.+.|+
T Consensus        99 LmyDitNeeSf~svqdw~tqIktysw~----naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG-fefFEtSaK~NinV  171 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYSWD----NAQVILVGNKCDMDSE--RVISHERGRQLADQLG-FEFFETSAKENINV  171 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeeecc----CceEEEEecccCCccc--eeeeHHHHHHHHHHhC-hHHhhhcccccccH
Confidence            999999999999999999998777554    8999999999999877  8999999999999998 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCcc
Q 028647          166 EEAFQCIAKNALKSGEE  182 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~  182 (206)
                      +.+|+.++..+-....+
T Consensus       172 k~~Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  172 KQVFERLVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999988665443

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=5.5e-33  Score=198.08  Aligned_cols=169  Identities=34%  Similarity=0.594  Sum_probs=145.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            459999999999999999999999988877778776655 5667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++++++.+..|...+.....   ..++|+++|+||+|+.+.  +....++...+...++ .+++++||++|.|++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi~  156 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKD---KDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG-IPFLETSAKQRVNVD  156 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC-CEEEEeeCCCCCCHH
Confidence            9999999999999999988876533   227899999999998754  4555667777777776 789999999999999


Q ss_pred             HHHHHHHHHHHhcCcc
Q 028647          167 EAFQCIAKNALKSGEE  182 (206)
Q Consensus       167 ~l~~~l~~~~~~~~~~  182 (206)
                      ++|++|++.+.+..++
T Consensus       157 ~~~~~l~~~l~~~~~~  172 (189)
T PTZ00369        157 EAFYELVREIRKYLKE  172 (189)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999998765443

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=8.7e-33  Score=193.08  Aligned_cols=163  Identities=39%  Similarity=0.658  Sum_probs=143.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988888888888877877888888888899999999999999989999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++.+++.+..|+..+.....    .++|+++|+||+|+.+.  +....++...+++..+...++++|+++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  155 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGA----SNVVLLLIGNKCDLEEQ--REVLFEEACTLAEKNGMLAVLETSAKESQNVE  155 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence            9999999999999999998866432    27899999999999765  45667778888888775679999999999999


Q ss_pred             HHHHHHHHH
Q 028647          167 EAFQCIAKN  175 (206)
Q Consensus       167 ~l~~~l~~~  175 (206)
                      ++++++.+.
T Consensus       156 ~~~~~l~~~  164 (165)
T cd01864         156 EAFLLMATE  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=7.6e-33  Score=192.54  Aligned_cols=160  Identities=33%  Similarity=0.633  Sum_probs=143.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+.....    .+.|+++|+||.|+.+.  +....++...+++.++ .+++++||++|.|++++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  153 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG-MDFFETSACTNSNIKES  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence            99999999999999988865532    26899999999999765  5566788888888877 88999999999999999


Q ss_pred             HHHHHHH
Q 028647          169 FQCIAKN  175 (206)
Q Consensus       169 ~~~l~~~  175 (206)
                      |.+|.+.
T Consensus       154 f~~l~~~  160 (161)
T cd04117         154 FTRLTEL  160 (161)
T ss_pred             HHHHHhh
Confidence            9999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.2e-32  Score=192.29  Aligned_cols=163  Identities=39%  Similarity=0.741  Sum_probs=145.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+..+......+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            35899999999999999999999999888888898888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++.+++.+..|+..+......    +.|+++|+||.|+...  +....++...++...+ .+++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  154 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTEEAKAFAEKNG-LSFIETSALDGTNVE  154 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence            99999999999999999988766532    6899999999999765  5566777888887765 889999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          167 EAFQCIAKNA  176 (206)
Q Consensus       167 ~l~~~l~~~~  176 (206)
                      +++++|++.+
T Consensus       155 ~l~~~l~~~i  164 (165)
T cd01868         155 EAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.1e-32  Score=192.96  Aligned_cols=166  Identities=36%  Similarity=0.671  Sum_probs=146.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+......+++.+|++++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899888888888888898999999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCC-CCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPS-DPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      |++++.+++.+..|+..+....... ...+.|+++|+||+|+.+.  +....++.+.++...+ .+++++||++|.|+++
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  157 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESKG-FKYFETSACTGEGVNE  157 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence            9999999999999999887765421 1126899999999999753  4566777777887776 8899999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          168 AFQCIAKNAL  177 (206)
Q Consensus       168 l~~~l~~~~~  177 (206)
                      ++++|++.++
T Consensus       158 l~~~l~~~l~  167 (168)
T cd04119         158 MFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.5e-32  Score=192.48  Aligned_cols=165  Identities=35%  Similarity=0.629  Sum_probs=144.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      +|+++|.+|||||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998999999888888888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF  169 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~  169 (206)
                      ++++++++.+..|+..++.....   ...|+++|+||.|+.+........++...+...++ .+++++||++|.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCCHHHHH
Confidence            99999999999999988655332   15689999999999765333345666777777776 789999999999999999


Q ss_pred             HHHHHHHHh
Q 028647          170 QCIAKNALK  178 (206)
Q Consensus       170 ~~l~~~~~~  178 (206)
                      +.|++.+.+
T Consensus       158 ~~l~~~~~~  166 (170)
T cd04108         158 FRVAALTFE  166 (170)
T ss_pred             HHHHHHHHH
Confidence            999998854

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=6.5e-33  Score=195.22  Aligned_cols=162  Identities=27%  Similarity=0.487  Sum_probs=139.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            78999999999999999999999998888888876653 45677888899999999999999988888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|+..+....     +++|+++|+||+|+.+..          .+.+..++++++++..+.+.++++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~  155 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC  155 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence            999999999986 5877775543     278999999999986542          145677888888888876789999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~  176 (206)
                      ||++|.|++++|+.++..+
T Consensus       156 SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         156 SALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             cCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=197.02  Aligned_cols=169  Identities=38%  Similarity=0.661  Sum_probs=149.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.++|+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45699999999999999999999999888888888888887778888888889999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +....++.+++++..+ ++++++|++++.|+
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v  156 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQNV  156 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999899887765432    27899999999999765  5567788888888876 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCc
Q 028647          166 EEAFQCIAKNALKSGE  181 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~  181 (206)
                      +++|+++++.+++...
T Consensus       157 ~e~f~~l~~~~~~~~~  172 (210)
T PLN03108        157 EEAFIKTAAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987543

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-33  Score=182.85  Aligned_cols=175  Identities=36%  Similarity=0.624  Sum_probs=160.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      .-+..++|+++|..|+|||.|+++|..+-|++....+.+.++-.+++.+.+..++++||||+|+++|++....+++.+|+
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +|+|+|++...+|+-+..|+.++......    ++--|+|+||+|+.+.  +++..+..++|..... ..|+++||++-+
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~qigeefs~~qd-myfletsakea~  155 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQIGEEFSEAQD-MYFLETSAKEAD  155 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-hhhhhhcccchh
Confidence            99999999999999999999999988765    5667999999999876  7888888899988755 889999999999


Q ss_pred             CHHHHHHHHHHHHHhcCccccc
Q 028647          164 NVEEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~~~~~  185 (206)
                      |+++||..+.-.+.......+.
T Consensus       156 nve~lf~~~a~rli~~ar~~d~  177 (213)
T KOG0095|consen  156 NVEKLFLDLACRLISEARQNDL  177 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999888776665554

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.5e-32  Score=194.38  Aligned_cols=164  Identities=26%  Similarity=0.494  Sum_probs=141.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|.+|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999998888888889998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---cccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN---SRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      |++++++++.+..|+..+.....    ...| ++|+||+|+....   ......++.+++++..+ ++++++||++|.|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~----~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v  154 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNK----TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSINV  154 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999998866432    1456 6789999996321   11223466777887777 88999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028647          166 EEAFQCIAKNALK  178 (206)
Q Consensus       166 ~~l~~~l~~~~~~  178 (206)
                      +++|+++++.++.
T Consensus       155 ~~lf~~l~~~l~~  167 (182)
T cd04128         155 QKIFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.5e-32  Score=197.64  Aligned_cols=171  Identities=20%  Similarity=0.449  Sum_probs=145.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+......+++++|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999889999876664 56778899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|...+....     ++.|+++|+||+|+..+.          ...+..++.+.+++..+..+|++|
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~  155 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC  155 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence            999999999985 5665554332     278999999999996531          123677889999999986699999


Q ss_pred             eccCCCC-HHHHHHHHHHHHHhcCccccc
Q 028647          158 SAKEGIN-VEEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       158 S~~~~~~-i~~l~~~l~~~~~~~~~~~~~  185 (206)
                      ||+++.+ ++++|+.+....+.+.+....
T Consensus       156 SAk~~~~~V~~~F~~~~~~~~~~~~~~~~  184 (222)
T cd04173         156 SSRSSERSVRDVFHVATVASLGRGHRQLR  184 (222)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHhccCCccc
Confidence            9999985 999999999988876554333

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=4.4e-32  Score=196.59  Aligned_cols=171  Identities=35%  Similarity=0.613  Sum_probs=142.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..+..++|+|+|.+|+|||||+++|....+. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            4466799999999999999999999988764 567777777777778888888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           84 CVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      +++|||++++++++.+.. |...+.....   ..+.|+++|+||+|+...  +....++...+....+ ..++++||+++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~SAk~~  162 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE--RDVSREEGMALAKEHG-CLFLECSAKTR  162 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence            999999999999999876 4444432221   126799999999999765  4455667777777766 78999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCc
Q 028647          163 INVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~~  181 (206)
                      .|++++|++|.+.+.....
T Consensus       163 ~~v~~l~~~l~~~~~~~~~  181 (211)
T PLN03118        163 ENVEQCFEELALKIMEVPS  181 (211)
T ss_pred             CCHHHHHHHHHHHHHhhhh
Confidence            9999999999999977654

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.5e-32  Score=191.38  Aligned_cols=161  Identities=37%  Similarity=0.648  Sum_probs=139.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|.+|||||||++++..+.+...+.++.+ +.+...+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777777765 344566778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++.+++.+..|...+......   .+.|+++|+||+|+.+.  +....++...+...++ .+++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  154 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDT---ENVPMVLVGNKCDLEDE--RVVSREEGQALARQWG-CPFYETSAKSKINVDEV  154 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence            999999999999998888765332   37899999999999764  4556667777877777 89999999999999999


Q ss_pred             HHHHHHHH
Q 028647          169 FQCIAKNA  176 (206)
Q Consensus       169 ~~~l~~~~  176 (206)
                      |+++.+.+
T Consensus       155 ~~~l~~~~  162 (163)
T cd04136         155 FADLVRQI  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1.8e-32  Score=195.25  Aligned_cols=169  Identities=32%  Similarity=0.546  Sum_probs=140.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      ++|+|+|++|+|||||+++|..+.+...+.++.+.++.. .+... +..+.+.+|||+|++.+......+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            489999999999999999999999887777777666533 45554 6778999999999999998888899999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--cccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--SRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      +|++++++++.+. .|+..+....     ++.|+++|+||.|+....  .+....++.++++..++..+++++||++|.|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            9999999999986 4776665432     278999999999996542  2345677888888888744899999999999


Q ss_pred             HHHHHHHHHHHHHhcCccc
Q 028647          165 VEEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~~~  183 (206)
                      ++++|+.+++.++......
T Consensus       155 v~~~f~~l~~~~~~~~~~~  173 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhh
Confidence            9999999999998655444

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=3.8e-32  Score=190.34  Aligned_cols=165  Identities=39%  Similarity=0.697  Sum_probs=146.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+|+|.+|+|||||++++.+..+...+.++.+.++....+..++....+.+||++|++++......+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999998888888888888877888888888899999999999999988999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++++++.+..|+..+.....    +++|+++|+||.|+.+.  .....++...++...+ ..++++|++++.|++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~  155 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSN----SNMTIMLIGNKCDLESR--REVSYEEGEAFAKEHG-LIFMETSAKTASNVE  155 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            9999999999999999988876542    27899999999999754  4566777888887776 889999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      ++|.++.+.+++
T Consensus       156 ~~~~~~~~~~~~  167 (168)
T cd01866         156 EAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.2e-32  Score=198.80  Aligned_cols=165  Identities=29%  Similarity=0.581  Sum_probs=144.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            66799999999999999999999999988888999988888878878888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||++++++++.+..|+..+.....     ++|+++|+||+|+...   ....+++ .+....+ .+++++||++|.|+
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~---~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i  160 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNR---QVKAKQV-TFHRKKN-LQYYEISAKSNYNF  160 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhhhhc---cCCHHHH-HHHHhcC-CEEEEcCCCCCCCH
Confidence            99999999999999999998876542     7899999999999642   2333444 5555555 88999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 028647          166 EEAFQCIAKNALKSG  180 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~  180 (206)
                      +++|++|++.+.+..
T Consensus       161 ~~~f~~l~~~~~~~~  175 (219)
T PLN03071        161 EKPFLYLARKLAGDP  175 (219)
T ss_pred             HHHHHHHHHHHHcCc
Confidence            999999999997654

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.8e-32  Score=190.34  Aligned_cols=163  Identities=32%  Similarity=0.589  Sum_probs=140.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      +++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998888777777776555 45677888888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      ||.+++.+++.+..|+..+.....   ..+.|+++|+||+|+.+.  .....++...+++.++ ++++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  153 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWG-CAFLETSAKAKINVNE  153 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc--cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHH
Confidence            999999999999999888876532   227899999999999765  4455666777777776 8999999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          168 AFQCIAKNAL  177 (206)
Q Consensus       168 l~~~l~~~~~  177 (206)
                      +|.++.+.+.
T Consensus       154 ~~~~l~~~l~  163 (164)
T cd04175         154 IFYDLVRQIN  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998663

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=7.8e-32  Score=189.38  Aligned_cols=170  Identities=81%  Similarity=1.276  Sum_probs=148.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|++|||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++++++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777888887887778888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++....|...+..........++|+++|+||+|+...  .....++...+....+..+++++|+++|.|++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            99999999999888888777766554557899999999999753  4455677777877776689999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 028647          169 FQCIAKNALKSG  180 (206)
Q Consensus       169 ~~~l~~~~~~~~  180 (206)
                      ++++.+.+.+..
T Consensus       159 ~~~i~~~~~~~~  170 (172)
T cd01862         159 FETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHHhcc
Confidence            999999987753

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=5e-32  Score=188.63  Aligned_cols=159  Identities=37%  Similarity=0.751  Sum_probs=139.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC--CeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ++|+++|.+|+|||||+++|..+.+...+.++.+.++....+.+.  +..+.+.+||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            489999999999999999999998888888888888776777676  777899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++++++.+..|+..+.....     ++|+++|+||.|+...  .....++...+...++ .+++++|+++|.|++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  152 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-----DIPMVLVQTKIDLLDQ--AVITNEEAEALAKRLQ-LPLFRTSVKDDFNVT  152 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence            9999999999999999988765443     7899999999999765  4456677888888876 799999999999999


Q ss_pred             HHHHHHHHH
Q 028647          167 EAFQCIAKN  175 (206)
Q Consensus       167 ~l~~~l~~~  175 (206)
                      +++++|.+.
T Consensus       153 ~l~~~l~~~  161 (162)
T cd04106         153 ELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999999753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=7.4e-32  Score=187.61  Aligned_cols=161  Identities=34%  Similarity=0.624  Sum_probs=137.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|.+|+|||||++++....+.+.+.++.+.+.......+++..+.+.+||++|++.+...+..+++++|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777777776776777778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++.+++.+..|+..+.....     +.|+++|+||+|+.+.     ..++...+....+ ++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-----~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  149 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-----EIPCIVVANKIDLDPS-----VTQKKFNFAEKHN-LPLYYVSAADGTNVVKL  149 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEECccCchh-----HHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            99999999999999988865432     6899999999998532     1234445555555 88999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 028647          169 FQCIAKNALKSG  180 (206)
Q Consensus       169 ~~~l~~~~~~~~  180 (206)
                      |+.+++.+++++
T Consensus       150 ~~~l~~~~~~~~  161 (161)
T cd04124         150 FQDAIKLAVSYK  161 (161)
T ss_pred             HHHHHHHHHhcC
Confidence            999999887753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=5.1e-32  Score=188.45  Aligned_cols=160  Identities=41%  Similarity=0.678  Sum_probs=142.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888887788888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |+++++++..+..|+..+.....    ++.|+++|+||.|+.+.  .....++...+....+ ..++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~  153 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALAS----PNIVVILVGNKSDLADQ--REVTFLEASRFAQENG-LLFLETSALTGENVEEA  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcchh--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence            99999999999999887765432    27899999999999764  5567788888888887 89999999999999999


Q ss_pred             HHHHHHH
Q 028647          169 FQCIAKN  175 (206)
Q Consensus       169 ~~~l~~~  175 (206)
                      |+++++.
T Consensus       154 ~~~~~~~  160 (161)
T cd04113         154 FLKCARS  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1e-31  Score=187.32  Aligned_cols=163  Identities=50%  Similarity=0.869  Sum_probs=144.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++.+++.+..|+..+......    ++|+++|+||+|+...  +....+...+++...+ ++++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~----~~pivvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~l  153 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADP----NVVIMLVGNKSDLEDQ--RQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEEchhcccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            999999999999999888766532    7899999999998764  4556777788887776 88999999999999999


Q ss_pred             HHHHHHHHHh
Q 028647          169 FQCIAKNALK  178 (206)
Q Consensus       169 ~~~l~~~~~~  178 (206)
                      +++|.+.+.+
T Consensus       154 ~~~i~~~~~~  163 (164)
T smart00175      154 FEELAREILK  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

Rab GTPases are implicated in vesicle trafficking.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=6.2e-32  Score=188.19  Aligned_cols=161  Identities=45%  Similarity=0.802  Sum_probs=150.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      ||+|+|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||++|++.+......+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998889999999999999999999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF  169 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~  169 (206)
                      +++++|++.+..|+..+......    +.|+++++||.|+.+.  +.+..+++++++..++ .+++++|++++.|+.++|
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~----~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f  153 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPE----DIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF  153 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTT----TSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred             ccccccccccccccccccccccc----cccceeeecccccccc--ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence            99999999999999999888762    6899999999999874  6778889999999998 999999999999999999


Q ss_pred             HHHHHHHH
Q 028647          170 QCIAKNAL  177 (206)
Q Consensus       170 ~~l~~~~~  177 (206)
                      ..+++.++
T Consensus       154 ~~~i~~i~  161 (162)
T PF00071_consen  154 QELIRKIL  161 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=6.2e-32  Score=190.04  Aligned_cols=161  Identities=26%  Similarity=0.488  Sum_probs=137.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+|+|.+|+|||||+.++..+.+...+.++.+. .+...+.+++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999999888888888754 33456677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|+..+....     ++.|+++|+||+|+.+..          .+.+..+++++++..++..+++++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  155 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  155 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999985 5777665432     278999999999996532          134678888999998886699999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~  175 (206)
                      ||++|.|++++|+.+++.
T Consensus       156 Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         156 SALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cccccCCHHHHHHHHHHh
Confidence            999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=5.9e-32  Score=193.48  Aligned_cols=175  Identities=25%  Similarity=0.386  Sum_probs=141.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc--------chhhhhcc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   80 (206)
                      ++|+|+|.+|||||||+++|..+.+...+.++.+.+.+...+.+++..+.+.+|||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999998888888887776666777888888999999999654321        12344688


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|||++++++++.+..|...+...... ...++|+++|+||+|+...  +....++.+++.....+++++++||+
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~-~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak  157 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA-GNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRKSWKCGYLECSAK  157 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEEECcccccc--ccccHHHHHHHHHHhcCCcEEEecCC
Confidence            99999999999999999999998888766421 1237899999999999764  44556666666554434899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCcccccc
Q 028647          161 EGINVEEAFQCIAKNALKSGEEEEIY  186 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~~~~~~  186 (206)
                      +|.|++++|+.+++.++.+.+.....
T Consensus       158 ~g~~v~~lf~~i~~~~~~~~~~~~~~  183 (198)
T cd04142         158 YNWHILLLFKELLISATTRGRSTHPA  183 (198)
T ss_pred             CCCCHHHHHHHHHHHhhccCCCccHH
Confidence            99999999999999998877765443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.2e-31  Score=187.35  Aligned_cols=160  Identities=32%  Similarity=0.670  Sum_probs=137.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+......++..+|++|+|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888778888887777777777888899999999999998888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+.....     ++|+++|+||+|+.+.   ... .+..++.... ..+++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~---~~~-~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~  150 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR---KVK-AKQITFHRKK-NLQYYEISAKSNYNFEKP  150 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc---cCC-HHHHHHHHHc-CCEEEEEeCCCCCChHHH
Confidence            99999999999999998877654     7899999999999743   222 2334455444 488999999999999999


Q ss_pred             HHHHHHHHHh
Q 028647          169 FQCIAKNALK  178 (206)
Q Consensus       169 ~~~l~~~~~~  178 (206)
                      |++|.+.++.
T Consensus       151 f~~l~~~~~~  160 (166)
T cd00877         151 FLWLARKLLG  160 (166)
T ss_pred             HHHHHHHHHh
Confidence            9999999865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1e-31  Score=187.49  Aligned_cols=162  Identities=35%  Similarity=0.648  Sum_probs=138.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+|+|++|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++++...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888877777765433 556667888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|...+.......   +.|+++|+||+|+...  +....++...+...++ .+++++||++|.|++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~---~~pii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l  153 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRD---DVPIVLVGNKCDLESE--RVVSTEEGKELARQWG-CPFLETSAKERVNVDEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence            9999999999999888776654322   6899999999999764  4556677777887776 89999999999999999


Q ss_pred             HHHHHHHHH
Q 028647          169 FQCIAKNAL  177 (206)
Q Consensus       169 ~~~l~~~~~  177 (206)
                      |++|++.+.
T Consensus       154 ~~~l~~~~~  162 (164)
T smart00173      154 FYDLVREIR  162 (164)
T ss_pred             HHHHHHHHh
Confidence            999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.3e-31  Score=190.99  Aligned_cols=166  Identities=30%  Similarity=0.487  Sum_probs=139.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      .+|+++|++|+|||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3799999999999999999999998887788876665 345667788889999999999999888888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc----------cccHHHHHHHHHhcCCCcEEEe
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----------VVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|+..+.....     +.|+++|+||+|+.+....          ....++...++...+.++++++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~-----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCP-----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC  154 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence            999999999886 58877765432     7899999999999764211          2455667778777776789999


Q ss_pred             eccCCCCHHHHHHHHHHHHHhcC
Q 028647          158 SAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ||++|.|++++|++|++.++...
T Consensus       155 SAk~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         155 SAKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             cCCcCCCHHHHHHHHHHHHhccc
Confidence            99999999999999999987433

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.9e-31  Score=185.52  Aligned_cols=160  Identities=35%  Similarity=0.625  Sum_probs=137.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|+
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            7899999999999999999999888877777776554 555677888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++.+++.+..|...+......   .+.|+++|+||+|+.+   +....++..++....+ .+++++||++|.|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  153 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVSSRQGQDLAKSYG-IPYIETSAKTRQGVEEA  153 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc---ceecHHHHHHHHHHhC-CeEEEecCCCCCCHHHH
Confidence            999999999998888888765432   2789999999999976   3455667777777776 78999999999999999


Q ss_pred             HHHHHHHH
Q 028647          169 FQCIAKNA  176 (206)
Q Consensus       169 ~~~l~~~~  176 (206)
                      |+++++.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04138         154 FYTLVREI  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2.3e-31  Score=185.65  Aligned_cols=162  Identities=32%  Similarity=0.607  Sum_probs=138.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||+.++...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999999887767677666444 45566788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|++++.+++.+..|...+......   .+.|+++|+||+|+...  +....++..+++...+ .+++++||++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  154 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ--RKVSREEGQELARKLK-IPYIETSAKDRLNVDK  154 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc--ceecHHHHHHHHHHcC-CcEEEeeCCCCCCHHH
Confidence            9999999999999998888765332   27899999999999765  4456667778887776 7999999999999999


Q ss_pred             HHHHHHHHH
Q 028647          168 AFQCIAKNA  176 (206)
Q Consensus       168 l~~~l~~~~  176 (206)
                      +|++|++.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04145         155 AFHDLVRVI  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.5e-31  Score=186.49  Aligned_cols=161  Identities=33%  Similarity=0.593  Sum_probs=137.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+||++|++.+...+..+++++|++++|+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999988877777664 445567778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|...+......   .++|+++|+||+|+.+.  .....++...+...++ .+++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  154 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE--REVSSAEGRALAEEWG-CPFMETSAKSKTMVNEL  154 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHH
Confidence            999999999999998888765322   27899999999998754  4455566677777776 78999999999999999


Q ss_pred             HHHHHHHH
Q 028647          169 FQCIAKNA  176 (206)
Q Consensus       169 ~~~l~~~~  176 (206)
                      |.++.+.+
T Consensus       155 ~~~l~~~l  162 (163)
T cd04176         155 FAEIVRQM  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=2.7e-31  Score=186.36  Aligned_cols=163  Identities=38%  Similarity=0.683  Sum_probs=142.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-cchhhhhccCcEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~   86 (206)
                      .++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999998887888888888888888889988999999999998886 467788899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC---CC
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE---GI  163 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~  163 (206)
                      |||++++++++.+..|+..+......   .++|+++|+||+|+.+.  +....++..+++.... .+++++||++   +.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~  155 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ--IQVPTDLAQRFADAHS-MPLFETSAKDPSEND  155 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh--cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence            99999999999999999888765432   27899999999998765  5566777888887776 8999999999   88


Q ss_pred             CHHHHHHHHHHHH
Q 028647          164 NVEEAFQCIAKNA  176 (206)
Q Consensus       164 ~i~~l~~~l~~~~  176 (206)
                      +++++|..+++.+
T Consensus       156 ~i~~~f~~l~~~~  168 (170)
T cd04115         156 HVEAIFMTLAHKL  168 (170)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998865

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2.3e-31  Score=185.07  Aligned_cols=160  Identities=41%  Similarity=0.687  Sum_probs=141.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+......    +.|+++++||+|+.+.  .....++...+....+ ++++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  153 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGN----DVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL  153 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCC----CCEEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence            999999999999998887654321    6899999999999644  5566777777777776 88999999999999999


Q ss_pred             HHHHHHH
Q 028647          169 FQCIAKN  175 (206)
Q Consensus       169 ~~~l~~~  175 (206)
                      +++|.+.
T Consensus       154 ~~~i~~~  160 (161)
T cd01861         154 FRKIASA  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=180.96  Aligned_cols=175  Identities=37%  Similarity=0.661  Sum_probs=161.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      +...|+|+++|..=+|||||+-+++..+|...+.++.-..+..+.+.+.+....+.||||+|+++|..+-.-+++.++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            35679999999999999999999999999988888888888899999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|||+++.+||+.+..|..++...+..    .+-++||+||+||.+.  +.++.++...++...+ +.++++||+++.|
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG-A~y~eTSAk~N~G  162 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG-ALYMETSAKDNVG  162 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc-hhheecccccccC
Confidence            9999999999999999999999888764    5779999999999877  8899999999999998 8899999999999


Q ss_pred             HHHHHHHHHHHHHhcCcccccc
Q 028647          165 VEEAFQCIAKNALKSGEEEEIY  186 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~~~~~~  186 (206)
                      |.++|+.|...+++...+.+..
T Consensus       163 i~elFe~Lt~~MiE~~s~~qr~  184 (218)
T KOG0088|consen  163 ISELFESLTAKMIEHSSQRQRT  184 (218)
T ss_pred             HHHHHHHHHHHHHHHhhhcccc
Confidence            9999999999998887655543

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=4.9e-31  Score=183.80  Aligned_cols=162  Identities=44%  Similarity=0.761  Sum_probs=143.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+|+|++|+|||||++++.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998877888888878788888999889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|++++++++....|+..+.....    ...|+++++||+|+...  .....++...++...+ .+++++|+++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  153 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK--RQVSTEEAQEYADENG-LLFFETSAKTGENVNE  153 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            999999999999999888876543    27899999999998754  4456677778888777 8899999999999999


Q ss_pred             HHHHHHHHH
Q 028647          168 AFQCIAKNA  176 (206)
Q Consensus       168 l~~~l~~~~  176 (206)
                      ++++|++.+
T Consensus       154 l~~~l~~~l  162 (163)
T cd01860         154 LFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHh
Confidence            999999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=4.9e-31  Score=184.20  Aligned_cols=162  Identities=30%  Similarity=0.452  Sum_probs=134.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|.+|+|||||++++.++.+...+.++.+..+ ......+...+.+.+||++|++.+......+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999988777777765444 445556777789999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+...... ..+++|+++|+||+|+.+.  +....++...++..++ .+++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v~~~  156 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSNEGAACATEWN-CAFMETSAKTNHNVQEL  156 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHHHHHHHHHHhC-CcEEEeecCCCCCHHHH
Confidence            999999999999888766654322 1237899999999999764  4455666777777766 78999999999999999


Q ss_pred             HHHHHHH
Q 028647          169 FQCIAKN  175 (206)
Q Consensus       169 ~~~l~~~  175 (206)
                      |++|++.
T Consensus       157 f~~l~~~  163 (165)
T cd04140         157 FQELLNL  163 (165)
T ss_pred             HHHHHhc
Confidence            9999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=8.7e-31  Score=192.93  Aligned_cols=166  Identities=30%  Similarity=0.508  Sum_probs=139.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.||||+|++.+......++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988877777765 455667788888899999999999988888788889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCC-----CCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASP-----SDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~-----~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      |++++++|+.+..|+..+......     ....+.|+++|+||+|+...  +.+..+++.++......+.++++||++|.
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~~~~~~~~~~evSAktg~  157 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLVGGDENCAYFEVSAKKNS  157 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            999999999999998888754221     12237899999999999753  44667777777665445789999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028647          164 NVEEAFQCIAKNAL  177 (206)
Q Consensus       164 ~i~~l~~~l~~~~~  177 (206)
                      |++++|++|++.+.
T Consensus       158 gI~elf~~L~~~~~  171 (247)
T cd04143         158 NLDEMFRALFSLAK  171 (247)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998763

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=6.3e-31  Score=184.18  Aligned_cols=164  Identities=25%  Similarity=0.381  Sum_probs=137.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ++.++|+++|.+|+|||||+++|.++.+. ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999988 78888888888777788888888899999999999988888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+..      ..++|+++|+||+|+.+.  .....++..++...++...++++||++|.|
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQ--QQRYEVQPDEFCRKLGLPPPLHFSSKLGDS  153 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEccccccc--ccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence            999999999999988787765421      126899999999999654  323334455666666633579999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028647          165 VEEAFQCIAKNAL  177 (206)
Q Consensus       165 i~~l~~~l~~~~~  177 (206)
                      ++++|+.+++.+.
T Consensus       154 v~~lf~~l~~~~~  166 (169)
T cd01892         154 SNELFTKLATAAQ  166 (169)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=7.1e-31  Score=184.91  Aligned_cols=162  Identities=29%  Similarity=0.555  Sum_probs=137.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEEC
Q 028647           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV   90 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (206)
                      |+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+|||+|++.+......+++.+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999998877777765544 45667788888999999999999998888899999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEeec
Q 028647           91 NSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        91 ~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      +++++++.+. .|+..+.....     +.|+++|+||+|+....          ...+..++..+++...+..+++++||
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  154 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA  154 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence            9999999985 58877765432     78999999999997532          12366777888988888568999999


Q ss_pred             cCCCCHHHHHHHHHHHHHh
Q 028647          160 KEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~  178 (206)
                      ++|.|++++|+.+++.+++
T Consensus       155 ~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      155 LTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CCCCCHHHHHHHHHHHhcC
Confidence            9999999999999998754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=1.5e-30  Score=181.07  Aligned_cols=160  Identities=38%  Similarity=0.695  Sum_probs=139.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777888888887777778888889999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++.+++.+..|+..+......   .+.|+++|+||+|+..   .....++..++....+ .+++++|+++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~~~~iv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~  153 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTN---NDIVKMLVGNKIDKEN---REVTREEGLKFARKHN-MLFIETSAKTRDGVQQA  153 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCC---CCCcEEEEEECCcccc---cccCHHHHHHHHHHcC-CEEEEEecCCCCCHHHH
Confidence            999999999999998888766542   2789999999999974   3445667777877775 89999999999999999


Q ss_pred             HHHHHHH
Q 028647          169 FQCIAKN  175 (206)
Q Consensus       169 ~~~l~~~  175 (206)
                      ++.+++.
T Consensus       154 ~~~~~~~  160 (161)
T cd01863         154 FEELVEK  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.6e-30  Score=182.20  Aligned_cols=163  Identities=35%  Similarity=0.630  Sum_probs=140.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            7899999999999999999999988777777776544 566778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |.+++++++....|...+.....   ..+.|+++++||.|+.+.  +....++...+.+.++..+++++||+++.|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~  155 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKD---SDNVPMVLVGNKADLEDD--RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV  155 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC---CCCCCEEEEEEChhcccc--CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence            99999999999999888876432   227899999999999764  4556667777777776688999999999999999


Q ss_pred             HHHHHHHHH
Q 028647          169 FQCIAKNAL  177 (206)
Q Consensus       169 ~~~l~~~~~  177 (206)
                      |+++...++
T Consensus       156 f~~i~~~~~  164 (168)
T cd04177         156 FIDLVRQII  164 (168)
T ss_pred             HHHHHHHHh
Confidence            999998775

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=7.9e-31  Score=181.51  Aligned_cols=157  Identities=27%  Similarity=0.488  Sum_probs=130.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|++|+|||||++++..+.+...+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            48999999999999999999988877655443 3333 46678888888999999999864     24567899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |.+++++|+.+..|+..+......   .+.|+++|+||.|+.....+.+..++.+++++....+.|++|||++|.|++++
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~---~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~  150 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNI---SEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV  150 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence            999999999999999988765421   27899999999998654446777888888888765589999999999999999


Q ss_pred             HHHHHHH
Q 028647          169 FQCIAKN  175 (206)
Q Consensus       169 ~~~l~~~  175 (206)
                      |..+++.
T Consensus       151 f~~~~~~  157 (158)
T cd04103         151 FQEAAQK  157 (158)
T ss_pred             HHHHHhh
Confidence            9999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.3e-30  Score=186.35  Aligned_cols=156  Identities=29%  Similarity=0.622  Sum_probs=136.9

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCCh
Q 028647           14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM   93 (206)
Q Consensus        14 iG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (206)
                      +|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888888888888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647           94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA  173 (206)
Q Consensus        94 ~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~  173 (206)
                      .+++.+..|+..+.....     ++|+++|+||+|+...   ....+. ..++...+ +.+++|||++|.|++++|++|+
T Consensus        81 ~S~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~---~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~  150 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDVKDR---KVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLA  150 (200)
T ss_pred             HHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999998877542     7899999999998642   233333 35666655 8899999999999999999999


Q ss_pred             HHHHhc
Q 028647          174 KNALKS  179 (206)
Q Consensus       174 ~~~~~~  179 (206)
                      +.+...
T Consensus       151 ~~i~~~  156 (200)
T smart00176      151 RKLIGD  156 (200)
T ss_pred             HHHHhc
Confidence            999775

Ran is involved in the active transport of proteins through nuclear pores.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=2.3e-30  Score=180.10  Aligned_cols=161  Identities=43%  Similarity=0.734  Sum_probs=138.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|+|||||+++|.+..+.....++.+.......+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887766667766676677777777788999999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+......    ++|+++|+||+|+...  .....++..++....+ .+++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~  153 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ--RVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEEL  153 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence            999999999999998888766543    6899999999999854  4455666777777666 88999999999999999


Q ss_pred             HHHHHHHH
Q 028647          169 FQCIAKNA  176 (206)
Q Consensus       169 ~~~l~~~~  176 (206)
                      ++++.+.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04123         154 FLSLAKRM  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.98  E-value=2e-30  Score=180.89  Aligned_cols=160  Identities=32%  Similarity=0.622  Sum_probs=134.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++|+++|++|||||||+++|...  .+...+.++.+.++....+.++ +..+.+.+||+||+..+...+..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999865  5667788888877766666664 56689999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++++++.+..|+..+....     .+.|+++|+||+|+.+.  .....++.+.+...++ .+++++|++++.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  152 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK--AEVTDAQAQAFAQANQ-LKFFKTSALRGVGY  152 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCh
Confidence            9999999999999999988876553     26899999999999765  3445555566666665 78999999999999


Q ss_pred             HHHHHHHHHHH
Q 028647          166 EEAFQCIAKNA  176 (206)
Q Consensus       166 ~~l~~~l~~~~  176 (206)
                      +++|+.+.+.+
T Consensus       153 ~~l~~~l~~~~  163 (164)
T cd04101         153 EEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=2.6e-30  Score=181.87  Aligned_cols=160  Identities=30%  Similarity=0.502  Sum_probs=135.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988887777765 3444556778888889999999999999998888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|+..+.....     +.|+++|+||+|+....          .+.+..+++..++...+...++++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~  154 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHNP-----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC  154 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence            999999999874 57776654322     68999999999986532          356677888899988875589999


Q ss_pred             eccCCCCHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAK  174 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~  174 (206)
                      ||++|.|++++|+.++-
T Consensus       155 Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         155 SALTQKNLKEVFDTAIL  171 (173)
T ss_pred             eCCCCCCHHHHHHHHHh
Confidence            99999999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=7.2e-30  Score=178.94  Aligned_cols=164  Identities=39%  Similarity=0.653  Sum_probs=140.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||+||+..+......+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988887777888877777778888888889999999999989988889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....+..+.+..... .+++++|+++|.|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~~i~v~NK~D~~~~--~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv  157 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANN----KVITILVGNKIDLAER--REVSQQRAEEFSDAQD-MYYLETSAKESDNV  157 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEeeCCCCCCH
Confidence            999999999999888888877554332    6899999999998754  4455556666666665 88999999999999


Q ss_pred             HHHHHHHHHHH
Q 028647          166 EEAFQCIAKNA  176 (206)
Q Consensus       166 ~~l~~~l~~~~  176 (206)
                      +++|++|.+.+
T Consensus       158 ~~l~~~i~~~~  168 (169)
T cd04114         158 EKLFLDLACRL  168 (169)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=7.3e-30  Score=185.79  Aligned_cols=166  Identities=27%  Similarity=0.400  Sum_probs=136.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc-cCcEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL   86 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~   86 (206)
                      ++|+++|++|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|++.+  ....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence            58999999999999999999888776 555666554666777888888899999999998832  2334556 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |||++++.+++.+..|+..+.....   ..++|+++|+||+|+.+.  +.+..++...++..++ ++++++||+++.|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~  152 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQEGRACAVVFD-CKFIETSAGLQHNVD  152 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence            9999999999999999888766432   127899999999999765  5566777777877776 789999999999999


Q ss_pred             HHHHHHHHHHHhcCcc
Q 028647          167 EAFQCIAKNALKSGEE  182 (206)
Q Consensus       167 ~l~~~l~~~~~~~~~~  182 (206)
                      ++|+++++.+..+...
T Consensus       153 ~l~~~l~~~~~~~~~~  168 (221)
T cd04148         153 ELLEGIVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            9999999998754443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=5.7e-30  Score=180.31  Aligned_cols=162  Identities=27%  Similarity=0.465  Sum_probs=135.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|+|||||+++|..+.+...+.++.... ....+.+++..+.+.+||++|++.+......+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            589999999999999999999998877776665433 3446778888888999999999999888888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcEEEe
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |.+++.+++.+. .|...+... .    ++.|+++|+||+|+.+...          +....++++.+++.++..+++++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-A----PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC  154 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-C----CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999885 566665433 1    2789999999999865421          24567788888888886689999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~  176 (206)
                      ||++|.|++++|+.+++.+
T Consensus       155 Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         155 SALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCcCCCHHHHHHHHHHHh
Confidence            9999999999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00154 Rab Rab family

Probab=99.97  E-value=9.2e-30  Score=176.18  Aligned_cols=159  Identities=48%  Similarity=0.874  Sum_probs=140.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+......    ..|+++++||+|+...  .....++..++....+ .+++++|++++.|++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~  153 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPE----NIPIILVGNKIDLEDQ--RQVSTEEAQQFAKENG-LLFFETSAKTGENVEEL  153 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEccccccc--ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence            999999999999998888776532    6899999999999733  4556778888888765 89999999999999999


Q ss_pred             HHHHHH
Q 028647          169 FQCIAK  174 (206)
Q Consensus       169 ~~~l~~  174 (206)
                      +++|.+
T Consensus       154 ~~~i~~  159 (159)
T cd00154         154 FQSLAE  159 (159)
T ss_pred             HHHHhC
Confidence            999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=7.9e-30  Score=178.11  Aligned_cols=162  Identities=28%  Similarity=0.469  Sum_probs=133.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-hccchhhhhccCcEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~   88 (206)
                      +|+|+|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++.+|++++|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998887766666664443 55667888888999999999885 3445677889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC-CHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-NVEE  167 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~  167 (206)
                      |++++++++.+..|+..+.....  ...++|+++|+||+|+.+.  +....++...++...+ .+++++|+++|. |+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~  154 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHS  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHH
Confidence            99999999999998887765432  1227899999999998754  4556677888888887 889999999994 9999


Q ss_pred             HHHHHHHHHH
Q 028647          168 AFQCIAKNAL  177 (206)
Q Consensus       168 l~~~l~~~~~  177 (206)
                      +|+.+.+.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=2.7e-29  Score=175.09  Aligned_cols=162  Identities=35%  Similarity=0.586  Sum_probs=137.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|+|||||+++++...+...+.++.+..+ ......++..+.+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888777777765444 455667888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++.+++....|...+......   .++|+++|+||+|+...  .....++...+...++ .+++++|+++|.|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  153 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDD---DNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHH
Confidence            999999999999998888876442   27899999999999763  3345566666777766 78999999999999999


Q ss_pred             HHHHHHHHH
Q 028647          169 FQCIAKNAL  177 (206)
Q Consensus       169 ~~~l~~~~~  177 (206)
                      |+.+.+.+.
T Consensus       154 ~~~l~~~~~  162 (164)
T cd04139         154 FYDLVREIR  162 (164)
T ss_pred             HHHHHHHHH
Confidence            999998774

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=1.3e-29  Score=180.73  Aligned_cols=160  Identities=26%  Similarity=0.428  Sum_probs=127.2

Q ss_pred             eEEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCccce-eEEEEE--------EEeCCeEEEEEEEeCCChhhhcc
Q 028647            8 LLKVIILGDSGVGKTSLMN-QYVNKK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   72 (206)
                      .+||+++|.+|+|||||+. ++.++.     +...+.|+.+. +.+...        ..+++..+.+.+|||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            3799999999999999995 565443     34556677642 222221        256788899999999998753  


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------------Cc
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-----------------NS  134 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------------~~  134 (206)
                      ....+++++|++++|||++++.|++.+. .|+..+.....     +.|+++|+||+|+...                 ..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~  154 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA  154 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhccccccchhhhcccccccccccC
Confidence            3456789999999999999999999996 58887765432     7899999999998642                 13


Q ss_pred             ccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          135 RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      +.+..++++++++.++ ++|++|||++|.|++++|+.+++.
T Consensus       155 ~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         155 DILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence            6778899999999988 799999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=2.3e-29  Score=177.36  Aligned_cols=162  Identities=28%  Similarity=0.540  Sum_probs=134.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      .||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+.......+.++|++++|+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988877777776554 345677888889999999999988888878889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcEEEe
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|...+.....     +.|+++|+||.|+.+...          .....++.++++...+..+++++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~  155 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC  155 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence            999999998885 47666654322     789999999999865321          23445677778877776689999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~  176 (206)
                      ||++|.|++++|++|.+.+
T Consensus       156 Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         156 SAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccccCcCHHHHHHHHHHHh
Confidence            9999999999999999765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.7e-32  Score=176.91  Aligned_cols=175  Identities=44%  Similarity=0.668  Sum_probs=156.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe---------CCeEEEEEEEeCCChhhhccchh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------EDRLFTLQIWDTAGQERFQSLGV   75 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~   75 (206)
                      -++.++.+.+|.+|+||||++.+++.++|.....++.+.++..+.+-+         .+..+.+++|||+|+++|+++..
T Consensus         6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT   85 (219)
T KOG0081|consen    6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT   85 (219)
T ss_pred             HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence            356678899999999999999999999999999999998887777654         33567899999999999999999


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .+++.+-+++++||+++..||-++..|+.++..+.--.   +..+++++||+||.+.  ++++.+++..++.+++ +|++
T Consensus        86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg-lPYf  159 (219)
T KOG0081|consen   86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG-LPYF  159 (219)
T ss_pred             HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-CCee
Confidence            99999999999999999999999999999998776533   5569999999999987  8999999999999998 9999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhcCccccc
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~  185 (206)
                      ++||-+|.|+++..+.++..+.++.++-..
T Consensus       160 ETSA~tg~Nv~kave~LldlvM~Rie~~v~  189 (219)
T KOG0081|consen  160 ETSACTGTNVEKAVELLLDLVMKRIEQCVE  189 (219)
T ss_pred             eeccccCcCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887765443

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-29  Score=163.90  Aligned_cols=194  Identities=33%  Similarity=0.618  Sum_probs=168.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++-.++|.-|+|||.|++.|..++|...-..+.+..+-.+.+.+.+..+++++||++|+++|+...+.+++.+.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            56799999999999999999999999998888888899999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++.+.+...+..|+..-.....    ++..+++++||.|+..+  +.+..++.++|+...+ .-|+++|+++|+|+
T Consensus        89 mvyditrrstynhlsswl~dar~ltn----pnt~i~lignkadle~q--rdv~yeeak~faeeng-l~fle~saktg~nv  161 (215)
T KOG0097|consen   89 MVYDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG-LMFLEASAKTGQNV  161 (215)
T ss_pred             EEEEehhhhhhhhHHHHHhhhhccCC----CceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC-eEEEEecccccCcH
Confidence            99999999999999999887755443    37789999999999887  8899999999999987 88999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccccCCcc-------------cccCCCCCCCCCCccC
Q 028647          166 EEAFQCIAKNALKSGEEEEIYLPDT-------------IDVGNSSQPRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~gc~~  206 (206)
                      ++.|-...+.++.....+..++.+.             -.+......++-||.|
T Consensus       162 edafle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  162 EDAFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            9999999998888776665554332             2233344666777887

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=5.2e-29  Score=177.30  Aligned_cols=169  Identities=28%  Similarity=0.515  Sum_probs=138.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      .+|+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+.......+..+|++++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998887766666655444 345667787788999999999888777667788999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------cccccHHHHHHHHHhcCCCcEEEeec
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--------SRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      |+++.++++.+. .|+..+.....     ++|+++|+||+|+.+..        .+....++...+++.++..+++++||
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  155 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA  155 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence            999999999986 58887765432     68999999999986421        23455677888888887668999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCccc
Q 028647          160 KEGINVEEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~~~~~~  183 (206)
                      ++|.|++++|+++.+.++.-++.+
T Consensus       156 ~~~~~v~~~f~~l~~~~~~~~~~~  179 (187)
T cd04129         156 LTGEGVDDVFEAATRAALLVRKSE  179 (187)
T ss_pred             CCCCCHHHHHHHHHHHHhcccCcc
Confidence            999999999999999886655544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00876 Ras Ras family

Probab=99.97  E-value=7.1e-29  Score=172.20  Aligned_cols=159  Identities=36%  Similarity=0.672  Sum_probs=137.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      ||+++|++|||||||++++++..+...+.++.. +.....+...+..+.+.+||+||+..+......+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777766 4556667777777899999999999988888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF  169 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~  169 (206)
                      ++++++++....|...+......   .+.|+++|+||+|+...  +....+++..+...++ .+++++|++++.|+++++
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~  153 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF  153 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc--ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence            99999999998888887766542   27899999999999864  5566778888888776 899999999999999999


Q ss_pred             HHHHHH
Q 028647          170 QCIAKN  175 (206)
Q Consensus       170 ~~l~~~  175 (206)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (160)
T cd00876         154 KLLVRE  159 (160)
T ss_pred             HHHHhh
Confidence            999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.3e-28  Score=176.76  Aligned_cols=170  Identities=31%  Similarity=0.446  Sum_probs=135.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      ||+++|.+|+|||||+++|....+...+.++.. +.....+.+.+..+.+.+||++|+..+......++..+|++++|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666654 3445567778877899999999999888888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF  169 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~  169 (206)
                      ++++.+++.+..|+..+......   .++|+++|+||+|+.+.. .....++..+......+.+++++|+++|.|++++|
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  155 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKED---KFVPIVVVGNKADSLEEE-RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF  155 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEcccccccc-ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence            99999999999998888765542   278999999999987631 33334344433332223789999999999999999


Q ss_pred             HHHHHHHHhcCcccc
Q 028647          170 QCIAKNALKSGEEEE  184 (206)
Q Consensus       170 ~~l~~~~~~~~~~~~  184 (206)
                      ++|++.+.......+
T Consensus       156 ~~l~~~~~~~~~~~~  170 (198)
T cd04147         156 KELLRQANLPYNLSP  170 (198)
T ss_pred             HHHHHHhhcccccch
Confidence            999998865444333

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=6.6e-29  Score=176.15  Aligned_cols=167  Identities=22%  Similarity=0.300  Sum_probs=129.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      .++|+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|++.+...+..+++++|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            48999999999999999999998776643 566555554444443 3356789999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH--hc---CCCcEEEeeccC
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA--SK---GNIPYFETSAKE  161 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~S~~~  161 (206)
                      |+|++++.+++....|+..+......   .++|+++|+||+|+.+.    ...+++..+..  ..   ..++++++||++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  154 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSEN---QGVPVLVLANKQDLPNA----LSVSEVEKLLALHELSASTPWHVQPACAII  154 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhc---CCCcEEEEEECcCcccc----CCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence            99999998888888887777654322   27899999999998653    22333444332  11   124689999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCcc
Q 028647          162 GINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      |.|+++++++|.+.+.+..+.
T Consensus       155 ~~gi~~l~~~l~~~l~~~~~~  175 (183)
T cd04152         155 GEGLQEGLEKLYEMILKRRKM  175 (183)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999998765543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=2.4e-28  Score=172.93  Aligned_cols=165  Identities=34%  Similarity=0.532  Sum_probs=137.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      .+|+++|.+|+|||||+++|....+...+.++.+... ...+...+..+.+.+||+||+.++...+..++..+|++++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998887766666654443 455667777788999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |.++..+++.+..|+..+......   .+.|+++|+||+|+...  +....++...+...++ .+++++|++++.|+.++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  154 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHTQ--RQVSTEEGKELAESWG-AAFLESSARENENVEEA  154 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhhc--CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            999999999999988887765432   26899999999998754  4445556667777766 78999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 028647          169 FQCIAKNALKSG  180 (206)
Q Consensus       169 ~~~l~~~~~~~~  180 (206)
                      ++++.+.+....
T Consensus       155 ~~~l~~~~~~~~  166 (180)
T cd04137         155 FELLIEEIEKVE  166 (180)
T ss_pred             HHHHHHHHHHhc
Confidence            999999886554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=5.6e-31  Score=168.55  Aligned_cols=162  Identities=41%  Similarity=0.668  Sum_probs=148.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC
Q 028647           13 ILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                      ++|.+++|||.|+-++-.+.|. ....++.+.++..+.+..++..+++++|||+|+++|++....+++.+|++++++|+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999998888777665 456888999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHH
Q 028647           92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC  171 (206)
Q Consensus        92 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~  171 (206)
                      +..||++.+.|+.++.....+    .+.+.+++||+|+.+.  +.+..++.++++..++ +||+++|+++|.|++..|-.
T Consensus        82 nkasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~~  154 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFLA  154 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHHHHHHHC-CCceeccccccccHhHHHHH
Confidence            999999999999999888766    6788999999999876  7788899999999998 99999999999999999999


Q ss_pred             HHHHHHhcCc
Q 028647          172 IAKNALKSGE  181 (206)
Q Consensus       172 l~~~~~~~~~  181 (206)
                      |.+.+.+..-
T Consensus       155 ia~~l~k~~~  164 (192)
T KOG0083|consen  155 IAEELKKLKM  164 (192)
T ss_pred             HHHHHHHhcc
Confidence            9998876543

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=3.6e-29  Score=176.24  Aligned_cols=158  Identities=18%  Similarity=0.291  Sum_probs=121.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+++|.+|||||||++++..+.+. .+.++.+.++.  .+...  .+.+.+||+||++.+...+..+++++|++++
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4699999999999999999999877664 45666665543  23333  4789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccCC
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~  162 (206)
                      |+|++++++++....++..+....   ..++.|++||+||.|+.+..    ..+++.+....    ...+.++++||++|
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  159 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDAM----KAAEITEKLGLHSIRDRNWYIQPTCATSG  159 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccCC----CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence            999999999998888877765431   11268999999999997542    12222222211    11245778999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028647          163 INVEEAFQCIAKNA  176 (206)
Q Consensus       163 ~~i~~l~~~l~~~~  176 (206)
                      .|++++|++|.+.+
T Consensus       160 ~gv~e~~~~l~~~~  173 (175)
T smart00177      160 DGLYEGLTWLSNNL  173 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998775

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=4.9e-29  Score=176.29  Aligned_cols=162  Identities=16%  Similarity=0.293  Sum_probs=123.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++|+++|.+|||||||++++..+.+. .+.++.+.+..  .+...  .+.+++||+||++.+...+..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34589999999999999999999877665 45666665443  33343  478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC----CCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG----NIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~S~~~  161 (206)
                      +|+|++++++++....++..+...   ....+.|++||+||+|+.+..    ..+++.+...-..    .+.++++||++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~---~~~~~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~~~~~~~~~Sa~~  162 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcC---HhhCCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCceEEEeccCCC
Confidence            999999999988877766655432   122378999999999997642    2333333322111    13466899999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 028647          162 GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~  179 (206)
                      |+|++++|++|.+.+.++
T Consensus       163 g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        163 GEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCCHHHHHHHHHHHHhhc
Confidence            999999999999887653

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=2.3e-29  Score=176.03  Aligned_cols=156  Identities=17%  Similarity=0.299  Sum_probs=121.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.++|+++|.+|+|||||+++|..+.+. .+.++.+.++.  .+..  ..+.+.+||++|++.+...+..+++++|++++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999876654 34566665543  2333  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh---c-CCCcEEEeeccCC
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS---K-GNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~S~~~~  162 (206)
                      |+|++++.+++....++..+.....   ..+.|+++|+||+|+.+.    ...++++++...   . ..+.++++||++|
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g  155 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDRE---MRDALLLVFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSCATSG  155 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHh---hcCCcEEEEEECcCCccC----CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence            9999999999888877766654321   126899999999998653    234555554421   1 1246899999999


Q ss_pred             CCHHHHHHHHHH
Q 028647          163 INVEEAFQCIAK  174 (206)
Q Consensus       163 ~~i~~l~~~l~~  174 (206)
                      .|++++|++|.+
T Consensus       156 ~gv~~~~~~l~~  167 (168)
T cd04149         156 DGLYEGLTWLSS  167 (168)
T ss_pred             CChHHHHHHHhc
Confidence            999999999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=1.3e-28  Score=172.62  Aligned_cols=160  Identities=21%  Similarity=0.377  Sum_probs=125.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      +|+++|.+|||||||+++|....+. .+.++.+..+.  .+.++  .+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            5899999999999999999988654 35666554443  33343  4788999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC-----CCcEEEeeccCCCC
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG-----NIPYFETSAKEGIN  164 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~  164 (206)
                      ++++.+++....|+..+.....   ..+.|+++|+||+|+.+.    ...++++++....+     .+.++++||++|.|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  148 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKE---LRDALLLIFANKQDVAGA----LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG  148 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChh---hCCCCEEEEEeCcCcccC----CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence            9999999999888887764322   125799999999998643    34555555543221     13688999999999


Q ss_pred             HHHHHHHHHHHHHhcCc
Q 028647          165 VEEAFQCIAKNALKSGE  181 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~  181 (206)
                      ++++|++|.+.+....+
T Consensus       149 v~~~f~~l~~~~~~~~~  165 (169)
T cd04158         149 LYEGLDWLSRQLVAAGV  165 (169)
T ss_pred             HHHHHHHHHHHHhhccc
Confidence            99999999988766443

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=1.8e-28  Score=171.42  Aligned_cols=163  Identities=25%  Similarity=0.357  Sum_probs=124.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|.+|+|||||+++|.++.+...+..+ .... .....+.+..+.+.+||+||...+...+..++..+|++++|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999998886553332 2222 344456667789999999999888777777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEeeccCCCCHH
Q 028647           89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFETSAKEGINVE  166 (206)
Q Consensus        89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~  166 (206)
                      |++++++++.+. .|...+.....     +.|+++|+||+|+.+........+++..+...++. .+++++||++|.|++
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  153 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence            999999999875 56666654332     78999999999997653221123334444444443 379999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      ++|+.+.+.++.
T Consensus       154 ~lf~~~~~~~~~  165 (166)
T cd01893         154 EVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHhcC
Confidence            999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=3.7e-28  Score=170.53  Aligned_cols=160  Identities=29%  Similarity=0.551  Sum_probs=130.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|+|||||+++|++..+...+.++... .........+..+.+.+||+||++.+.......++.+|++++|+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            58999999999999999999999886666666543 33555667788889999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc---------cccHHHHHHHHHhcCCCcEEEee
Q 028647           89 DVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR---------VVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        89 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                      |+++++++..... |+..+.....     +.|+++|+||+|+.+....         ....++..++...++..+++++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  154 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS  154 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence            9999998887654 5555544332     7899999999999876432         33567778888888755999999


Q ss_pred             ccCCCCHHHHHHHHHH
Q 028647          159 AKEGINVEEAFQCIAK  174 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~  174 (206)
                      +++|.|+++++++|++
T Consensus       155 a~~~~gi~~l~~~i~~  170 (171)
T cd00157         155 ALTQEGVKEVFEEAIR  170 (171)
T ss_pred             cCCCCCHHHHHHHHhh
Confidence            9999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=7.4e-29  Score=172.06  Aligned_cols=155  Identities=17%  Similarity=0.317  Sum_probs=117.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|.+|||||||++++..+.+. .+.++.+.+..  .+...  .+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999877765 45666665543  23333  478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-h--cCCCcEEEeeccCCCCH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-S--KGNIPYFETSAKEGINV  165 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~S~~~~~~i  165 (206)
                      |++++.+++....++..+....   ...+.|+++++||+|+.+..   ...+....+.. .  ...+.++++||++|.|+
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv  149 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNED---ELRDAVLLVFANKQDLPNAM---SAAEVTDKLGLHSLRNRNWYIQATCATSGDGL  149 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcH---HhcCCCEEEEEECCCCCCCC---CHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence            9999999998888777665321   11268999999999996531   11222222211 1  11245789999999999


Q ss_pred             HHHHHHHHH
Q 028647          166 EEAFQCIAK  174 (206)
Q Consensus       166 ~~l~~~l~~  174 (206)
                      +++|++|.+
T Consensus       150 ~~~~~~l~~  158 (159)
T cd04150         150 YEGLDWLSN  158 (159)
T ss_pred             HHHHHHHhc
Confidence            999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=3.9e-29  Score=174.32  Aligned_cols=155  Identities=18%  Similarity=0.262  Sum_probs=122.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      +|+++|++|+|||||+++|.+..+...+.++.+...    ..++...+.+.+||++|++.+...+..+++++|++++|+|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999999887777777776543    2234445789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc--cHHHHHHHHHhcCCCcEEEeeccC------
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV--SEKKARAWCASKGNIPYFETSAKE------  161 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~------  161 (206)
                      .+++.+++....|+..+....     .++|+++|+||+|+........  ...++..+++..+ +.++++||++      
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~  150 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR-WILQGTSLDDDGSPSR  150 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChhH
Confidence            999999988888877775432     2889999999999976521110  0112344444444 7889999998      


Q ss_pred             CCCHHHHHHHHHH
Q 028647          162 GINVEEAFQCIAK  174 (206)
Q Consensus       162 ~~~i~~l~~~l~~  174 (206)
                      ++|++++|+.++.
T Consensus       151 ~~~v~~~~~~~~~  163 (164)
T cd04162         151 MEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=2.5e-28  Score=173.28  Aligned_cols=165  Identities=35%  Similarity=0.566  Sum_probs=150.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+++|.+|+|||+|+.+|..+.|...+.++.+ +.+.+.+.+++....+.|+||+|++++..+...++.++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999987 5558888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      ||+++++.||+.+..+...+.......   .+|+++|+||+|+...  +.+..++++.++..+. ++|+++||+.+.+++
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~---~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~-~~f~E~Sak~~~~v~  154 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRD---DVPIILVGNKCDLERE--RQVSEEEGKALARSWG-CAFIETSAKLNYNVD  154 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcC---CCCEEEEEEcccchhc--cccCHHHHHHHHHhcC-CcEEEeeccCCcCHH
Confidence            999999999999999999885544332   6899999999999887  8899999999999998 779999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      ++|..|++.+-.
T Consensus       155 ~~F~~L~r~~~~  166 (196)
T KOG0395|consen  155 EVFYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=1.5e-28  Score=173.99  Aligned_cols=161  Identities=19%  Similarity=0.301  Sum_probs=121.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.++|+++|++|||||||++++..+.+.. +.++.+.++.  .+...  .+.+.+||++|++.+...+..+++++|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999998776653 5566665443  33343  4789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh--c--CCCcEEEeeccCC
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS--K--GNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~S~~~~  162 (206)
                      |+|++++++++....++..+...   ....+.|+++|+||.|+.+..    ..+++......  .  ..+.++++||++|
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg  163 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSE---DELRDAVLLVFANKQDLPNAM----STTEVTEKLGLHSVRQRNWYIQGCCATTA  163 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhC---HhhcCCCEEEEEeCCCCCCCC----CHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence            99999999988887766665432   112268999999999986532    12222222111  0  1135678999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 028647          163 INVEEAFQCIAKNALKS  179 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~  179 (206)
                      .|++++|++|.+.+.+.
T Consensus       164 ~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        164 QGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999887654

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2e-28  Score=172.34  Aligned_cols=158  Identities=21%  Similarity=0.384  Sum_probs=122.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      +...++|+++|++|||||||+++|.+..+ ....++.+.  ....+.+++  +.+.+||+||++.+...+..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            35568999999999999999999998754 344555553  333444553  6789999999998888888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeecc
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~  160 (206)
                      ++|+|++++.+++....|+..+.....   ..+.|+++|+||+|+.+..    ..+++.++...    ...++++++||+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEER---LAGATLLILANKQDLPGAL----SEEEIREALELDKISSHHWRIQPCSAV  158 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECcccccCC----CHHHHHHHhCccccCCCceEEEeccCC
Confidence            999999999999888888777654221   2378999999999997642    34445544432    124689999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028647          161 EGINVEEAFQCIAK  174 (206)
Q Consensus       161 ~~~~i~~l~~~l~~  174 (206)
                      +|.|++++|+++++
T Consensus       159 ~g~gi~~l~~~l~~  172 (173)
T cd04154         159 TGEGLLQGIDWLVD  172 (173)
T ss_pred             CCcCHHHHHHHHhc
Confidence            99999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=2.9e-27  Score=171.85  Aligned_cols=168  Identities=29%  Similarity=0.593  Sum_probs=142.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      .....++|+++|++|||||||++++..+.+...+.++.+.++....+..+++.+.+.+||++|+..+......++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            34567999999999999999999999888888888998888888777788888999999999999888888888999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|+++..++..+..|+..+.....     ++|+++++||+|+.+.   ....+. ..+....+ ..++++|+++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~i~lv~nK~Dl~~~---~~~~~~-~~~~~~~~-~~~~e~Sa~~~~  154 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVCE-----NIPIVLVGNKVDVKDR---QVKARQ-ITFHRKKN-LQYYDISAKSNY  154 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccCccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCC
Confidence            9999999999999999999888876542     7899999999998643   222232 34555555 789999999999


Q ss_pred             CHHHHHHHHHHHHHhcCc
Q 028647          164 NVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~  181 (206)
                      |+++.|.+|++.+....+
T Consensus       155 ~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        155 NFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             CHHHHHHHHHHHHhhccc
Confidence            999999999999877544

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=3.8e-28  Score=169.00  Aligned_cols=156  Identities=18%  Similarity=0.294  Sum_probs=116.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +|+++|++|||||||+++|.+..+ ...+.++.+....  .+..  ..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 4455666654332  2222  3477899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccCCCC
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKEGIN  164 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~~  164 (206)
                      |++++.++.....|+..+..... ....++|+++|+||+|+.+...    .++......    ....+.++++||++|.|
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g  151 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDALT----AVKITQLLGLENIKDKPWHIFASNALTGEG  151 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCCC----HHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence            99999988888888777654321 1123789999999999976421    222222211    11124689999999999


Q ss_pred             HHHHHHHHHH
Q 028647          165 VEEAFQCIAK  174 (206)
Q Consensus       165 i~~l~~~l~~  174 (206)
                      ++++|++|.+
T Consensus       152 v~~~~~~l~~  161 (162)
T cd04157         152 LDEGVQWLQA  161 (162)
T ss_pred             hHHHHHHHhc
Confidence            9999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1.2e-27  Score=168.39  Aligned_cols=155  Identities=23%  Similarity=0.347  Sum_probs=118.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+++|++|+|||||++++..+.+.. ..++.+.++.  .+.++  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999877664 4566555443  33344  3678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH-HHHH----HhcCCCcEEEeeccC
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA-RAWC----ASKGNIPYFETSAKE  161 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~S~~~  161 (206)
                      |+|+++++++.....++..+.....   ..++|+++++||+|+.+..    ..++. ..+.    ... .++++++||++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~---~~~~p~viv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~-~~~~~~~SA~~  160 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHED---LRKAVLLVLANKQDLKGAM----TPAEISESLGLTSIRDH-TWHIQGCCALT  160 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECCCCCCCC----CHHHHHHHhCcccccCC-ceEEEecccCC
Confidence            9999999888877776666644321   2368999999999987531    22222 2221    122 25789999999


Q ss_pred             CCCHHHHHHHHHH
Q 028647          162 GINVEEAFQCIAK  174 (206)
Q Consensus       162 ~~~i~~l~~~l~~  174 (206)
                      |+|+++++++|.+
T Consensus       161 g~gi~e~~~~l~~  173 (174)
T cd04153         161 GEGLPEGLDWIAS  173 (174)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=1.5e-27  Score=165.68  Aligned_cols=154  Identities=23%  Similarity=0.372  Sum_probs=115.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      +|+++|++|+|||||+++|..+.+.. ..++.+.++  ..+.. +..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999887753 345554433  23333 234789999999999888888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH--hc---CCCcEEEeeccCCCC
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA--SK---GNIPYFETSAKEGIN  164 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~S~~~~~~  164 (206)
                      ++++.++.....++..++....   ..+.|+++|+||+|+....    ..+++.....  .+   ..++++++||++|.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g  149 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPGAL----TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG  149 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECcccccCc----CHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence            9999888888887777654321   1278999999999986531    1222222211  11   225789999999999


Q ss_pred             HHHHHHHHHH
Q 028647          165 VEEAFQCIAK  174 (206)
Q Consensus       165 i~~l~~~l~~  174 (206)
                      ++++|++|.+
T Consensus       150 v~~~~~~i~~  159 (160)
T cd04156         150 LAEAFRKLAS  159 (160)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=1.9e-27  Score=166.34  Aligned_cols=157  Identities=19%  Similarity=0.289  Sum_probs=119.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      +|+++|++|||||||+++|.+. +...+.++.+..  ...+...+  +.+.+||+||+..+...+..+++++|++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 555667776654  33444444  778999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH--HHHHHHHhcC-CCcEEEeeccCC----
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK--KARAWCASKG-NIPYFETSAKEG----  162 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~S~~~~----  162 (206)
                      ++++.+++.+..|+..+.....   ..+.|+++|+||+|+.+........+  .+.+++...+ .+.++++||++|    
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~---~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~  152 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPR---VSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK  152 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCcc---ccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence            9999999999888888765422   22789999999999976532111111  1122332222 257888999998    


Q ss_pred             --CCHHHHHHHHHH
Q 028647          163 --INVEEAFQCIAK  174 (206)
Q Consensus       163 --~~i~~l~~~l~~  174 (206)
                        .|+++.|+||..
T Consensus       153 ~~~g~~~~~~wl~~  166 (167)
T cd04161         153 IDPSIVEGLRWLLA  166 (167)
T ss_pred             cccCHHHHHHHHhc
Confidence              899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=3.5e-27  Score=163.57  Aligned_cols=153  Identities=20%  Similarity=0.367  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      ||+++|.+|||||||++++.+..+ ....++.+...  ..+.+.+  ..+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 34444544433  3344443  678999999999998899999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccCCCCH
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKEGINV  165 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~~i  165 (206)
                      +++++++.....++..+.....   ..+.|+++|+||+|+....    ..++..+....    ...++++++|+++|.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  148 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL  148 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence            9999999988888877766443   2378999999999987642    22333333221    12368999999999999


Q ss_pred             HHHHHHHHH
Q 028647          166 EEAFQCIAK  174 (206)
Q Consensus       166 ~~l~~~l~~  174 (206)
                      +++|++|..
T Consensus       149 ~~~~~~l~~  157 (158)
T cd00878         149 DEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHhh
Confidence            999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=2.5e-27  Score=164.31  Aligned_cols=153  Identities=22%  Similarity=0.353  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      ||+++|++++|||||++++..+.+.. ..++.+.+..  .+.+.  ...+++||+||+..+...+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776643 3455444432  33333  3678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----CCCcEEEeeccCCCCH
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----GNIPYFETSAKEGINV  165 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S~~~~~~i  165 (206)
                      ++++.++.....++..+....   ...+.|+++|+||+|+.+..    ..+++.......    ...+++++||++|.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  148 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGAL----SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL  148 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCCC----CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence            999887776655555443321   12278999999999987542    122222211110    1246999999999999


Q ss_pred             HHHHHHHHH
Q 028647          166 EEAFQCIAK  174 (206)
Q Consensus       166 ~~l~~~l~~  174 (206)
                      ++++++|.+
T Consensus       149 ~~l~~~l~~  157 (158)
T cd04151         149 DEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhc
Confidence            999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=1.5e-27  Score=165.88  Aligned_cols=169  Identities=28%  Similarity=0.520  Sum_probs=151.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ..+++.|+|..++|||+|+-.+..+.|+..+.|+...++ ...+.++ ++.+.+.+|||+|+++|+.+....+.++|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            468999999999999999999999999999999997544 6667784 99999999999999999998878899999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcE
Q 028647           86 LVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +||++.+++|++++ .+|+.++...+.     ++|+|+|++|.||..+.          ...+..++++.++++.+...+
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y  156 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY  156 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence            99999999999995 689999988874     89999999999998432          135778899999999999999


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      ++|||.+..|++++|+..+.+++...+
T Consensus       157 ~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  157 LECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             eeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999999999988655

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=3.6e-27  Score=164.94  Aligned_cols=154  Identities=24%  Similarity=0.394  Sum_probs=115.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      +|+++|++|+|||||+++|.....      ...+.++.+...  ..+.+++  ..+.+||+||+..+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      122334443333  3444544  678999999999999989999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc------CCCcEEEe
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK------GNIPYFET  157 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  157 (206)
                      +++|+|+++++++.....++..+.....   ..+.|+++++||+|+.+..    ..++...+....      ..++++++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEA---LEGVPLLILANKQDLPDAL----SVEEIKEVFQDKAEEIGRRDCLVLPV  149 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChh---hcCCCEEEEEEccccccCC----CHHHHHHHhccccccccCCceEEEEe
Confidence            9999999998888888777777654322   2278999999999987642    233334333221      23689999


Q ss_pred             eccCCCCHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAK  174 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~  174 (206)
                      ||++|.|+++++++|.+
T Consensus       150 Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         150 SALEGTGVREGIEWLVE  166 (167)
T ss_pred             eCCCCcCHHHHHHHHhc
Confidence            99999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=1.9e-26  Score=164.80  Aligned_cols=152  Identities=25%  Similarity=0.430  Sum_probs=123.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-----CeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      +||+++|.+|+|||||+++|..+.+...+.++.+.++..+.+.+.     +..+.+.+||++|++.+......+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877777776664     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCC---------------CCCCCCcEEEEEeCCCCCCCCcccccHH----HHHH
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASP---------------SDPDNFPFVVLGNKIDVDGGNSRVVSEK----KARA  144 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~  144 (206)
                      +|+|||++++.|++.+..|+.++......               ....++|+++|+||.|+.+.  +....+    ....
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~~~~~~~~~  158 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGNLVLTARGF  158 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchHHHhhHhhh
Confidence            99999999999999999999998764311               11237899999999999764  222222    3445


Q ss_pred             HHHhcCCCcEEEeeccCCC
Q 028647          145 WCASKGNIPYFETSAKEGI  163 (206)
Q Consensus       145 ~~~~~~~~~~~~~S~~~~~  163 (206)
                      ++.+.+ ++.+..++.++.
T Consensus       159 ia~~~~-~~~i~~~c~~~~  176 (202)
T cd04102         159 VAEQGN-AEEINLNCTNGR  176 (202)
T ss_pred             HHHhcC-CceEEEecCCcc
Confidence            566666 888888888644

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=1.6e-26  Score=165.00  Aligned_cols=158  Identities=25%  Similarity=0.398  Sum_probs=122.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+++|++|||||||++++.+..+. .+.++.+..  ...+.+++  ..+.+||+||+..+...+..+++.+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999987764 344444432  33445554  57889999999988888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---------------C
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---------------G  150 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~  150 (206)
                      +|+|+++.++++....++..+.....   ..+.|+++++||+|+...    ...++++.+....               .
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~---~~~~pvivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEE---LANVPFLILGNKIDLPGA----VSEEELRQALGLYGTTTGKGVSLKVSGIR  164 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCcc---ccCCCEEEEEeCCCCCCC----cCHHHHHHHhCcccccccccccccccCce
Confidence            99999999888887777777664322   226899999999998653    3445555555421               1


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          151 NIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       151 ~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      ...++++||++|+|++++|++|.+.
T Consensus       165 ~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         165 PIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEEEEEeEecCCCChHHHHHHHHhh
Confidence            2468999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=7.9e-27  Score=164.09  Aligned_cols=160  Identities=29%  Similarity=0.524  Sum_probs=125.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .++.++|+++|+.||||||+++++..+... ...||.+  +....+.+.+  +.+.+||.+|+..+...|..++.++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            367899999999999999999999876433 2444444  4445556666  6789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH--hc---CCCcEEEeec
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA--SK---GNIPYFETSA  159 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~S~  159 (206)
                      |||+|.++.+.+......+..++....   ..++|++|++||.|+.+..    ..+++.....  .+   ..+.++.+|+
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~---~~~~piLIl~NK~D~~~~~----~~~~i~~~l~l~~l~~~~~~~v~~~sa  158 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPE---LKDIPILILANKQDLPDAM----SEEEIKEYLGLEKLKNKRPWSVFSCSA  158 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGG---GTTSEEEEEEESTTSTTSS----THHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred             EEEEecccceeecccccchhhhcchhh---cccceEEEEeccccccCcc----hhhHHHhhhhhhhcccCCceEEEeeec
Confidence            999999999888888877777765432   2278999999999988753    2333333322  11   2367899999


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKNA  176 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~  176 (206)
                      .+|+|+.+.++||.+.+
T Consensus       159 ~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  159 KTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTTBTHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcC
Confidence            99999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=1.8e-26  Score=163.72  Aligned_cols=158  Identities=21%  Similarity=0.335  Sum_probs=119.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.++|+++|.+|+|||||++++.+..+. .+.++.+..  ...+.+.+  +++.+||+||+..+...+..+++++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45699999999999999999999987654 233443332  23334444  67899999999988889999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh-----------cCCCcE
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS-----------KGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~  154 (206)
                      +|+|+++++++.....++..+.....   ..+.|+++|+||+|+...    ...+++.+...-           .+...+
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~---~~~~piliv~NK~Dl~~~----~~~~~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEE---LATVPFLILGNKIDAPYA----ASEDELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChh---hcCCCEEEEEeCccccCC----CCHHHHHHHcCCCcccccccccCCceeEE
Confidence            99999999888888777776654321   127899999999998653    234444433311           123569


Q ss_pred             EEeeccCCCCHHHHHHHHHHH
Q 028647          155 FETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      +++||+++.|++++++||.++
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEeecccCCChHHHHHHHHhh
Confidence            999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=5.8e-26  Score=150.41  Aligned_cols=166  Identities=21%  Similarity=0.375  Sum_probs=128.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      +++.++|+++|..||||||++++|.+.. .....|+.+.  ...+..+++  +++.+||.+|+...++.|.+++...|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf--~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGF--QIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccce--eeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4568999999999999999999999876 3344555554  444444444  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc--HHHHHHHHHhcCCCcEEEeeccCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS--EKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      |+|+|.+++..++.....+..++..-.   .-+.|++|++||.|+..+-.....  .-.+.++....+ ++++.||+.+|
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eer---laG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~tg  163 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEER---LAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVTG  163 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhh---hcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEecccc
Confidence            999999999888887776666655322   237899999999999854221111  112333334444 99999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 028647          163 INVEEAFQCIAKNALKS  179 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~  179 (206)
                      +++.+-++|+.+.+.++
T Consensus       164 e~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            99999999999988763

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=3.2e-26  Score=158.42  Aligned_cols=154  Identities=27%  Similarity=0.454  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      .|+++|++|+|||||+++|.+..+...+.++.+.+...  +...+  +.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37999999999999999999998888877777765543  33333  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccCCCCH
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKEGINV  165 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~~i  165 (206)
                      ++++.++.....++..+.....   ..++|+++|+||+|+.+...    .++......    ....++++++|+++|.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  149 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPS---LEGIPLLVLGNKNDLPGALS----VDELIEQMNLKSITDREVSCYSISCKEKTNI  149 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChh---hcCCCEEEEEeCccccCCcC----HHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence            9999888877777766654321   22789999999999876421    111211111    112267899999999999


Q ss_pred             HHHHHHHHH
Q 028647          166 EEAFQCIAK  174 (206)
Q Consensus       166 ~~l~~~l~~  174 (206)
                      ++++++|.+
T Consensus       150 ~~l~~~l~~  158 (159)
T cd04159         150 DIVLDWLIK  158 (159)
T ss_pred             HHHHHHHhh
Confidence            999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04171 SelB SelB subfamily

Probab=99.95  E-value=5.7e-26  Score=158.27  Aligned_cols=155  Identities=21%  Similarity=0.207  Sum_probs=106.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +.|+++|.+|+|||||+++|.+..   +.....++.+.+.....+.+.+ ...+.+|||||++.+.......+..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            478999999999999999999643   2233334444444444444442 357899999999988777777888999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc--CCCcEEEeecc
Q 028647           86 LVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAK  160 (206)
Q Consensus        86 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~  160 (206)
                      +|+|+++   +++.+.+    ..+ ....     ..|+++++||+|+.+........++..++....  ...+++++|++
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~-~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  149 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EIL-ELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV  149 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHH-HHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence            9999987   3332222    111 1111     238999999999976421222334444444442  34789999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028647          161 EGINVEEAFQCIAK  174 (206)
Q Consensus       161 ~~~~i~~l~~~l~~  174 (206)
                      ++.|++++++.+.+
T Consensus       150 ~~~~v~~l~~~l~~  163 (164)
T cd04171         150 TGEGIEELKEYLDE  163 (164)
T ss_pred             CCcCHHHHHHHHhh
Confidence            99999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=1.9e-25  Score=170.58  Aligned_cols=167  Identities=19%  Similarity=0.155  Sum_probs=123.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchhhhhcc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   80 (206)
                      ...|+++|.||||||||+++|+..+......+.+|..+....+.+.+. ..+.+||+||..+       ....+...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            467999999999999999999987655455566666666666666322 3578999999532       11223334567


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      ++++++|+|+++.++++.+..|..++......  ..+.|+++|+||+|+.+.  .....+..+.+....+ .+++++||+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~--~~~~~~~~~~~~~~~~-~~i~~iSAk  311 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE--EEEREKRAALELAALG-GPVFLISAV  311 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc--hhHHHHHHHHHHHhcC-CCEEEEEcC
Confidence            99999999999888888888888877654321  126799999999999764  2223334444555554 789999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcC
Q 028647          161 EGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +++|+++++++|.+.+.+.+
T Consensus       312 tg~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        312 TGEGLDELLRALWELLEEAR  331 (335)
T ss_pred             CCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999886543

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=6.7e-25  Score=154.10  Aligned_cols=145  Identities=33%  Similarity=0.570  Sum_probs=125.8

Q ss_pred             CCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 028647           31 KKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQA  110 (206)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  110 (206)
                      +.|...+.++.+.++....+.+++..+.+.||||+|++.+...+..+++++|++|+|||++++++++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35667788999989988888899999999999999999999999999999999999999999999999999998887653


Q ss_pred             CCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647          111 SPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       111 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      .    ...|+++|+||+|+.+.  +.+..+++..++..++ ..++++||++|.|++++|++|++.+.+..+.
T Consensus        83 ~----~~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 G----KDVIIALVGNKTDLGDL--RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             C----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            2    26899999999999754  4567777888888776 7899999999999999999999999774433

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=2.4e-25  Score=155.81  Aligned_cols=155  Identities=18%  Similarity=0.137  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc---------chhhhhcc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVAFYRG   80 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~   80 (206)
                      +|+++|.+|+|||||+++|.+..+.....+..+...........  .+.+.+|||||+.....         ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            79999999999999999999887653333333333433333333  36889999999742110         01111123


Q ss_pred             CcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647           81 ADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                      .|++++|+|+++..++  +....|+..+....     .+.|+++|+||+|+.+..  ...  ...++... ...+++++|
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~--~~~--~~~~~~~~-~~~~~~~~S  149 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFE--DLS--EIEEEEEL-EGEEVLKIS  149 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchh--hHH--HHHHhhhh-ccCceEEEE
Confidence            6899999999987543  44556666664432     178999999999997642  111  13344433 348899999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q 028647          159 AKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~  176 (206)
                      |++|.|++++++++.+.+
T Consensus       150 a~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         150 TLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ecccCCHHHHHHHHHHHh
Confidence            999999999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=2.9e-25  Score=155.71  Aligned_cols=160  Identities=19%  Similarity=0.157  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccchhhh---hccCc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD   82 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d   82 (206)
                      +|+++|.+|+|||||+++|.+........+..+.......+.+.+. ..+.+|||||...    .......+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976543222233333333333334432 3789999999632    21222333   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647           83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (206)
                      ++++|+|++++ .+++.+..|...+......  ..+.|+++|+||+|+.+..   ...+....+.......+++++|+++
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~  155 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDEE---ELFELLKELLKELWGKPVFPISALT  155 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCch---hhHHHHHHHHhhCCCCCEEEEecCC
Confidence            99999999998 7888888887777654321  1268999999999997642   2234444555543347899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028647          162 GINVEEAFQCIAKN  175 (206)
Q Consensus       162 ~~~i~~l~~~l~~~  175 (206)
                      +.|++++++++.+.
T Consensus       156 ~~gi~~l~~~i~~~  169 (170)
T cd01898         156 GEGLDELLRKLAEL  169 (170)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=1.3e-27  Score=160.56  Aligned_cols=169  Identities=30%  Similarity=0.538  Sum_probs=157.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++++|+|..++||||++++++.+-|...+..+.+.++..+.+.+.+..+.+.+||++|+++++.....+++++.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            55799999999999999999999999999999999999999888888888888999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +||+.+|..||+....|...+.....     .+|.++|-||+|+.++  .+...++++.+++.++ ..++-+|+++..|+
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved--s~~~~~evE~lak~l~-~RlyRtSvked~NV  169 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED--SQMDKGEVEGLAKKLH-KRLYRTSVKEDFNV  169 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh--hhcchHHHHHHHHHhh-hhhhhhhhhhhhhh
Confidence            99999999999999999999988776     8999999999999987  6778888888988888 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCcc
Q 028647          166 EEAFQCIAKNALKSGEE  182 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~  182 (206)
                      ..+|.+|++.+.+...+
T Consensus       170 ~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  170 MHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998877666

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=3e-25  Score=156.91  Aligned_cols=155  Identities=19%  Similarity=0.288  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCC------ccceeEEEEEE--Ee---CCeEEEEEEEeCCChhhhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK-------FSNQYKA------TIGADFLTKEV--QF---EDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~   71 (206)
                      +|+++|.+++|||||+++|++..       +...+.+      +.+.+......  .+   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998742       1111111      11223332222  22   5667889999999999999


Q ss_pred             cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC-
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG-  150 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  150 (206)
                      ..+..+++.+|++++|+|++++.+.+....|....    .    .++|+++|+||+|+.+..    ..+...++.+.++ 
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~----~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~  149 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----E----NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGL  149 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----H----cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCC
Confidence            99999999999999999999876655554443221    1    178999999999986531    1222334444443 


Q ss_pred             -CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          151 -NIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       151 -~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                       ...++++||++|.|+++++++|.+.+
T Consensus       150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         150 DPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence             23589999999999999999998875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1.5e-25  Score=157.57  Aligned_cols=158  Identities=23%  Similarity=0.385  Sum_probs=115.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ....++|+++|++|+|||||++++.+..+. ...++.+.+.  ..+...+  ..+.+||++|+..+...+..++..+|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            345799999999999999999999987553 2344444332  3344454  5789999999988888888888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----CCCcEEEeecc
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----GNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S~~  160 (206)
                      ++|+|+.+..++.....++..+.....   ..++|+++++||+|+.+...    .+++.+.....    ..++++++||+
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATAAP----AEEIAEALNLHDLRDRTWHIQACSAK  158 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccCCC----HHHHHHHcCCcccCCCeEEEEEeECC
Confidence            999999998888877777666654322   12689999999999865421    22222221111    11357899999


Q ss_pred             CCCCHHHHHHHHHH
Q 028647          161 EGINVEEAFQCIAK  174 (206)
Q Consensus       161 ~~~~i~~l~~~l~~  174 (206)
                      +|+|+++++++|.+
T Consensus       159 ~~~gi~~~~~~l~~  172 (173)
T cd04155         159 TGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=9.6e-25  Score=163.35  Aligned_cols=145  Identities=28%  Similarity=0.527  Sum_probs=121.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-------------CeEEEEEEEeCCChhhhcc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-------------DRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~~~   72 (206)
                      ...+||+|+|..|||||||+++|..+.+...+.++.+.++....+.++             +..+.+.|||++|++.+..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            456999999999999999999999999888888999888777766664             2468899999999999999


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--------CCCCCcEEEEEeCCCCCCCCc-cc---ccHH
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS--------DPDNFPFVVLGNKIDVDGGNS-RV---VSEK  140 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~Dl~~~~~-~~---~~~~  140 (206)
                      .+..+++++|++|+|||+++..+++.+..|+..+.......        ...++|++||+||+||..... +.   +..+
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e  178 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD  178 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence            99999999999999999999999999999999997764210        112589999999999976432 22   3678


Q ss_pred             HHHHHHHhcC
Q 028647          141 KARAWCASKG  150 (206)
Q Consensus       141 ~~~~~~~~~~  150 (206)
                      ++++|+...+
T Consensus       179 ~a~~~A~~~g  188 (334)
T PLN00023        179 AARQWVEKQG  188 (334)
T ss_pred             HHHHHHHHcC
Confidence            9999998866

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=1.8e-24  Score=149.48  Aligned_cols=157  Identities=26%  Similarity=0.546  Sum_probs=126.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+....+.++.++.++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            79999999999999999999998877777788888887777777777788999999999888888888888999999999


Q ss_pred             ECCCh-hhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           89 DVNSM-KSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        89 d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |.... .++.... .+...+......    +.|+++++||+|+....    ..+.........+..+++++||.++.|++
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv~  153 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLSAETGKNID  153 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEeecCCCCCHH
Confidence            98876 5655554 566555554432    67999999999997642    33444444555556789999999999999


Q ss_pred             HHHHHHH
Q 028647          167 EAFQCIA  173 (206)
Q Consensus       167 ~l~~~l~  173 (206)
                      +++++|.
T Consensus       154 ~~~~~l~  160 (161)
T TIGR00231       154 SAFKIVE  160 (161)
T ss_pred             HHHHHhh
Confidence            9999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=1.1e-25  Score=152.84  Aligned_cols=148  Identities=19%  Similarity=0.284  Sum_probs=106.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhh--cc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--RG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~   80 (206)
                      ++|+++|.||+|||||+|+|++........|++|.+.....+.+.+  ..+.++|+||.....      .....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999886656677777777777787777  567899999943322      2223333  57


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      .|++++|+|+++.+.-   ..+..++...       ++|+++++||+|..........   ...+.+.++ ++++++||+
T Consensus        79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~-------g~P~vvvlN~~D~a~~~g~~id---~~~Ls~~Lg-~pvi~~sa~  144 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN---LYLTLQLLEL-------GIPVVVVLNKMDEAERKGIEID---AEKLSERLG-VPVIPVSAR  144 (156)
T ss_dssp             SSEEEEEEEGGGHHHH---HHHHHHHHHT-------TSSEEEEEETHHHHHHTTEEE----HHHHHHHHT-S-EEEEBTT
T ss_pred             CCEEEEECCCCCHHHH---HHHHHHHHHc-------CCCEEEEEeCHHHHHHcCCEEC---HHHHHHHhC-CCEEEEEeC
Confidence            9999999999875432   2333333322       8899999999998875444443   444555566 899999999


Q ss_pred             CCCCHHHHHHHH
Q 028647          161 EGINVEEAFQCI  172 (206)
Q Consensus       161 ~~~~i~~l~~~l  172 (206)
                      +++|++++++.|
T Consensus       145 ~~~g~~~L~~~I  156 (156)
T PF02421_consen  145 TGEGIDELKDAI  156 (156)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHhhC
Confidence            999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=9.2e-25  Score=157.57  Aligned_cols=156  Identities=19%  Similarity=0.233  Sum_probs=110.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh---------hccchhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   76 (206)
                      ++.++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||...         +... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            44589999999999999999999987654333334444444444555443 2688999999632         1111 12


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .+..+|++++|+|++++.++.....|...+.....    .+.|+++|+||+|+.+...  ..     .+.... ..++++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~----~~~~viiV~NK~Dl~~~~~--~~-----~~~~~~-~~~~~~  184 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA----EDIPMILVLNKIDLLDDEE--LE-----ERLEAG-RPDAVF  184 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc----CCCCEEEEEEccccCChHH--HH-----HHhhcC-CCceEE
Confidence            35689999999999998877766665554433221    2689999999999976421  11     223333 378999


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~  175 (206)
                      +||+++.|+++++++|.++
T Consensus       185 ~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         185 ISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             EEcCCCCCHHHHHHHHHhh
Confidence            9999999999999999875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=3.5e-25  Score=150.86  Aligned_cols=136  Identities=24%  Similarity=0.325  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh----hhccchhhhhccCcEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV   85 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i   85 (206)
                      ||+++|++|+|||||+++|.+..+.  +.++.+.       .+..     .+||+||+.    .+.......++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~~~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALIVTAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHHHHhhcCCEEE
Confidence            7999999999999999999987542  2222221       1222     589999973    22222223578999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.++.. ..|...    .      ..|+++|+||+|+.+.   ....++..++++..+..+++++||++|.|+
T Consensus        68 lv~d~~~~~s~~~-~~~~~~----~------~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  133 (142)
T TIGR02528        68 LVQSATDPESRFP-PGFASI----F------VKPVIGLVTKIDLAEA---DVDIERAKELLETAGAEPIFEISSVDEQGL  133 (142)
T ss_pred             EEecCCCCCcCCC-hhHHHh----c------cCCeEEEEEeeccCCc---ccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence            9999999887654 233221    1      3499999999998652   334566677777766458999999999999


Q ss_pred             HHHHHHHH
Q 028647          166 EEAFQCIA  173 (206)
Q Consensus       166 ~~l~~~l~  173 (206)
                      +++|+++.
T Consensus       134 ~~l~~~l~  141 (142)
T TIGR02528       134 EALVDYLN  141 (142)
T ss_pred             HHHHHHHh
Confidence            99999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=2.7e-24  Score=161.11  Aligned_cols=158  Identities=20%  Similarity=0.108  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc--------cchhhhhcc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYRG   80 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~   80 (206)
                      +|+++|.||+|||||+|+|++..+.. ...+.++..... .+...+. .++.+|||||.....        ......+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            58999999999999999999987643 333334333322 2222222 468999999964321        123456788


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|+|+++..+.+  ..++..+..       .+.|+++|+||+|+.+.   ....+....+....+..+++++||+
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~  147 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISAL  147 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecC
Confidence            99999999999876653  222332221       16899999999999742   2233445555555554589999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCc
Q 028647          161 EGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      +|.|+++++++|.+.+....+
T Consensus       148 ~g~gi~~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       148 TGDNTSFLAAFIEVHLPEGPF  168 (270)
T ss_pred             CCCCHHHHHHHHHHhCCCCCC
Confidence            999999999999998855443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=4.4e-24  Score=149.34  Aligned_cols=159  Identities=22%  Similarity=0.231  Sum_probs=110.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      .|+|+|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887766544455444444444443 13467899999999888888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----c-CCCcEEEeeccCCC
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----K-GNIPYFETSAKEGI  163 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~S~~~~~  163 (206)
                      |+++....+.. ..+..+..       .++|+++|+||+|+..... ....+....+...    . ...+++++|+++|.
T Consensus        82 d~~~~~~~~~~-~~~~~~~~-------~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA-------ANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE  152 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH-------cCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence            99875332221 11122211       1789999999999875321 1111222222111    1 23689999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028647          164 NVEEAFQCIAKNAL  177 (206)
Q Consensus       164 ~i~~l~~~l~~~~~  177 (206)
                      |+++++++|.+...
T Consensus       153 gi~~l~~~l~~~~~  166 (168)
T cd01887         153 GIDDLLEAILLLAE  166 (168)
T ss_pred             CHHHHHHHHHHhhh
Confidence            99999999988763

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.93  E-value=3.4e-24  Score=153.38  Aligned_cols=162  Identities=17%  Similarity=0.164  Sum_probs=109.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc--CCCCCCC------------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccch
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN--KKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   74 (206)
                      .+|+++|.+++|||||+++|+.  +.+...+            ..+.+.+.......+......+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            5899999999999999999997  4443322            1223344444444444555789999999999999999


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-----
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-----  149 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----  149 (206)
                      ..+++.+|++++|+|+++.. ......++.....       .++|+++|+||+|+.+.. .....++..++...+     
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  153 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEE  153 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccc
Confidence            99999999999999998742 1222233332221       178999999999997542 222344555554322     


Q ss_pred             -CCCcEEEeeccCCCCHHHH------HHHHHHHHHhc
Q 028647          150 -GNIPYFETSAKEGINVEEA------FQCIAKNALKS  179 (206)
Q Consensus       150 -~~~~~~~~S~~~~~~i~~l------~~~l~~~~~~~  179 (206)
                       .+++++++||++|.|+.++      +++|++++.++
T Consensus       154 ~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         154 QLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             cCccCEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence             1378999999999876443      44555555443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.92  E-value=2.1e-25  Score=145.12  Aligned_cols=165  Identities=23%  Similarity=0.412  Sum_probs=130.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..+.+.++|-.+||||||++....+.+.....|+.|.+.+    .+..+.+.+.+||.||+..+...|..+.+.+++++
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv   93 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV   93 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence            34688999999999999999999999988888998885442    34455578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|+++++.++....-++.++...+-.   ++|++|++||.|+.++-......++.....-...-+.++.+|+++..|+
T Consensus        94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~---gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   94 YVVDAADPDKLEASRSELHDLLDKPSLT---GIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             EEeecCCcccchhhHHHHHHHhcchhhc---CCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence            9999999999888877777766544332   8999999999999876322222222111111222367899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028647          166 EEAFQCIAKNAL  177 (206)
Q Consensus       166 ~~l~~~l~~~~~  177 (206)
                      +-+.+||+++--
T Consensus       171 d~~~~Wli~hsk  182 (186)
T KOG0075|consen  171 DITLDWLIEHSK  182 (186)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998753

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=7e-24  Score=146.86  Aligned_cols=148  Identities=22%  Similarity=0.257  Sum_probs=108.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc------hhhhhc--cCcEE
Q 028647           13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFYR--GADCC   84 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~d~~   84 (206)
                      ++|.+|+|||||++++.+........++.+.+.....+.+++  ..+.+|||||+..+...      ...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765555556666666666666765  46899999998765542      344554  89999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|+.+++...   .+...+...       ++|+++|+||+|+.+...  . ......+...++ .+++++|+.++.|
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~~-------~~~~iiv~NK~Dl~~~~~--~-~~~~~~~~~~~~-~~~~~iSa~~~~~  144 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLEL-------GLPVVVALNMIDEAEKRG--I-KIDLDKLSELLG-VPVVPTSARKGEG  144 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHHc-------CCCEEEEEehhhhccccc--c-hhhHHHHHHhhC-CCeEEEEccCCCC
Confidence            9999999865432   233222211       689999999999976422  1 223345555555 7899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028647          165 VEEAFQCIAKNA  176 (206)
Q Consensus       165 i~~l~~~l~~~~  176 (206)
                      ++++++++.+.+
T Consensus       145 ~~~l~~~l~~~~  156 (158)
T cd01879         145 IDELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01889 SelB_euk SelB subfamily

Probab=99.92  E-value=3.3e-24  Score=153.21  Aligned_cols=161  Identities=19%  Similarity=0.127  Sum_probs=106.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC----CC---CCCCCCccceeEEEEEEEeC------------CeEEEEEEEeCCChhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK----KF---SNQYKATIGADFLTKEVQFE------------DRLFTLQIWDTAGQER   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~   69 (206)
                      ++|+++|++|+|||||+++|+..    .+   .....++.+.+.....+.+.            +....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    11   11222333333333333332            2356889999999876


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-h
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-S  148 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~  148 (206)
                      +..........+|++++|+|+.+.........+.  +... .     +.|+++++||+|+..........++..+... .
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~-----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~  152 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-L-----CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT  152 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-c-----CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence            6555555667789999999998754333322221  1111 1     5699999999999754323333333333221 1


Q ss_pred             -----cCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          149 -----KGNIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       149 -----~~~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                           ...++++++|+++|.|+++++++|.+.+.
T Consensus       153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence                 23478999999999999999999998874

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=1e-23  Score=161.02  Aligned_cols=162  Identities=19%  Similarity=0.150  Sum_probs=117.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc----cc---hhhhhcc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SL---GVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~   80 (206)
                      ...|+++|.||||||||+++|+.........+.++..+....+.+.+ ...+.+||+||..+..    .+   ....+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            46899999999999999999998765444445555666565666654 2568999999964221    22   2233457


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           81 ADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        81 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ++++++|+|+++.   ++++.+..|..++......  ..+.|+++|+||+|+.+..   ...+..+.+.+.++ .+++++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~--l~~kp~IIV~NK~DL~~~~---~~~~~~~~l~~~~~-~~vi~i  309 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE--LAEKPRIVVLNKIDLLDEE---ELAELLKELKKALG-KPVFPI  309 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh--hccCCEEEEEeCccCCChH---HHHHHHHHHHHHcC-CcEEEE
Confidence            9999999999976   5677777777766544221  1268999999999997642   22344455555555 789999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~  176 (206)
                      ||++++|+++++++|.+.+
T Consensus       310 SAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       310 SALTGEGLDELLYALAELL  328 (329)
T ss_pred             EccCCcCHHHHHHHHHHHh
Confidence            9999999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=3.4e-23  Score=141.89  Aligned_cols=155  Identities=48%  Similarity=0.812  Sum_probs=118.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC
Q 028647           13 ILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                      |+|++|+|||||++++.+... .....++. .+.........+....+.+||+||+..+.......++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998876 34444444 6666777777777789999999999888888888889999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHH
Q 028647           92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC  171 (206)
Q Consensus        92 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~  171 (206)
                      ++.+......|........   ...+.|+++++||+|+.....  ................+++++|+.++.|+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  154 (157)
T cd00882          80 DRESFENVKEWLLLILINK---EGENIPIILVGNKIDLPEERV--VSEEELAEQLAKELGVPYFETSAKTGENVEELFEE  154 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhh---ccCCCcEEEEEeccccccccc--hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence            9988888777632222211   122789999999999876522  11221133334445589999999999999999999


Q ss_pred             HH
Q 028647          172 IA  173 (206)
Q Consensus       172 l~  173 (206)
                      |.
T Consensus       155 l~  156 (157)
T cd00882         155 LA  156 (157)
T ss_pred             Hh
Confidence            86

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=1.8e-23  Score=150.48  Aligned_cols=154  Identities=21%  Similarity=0.215  Sum_probs=102.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC-----------hhhhccch
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLG   74 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~   74 (206)
                      ...++|+++|.+|+|||||+++|.+..+.....++.+..  ...+.+.    .+.+|||||           ++.+...+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            457899999999999999999999887655555544433  3333332    478999999           45555555


Q ss_pred             hhhhc----cCcEEEEEEECCChhhH-H---------HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH
Q 028647           75 VAFYR----GADCCVLVYDVNSMKSF-D---------NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK  140 (206)
Q Consensus        75 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (206)
                      ..++.    .++++++|+|.+..... +         ....+...+.    .   .++|+++|+||+|+.+..     .+
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~---~~~p~iiv~NK~Dl~~~~-----~~  148 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----E---LGIPPIVAVNKMDKIKNR-----DE  148 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----H---cCCCeEEEEECccccCcH-----HH
Confidence            44443    46788899998653211 0         0011111111    1   178999999999987542     23


Q ss_pred             HHHHHHHhcCC--------CcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          141 KARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       141 ~~~~~~~~~~~--------~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ...++...++.        .+++++||++| |+++++++|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            34444444431        25899999999 999999999998744

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.1e-24  Score=144.34  Aligned_cols=167  Identities=20%  Similarity=0.358  Sum_probs=129.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .+..++|+++|--++||||++.+|-.+.+... .||.|.+...  +.+.+  +.+++||.+|++.++..|.+++.+.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence            35679999999999999999999987776544 6776655544  44444  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      |||+|.+|++-+......+..++..   ....+.|+++.+||.|++++.......+.+....-....+.+..++|.+|+|
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~---~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAE---PELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcC---cccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            9999999998888777766665544   3355899999999999998744222222221111112347889999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028647          165 VEEAFQCIAKNALKS  179 (206)
Q Consensus       165 i~~l~~~l~~~~~~~  179 (206)
                      +.+.++++.+.+..+
T Consensus       166 L~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=2.4e-23  Score=166.98  Aligned_cols=164  Identities=21%  Similarity=0.196  Sum_probs=116.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh----------hhccc-h
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSL-G   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~-~   74 (206)
                      ..++|+++|.+|+|||||+++|++..+. ....++++.+.....+.+++..  +.+|||||..          .+... .
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999987643 3455666666666667777754  5799999952          22222 1


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ..+++.+|++++|+|++++.+..... ++..+..       .+.|+++|+||+|+.+........+++.+........++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  359 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR  359 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence            24568999999999999987766553 3333322       178999999999997532222222333332233344789


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +++||++|.|++++|+.+.+.+....
T Consensus       360 ~~~SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        360 VNISAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998775433

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.92  E-value=1.7e-23  Score=148.97  Aligned_cols=157  Identities=22%  Similarity=0.181  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----------------ccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (206)
                      +|+|+|.+|+|||||+++|.+.........                +.+...........  ...+.+||+||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            589999999999999999998765543311                12222222233333  367899999999888888


Q ss_pred             hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----  149 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----  149 (206)
                      +..+++.+|++++|+|+.++.+... ..++..+..       .+.|+++|+||+|+..........+...+.....    
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS  150 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence            8889999999999999987654332 223322221       1789999999999986433333444455444432    


Q ss_pred             ---------CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          150 ---------GNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       150 ---------~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                               ...+++++|+++|.|++++++++.+.+
T Consensus       151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         151 TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                     247899999999999999999999886

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=2.5e-23  Score=160.27  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=111.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccchhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   77 (206)
                      ..++|+++|.+|+|||||+|+|++........+++|.++....+.+.+. ..+.+|||+|..         .+.. ....
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence            4589999999999999999999998755445556666676777777433 478899999962         2222 2235


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +.++|++++|+|++++.+.+....|...+.....    .+.|+++|+||+|+.+.  ..     ...+..  ...+++++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~----~~~piIlV~NK~Dl~~~--~~-----v~~~~~--~~~~~i~i  332 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGA----EDIPQLLVYNKIDLLDE--PR-----IERLEE--GYPEAVFV  332 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc----CCCCEEEEEEeecCCCh--Hh-----HHHHHh--CCCCEEEE
Confidence            7889999999999998877766555443332211    26799999999998653  11     111111  12468999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~  175 (206)
                      ||++|.|+++++++|.+.
T Consensus       333 SAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       333 SAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EccCCCCHHHHHHHHHhh
Confidence            999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.91  E-value=1.8e-23  Score=170.51  Aligned_cols=160  Identities=23%  Similarity=0.225  Sum_probs=119.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK---KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +.|+++|++++|||||+++|++.   .+.....++.+.+.....+...+  ..+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            47999999999999999999963   33344556666666555666666  67899999999999988888999999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccHHHHHHHHHhcC---CCcEEEee
Q 028647           86 LVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSEKKARAWCASKG---NIPYFETS  158 (206)
Q Consensus        86 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~S  158 (206)
                      +|+|++++   .+.+.+    . +....      ++| +++|+||+|+.+........+++.++...++   .++++++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~-il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS  147 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----A-VLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS  147 (581)
T ss_pred             EEEECCCCCcHHHHHHH----H-HHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence            99999973   333322    1 11111      677 9999999999864322234456666665542   47899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHhcCc
Q 028647          159 AKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      +++|.|++++++.|.+.+....+
T Consensus       148 A~tG~GI~eL~~~L~~l~~~~~~  170 (581)
T TIGR00475       148 AKTGQGIGELKKELKNLLESLDI  170 (581)
T ss_pred             CCCCCCchhHHHHHHHHHHhCCC
Confidence            99999999999999887655443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=148.32  Aligned_cols=172  Identities=37%  Similarity=0.539  Sum_probs=135.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+++|++|+|||||+++|..+.+...+.++.+..+...........+.+.+||++|++++...+..++..+++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999988898888777777766666578899999999999999999999999999999


Q ss_pred             EECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc----------cccHHHHHHHHHhc--CCCcE
Q 028647           88 YDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----------VVSEKKARAWCASK--GNIPY  154 (206)
Q Consensus        88 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~--~~~~~  154 (206)
                      +|..+ ..+.+....|...+.....    .+.|+++++||+|+......          ....+.........  ....+
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL  160 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence            99998 5566667788877766553    26899999999999876321          11122222221111  12348


Q ss_pred             EEeecc--CCCCHHHHHHHHHHHHHhcCccc
Q 028647          155 FETSAK--EGINVEEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       155 ~~~S~~--~~~~i~~l~~~l~~~~~~~~~~~  183 (206)
                      +++|++  .+.++++++..+++.+.......
T Consensus       161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         161 LETSAKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             eEeecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            999999  99999999999999997654333

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=3.8e-23  Score=158.99  Aligned_cols=164  Identities=24%  Similarity=0.296  Sum_probs=111.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-ccc-------hhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSL-------GVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~-------~~~   76 (206)
                      ++.++|+++|.+|+|||||+|+|++..+.. ...+.++.......+..++  .++.||||||.... ...       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            456799999999999999999999887652 2233344444444555555  46799999997432 211       223


Q ss_pred             hhccCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-CCCcE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-GNIPY  154 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  154 (206)
                      .+..+|++++|+|..+.  ++... .++..+...       +.|.++|+||+|+.+.     ...++.+++... ....+
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~-------~~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~~~~i  193 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL-------NIVPIFLLNKIDIESK-----YLNDIKAFLTENHPDSLL  193 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc-------CCCEEEEEEhhcCccc-----cHHHHHHHHHhcCCCcEE
Confidence            46789999999998753  23332 233333211       5677899999998642     134455555443 34679


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhcCccccc
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~  185 (206)
                      +++||++|.|+++++++|.+.+.+..+..+.
T Consensus       194 ~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~  224 (339)
T PRK15494        194 FPISALSGKNIDGLLEYITSKAKISPWLYAE  224 (339)
T ss_pred             EEEeccCccCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999988655444433

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.91  E-value=1.4e-23  Score=149.43  Aligned_cols=162  Identities=20%  Similarity=0.223  Sum_probs=110.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (206)
                      +.++|+++|+.++|||||+++|+.......                  .....+.......+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            568999999999999999999985432111                  11222333333333312334678999999999


Q ss_pred             hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH-HHHH
Q 028647           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR-AWCA  147 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~  147 (206)
                      .+.......+..+|++++|+|+.++..... ...+..+...       ++|+++++||+|+.... .....++.. .+.+
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~-------~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~  152 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL-------GIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLK  152 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT-------T-SEEEEEETCTSSHHH-HHHHHHHHHHHHHH
T ss_pred             ceeecccceecccccceeeeeccccccccc-cccccccccc-------ccceEEeeeeccchhhh-HHHHHHHHHHHhcc
Confidence            999988889999999999999987644322 2222222221       78999999999998322 122222333 4444


Q ss_pred             hcC-----CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          148 SKG-----NIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       148 ~~~-----~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ..+     .++++++||.+|.|+++|++.|.+.++
T Consensus       153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            432     357999999999999999999998874

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=2.4e-22  Score=157.24  Aligned_cols=164  Identities=20%  Similarity=0.187  Sum_probs=117.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccchhh---hhcc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVA---FYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~   80 (206)
                      ...|+++|.||||||||+++|++.+......+.+|..+....+.+.+ ...+.+||+||..+    ...+...   .+..
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            34899999999999999999998765444455556655555555542 24688999999532    1122223   3456


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           81 ADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        81 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ++++++|+|+++.   +.++....|..++......  ..+.|++||+||+|+...      .+...++.+.++ .+++++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~--L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~-~~i~~i  307 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR--LLERPQIVVANKMDLPEA------EENLEEFKEKLG-PKVFPI  307 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchh--ccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC-CcEEEE
Confidence            9999999999864   5566666666666543211  126899999999998432      344555666666 789999


Q ss_pred             eccCCCCHHHHHHHHHHHHHhcCc
Q 028647          158 SAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      ||++++|+++++++|.+.+.+.+.
T Consensus       308 SA~tgeGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        308 SALTGQGLDELLYAVAELLEETPE  331 (424)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999988866543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=8.2e-23  Score=163.88  Aligned_cols=155  Identities=20%  Similarity=0.290  Sum_probs=109.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hccchhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (206)
                      ...+|+|+|.+|||||||+|+|++.... ....++.+.+.......+.+.  .+.+|||||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4578999999999999999999987643 344555555555555566664  578999999652        33345567


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ++.+|++|+|+|++++.+... ..+...+..       .+.|+++|+||+|+....     .+....+.  .+....+++
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~-----~~~~~~~~--~g~~~~~~i  179 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE-----ADAAALWS--LGLGEPHPV  179 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc-----hhhHHHHh--cCCCCeEEE
Confidence            889999999999998755432 233333321       178999999999986431     11222222  232345799


Q ss_pred             eccCCCCHHHHHHHHHHHHHh
Q 028647          158 SAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ||++|.|+++++++|++.+.+
T Consensus       180 SA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        180 SALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EcCCCCCcHHHHHHHHhhccc
Confidence            999999999999999998865

>COG1159 Era GTPase [General function prediction only]

Probab=99.91  E-value=5e-23  Score=150.31  Aligned_cols=168  Identities=20%  Similarity=0.111  Sum_probs=116.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hccchhhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY   78 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   78 (206)
                      +.--|+++|.||+|||||+|++++.+..-......|++.....+...+ ..++.|+||||...        ........+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            446789999999999999999999988744433333333344443333 47899999999332        223344566


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                      ..+|+++||+|++++...  ...+..+.+..      .+.|+++++||+|.....  .........+....+...++++|
T Consensus        84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~------~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~~ivpiS  153 (298)
T COG1159          84 KDVDLILFVVDADEGWGP--GDEFILEQLKK------TKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFKEIVPIS  153 (298)
T ss_pred             ccCcEEEEEEeccccCCc--cHHHHHHHHhh------cCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcceEEEee
Confidence            789999999999974321  22222222221      167999999999988752  22245555555566778899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHhcCccccc
Q 028647          159 AKEGINVEEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~~~~~~~~~  185 (206)
                      |.+|.|++.|.+.+..++.+..+..+.
T Consensus       154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~  180 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYLPEGPWYYPE  180 (298)
T ss_pred             ccccCCHHHHHHHHHHhCCCCCCcCCh
Confidence            999999999999999998665554443

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=2.1e-22  Score=156.75  Aligned_cols=169  Identities=18%  Similarity=0.099  Sum_probs=120.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhcc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   80 (206)
                      ...|+++|.||||||||+|+|++.+......+.+|..+....+.+.+. ..+.++|+||..+-       .......+..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            347999999999999999999987765555666776666666666542 35789999995431       1122345678


Q ss_pred             CcEEEEEEECC---ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEE
Q 028647           81 ADCCVLVYDVN---SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFE  156 (206)
Q Consensus        81 ~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (206)
                      +|++++|+|++   +.+.++....|+.++......  ..+.|+++|+||+|+...   ....+.+.++...++. .++++
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~---~el~~~l~~l~~~~~~~~~Vi~  312 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDE---EEAEERAKAIVEALGWEGPVYL  312 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCCh---HHHHHHHHHHHHHhCCCCCEEE
Confidence            99999999988   445566666666666543211  116799999999998753   2223444555554442 37899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647          157 TSAKEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      +||+++.|++++++.|.+.+.+..+.
T Consensus       313 ISA~tg~GIdeLl~~I~~~L~~~~~~  338 (390)
T PRK12298        313 ISAASGLGVKELCWDLMTFIEENPRE  338 (390)
T ss_pred             EECCCCcCHHHHHHHHHHHhhhCccc
Confidence            99999999999999999998765443

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=2.5e-22  Score=152.33  Aligned_cols=162  Identities=21%  Similarity=0.151  Sum_probs=109.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh--------ccchhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--------QSLGVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~   77 (206)
                      +.-.|+|+|++|||||||+|+|++...... ..+.++..........+  ..++.++||||....        .......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            345799999999999999999998876532 23333222222222222  267899999995332        2233446


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|+++..+ ......+..+.    .   .+.|+++|+||+|+...  .....+....+....+...++++
T Consensus        82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~----~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~i  151 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG-PGDEFILEKLK----K---VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPI  151 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC-hhHHHHHHHHh----h---cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEe
Confidence            678999999999987322 11122222221    1   16799999999999743  23344555566665666789999


Q ss_pred             eccCCCCHHHHHHHHHHHHHhcC
Q 028647          158 SAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ||+++.|+++++++|.+.+....
T Consensus       152 SA~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        152 SALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             cCCCCCCHHHHHHHHHHhCCCCC
Confidence            99999999999999999886544

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=2.6e-22  Score=138.65  Aligned_cols=146  Identities=23%  Similarity=0.304  Sum_probs=104.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc--------chhhhhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYR   79 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   79 (206)
                      ++|+++|++|+|||||++++.+.... ....++.+.......+..++  ..+.+|||||...+..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            68999999999999999999987643 22234444444444455554  5678999999654432        1234567


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      .+|++++|+|++++.+......+..          ..+.|+++|+||+|+.+....         . ......+++++|+
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~---------~-~~~~~~~~~~~Sa  139 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL---------L-SLLAGKPIIAISA  139 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc---------c-cccCCCceEEEEC
Confidence            8999999999998776555433222          117899999999999764221         2 2223478999999


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKNA  176 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~  176 (206)
                      .++.|+++++++|.+.+
T Consensus       140 ~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         140 KTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.90  E-value=8.8e-23  Score=146.87  Aligned_cols=163  Identities=13%  Similarity=0.139  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEEEeC---------------------------C----
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFE---------------------------D----   54 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   54 (206)
                      ++|+++|+.|+|||||+..+.+...   ........+.........+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975421   11111111111111111110                           1    


Q ss_pred             eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS  134 (206)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  134 (206)
                      ....+.|||+||+..+...+...+..+|++++|+|++++.........+..+ ....     ..|+++|+||+|+.+...
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~~-----~~~iiivvNK~Dl~~~~~  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIMG-----LKHIIIVQNKIDLVKEEQ  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHcC-----CCcEEEEEEchhccCHHH
Confidence            1157899999999998888888888999999999998742111111122212 1111     247999999999976422


Q ss_pred             ccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          135 RVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      .....+.++++...+  ..++++++||++|+|+++++++|.+.+.
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            222334445544432  2478999999999999999999988663

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.6e-22  Score=159.03  Aligned_cols=169  Identities=21%  Similarity=0.145  Sum_probs=116.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYR   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   79 (206)
                      ...+|+|+|.||||||||+++|+..+......+.+|..+....+.+.+  ..+.+||+||..+.       .......+.
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            357899999999999999999998765544556666666666666666  56899999995321       111233457


Q ss_pred             cCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCC-------CCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh
Q 028647           80 GADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPS-------DPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS  148 (206)
Q Consensus        80 ~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~-------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (206)
                      .+|++++|+|+++.    +.++.+..+..++.......       ...+.|++||+||+|+.+.  .. ..+........
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~e-l~e~l~~~l~~  312 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RE-LAEFVRPELEA  312 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HH-HHHHHHHHHHH
Confidence            79999999999753    23444444444443332210       1226899999999999754  21 22333333344


Q ss_pred             cCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          149 KGNIPYFETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       149 ~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      .+ ++++++||.+++|+++++++|.+.+...+.
T Consensus       313 ~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        313 RG-WPVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             cC-CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            44 789999999999999999999998866543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=2.6e-22  Score=160.02  Aligned_cols=164  Identities=21%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-----------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------   73 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   73 (206)
                      ...++|+++|.+|+|||||+++|++.... ....++++.+.....+..++.  .+.+|||||.......           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            34689999999999999999999986533 333444555554555555554  6789999996443322           


Q ss_pred             hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CcccccHHHHHHHHHhcCCC
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-NSRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~  152 (206)
                      ....++.+|++++|+|++++.+.... .++..+...       +.|+++|+||+|+... .......+.+.......+.+
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~~-------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  319 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDL-RIAGLILEA-------GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFA  319 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHc-------CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCC
Confidence            23467889999999999987665543 222222211       6899999999999721 11111122222222233458


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +++++||++|.|++++++++.+.+...
T Consensus       320 ~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       320 PIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=3.4e-22  Score=158.07  Aligned_cols=153  Identities=20%  Similarity=0.280  Sum_probs=113.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   76 (206)
                      +..++|+++|++|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||...+...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            45689999999999999999999987542 33456666777777777776  45689999997544322        245


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++++|+|++++.+++..  |+..+..       .+.|+++|+||+|+.+.        ....+...++ .+++.
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~--------~~~~~~~~~~-~~~~~  340 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN--------SLEFFVSSKV-LNSSN  340 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc--------chhhhhhhcC-CceEE
Confidence            77899999999999988776654  5444321       16799999999998643        1123344444 67899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhc
Q 028647          157 TSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +|+++ .|++++++.+.+.+.+.
T Consensus       341 vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHHHHH
Confidence            99997 69999999999988664

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=3.1e-22  Score=163.46  Aligned_cols=161  Identities=19%  Similarity=0.259  Sum_probs=115.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-------CCCC------CCccceeEEEE--EEEe---CCeEEEEEEEeCCChh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKF-------SNQY------KATIGADFLTK--EVQF---EDRLFTLQIWDTAGQE   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~-------~~~~------~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~   68 (206)
                      ...|++++|+.++|||||+++|+...-       ...+      +...+.++...  .+.+   ++..+.+.||||||+.
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            357999999999999999999986421       1111      11123333332  2333   4566889999999999


Q ss_pred             hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh
Q 028647           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS  148 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (206)
                      .|...+..+++.+|++++|+|++++.+.+....|...+.        .++|+++|+||+|+.+...    .+...++...
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~~----~~~~~el~~~  149 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSADP----ERVKKEIEEV  149 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccCH----HHHHHHHHHH
Confidence            999999999999999999999998766666555543321        1679999999999875321    2222333333


Q ss_pred             cC--CCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          149 KG--NIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       149 ~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ++  ...++++||++|.|+++++++|.+.++..
T Consensus       150 lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       150 IGLDASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             hCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            33  13589999999999999999999987554

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=1e-22  Score=143.48  Aligned_cols=159  Identities=21%  Similarity=0.197  Sum_probs=104.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh----ccc---hhhhhccCcEEE
Q 028647           13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGADCCV   85 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~i   85 (206)
                      ++|++|||||||+++|.+........+.++.......+.+.+ ...+.+||+||....    ...   ....+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998765322233333334333444441 256799999996321    112   234567899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHhhcCC---CCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           86 LVYDVNSM------KSFDNLNNWREEFLIQASP---SDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        86 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +|+|+.++      .+++....|...+......   ....+.|+++|+||+|+....  ........... .....++++
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~-~~~~~~~~~  156 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEELVRELA-LEEGAEVVP  156 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh--HHHHHHHHHHh-cCCCCCEEE
Confidence            99999987      4666666666665433211   001268999999999997642  22121122222 223478999


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~  175 (206)
                      +|++++.|++++++++.+.
T Consensus       157 ~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         157 ISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EehhhhcCHHHHHHHHHhh
Confidence            9999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=3.4e-22  Score=162.55  Aligned_cols=156  Identities=24%  Similarity=0.257  Sum_probs=112.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .++.+|+++|++++|||||+++|.+..+.....++.+.+.....+.+.+.. .+.||||||++.|...+...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            456899999999999999999999887776555555555555555554432 6889999999999988888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-------hcC-CCcEEEe
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-------SKG-NIPYFET  157 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~  157 (206)
                      +|+|+++....+....+ ....    .   .++|+++++||+|+.+..     .++....+.       .++ ..+++++
T Consensus       164 LVVda~dgv~~qT~e~i-~~~~----~---~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~i  230 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI-SHAK----A---ANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPV  230 (587)
T ss_pred             EEEECCCCCCHhHHHHH-HHHH----H---cCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence            99999874322222211 1111    1   178999999999997532     122222222       222 2579999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~  175 (206)
                      ||++|+|+++++++|...
T Consensus       231 SAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       231 SALTGDGIDELLDMILLQ  248 (587)
T ss_pred             ECCCCCChHHHHHhhhhh
Confidence            999999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=2.5e-22  Score=132.68  Aligned_cols=114  Identities=33%  Similarity=0.552  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      ||+|+|++|||||||+++|.+..+.  .......+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            6999999999999999999988866  23344444555555666677666799999999998888888889999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           88 YDVNSMKSFDNLNNW---REEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                      ||++++.+++.+..+   +..+.....     ++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDK-----NIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSS-----CSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCC-----CCCEEEEEeccC
Confidence            999999999987554   444443222     689999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=4.7e-22  Score=142.56  Aligned_cols=160  Identities=24%  Similarity=0.188  Sum_probs=106.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh----------hhhccch
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLG   74 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~   74 (206)
                      ....++|+++|.+|+|||||+++|++..+.....++.+.+........   ...+.+|||||.          ..+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            345689999999999999999999987644444444443333322222   257899999994          2333334


Q ss_pred             hhhhcc---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647           75 VAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN  151 (206)
Q Consensus        75 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+++.   .+++++++|.+++.+.... .+. .....      .+.|+++++||+|+.+....+...+.+.++.... .
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~-~~l~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~  168 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMI-EWLKE------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-D  168 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHH-HHHHH------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-C
Confidence            444443   4678888998875443221 111 11111      1679999999999976533333344455555544 3


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          152 IPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       152 ~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      .+++++|++++.|++++++.|.+.+
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999998776

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.90  E-value=2.3e-22  Score=142.13  Aligned_cols=152  Identities=19%  Similarity=0.176  Sum_probs=100.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh----------hhccc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSL   73 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~   73 (206)
                      ++...++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+..++   .+.+||+||..          .+...
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            346678999999999999999999998764333333443333333333332   57899999942          23333


Q ss_pred             hhhhhc---cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647           74 GVAFYR---GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG  150 (206)
Q Consensus        74 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      ...+++   .++++++|+|++++.+.... .++..+. .      .+.|+++++||+|+..........+++++.+....
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~-~------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~  162 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR-E------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA  162 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH-H------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence            334444   36899999999876543433 2222221 1      17899999999999765434445566666666543


Q ss_pred             -CCcEEEeeccCCCCHH
Q 028647          151 -NIPYFETSAKEGINVE  166 (206)
Q Consensus       151 -~~~~~~~S~~~~~~i~  166 (206)
                       .++++++||++|+|++
T Consensus       163 ~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       163 DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCCceEEEECCCCCCCC
Confidence             2589999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=2.7e-22  Score=138.64  Aligned_cols=147  Identities=20%  Similarity=0.175  Sum_probs=100.2

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc--------chhhhhccCc
Q 028647           12 IILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD   82 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d   82 (206)
                      +++|.+|+|||||+++|.+.... ....+..+.+.........+  ..+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999976522 12233334444444455555  5689999999776443        3345678899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|+|+.++.+.... .+...+ ..   .   +.|+++|+||+|+.+..  ..     .......+..+++++|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~-~~---~---~~piiiv~nK~D~~~~~--~~-----~~~~~~~~~~~~~~~Sa~~~  143 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYL-RK---S---KKPVILVVNKVDNIKEE--DE-----AAEFYSLGFGEPIPISAEHG  143 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHH-Hh---c---CCCEEEEEECcccCChH--HH-----HHHHHhcCCCCeEEEecccC
Confidence            99999999876443332 111212 11   1   68999999999997642  11     12223344347899999999


Q ss_pred             CCHHHHHHHHHHH
Q 028647          163 INVEEAFQCIAKN  175 (206)
Q Consensus       163 ~~i~~l~~~l~~~  175 (206)
                      .|+++++++|.++
T Consensus       144 ~gv~~l~~~l~~~  156 (157)
T cd01894         144 RGIGDLLDAILEL  156 (157)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.90  E-value=3.2e-22  Score=157.43  Aligned_cols=162  Identities=18%  Similarity=0.184  Sum_probs=111.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh--ccc------hhhhhcc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSL------GVAFYRG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~------~~~~~~~   80 (206)
                      .+|+++|.+|+|||||+|+|++..+.....++.|.+.....+.+.+. ..+.+|||+|....  ...      +...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987765445556666666666666553 25679999996321  111      2234678


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEeec
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP-YFETSA  159 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~  159 (206)
                      +|++++|+|++++.+.+....|...+.....    .+.|+++|+||+|+....  ..   ....  ...+ .+ ++.+||
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~----~~~pvIiV~NKiDL~~~~--~~---~~~~--~~~~-~~~~v~ISA  344 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDA----HEIPTLLVMNKIDMLDDF--EP---RIDR--DEEN-KPIRVWLSA  344 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhcc----CCCCEEEEEEcccCCCch--hH---HHHH--HhcC-CCceEEEeC
Confidence            9999999999998877766444333322211    268999999999986531  11   1111  1122 33 588999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCccc
Q 028647          160 KEGINVEEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~~~~~~  183 (206)
                      ++|.|+++++++|.+.+.......
T Consensus       345 ktG~GIdeL~e~I~~~l~~~~~~~  368 (426)
T PRK11058        345 QTGAGIPLLFQALTERLSGEVAQH  368 (426)
T ss_pred             CCCCCHHHHHHHHHHHhhhccEEE
Confidence            999999999999999986544333

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=2.9e-22  Score=159.30  Aligned_cols=149  Identities=26%  Similarity=0.323  Sum_probs=112.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (206)
                      ..++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            4589999999999999999999987643 34456666666666777766  46789999997544322        2346


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|++++.+++....|..          ..+.|+++|+||+|+.+..  ...         .....+++++
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~--~~~---------~~~~~~~i~i  350 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEI--DLE---------EENGKPVIRI  350 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccc--hhh---------hccCCceEEE
Confidence            788999999999998877664433322          1278999999999997542  111         2223679999


Q ss_pred             eccCCCCHHHHHHHHHHHHHh
Q 028647          158 SAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      |+++|.|+++++++|.+.+..
T Consensus       351 SAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        351 SAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EeeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999998864

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=3e-22  Score=153.90  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=114.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh---------ccchhhhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFY   78 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   78 (206)
                      ..|+++|.||+|||||+|+|++.+.. .+..|++|.+.......+.+..  +.++||+|.+..         ......++
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999998876 5667888888878888888854  889999994422         23445677


Q ss_pred             ccCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           79 RGADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      ..+|++|||+|....-+-  +.+.+++...          ++|+++|+||+|-..      ..+...+| -.++...++.
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~----------~kpviLvvNK~D~~~------~e~~~~ef-yslG~g~~~~  144 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILRRS----------KKPVILVVNKIDNLK------AEELAYEF-YSLGFGEPVP  144 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHHhc----------CCCEEEEEEcccCch------hhhhHHHH-HhcCCCCceE
Confidence            889999999999874332  2233332211          689999999999542      22333333 4566678999


Q ss_pred             eeccCCCCHHHHHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      +||.+|.|+.+|++.+++.+.
T Consensus       145 ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         145 ISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             eehhhccCHHHHHHHHHhhcC
Confidence            999999999999999999984

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=2.4e-22  Score=138.99  Aligned_cols=143  Identities=20%  Similarity=0.223  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh----hhccchhhhhccCcEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV   85 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i   85 (206)
                      +|+++|.+|+|||||+++|.+....  ...+.       ...+...    .+||+||..    .+.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998865311  11111       1222222    269999962    33333344578999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEeeccCCCC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFETSAKEGIN  164 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~  164 (206)
                      +|+|+++.+++.  ..|+..+   .     .+.|+++++||+|+.+.     ..+...+++...+. .+++++|+++|+|
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~---~-----~~~~ii~v~nK~Dl~~~-----~~~~~~~~~~~~~~~~p~~~~Sa~~g~g  134 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI---G-----VSKRQIAVISKTDMPDA-----DVAATRKLLLETGFEEPIFELNSHDPQS  134 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc---c-----CCCCeEEEEEccccCcc-----cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence            999999876642  2233222   1     16799999999998652     24556666666653 5899999999999


Q ss_pred             HHHHHHHHHHHHHhcC
Q 028647          165 VEEAFQCIAKNALKSG  180 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~  180 (206)
                      ++++++++.+.+.+..
T Consensus       135 i~~l~~~l~~~~~~~~  150 (158)
T PRK15467        135 VQQLVDYLASLTKQEE  150 (158)
T ss_pred             HHHHHHHHHHhchhhh
Confidence            9999999988875543

>cd04163 Era Era subfamily

Probab=99.89  E-value=1.4e-21  Score=136.20  Aligned_cols=157  Identities=21%  Similarity=0.157  Sum_probs=104.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc--------cchhhhhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYR   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   79 (206)
                      ..+|+++|++|+|||||++++.+...........+...... .........+.+||+||.....        ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            47899999999999999999998764422221111111111 1122233578899999954322        23344578


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      .+|++++|+|+.++.+ .....+...+...       +.|+++|+||+|+...  .....+....+....+..+++.+|+
T Consensus        82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~-------~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s~  151 (168)
T cd04163          82 DVDLVLFVVDASEPIG-EGDEFILELLKKS-------KTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPISA  151 (168)
T ss_pred             hCCEEEEEEECCCccC-chHHHHHHHHHHh-------CCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEEe
Confidence            8999999999998722 1112222222211       5799999999998743  3333444555555555578999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKN  175 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~  175 (206)
                      +++.|++++++.|.+.
T Consensus       152 ~~~~~~~~l~~~l~~~  167 (168)
T cd04163         152 LKGENVDELLEEIVKY  167 (168)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.89  E-value=1.3e-21  Score=137.25  Aligned_cols=157  Identities=22%  Similarity=0.246  Sum_probs=103.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----------chh
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LGV   75 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   75 (206)
                      +++|+++|.+|+|||||+++|++..... ...+..+.......+..++.  .+.+||+||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5799999999999999999999875432 22333333333344455553  467999999543211           122


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---CCC
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---GNI  152 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  152 (206)
                      ..+..+|++++|+|+.++.+.... .++..+..       .+.|+++++||+|+.+... ....+....+...+   +..
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-------~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~  150 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE-------EGKALVIVVNKWDLVEKDS-KTMKEFKKEIRRKLPFLDYA  150 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh-------cCCCEEEEEeccccCCccH-HHHHHHHHHHHhhcccccCC
Confidence            356789999999999987664433 22222211       1679999999999976521 11111122222322   247


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHH
Q 028647          153 PYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      +++++|++++.|++++++++.+.
T Consensus       151 ~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         151 PIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ceEEEeccCCCCHHHHHHHHHHh
Confidence            89999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.89  E-value=5.1e-22  Score=156.37  Aligned_cols=171  Identities=16%  Similarity=0.157  Sum_probs=113.0

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEEEe------------------C--C---
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQF------------------E--D---   54 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~---   54 (206)
                      |+.+.++.++|+++|+.++|||||+.+|.+....   .......+.........+                  +  +   
T Consensus         2 ~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (411)
T PRK04000          2 MWEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET   81 (411)
T ss_pred             CcccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence            7889999999999999999999999999653211   111222222221111000                  0  0   


Q ss_pred             -eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           55 -RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        55 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                       ....+.|||+||+..+.......+..+|++++|+|++++. ..+... .+..+ ....     ..|+++|+||+|+.+.
T Consensus        82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l-~~~~-----i~~iiVVlNK~Dl~~~  154 (411)
T PRK04000         82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMAL-DIIG-----IKNIVIVQNKIDLVSK  154 (411)
T ss_pred             ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHH-HHcC-----CCcEEEEEEeeccccc
Confidence             1257899999999988877777777899999999999643 212111 11111 1111     2368999999999764


Q ss_pred             CcccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          133 NSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      .......+++..+....  ...+++++||++|.|++++++.|.+.+..
T Consensus       155 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        155 ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            32222334555555432  24789999999999999999999987643

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6e-22  Score=128.13  Aligned_cols=159  Identities=18%  Similarity=0.331  Sum_probs=123.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .++++|+.+|-.++||||++.+|..... ....|++|  +.+..+.+.+  +.+.+||.+|++..+..|.+++....++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            3479999999999999999999986552 34455555  4444555556  77899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~  161 (206)
                      ||+|.++.+..+.+..-++.++   +.....+.|++|.+||.|++.+...    +++.++..    ....+.+.++++.+
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii---~~~em~~~~~LvlANkQDlp~A~~p----qei~d~leLe~~r~~~W~vqp~~a~~  162 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRII---NDREMRDAIILILANKQDLPDAMKP----QEIQDKLELERIRDRNWYVQPSCALS  162 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHh---CCHhhhcceEEEEecCcccccccCH----HHHHHHhccccccCCccEeecccccc
Confidence            9999998877777666555554   4444558899999999999987533    33333322    22247789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028647          162 GINVEEAFQCIAKNA  176 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~  176 (206)
                      |+|+.+-+.||.+..
T Consensus       163 gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  163 GDGLKEGLSWLSNNL  177 (180)
T ss_pred             chhHHHHHHHHHhhc
Confidence            999999999998865

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.89  E-value=1.4e-21  Score=161.23  Aligned_cols=162  Identities=22%  Similarity=0.287  Sum_probs=112.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      .+..+|+|+|+.++|||||+++|....+.....++.+..  .+...+...+....+.||||||+..|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            466899999999999999999999877664443333332  223333344445789999999999999999889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH---HHhcC-CCcEEEeec
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW---CASKG-NIPYFETSA  159 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~S~  159 (206)
                      +|+|+|+++....+....+ ..+.       ..++|+++++||+|+.+... ....+++..+   ...++ .++++++||
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~k-------~~~iPiIVViNKiDl~~~~~-e~v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYIQ-------AANVPIIVAINKIDKANANT-ERIKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHHH-------hcCceEEEEEECCCccccCH-HHHHHHHHHhccchHhhCCCceEEEEEC
Confidence            9999999875332222221 1111       11789999999999976421 1111111111   12222 368999999


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKNA  176 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~  176 (206)
                      ++|.|+++++++|....
T Consensus       393 ktG~GIdeLle~I~~l~  409 (742)
T CHL00189        393 SQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCHHHHHHhhhhhh
Confidence            99999999999998764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.89  E-value=2.1e-21  Score=139.56  Aligned_cols=122  Identities=18%  Similarity=0.307  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccC-cEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~   88 (206)
                      +|+++|++|||||||+++|....+...+.++ +...........+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988766554333 2222221221113346789999999999988888889998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           89 DVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        89 d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                      |+.+. .++.....++..++...... ..++|+++++||+|+..+.
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~-~~~~pvliv~NK~Dl~~a~  125 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKV-KNKIPVLIACNKQDLFTAK  125 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhc-cCCCCEEEEecchhhcccC
Confidence            99987 67777777776665443221 1378999999999997654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=1.2e-21  Score=162.93  Aligned_cols=159  Identities=22%  Similarity=0.250  Sum_probs=112.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .++..|+|+|+.++|||||+++|....+......+.+.......+.+.+  ..+.||||||+..|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            5678999999999999999999988776655444444444444455555  56899999999999988888888999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH---HHHhcC-CCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA---WCASKG-NIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~S~~~  161 (206)
                      +|+|+++...-+....| ...    ..   .++|+||++||+|+.+...... ..++.+   +...++ .++++++||++
T Consensus       366 LVVdAddGv~~qT~e~i-~~a----~~---~~vPiIVviNKiDl~~a~~e~V-~~eL~~~~~~~e~~g~~vp~vpvSAkt  436 (787)
T PRK05306        366 LVVAADDGVMPQTIEAI-NHA----KA---AGVPIIVAINKIDKPGANPDRV-KQELSEYGLVPEEWGGDTIFVPVSAKT  436 (787)
T ss_pred             EEEECCCCCCHhHHHHH-HHH----Hh---cCCcEEEEEECccccccCHHHH-HHHHHHhcccHHHhCCCceEEEEeCCC
Confidence            99999874322222221 111    11   1789999999999976421111 111111   122222 37899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028647          162 GINVEEAFQCIAKN  175 (206)
Q Consensus       162 ~~~i~~l~~~l~~~  175 (206)
                      |.|+++++++|...
T Consensus       437 G~GI~eLle~I~~~  450 (787)
T PRK05306        437 GEGIDELLEAILLQ  450 (787)
T ss_pred             CCCchHHHHhhhhh
Confidence            99999999999864

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=4.1e-21  Score=153.30  Aligned_cols=163  Identities=21%  Similarity=0.189  Sum_probs=111.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----------c
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------L   73 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~   73 (206)
                      ...++|+++|.+|+|||||+++|++... .....++++.+.....+..++  ..+.++||||......           .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3579999999999999999999997653 234445555555445555555  4578999999532211           1


Q ss_pred             hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ...+++.+|++++|+|++++.+.... .++..+...       +.|+++|+||+|+.+........+++.......+.++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~~-------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  320 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALEA-------GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAP  320 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc-------CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCC
Confidence            23467889999999999987665443 222222211       6899999999999743222222223333333345689


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          154 YFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ++++||++|.|++++++.+.+....
T Consensus       321 i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        321 IVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998876644

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=3.5e-21  Score=153.73  Aligned_cols=149  Identities=21%  Similarity=0.241  Sum_probs=106.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hccchhhhhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR   79 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   79 (206)
                      ++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            57999999999999999999987643 23344555555566666666  6789999999765        2233455678


Q ss_pred             cCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           80 GADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      .+|++++|+|+.++.+..  .+..|+...          +.|+++|+||+|+...      .+...++ ..++...++++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~piilv~NK~D~~~~------~~~~~~~-~~lg~~~~~~i  142 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS----------NKPVILVVNKVDGPDE------EADAYEF-YSLGLGEPYPI  142 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCcEEEEEECccCccc------hhhHHHH-HhcCCCCCEEE
Confidence            999999999998754432  233333321          7899999999996542      1222333 23443458999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~  176 (206)
                      ||.+|.|++++++.+.+..
T Consensus       143 Sa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        143 SAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EeeCCCCHHHHHHHHHhhC
Confidence            9999999999999998843

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=3.6e-21  Score=161.08  Aligned_cols=163  Identities=20%  Similarity=0.159  Sum_probs=113.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh---------hccc--h
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSL--G   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~--~   74 (206)
                      ..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++..  +.+|||||..+         +...  .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            3589999999999999999999988653 3445555666666666677754  56999999531         1111  2


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ...++.+|++++|+|++++.+..... ++..+..       .+.|+++|+||+|+.+........++........+..++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~-------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~i  598 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD-------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARR  598 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCE
Confidence            33468899999999999887766543 3333322       178999999999997642222222222222223345788


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +++||++|.|++++++.+.+.+.+.
T Consensus       599 i~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        599 VNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999988663

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.88  E-value=5.4e-21  Score=156.39  Aligned_cols=163  Identities=18%  Similarity=0.276  Sum_probs=113.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----------CCCccceeEEE--EEEEe---CCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----------YKATIGADFLT--KEVQF---EDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~~-----------~~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~   67 (206)
                      ++..+++++|+.++|||||+.+|+...  +...           .+...+.++..  ..+.+   ++..+.+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            456799999999999999999998632  1100           01112222222  22222   455688999999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA  147 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  147 (206)
                      ..+...+...++.+|++++|+|++++...+....|....    .    .++|+++|+||+|+.+...    .+...++..
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~----~~lpiIvViNKiDl~~a~~----~~v~~ei~~  152 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----E----NDLEIIPVLNKIDLPAADP----ERVKQEIED  152 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----H----CCCCEEEEEECCCCCcccH----HHHHHHHHH
Confidence            999988999999999999999999876555544443322    1    1789999999999875421    112223333


Q ss_pred             hcC--CCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          148 SKG--NIPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       148 ~~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      .++  ...++++||++|.|+++++++|.+.++...
T Consensus       153 ~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        153 VIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            333  134899999999999999999999886543

>cd00880 Era_like Era (E

Probab=99.87  E-value=4.4e-21  Score=132.55  Aligned_cols=154  Identities=18%  Similarity=0.158  Sum_probs=104.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-------chhhhhccCcEE
Q 028647           13 ILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVAFYRGADCC   84 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~   84 (206)
                      ++|++|+|||||++++++.... .......+............ ...+.+||+||......       .....+..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987554 33333333333333333332 35789999999655433       344577899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|+.++....... +......       .+.|+++|+||+|+..........+............+++++|+.++.|
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  151 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE-------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG  151 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh-------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence            9999999877655543 2222211       1789999999999886532222111122233344458899999999999


Q ss_pred             HHHHHHHHHHH
Q 028647          165 VEEAFQCIAKN  175 (206)
Q Consensus       165 i~~l~~~l~~~  175 (206)
                      ++++++++.+.
T Consensus       152 v~~l~~~l~~~  162 (163)
T cd00880         152 IDELREALIEA  162 (163)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=6.9e-21  Score=151.81  Aligned_cols=151  Identities=20%  Similarity=0.260  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh--------hhhccchhhhhcc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG   80 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~   80 (206)
                      +|+++|.+|+|||||+|+|++.... ....++.+.+.......+.+  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987643 23344555555555666666  45899999995        3344556667889


Q ss_pred             CcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647           81 ADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                      +|++++|+|+.++.+...  +..++...          +.|+++|+||+|+.....      ...++ ..++..+++++|
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~~~----------~~piilVvNK~D~~~~~~------~~~~~-~~lg~~~~~~vS  141 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLRKS----------GKPVILVANKIDGKKEDA------VAAEF-YSLGFGEPIPIS  141 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHHh----------CCCEEEEEECccCCcccc------cHHHH-HhcCCCCeEEEe
Confidence            999999999987544332  23333221          789999999999875421      11222 345545799999


Q ss_pred             ccCCCCHHHHHHHHHHHHHhc
Q 028647          159 AKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      |.+|.|++++++.+.+.+...
T Consensus       142 a~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       142 AEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             CCcCCChHHHHHHHHHhcCcc
Confidence            999999999999999887553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=9e-21  Score=145.85  Aligned_cols=163  Identities=23%  Similarity=0.181  Sum_probs=122.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccc--h
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSL--G   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~--~   74 (206)
                      .+++|+++|.||+|||||+|+|++.... ....+++|.+.....+.++++.  +.++||+|..         ++.+.  .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999986544 5667777888888888888854  6789999932         12222  3


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--CcccccHHHHHHHHHhcCCC
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG--NSRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~  152 (206)
                      ...+..+|++++|+|+..+.+-+.. +.+..+...       +.++++|+||+|+.+.  .......+++.......+++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~-------g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a  326 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA-------GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA  326 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc-------CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence            4566789999999999987663332 223333222       7899999999999875  23344455566666667789


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +++++||.+|.+++++++.+....-..
T Consensus       327 ~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         327 PIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             eEEEEEecCCCChHHHHHHHHHHHHHh
Confidence            999999999999999999988766443

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.87  E-value=4.7e-21  Score=126.13  Aligned_cols=173  Identities=23%  Similarity=0.431  Sum_probs=143.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ++.-.++|.++|.+..|||||+-+++++.+...+..+.|.+...+++.+.+..+.+.+||.+|+.++......+...+-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            34557999999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc---ccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS---RVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      ++++||++.+.++..+..|+.+-......    -+| |+|++|.|..-.-+   ......+.+.+++..+ ++.+++|+.
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nkt----AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~Sts  169 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLNKT----AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFCSTS  169 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccCCc----cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEeecc
Confidence            99999999999999999999877544321    345 56799998632211   1222334555666666 899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCcc
Q 028647          161 EGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      ++.|++++|..++..+..-+..
T Consensus       170 ~sINv~KIFK~vlAklFnL~~t  191 (205)
T KOG1673|consen  170 HSINVQKIFKIVLAKLFNLPWT  191 (205)
T ss_pred             ccccHHHHHHHHHHHHhCCcee
Confidence            9999999999999988765443

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.87  E-value=3.7e-20  Score=121.64  Aligned_cols=172  Identities=26%  Similarity=0.368  Sum_probs=136.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhh-ccchhhhhccC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERF-QSLGVAFYRGA   81 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~   81 (206)
                      .+..+|+|+|..++|||+++..|+.+.-.  ..+.+|.. +.+...+.. ++..-+++++||.|-... ..+-++++.-+
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence            45689999999999999999998865543  34556654 444555544 344457899999996555 66678888999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (206)
                      |++++||+..+++||+.+..+-..|.....   ...+|++|++||.|+.++  +.+..+.++.|+..-. +..+++++.+
T Consensus        86 DafVLVYs~~d~eSf~rv~llKk~Idk~Kd---KKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk-vkl~eVta~d  159 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVELLKKEIDKHKD---KKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK-VKLWEVTAMD  159 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHhhccc---cccccEEEEechhhcccc--hhcCHHHHHHHHhhhh-eeEEEEEecc
Confidence            999999999999999988776666655333   236899999999999876  8888999999998887 9999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCcccc
Q 028647          162 GINVEEAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~~~~~~  184 (206)
                      ...+-+.|.++...+.....+..
T Consensus       160 R~sL~epf~~l~~rl~~pqskS~  182 (198)
T KOG3883|consen  160 RPSLYEPFTYLASRLHQPQSKST  182 (198)
T ss_pred             chhhhhHHHHHHHhccCCccccc
Confidence            99999999999998866444433

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.87  E-value=3e-21  Score=153.31  Aligned_cols=157  Identities=19%  Similarity=0.206  Sum_probs=105.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC--CC-----------------------------CCCCCccceeEEEEEEEe
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS-----------------------------NQYKATIGADFLTKEVQF   52 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~   52 (206)
                      ..++.++|+++|+.++|||||+++|+...  ..                             .....+.+.+.....  +
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~   80 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--F   80 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--E
Confidence            46778999999999999999999997521  11                             111223444444433  4


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWRE-EFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                      ......+.|||+||+..+.......+..+|++++|+|++++++......+.. .+.....     ..|+++++||+|+.+
T Consensus        81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVN  155 (426)
T ss_pred             ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccC
Confidence            4444688999999999888777777889999999999998743211111111 1122211     347999999999975


Q ss_pred             CCc--ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647          132 GNS--RVVSEKKARAWCASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      ...  .....+++.+++...+    .++++++||++|.|+.+
T Consensus       156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            321  1233456666666554    36899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.87  E-value=1.7e-20  Score=133.63  Aligned_cols=151  Identities=19%  Similarity=0.139  Sum_probs=99.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (206)
                      .++|+++|+.++|||||+++|+.....              ...+...+.+.......+.....++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            589999999999999999999753100              000112223333333444444567899999999988888


Q ss_pred             hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHHHhcC-
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWCASKG-  150 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-  150 (206)
                      ....+..+|++++|+|+.....-. ....+..+...       ++| +|+++||+|+...... ....+++..+....+ 
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~  153 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF  153 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            888889999999999998643222 12222222111       666 7899999998643211 123345666655543 


Q ss_pred             ---CCcEEEeeccCCCCHH
Q 028647          151 ---NIPYFETSAKEGINVE  166 (206)
Q Consensus       151 ---~~~~~~~S~~~~~~i~  166 (206)
                         .++++++||.+|.|+.
T Consensus       154 ~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         154 DGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             cccCCeEEEeeCccccCCC
Confidence               3789999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.87  E-value=3.6e-21  Score=151.68  Aligned_cols=166  Identities=16%  Similarity=0.151  Sum_probs=108.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEE--------------EEe----CC------eEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKE--------------VQF----ED------RLFT   58 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~   58 (206)
                      ++.++|+++|++++|||||++.|.+....   .......+.......              +..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            56799999999999999999999753221   111111111111000              000    11      1357


Q ss_pred             EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc
Q 028647           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS  138 (206)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  138 (206)
                      +.+||+||++.|...+...+..+|++++|+|++++.........+..+ ....     ..|+++++||+|+.+.......
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCHHHHHHH
Confidence            899999999999888888888999999999999643111122222222 1111     2368999999999864322223


Q ss_pred             HHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          139 EKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       139 ~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      .+++.++....  ..++++++|+++|+|+++++++|...+.
T Consensus       156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            34455554432  2378999999999999999999998764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.87  E-value=2e-20  Score=156.36  Aligned_cols=153  Identities=20%  Similarity=0.247  Sum_probs=109.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc----------hhhh
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF   77 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~   77 (206)
                      .++|+++|.||+|||||+|+|++........++.+.+.  .+..+......+.++|+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~--k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVER--KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEee--EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            37899999999999999999998765433334444433  33334444467899999997665421          1223


Q ss_pred             h--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647           78 Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        78 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      +  ..+|++++|+|+++.+...   .+..++...       ++|+++++||+|+.+..  . ...+.+++.+.++ .+++
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~-------giPvIvVlNK~Dl~~~~--~-i~id~~~L~~~LG-~pVv  146 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL-------GIPCIVALNMLDIAEKQ--N-IRIDIDALSARLG-CPVI  146 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHHc-------CCCEEEEEEchhhhhcc--C-cHHHHHHHHHHhC-CCEE
Confidence            2  3799999999999865422   233333221       78999999999987542  2 2345566667776 8999


Q ss_pred             EeeccCCCCHHHHHHHHHHHH
Q 028647          156 ETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      ++|+.+++|++++++.+.+..
T Consensus       147 piSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        147 PLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEEeecCCCHHHHHHHHHHhh
Confidence            999999999999999998765

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.87  E-value=2.9e-21  Score=153.40  Aligned_cols=159  Identities=19%  Similarity=0.227  Sum_probs=104.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEEe
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVQF   52 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   52 (206)
                      ..++.++|+++|++++|||||+++|+...-.                               .+..++.+.+.....  +
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~--~   79 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK--F   79 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--E
Confidence            3567799999999999999999999843211                               111334444444333  4


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ....+.+.+|||||+..+.......+..+|++++|+|++++........+...+.....     ..|+++++||+|+.+.
T Consensus        80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~~  154 (425)
T PRK12317         80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVNY  154 (425)
T ss_pred             ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEccccccc
Confidence            34447899999999988877766777899999999999872111111111111111111     2369999999999753


Q ss_pred             Cc--ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHHHH
Q 028647          133 NS--RVVSEKKARAWCASKG----NIPYFETSAKEGINVEEAF  169 (206)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~l~  169 (206)
                      ..  .....+++.+++...+    .++++++||.+|+|++++.
T Consensus       155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            21  1223455566665554    2679999999999998744

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.86  E-value=1.6e-20  Score=153.80  Aligned_cols=160  Identities=19%  Similarity=0.180  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK---KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      -|+++|+.++|||||+++|++.   .+......+.+.+.....+...+. ..+.+||+||++.|...+...+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            5899999999999999999863   333344445554443333333222 357899999999998888888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccHHHHHHHHHhcC--CCcEEEeeccCCC
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSEKKARAWCASKG--NIPYFETSAKEGI  163 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~  163 (206)
                      |+|++++..-+. ...+. +....      ++| ++||+||+|+.+........+++.++....+  ..+++++|+++|.
T Consensus        81 VVda~eg~~~qT-~ehl~-il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~  152 (614)
T PRK10512         81 VVACDDGVMAQT-REHLA-ILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR  152 (614)
T ss_pred             EEECCCCCcHHH-HHHHH-HHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence            999987422111 11111 11111      556 5799999999764322333455566655443  3789999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 028647          164 NVEEAFQCIAKNALK  178 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~  178 (206)
                      |++++++.|.+....
T Consensus       153 gI~~L~~~L~~~~~~  167 (614)
T PRK10512        153 GIDALREHLLQLPER  167 (614)
T ss_pred             CCHHHHHHHHHhhcc
Confidence            999999999876543

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.86  E-value=2.3e-20  Score=130.35  Aligned_cols=153  Identities=23%  Similarity=0.254  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----------hccchhhhhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR   79 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~   79 (206)
                      .|+++|++|+|||||++.+.+..+.....++.+.+.....+..++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996555544444544444333343333   788999999432          2233333333


Q ss_pred             ---cCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-hcCCCc
Q 028647           80 ---GADCCVLVYDVNSMKS--FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-SKGNIP  153 (206)
Q Consensus        80 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~  153 (206)
                         ..+++++++|.....+  ...+..|+...          +.|+++++||+|+.................+ .....+
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  147 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPP  147 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence               4678999999986532  22233343332          5799999999998654323333333333333 344578


Q ss_pred             EEEeeccCCCCHHHHHHHHHHH
Q 028647          154 YFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      ++++|++++.++++++++|.+.
T Consensus       148 ~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         148 IILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             eEEEecCCCCCHHHHHHHHHHh
Confidence            9999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.2e-20  Score=154.20  Aligned_cols=146  Identities=19%  Similarity=0.254  Sum_probs=107.3

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc------hhhhh--ccCcEEEE
Q 028647           15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL   86 (206)
Q Consensus        15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~   86 (206)
                      |.+|+|||||+|+|++........++.+.+.....+.+++.  .+++|||||+..+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999988765555666666666666666664  5789999998766543      23333  36899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|+++.+..   ..+..++..       .+.|+++|+||+|+.+..  .. ..+.+++.+.++ .+++++||++|+|++
T Consensus        79 VvDat~ler~---l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~--~i-~~d~~~L~~~lg-~pvv~tSA~tg~Gi~  144 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE-------LGIPMILALNLVDEAEKK--GI-RIDEEKLEERLG-VPVVPTSATEGRGIE  144 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh-------cCCCEEEEEehhHHHHhC--CC-hhhHHHHHHHcC-CCEEEEECCCCCCHH
Confidence            9999875422   222222221       178999999999987542  22 234566777776 899999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          167 EAFQCIAKNA  176 (206)
Q Consensus       167 ~l~~~l~~~~  176 (206)
                      ++++.+.+.+
T Consensus       145 eL~~~i~~~~  154 (591)
T TIGR00437       145 RLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.86  E-value=2.3e-20  Score=136.18  Aligned_cols=173  Identities=20%  Similarity=0.210  Sum_probs=116.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh------------hhhcc
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ------------ERFQS   72 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~------------~~~~~   72 (206)
                      ..+..+|+|+|+||+|||||.|.+++.+.........+++....-+ +.....++.|+||||.            ..+..
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            4678999999999999999999999998876665555544433333 3334468999999991            11223


Q ss_pred             chhhhhccCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc-----------cc--
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKS--FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-----------VV--  137 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----------~~--  137 (206)
                      .....+.++|++++++|+++...  -..+...+..+    .     ++|-++|+||.|.......           +.  
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y----s-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~  218 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY----S-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK  218 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH----h-----cCCceeeccchhcchhhhHHhhhHHhccccccch
Confidence            44566788999999999995321  12222222222    2     7899999999998654210           01  


Q ss_pred             -cHHHHHHHHHhc------------CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccC
Q 028647          138 -SEKKARAWCASK------------GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL  187 (206)
Q Consensus       138 -~~~~~~~~~~~~------------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~  187 (206)
                       ..+..++|....            +.-.+|.+||.+|+|++++.++|...+....++.+.+.
T Consensus       219 ~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i  281 (379)
T KOG1423|consen  219 LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADI  281 (379)
T ss_pred             hhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccc
Confidence             111112221111            01248999999999999999999999988888777654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=3e-20  Score=155.61  Aligned_cols=155  Identities=20%  Similarity=0.199  Sum_probs=106.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hccchhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (206)
                      ...+|+++|.+|+|||||+|+|++.... ....++.+.+.......+.+  ..+.+|||||...        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            4578999999999999999999987543 23345555555444445555  4678999999652        23344556


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|+.+...... ..+...+..       .+.|+++|+||+|+....      ....++. ..+....+++
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~~------~~~~~~~-~lg~~~~~~i  416 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQASE------YDAAEFW-KLGLGEPYPI  416 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccch------hhHHHHH-HcCCCCeEEE
Confidence            789999999999986422111 123333321       178999999999986431      1122222 2232356899


Q ss_pred             eccCCCCHHHHHHHHHHHHHh
Q 028647          158 SAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ||.+|.|+++++++|++.+..
T Consensus       417 SA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        417 SAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             ECCCCCCchHHHHHHHHhccc
Confidence            999999999999999998865

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=5.4e-20  Score=134.72  Aligned_cols=155  Identities=20%  Similarity=0.197  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-------cchhhhhccCc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD   82 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   82 (206)
                      +|+++|++|+|||||+++|.+........+.++.+.....+.+.+  ..+++||+||..+..       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764433344445555555566665  578899999964322       22345788999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHH----------------------------------------HhhcC----------
Q 028647           83 CCVLVYDVNSMK-SFDNLNNWREEF----------------------------------------LIQAS----------  111 (206)
Q Consensus        83 ~~i~v~d~~~~~-s~~~~~~~~~~~----------------------------------------~~~~~----------  111 (206)
                      ++++|+|+++++ ..+.+...+...                                        +....          
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 222222222110                                        00000          


Q ss_pred             -----------CCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          112 -----------PSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       112 -----------~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                                 ......+|+++|+||+|+...       ++...++..   ..++++||+++.|++++++.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       001124699999999998642       333344432   4589999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=1.2e-20  Score=153.37  Aligned_cols=158  Identities=25%  Similarity=0.254  Sum_probs=102.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc----eeEEEEEE------------EeCCeEEEEEEEeCCChhhhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG----ADFLTKEV------------QFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      +.-|+++|++++|||||+++|.+..+......+.+    ........            .++.....+.||||||++.+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            34699999999999999999998766543222222    11111110            000011238899999999999


Q ss_pred             cchhhhhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc----------cc
Q 028647           72 SLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV----------VS  138 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------~~  138 (206)
                      ..+...++.+|++++|+|+++   +.+++.+.    .+. .      .++|+++++||+|+.+.....          ..
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~-~------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~  152 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR-M------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ  152 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH-H------cCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence            988888999999999999987   34433321    111 1      178999999999997421000          00


Q ss_pred             HHH------------HHHHHH-------------hcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          139 EKK------------ARAWCA-------------SKGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       139 ~~~------------~~~~~~-------------~~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      .+.            ..++..             ..+..+++++||++|+|+++|+.+|....
T Consensus       153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            000            011111             12247899999999999999999887544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=7.3e-20  Score=127.04  Aligned_cols=160  Identities=21%  Similarity=0.185  Sum_probs=116.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccchh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~   75 (206)
                      +...-|+++|.+|+|||||+|.|+++.-......++|.+.....+.+++.   +.++|.||          .+.+.....
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            45578999999999999999999997755555666666666666777774   67999999          445555566


Q ss_pred             hhhcc---CcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647           76 AFYRG---ADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG  150 (206)
Q Consensus        76 ~~~~~---~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      .++..   ..++++++|+..+..-.  .+.+|+.+.          ++|++||+||+|......+........+......
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~  168 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL----------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP  168 (200)
T ss_pred             HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc----------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence            66643   67889999998754321  233344333          8999999999999886555544455554333333


Q ss_pred             CCc--EEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          151 NIP--YFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       151 ~~~--~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ...  ++.+|+..+.|++++...|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            233  8899999999999999999887743

>PRK10218 GTP-binding protein; Provisional

Probab=99.86  E-value=5.1e-20  Score=150.17  Aligned_cols=164  Identities=20%  Similarity=0.244  Sum_probs=116.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc--CCCCCC------------CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN--KKFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (206)
                      ...+|+++|+.++|||||+++|+.  +.+...            .+...+.++......+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            457999999999999999999986  322221            123345555555555555668899999999999999


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---  149 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---  149 (206)
                      .+..+++.+|++++|+|+.+....+. ..++......       ++|.++++||+|+.+...... .+++..+...+   
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~-------gip~IVviNKiD~~~a~~~~v-l~ei~~l~~~l~~~  154 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY-------GLKPIVVINKVDRPGARPDWV-VDQVFDLFVNLDAT  154 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc-------CCCEEEEEECcCCCCCchhHH-HHHHHHHHhccCcc
Confidence            99999999999999999987533222 2222222211       789999999999976543322 33444433221   


Q ss_pred             ---CCCcEEEeeccCCC----------CHHHHHHHHHHHHHhc
Q 028647          150 ---GNIPYFETSAKEGI----------NVEEAFQCIAKNALKS  179 (206)
Q Consensus       150 ---~~~~~~~~S~~~~~----------~i~~l~~~l~~~~~~~  179 (206)
                         ..++++.+|+.+|.          ++..|++.|++.++..
T Consensus       155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence               13789999999998          5889999988888654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.85  E-value=2.6e-20  Score=152.01  Aligned_cols=162  Identities=19%  Similarity=0.222  Sum_probs=112.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC--CCCCCC------------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccch
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   74 (206)
                      .+|+++|+.++|||||+++|+..  .+....            +...+.++......+......+.+|||||+..|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            48999999999999999999863  221110            1112333333333333344788999999999999999


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC----
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG----  150 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----  150 (206)
                      ..+++.+|++++|+|+.+... .....++......       ++|+++|+||+|+.+..... ..+++.++...++    
T Consensus        82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~-------~ip~IVviNKiD~~~a~~~~-v~~ei~~l~~~~g~~~e  152 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL-------GLKPIVVINKIDRPSARPDE-VVDEVFDLFAELGADDE  152 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC-------CCCEEEEEECCCCCCcCHHH-HHHHHHHHHHhhccccc
Confidence            999999999999999986432 2333444433321       78999999999997653222 2344444443211    


Q ss_pred             --CCcEEEeeccCCC----------CHHHHHHHHHHHHHhc
Q 028647          151 --NIPYFETSAKEGI----------NVEEAFQCIAKNALKS  179 (206)
Q Consensus       151 --~~~~~~~S~~~~~----------~i~~l~~~l~~~~~~~  179 (206)
                        .++++++|+++|.          |++.+|+.|++.++..
T Consensus       153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence              2689999999995          7999999999988654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.85  E-value=4.1e-20  Score=145.17  Aligned_cols=166  Identities=17%  Similarity=0.161  Sum_probs=110.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (206)
                      +.++.++|+++|+.++|||||+++|++....              ...+...+.+.......+......+.++|+||+.+
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence            4567899999999999999999999852100              00111223333334444544445788999999998


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccc-cHHHHHHHHH
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVV-SEKKARAWCA  147 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~  147 (206)
                      |.......+..+|++++|+|+........ ...+..+...       ++| +|+++||+|+.+...... ..+++..++.
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~-------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~  159 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV-------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            88888778889999999999986432222 2222222111       678 678999999975322221 2345666655


Q ss_pred             hcC----CCcEEEeeccCCC--------CHHHHHHHHHHHHH
Q 028647          148 SKG----NIPYFETSAKEGI--------NVEEAFQCIAKNAL  177 (206)
Q Consensus       148 ~~~----~~~~~~~S~~~~~--------~i~~l~~~l~~~~~  177 (206)
                      ..+    .++++++|+.+|.        ++..+++.|.+.+.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            554    2689999999983        57788888877764

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=8.3e-23  Score=138.29  Aligned_cols=198  Identities=32%  Similarity=0.523  Sum_probs=162.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE-EEEEEEeCCChhhhccchhhhhccCc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      ++...++++|+|.-|+|||+++.+++-..+..++..+.+.++......+++.. +.+++||..|++++..+..-+++.++
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            34567899999999999999999999888888889998888877766666544 47899999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      +..+|||+++.-+|+....|.+.+...++.....-+|+++..||+|..... ..........+++..+....+++|++.+
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Ken  179 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKEN  179 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeeccccc
Confidence            999999999999999999999998877766655557789999999987642 2233467778888888889999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCC
Q 028647          163 INVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSS  202 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (206)
                      .++.+.-+.+++.++....+........+.......-..+
T Consensus       180 kni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~s  219 (229)
T KOG4423|consen  180 KNIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQPS  219 (229)
T ss_pred             cChhHHHHHHHHHHHhhccCCcccccccccccCccccCcc
Confidence            9999999999999988776666655555544444433333

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.85  E-value=3.3e-20  Score=123.38  Aligned_cols=136  Identities=26%  Similarity=0.405  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----hhhhccchhhhhccCcEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----QERFQSLGVAFYRGADCCV   85 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~~i   85 (206)
                      ||+++|+.|||||||+++|.+...  .+..|....+       .     -.++||||    ...+.........++|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998653  2333332211       1     23589999    3344555555667899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      ++.|++++.+.-. ..+...+          +.|+|-|+||+|+...   ....+..+++.+.-+.-.++.+|+.+|+|+
T Consensus        69 ll~dat~~~~~~p-P~fa~~f----------~~pvIGVITK~Dl~~~---~~~i~~a~~~L~~aG~~~if~vS~~~~eGi  134 (143)
T PF10662_consen   69 LLQDATEPRSVFP-PGFASMF----------NKPVIGVITKIDLPSD---DANIERAKKWLKNAGVKEIFEVSAVTGEGI  134 (143)
T ss_pred             EEecCCCCCccCC-chhhccc----------CCCEEEEEECccCccc---hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence            9999998654221 1122222          6799999999999842   345777778888878778999999999999


Q ss_pred             HHHHHHHH
Q 028647          166 EEAFQCIA  173 (206)
Q Consensus       166 ~~l~~~l~  173 (206)
                      ++|+++|.
T Consensus       135 ~eL~~~L~  142 (143)
T PF10662_consen  135 EELKDYLE  142 (143)
T ss_pred             HHHHHHHh
Confidence            99999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12735 elongation factor Tu; Reviewed

Probab=99.85  E-value=5.3e-20  Score=144.64  Aligned_cols=166  Identities=16%  Similarity=0.151  Sum_probs=109.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC-------CC---C----CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK-------KF---S----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~-------~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (206)
                      +.++.++|+++|++++|||||+++|++.       .+   .    ...+...+.+.......+.....++.|+||||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            4577899999999999999999999852       10   0    00111222333333334444445789999999998


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCc-ccccHHHHHHHHH
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGGNS-RVVSEKKARAWCA  147 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~-~~~~~~~~~~~~~  147 (206)
                      |.......+..+|++++|+|+.+..... ....+..+..    .   ++|.+ +++||+|+.+... .....+++..+..
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~----~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~  159 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----V---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH----c---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            8888888888999999999998743222 1222222211    1   67855 6799999975321 1222335666666


Q ss_pred             hcC----CCcEEEeeccCCC----------CHHHHHHHHHHHHH
Q 028647          148 SKG----NIPYFETSAKEGI----------NVEEAFQCIAKNAL  177 (206)
Q Consensus       148 ~~~----~~~~~~~S~~~~~----------~i~~l~~~l~~~~~  177 (206)
                      .++    .++++++|+.+|.          ++..|++.|.+.+.
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            654    2789999999984          57778888777654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=139.69  Aligned_cols=155  Identities=23%  Similarity=0.281  Sum_probs=117.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   76 (206)
                      ...++++++|.||+|||||+|.|.+.... ....+++|.++....+.+++  +.+.+.||+|..+....        ...
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            45689999999999999999999987765 57788888899888888888  67899999995444332        335


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .+.++|.+++|+|++.+.+-....     +....    ..+.|+++|.||.|+.....    ...   + ...+..+++.
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~~-----~~~~~----~~~~~~i~v~NK~DL~~~~~----~~~---~-~~~~~~~~i~  355 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDLA-----LIELL----PKKKPIIVVLNKADLVSKIE----LES---E-KLANGDAIIS  355 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhHH-----HHHhc----ccCCCEEEEEechhcccccc----cch---h-hccCCCceEE
Confidence            678899999999999863222211     11111    12789999999999987532    111   1 2223356999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhc
Q 028647          157 TSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +|+++++|++.|.+.|.+.+...
T Consensus       356 iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         356 ISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEecCccCHHHHHHHHHHHHhhc
Confidence            99999999999999999998776

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.84  E-value=5.3e-20  Score=132.93  Aligned_cols=150  Identities=21%  Similarity=0.168  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceeEEEEEEEeCCeEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVQFEDRLFT   58 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   58 (206)
                      +|+++|++|+|||||+++|+...-..                               ......+.+.....+...+  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            58999999999999999997532111                               1113333344333343443  56


Q ss_pred             EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc--c
Q 028647           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--V  136 (206)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~  136 (206)
                      +.+|||||+..+.......++.+|++++|+|++++..-... .... +.....     ..++|+|+||+|+.+....  .
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~-~~~~~~-----~~~iIvviNK~D~~~~~~~~~~  151 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSY-ILSLLG-----IRHVVVAVNKMDLVDYSEEVFE  151 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHH-HHHHcC-----CCcEEEEEEchhcccCCHHHHH
Confidence            78999999988877777778999999999999875321211 1111 111111     2357889999998753211  1


Q ss_pred             ccHHHHHHHHHhcC--CCcEEEeeccCCCCHHHH
Q 028647          137 VSEKKARAWCASKG--NIPYFETSAKEGINVEEA  168 (206)
Q Consensus       137 ~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~l  168 (206)
                      ...++++++...++  ..+++++||++|.|+.+.
T Consensus       152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            22344555555554  256999999999999854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5e-21  Score=128.31  Aligned_cols=168  Identities=23%  Similarity=0.303  Sum_probs=120.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC---CC--CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKK---FS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      +..+.|+++|..++|||||+..+-...   +.  ....-+++.......+.+.+  ..+.+||.+|++...++|..++..
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--ceeEEEEcCChHHHHHHHHHHHHH
Confidence            456889999999999999998765322   11  11222333444444555554  568999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc--CCCcEEEee
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETS  158 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S  158 (206)
                      +|++++++|+++++-++.....+..+...   ....++|+++.+||.|+.+.........-.. .....  +..++.++|
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~---E~leg~p~L~lankqd~q~~~~~~El~~~~~-~~e~~~~rd~~~~pvS  168 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVEN---EKLEGAPVLVLANKQDLQNAMEAAELDGVFG-LAELIPRRDNPFQPVS  168 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHH---HHhcCCchhhhcchhhhhhhhhHHHHHHHhh-hhhhcCCccCccccch
Confidence            99999999999988877766554444332   2233899999999999987532222111111 12222  246799999


Q ss_pred             ccCCCCHHHHHHHHHHHHHhc
Q 028647          159 AKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      |.+|+|+++-..|+...+.+.
T Consensus       169 al~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  169 ALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999998765

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=2.6e-19  Score=132.18  Aligned_cols=166  Identities=21%  Similarity=0.240  Sum_probs=124.8

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh-----hhhc---c
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-----ERFQ---S   72 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----~~~~---~   72 (206)
                      +|..+.....|+|.|.||+|||||+++++..+......|++|..+....+....  ..++++||||.     ++..   .
T Consensus       161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~  238 (346)
T COG1084         161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIER  238 (346)
T ss_pred             CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHH
Confidence            355666778999999999999999999999998888899998888887776666  56789999992     1111   1


Q ss_pred             chhhhhcc-CcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647           73 LGVAFYRG-ADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK  149 (206)
Q Consensus        73 ~~~~~~~~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (206)
                      ....++++ .++++|++|++.  .-+.+....++.++...+      +.|+++|+||+|+...    ...+++......-
T Consensus       239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~----e~~~~~~~~~~~~  308 (346)
T COG1084         239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE----EKLEEIEASVLEE  308 (346)
T ss_pred             HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch----hHHHHHHHHHHhh
Confidence            12223333 789999999985  446666677777776665      5699999999998753    2344445445555


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          150 GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +......+++..+.+.+.+...+...+.+
T Consensus       309 ~~~~~~~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         309 GGEEPLKISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ccccccceeeeehhhHHHHHHHHHHHhhc
Confidence            54667889999999999988888877654

>CHL00071 tufA elongation factor Tu

Probab=99.83  E-value=1.9e-19  Score=142.04  Aligned_cols=151  Identities=18%  Similarity=0.141  Sum_probs=100.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ..++.++|+++|++++|||||+++|++...                .....++.+.+.  ....+.....++.|+||||+
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh   85 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGH   85 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCCh
Confidence            456789999999999999999999986411                111223333333  33334334457889999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHH
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAW  145 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~  145 (206)
                      ..+.......+..+|++++|+|+.....-. ....+..+. .   .   ++| +|+++||+|+.+.... ....+++..+
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~-~---~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~  157 (409)
T CHL00071         86 ADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAK-Q---V---GVPNIVVFLNKEDQVDDEELLELVELEVREL  157 (409)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHH-H---c---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            988888888889999999999998643212 122222221 1   1   678 7789999999764221 1223456666


Q ss_pred             HHhcC----CCcEEEeeccCCCC
Q 028647          146 CASKG----NIPYFETSAKEGIN  164 (206)
Q Consensus       146 ~~~~~----~~~~~~~S~~~~~~  164 (206)
                      ....+    .++++++|+.+|.+
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        158 LSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHhCCCCCcceEEEcchhhccc
Confidence            66544    27899999999874

>COG2262 HflX GTPases [General function prediction only]

Probab=99.83  E-value=4.1e-19  Score=134.87  Aligned_cols=169  Identities=20%  Similarity=0.181  Sum_probs=123.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh---------hhhccchhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ---------ERFQSLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~~   76 (206)
                      .....|.++|..|+|||||+|.|++........-+.|.+...+.+.+.+. ..+.+.||-|.         +.|.+.. .
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTL-E  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTL-E  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHH-H
Confidence            45688999999999999999999988877777777788888888888763 45778999992         2333333 3


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      ....+|++++|+|+++|+..+.+......+.    ..+...+|+|+|+||+|+..+..      ... ...... ...+.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~----el~~~~~p~i~v~NKiD~~~~~~------~~~-~~~~~~-~~~v~  335 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLA----EIGADEIPIILVLNKIDLLEDEE------ILA-ELERGS-PNPVF  335 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHH----HcCCCCCCEEEEEecccccCchh------hhh-hhhhcC-CCeEE
Confidence            3468999999999999966555544433332    22233689999999999876421      111 222222 15899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhcCccccccCC
Q 028647          157 TSAKEGINVEEAFQCIAKNALKSGEEEEIYLP  188 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~  188 (206)
                      +||++|.|++.|++.|...+..........+|
T Consensus       336 iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp  367 (411)
T COG2262         336 ISAKTGEGLDLLRERIIELLSGLRTEVTLELP  367 (411)
T ss_pred             EEeccCcCHHHHHHHHHHHhhhcccceEEEcC
Confidence            99999999999999999999866555544443

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.83  E-value=8e-20  Score=132.97  Aligned_cols=149  Identities=17%  Similarity=0.184  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEEeCCeEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVQFEDRLFT   58 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   58 (206)
                      +|+++|+.++|||||+.+|+...-.                               .......+.+.....+...  ...
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence            5899999999999999998632100                               1112223333333334444  467


Q ss_pred             EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      +.+||+||+..+...+...+..+|++++|+|++++..      .......+. +.....     ..|+++++||+|+...
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~iiivvNK~Dl~~~  152 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLG-----VKQLIVAVNKMDDVTV  152 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcC-----CCeEEEEEEccccccc
Confidence            8999999998887777777888999999999987421      011111111 111111     3589999999999742


Q ss_pred             C----cccccHHHHHHHHHhcC----CCcEEEeeccCCCCHH
Q 028647          133 N----SRVVSEKKARAWCASKG----NIPYFETSAKEGINVE  166 (206)
Q Consensus       133 ~----~~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~  166 (206)
                      .    ......+++..+...++    .++++++||.+|+|++
T Consensus       153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1    01122334443444443    2679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.83  E-value=3e-19  Score=130.98  Aligned_cols=161  Identities=18%  Similarity=0.179  Sum_probs=122.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-------chhhhhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVAFYR   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~   79 (206)
                      ....|.++|.||+|||||++.+...+......+++|..+....+.+++.. ++++-|.||.-+-..       .....++
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHH
Confidence            34678999999999999999999988877788888888888777777764 489999999432221       2223456


Q ss_pred             cCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           80 GADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        80 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .++.++||+|++.+   ..|+.+..+..++..+-.  ...+.|.++|+||+|+++.     ....+.++...+....+++
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek--~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~~V~p  346 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK--GLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNPHVVP  346 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh--hhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCCcEEE
Confidence            79999999999987   777777666655543322  2227799999999998643     1223567777777567999


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~  175 (206)
                      +||+.++++.++++.|.+.
T Consensus       347 vsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  347 VSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             eeeccccchHHHHHHHhhc
Confidence            9999999999999987653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=1.9e-18  Score=117.52  Aligned_cols=159  Identities=21%  Similarity=0.317  Sum_probs=114.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCc-----cceeEEEEEEEeCCeEEEEEEEeCCChhhhccch
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-----YKAT-----IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   74 (206)
                      +....+|+|+|+.++||||+++.+........     ....     ++.-...-...+++ ...+++++||||.++.-+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHH
Confidence            34578999999999999999999988764211     1111     11112222222233 2468899999999999999


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-CCCc
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-GNIP  153 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  153 (206)
                      ....+++.++++++|.+.+..+ .....+. ++....     .+|++|++||.|+...    ...++++++...- -..+
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~-f~~~~~-----~ip~vVa~NK~DL~~a----~ppe~i~e~l~~~~~~~~  154 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIID-FLTSRN-----PIPVVVAINKQDLFDA----LPPEKIREALKLELLSVP  154 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHH-HHhhcc-----CCCEEEEeeccccCCC----CCHHHHHHHHHhccCCCc
Confidence            9999999999999999998887 2222222 222221     2899999999999876    3455555555443 2489


Q ss_pred             EEEeeccCCCCHHHHHHHHHHH
Q 028647          154 YFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      ++.+++.++++..+.++.+...
T Consensus       155 vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         155 VIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeeeecccchhHHHHHHHHHhh
Confidence            9999999999999999988876

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.82  E-value=3.4e-19  Score=129.57  Aligned_cols=157  Identities=18%  Similarity=0.185  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--------------ccceeEEEEEE----------------------EeC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA--------------TIGADFLTKEV----------------------QFE   53 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~--------------~~~~~~~~~~~----------------------~~~   53 (206)
                      +|+++|+.++|||||+++|..+.+......              +.+.......+                      .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999987554321110              00000000000                      011


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                      .....+.++|+||+..+.......+.  .+|++++|+|+..+..-. ...++..+...       ++|+++|+||+|+.+
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~-------~ip~ivvvNK~D~~~  152 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL-------NIPVFVVVTKIDLAP  152 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCEEEEEECccccC
Confidence            11246889999999888777666554  689999999998654322 22222222211       789999999999876


Q ss_pred             CCcccccHHHHHHHHHh-------------------------cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647          132 GNSRVVSEKKARAWCAS-------------------------KGNIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                      ........+++.++...                         ....+++.+|+.+|+|+++|+..|..
T Consensus       153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            43333444444444331                         11248999999999999999987754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.82  E-value=5.4e-19  Score=144.22  Aligned_cols=159  Identities=26%  Similarity=0.314  Sum_probs=100.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----ccceeEEEEEEE--eCCeE-----E-----EEEEEeCCChhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA----TIGADFLTKEVQ--FEDRL-----F-----TLQIWDTAGQERF   70 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~~~   70 (206)
                      ++..|+++|++++|||||+++|.+.........    +.+.........  ..+..     .     .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            445799999999999999999987654322222    122211111100  00111     1     2689999999999


Q ss_pred             ccchhhhhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc-----------
Q 028647           71 QSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-----------  136 (206)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----------  136 (206)
                      ...+...+..+|++++|+|+++   +.+++.+.    .+. .      .++|+++++||+|+.......           
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~-~------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~  153 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK-R------RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK  153 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH-H------cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence            8888888889999999999987   44444332    111 1      178999999999986321000           


Q ss_pred             ---ccHH-------HHHHHHHh--------------cCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          137 ---VSEK-------KARAWCAS--------------KGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       137 ---~~~~-------~~~~~~~~--------------~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                         ...+       +.......              .+.++++++||.+|+|++++++.+....
T Consensus       154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence               0000       01011111              1247899999999999999999886533

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.82  E-value=5.9e-19  Score=129.43  Aligned_cols=115  Identities=19%  Similarity=0.169  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-------------CC---CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSN-------------QY---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (206)
                      +|+++|+.|+|||||+++|+...-..             ..   +...+.++......+.....++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            58999999999999999997532110             00   011122222233333334478899999999999888


Q ss_pred             hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      +..+++.+|++++|+|+.+.... ....++..+...       ++|+++++||+|+.+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~-------~~P~iivvNK~D~~~a  131 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL-------NIPTIIFVNKIDRAGA  131 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc-------CCCEEEEEECccccCC
Confidence            88999999999999999876442 223333333211       7899999999999754

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.82  E-value=4.2e-19  Score=139.61  Aligned_cols=149  Identities=16%  Similarity=0.142  Sum_probs=99.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC----------------CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK----------------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (206)
                      .++.++|+++|+.++|||||+++|++..                .........+.+  .....+.....++.||||||+.
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence            4678999999999999999999997320                011122333333  3444454445678999999999


Q ss_pred             hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCccc-ccHHHHHHHH
Q 028647           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGGNSRV-VSEKKARAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~-~~~~~~~~~~  146 (206)
                      .|.......+..+|++++|+|+..+...... ..+..+...       ++|.+ +++||+|+.+..... ...++++.++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l  158 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence            8887777777889999999999874322221 222222111       66755 689999997642211 1234566666


Q ss_pred             HhcCC----CcEEEeeccCCC
Q 028647          147 ASKGN----IPYFETSAKEGI  163 (206)
Q Consensus       147 ~~~~~----~~~~~~S~~~~~  163 (206)
                      ..++.    ++++++|+.+|.
T Consensus       159 ~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       159 SEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HhcCCCccCccEEECcccccc
Confidence            66542    789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.82  E-value=6.5e-19  Score=138.41  Aligned_cols=163  Identities=17%  Similarity=0.153  Sum_probs=106.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ..++.++|+++|+.++|||||+++|++...                ........+  .......+.....++.++||||+
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~   85 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGIT--INTAHVEYETEKRHYAHVDCPGH   85 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeE--EeeeEEEEcCCCeEEEEEECCCH
Confidence            346789999999999999999999986210                011123333  33334444444467889999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCcc-cccHHHHHHH
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGGNSR-VVSEKKARAW  145 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-~~~~~~~~~~  145 (206)
                      ..+.......+..+|++++|+|+..+.... ....+..+...       ++|.+ +++||+|+.+.... ....+++..+
T Consensus        86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~-------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~  157 (396)
T PRK00049         86 ADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc-------CCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence            888888888889999999999998753322 12222222111       67875 68999999753211 1223345555


Q ss_pred             HHhcC----CCcEEEeeccCCC----------CHHHHHHHHHHHH
Q 028647          146 CASKG----NIPYFETSAKEGI----------NVEEAFQCIAKNA  176 (206)
Q Consensus       146 ~~~~~----~~~~~~~S~~~~~----------~i~~l~~~l~~~~  176 (206)
                      ....+    .++++++|+.++.          ++..+++.|.+.+
T Consensus       158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            55433    3789999999875          4566776666654

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.1e-19  Score=123.55  Aligned_cols=164  Identities=27%  Similarity=0.568  Sum_probs=139.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++++++|..|.||||++.+...+.+...+.++.+..........+-..+.+..|||.|++.+.....-++-+..++++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            48999999999999999999999999999999999998877777665566899999999999999998888889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      +||++...+..++..|...+.+.+.     ++|+++.+||.|.....    .......+....+ ..++++|++.+.|++
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r~----~k~k~v~~~rkkn-l~y~~iSaksn~Nfe  158 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKARK----VKAKPVSFHRKKN-LQYYEISAKSNYNFE  158 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceeccccc----cccccceeeeccc-ceeEEeecccccccc
Confidence            9999999999999999999998887     89999999999986532    1112222223333 789999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 028647          167 EAFQCIAKNALKSG  180 (206)
Q Consensus       167 ~l~~~l~~~~~~~~  180 (206)
                      .-|-|+.+.+.-..
T Consensus       159 kPFl~LarKl~G~p  172 (216)
T KOG0096|consen  159 RPFLWLARKLTGDP  172 (216)
T ss_pred             cchHHHhhhhcCCC
Confidence            99999999885433

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.6e-20  Score=120.42  Aligned_cols=164  Identities=20%  Similarity=0.289  Sum_probs=120.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+++|-.|+||||+..++.-.... ...|+.+....  .+.+  +.+.+++||..|+......|+.++.+.|++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve--~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE--TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc--cccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            6789999999999999998777655433 33555554433  3333  44889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|.+|.+........   +..++.+.+.++..+++++||.|......+.+....+.--..+...+.++.+||.+|+|++
T Consensus        92 VVDssd~dris~a~~e---l~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVE---LYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEeccchhhhhhhHHH---HHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            9999998765554443   3334455555577889999999987653332222222222222334889999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      ..++|+.+.+-.
T Consensus       169 ~~~DWL~~~l~~  180 (182)
T KOG0072|consen  169 PAMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.82  E-value=1.4e-19  Score=117.44  Aligned_cols=167  Identities=23%  Similarity=0.329  Sum_probs=121.3

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      ++....++|+++|-.++|||||+..|.+.... +..++.|  +..+.+..++ .+.+.+||.+|+...+..|..++.+.|
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd   87 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD   87 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence            34567899999999999999999999876633 3344444  4455555555 378999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++|+|+|.+|..-|+.+..-+-++..   ......+|+.+..||.|+.-+...+.....+.-.......+.+-++|+..+
T Consensus        88 ~lIyVIDS~D~krfeE~~~el~ELle---eeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~  164 (185)
T KOG0074|consen   88 GLIYVIDSTDEKRFEEISEELVELLE---EEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL  164 (185)
T ss_pred             eEEEEEeCCchHhHHHHHHHHHHHhh---hhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc
Confidence            99999999988777766554444433   333337899999999998765322222211111112223467899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028647          163 INVEEAFQCIAKNA  176 (206)
Q Consensus       163 ~~i~~l~~~l~~~~  176 (206)
                      +|+.+-.+|+....
T Consensus       165 eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  165 EGSTDGSDWVQSNP  178 (185)
T ss_pred             cCccCcchhhhcCC
Confidence            99998888876543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.81  E-value=1.2e-18  Score=138.99  Aligned_cols=151  Identities=18%  Similarity=0.128  Sum_probs=100.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ..++.++|+++|++++|||||+++|+....                ..+....  .+.......+......+.++|+||+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rG--iTi~~~~~~~~~~~~~i~liDtPGh  154 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARG--ITINTATVEYETENRHYAHVDCPGH  154 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCC--eeEEEEEEEEecCCcEEEEEECCCH
Confidence            457789999999999999999999985211                1122222  3333333333333357889999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHH
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAW  145 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~  145 (206)
                      ..|.......+..+|++++|+|+.+...... .+.+..+...       ++| +++++||+|+.+.... ....+++..+
T Consensus       155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~  226 (478)
T PLN03126        155 ADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLELVELEVREL  226 (478)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence            9998888888899999999999987543222 2222222111       678 7789999999763221 2223355566


Q ss_pred             HHhcC----CCcEEEeeccCCCC
Q 028647          146 CASKG----NIPYFETSAKEGIN  164 (206)
Q Consensus       146 ~~~~~----~~~~~~~S~~~~~~  164 (206)
                      ....+    .++++++|+.++.+
T Consensus       227 l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        227 LSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHhcCCCcCcceEEEEEcccccc
Confidence            55542    47899999988753

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.81  E-value=8.5e-19  Score=140.78  Aligned_cols=156  Identities=21%  Similarity=0.251  Sum_probs=115.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhh--cc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--RG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~   80 (206)
                      .+|+++|.||+|||||+|+|++.+-...-.|+.|.+.........++  +++++|.||.....      ...++++  ..
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            56999999999999999999998866666777777666666666664  47899999943332      2233444  34


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      .|+++-|+|+++.+---   .+.-+++..       ++|+++++|++|..+......+.+   ++.+.++ +|++++||+
T Consensus        82 ~D~ivnVvDAtnLeRnL---yltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~---~L~~~LG-vPVv~tvA~  147 (653)
T COG0370          82 PDLIVNVVDATNLERNL---YLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIE---KLSKLLG-VPVVPTVAK  147 (653)
T ss_pred             CCEEEEEcccchHHHHH---HHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHH---HHHHHhC-CCEEEEEee
Confidence            79999999999865322   222223222       889999999999887544444444   4445566 999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcC
Q 028647          161 EGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +|.|++++++.+.+....+.
T Consensus       148 ~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         148 RGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             cCCCHHHHHHHHHHhccccc
Confidence            99999999999988765544

>PLN03127 Elongation factor Tu; Provisional

Probab=99.81  E-value=1.3e-18  Score=137.96  Aligned_cols=164  Identities=18%  Similarity=0.153  Sum_probs=104.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC------C----------CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK------K----------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ..++.++|+++|+.++|||||+++|.+.      .          ...+..++.+.+.  ....+.....++.|+||||+
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh  134 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGH  134 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCc
Confidence            3467899999999999999999999621      1          0112223344443  33444444467899999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccc-cHHHHHHH
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVV-SEKKARAW  145 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~-~~~~~~~~  145 (206)
                      ..|.......+..+|++++|+|+.....-+. ...+..+..    .   ++| +|+++||+|+.+...... ..+++.++
T Consensus       135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~  206 (447)
T PLN03127        135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----V---GVPSLVVFLNKVDVVDDEELLELVEMELREL  206 (447)
T ss_pred             cchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----c---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence            8888777777788999999999986533221 121221111    1   778 578999999975321111 12234444


Q ss_pred             HHhcC----CCcEEEeecc---CCCC-------HHHHHHHHHHHHH
Q 028647          146 CASKG----NIPYFETSAK---EGIN-------VEEAFQCIAKNAL  177 (206)
Q Consensus       146 ~~~~~----~~~~~~~S~~---~~~~-------i~~l~~~l~~~~~  177 (206)
                      ...++    .++++++|+.   +|.|       +..|++.|.+.+.
T Consensus       207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            44322    3678888875   4555       6777777777654

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=7.4e-19  Score=127.50  Aligned_cols=149  Identities=23%  Similarity=0.222  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------CCccceeEEEEEEE--e---CCeEEEEEEEeCCCh
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQY-----------------KATIGADFLTKEVQ--F---EDRLFTLQIWDTAGQ   67 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~i~D~~g~   67 (206)
                      +|+++|+.|+|||||+++|+........                 +...+.++......  +   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999864432210                 01111222111111  1   355688999999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccc
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVV  137 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~  137 (206)
                      ..+.......+..+|++++|+|+.+..+... ..++.....       .+.|+++|+||+|+.....          ...
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~  153 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRLILELKLPPNDAYFKLRH  153 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccCcccccCCHHHHHHHHHH
Confidence            9888888888999999999999987665432 233332211       1679999999999862110          011


Q ss_pred             cHHHHHHHHHhcCC------Cc----EEEeeccCCCCHH
Q 028647          138 SEKKARAWCASKGN------IP----YFETSAKEGINVE  166 (206)
Q Consensus       138 ~~~~~~~~~~~~~~------~~----~~~~S~~~~~~i~  166 (206)
                      ..+++..++..++.      .|    +++.|++.+.++.
T Consensus       154 ~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             HHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            12233333333321      22    7788999888765

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.81  E-value=1.1e-18  Score=138.48  Aligned_cols=156  Identities=19%  Similarity=0.273  Sum_probs=104.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------C--CCCCccceeEEEEEEEeCC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS---------------------------N--QYKATIGADFLTKEVQFED   54 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~   54 (206)
                      ..++.++|+++|+.++|||||+.+|+...-.                           +  ..+...+.+.......+..
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            4577899999999999999999998642110                           0  0011122333333344555


Q ss_pred             eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHH-------HHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 028647           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD-------NLNNWREEFLIQASPSDPDNFP-FVVLGNK  126 (206)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK  126 (206)
                      ....+.++|+||+..|.......+..+|++|+|+|+++. .++       ...+.+... .. .     ++| +|+++||
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~-~-----gi~~iIV~vNK  154 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT-L-----GVKQMICCCNK  154 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH-c-----CCCcEEEEEEc
Confidence            557889999999999999999999999999999999863 121       122211111 11 1     665 7889999


Q ss_pred             CCCCCCC----cccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647          127 IDVDGGN----SRVVSEKKARAWCASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       127 ~Dl~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      +|+....    ......++++.++...+    .++++++|+.+|+|+.+
T Consensus       155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            9986311    11233556667776655    37899999999999853

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.80  E-value=1.5e-18  Score=137.78  Aligned_cols=155  Identities=18%  Similarity=0.227  Sum_probs=101.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCccceeEEEEEEEe
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF--S-----------------------------NQYKATIGADFLTKEVQF   52 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~   52 (206)
                      ..++.++|+++|+.++|||||+.+|+...-  .                             .+...  +.+.......+
T Consensus         3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~   80 (446)
T PTZ00141          3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKF   80 (446)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEE
Confidence            356789999999999999999999875210  0                             11122  22333333344


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---F---DNLNNWREEFLIQASPSDPDNFP-FVVLGN  125 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~n  125 (206)
                      ......+.|+|+||+..|.......+..+|++++|+|+..+..   +   ....+.+.... .+      ++| +|+++|
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~------gi~~iiv~vN  153 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TL------GVKQMIVCIN  153 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-Hc------CCCeEEEEEE
Confidence            4455788999999999999998988999999999999986421   0   11111111111 11      666 679999


Q ss_pred             CCCCCC--C--CcccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647          126 KIDVDG--G--NSRVVSEKKARAWCASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       126 K~Dl~~--~--~~~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      |+|...  .  .......+++..+....+    .++++++|+.+|+|+.+
T Consensus       154 KmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        154 KMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            999542  1  112233445555555443    37899999999999864

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.80  E-value=6.4e-18  Score=121.07  Aligned_cols=162  Identities=17%  Similarity=0.215  Sum_probs=95.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce---eEEEEEEEeCCeEEEEEEEeCCChhhhccchhh-----hhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA---DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----FYR   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~   79 (206)
                      +++|+++|.+|+|||||+|.|++...........+.   +.....+...+ ...+.+||+||..........     .+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            478999999999999999999986543222222111   11111111111 235889999996433222222     256


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc---------ccccHHHHHHHHH---
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS---------RVVSEKKARAWCA---  147 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~---  147 (206)
                      .+|+++++.+.. ...  .-..++..+...       +.|+++|+||+|+.....         +....+++++.+.   
T Consensus        80 ~~d~~l~v~~~~-~~~--~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  149 (197)
T cd04104          80 EYDFFIIISSTR-FSS--NDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL  149 (197)
T ss_pred             CcCEEEEEeCCC-CCH--HHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHH
Confidence            789988885432 211  122333433322       579999999999853211         1122223333222   


Q ss_pred             -h--cCCCcEEEeecc--CCCCHHHHHHHHHHHHHhcC
Q 028647          148 -S--KGNIPYFETSAK--EGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       148 -~--~~~~~~~~~S~~--~~~~i~~l~~~l~~~~~~~~  180 (206)
                       .  ....+++.+|+.  .+.++..+.+.++..+..+.
T Consensus       150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence             1  223578999998  57899999999999987643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.79  E-value=6.8e-18  Score=124.42  Aligned_cols=171  Identities=22%  Similarity=0.207  Sum_probs=123.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchhhhhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYR   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~   79 (206)
                      --.+++++|+|++|||||+++|++........+++|....+..+.+++  .++++.|+||.-+       -.......++
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            347899999999999999999999988888888888888888888888  6788999998321       1244667889


Q ss_pred             cCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCC-------------------------------------------
Q 028647           80 GADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDP-------------------------------------------  115 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~-------------------------------------------  115 (206)
                      +||++++|+|+..... .+.+.+.+...--.+....+                                           
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999986544 44444433331111111100                                           


Q ss_pred             ------------------CCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH-
Q 028647          116 ------------------DNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA-  176 (206)
Q Consensus       116 ------------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~-  176 (206)
                                        ..+|.++|.||.|+..       .+....+.+..   ..+.+||..+.|+++|.+.|.+.+ 
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-------~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-------LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-------HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence                              0349999999999875       33444444443   589999999999999999999965 


Q ss_pred             ----HhcCccccccCCc
Q 028647          177 ----LKSGEEEEIYLPD  189 (206)
Q Consensus       177 ----~~~~~~~~~~~~~  189 (206)
                          +..++..+.+.++
T Consensus       290 liRVYtK~~g~~pd~~~  306 (365)
T COG1163         290 LIRVYTKPPGEEPDFDE  306 (365)
T ss_pred             eEEEEecCCCCCCCCCC
Confidence                4445555555533

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=2.3e-18  Score=134.40  Aligned_cols=175  Identities=18%  Similarity=0.209  Sum_probs=130.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---------------SNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~   68 (206)
                      .++..|+.|+-+-.-|||||..+|+...-               ..+.+.+.|.......+.+ ++..+.+.++|||||-
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence            36678999999999999999999874221               1223344444444444433 3566889999999999


Q ss_pred             hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh
Q 028647           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS  148 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (206)
                      .|.......+.-|+++++|+|++..-..++...++..+..        +..+|.|+||+|++.++... ...++.++...
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~adpe~-V~~q~~~lF~~  207 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSADPER-VENQLFELFDI  207 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCCHHH-HHHHHHHHhcC
Confidence            9999998889999999999999987666666665555532        77899999999999875333 34445555544


Q ss_pred             cCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCCc
Q 028647          149 KGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPD  189 (206)
Q Consensus       149 ~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~  189 (206)
                      .+ .+++.+||++|.|++++++.|++.++..+-..+.++..
T Consensus       208 ~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~  247 (650)
T KOG0462|consen  208 PP-AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRM  247 (650)
T ss_pred             Cc-cceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHH
Confidence            44 78999999999999999999999997655555554433

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.78  E-value=8.1e-18  Score=121.88  Aligned_cols=113  Identities=20%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEeC--------CeEEEEEEEeCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVQFE--------DRLFTLQIWDTA   65 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   65 (206)
                      +|+++|+.++|||||+.+|+...-..                ......+.........+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            79999999999999999997532110                011111211112222233        346789999999


Q ss_pred             ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      |+..+.......++.+|++++|+|+..+.+.+.. ..+.....   .    ++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~----~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---E----RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---c----CCCEEEEEECCCcc
Confidence            9999999999999999999999999986554432 22222211   1    67999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.78  E-value=5e-18  Score=135.86  Aligned_cols=156  Identities=19%  Similarity=0.151  Sum_probs=98.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCccceeEEEEEEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---------------------------------YKATIGADFLTKEVQ   51 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~   51 (206)
                      .+..++|+++|++++|||||+++|+...-...                                 .....+.+.....  
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~--  101 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY--  101 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence            46779999999999999999999975421110                                 0111222332223  


Q ss_pred             eCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                      +.....++.|+||||+..+.......+..+|++++|+|+..+..-.....+  .+...+.     ..|+++++||+|+.+
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg-----~~~iIvvvNKiD~~~  174 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLG-----IKHLVVAVNKMDLVD  174 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhC-----CCceEEEEEeecccc
Confidence            333345788999999988877777778899999999999864321111111  1111111     237899999999975


Q ss_pred             CCcc--cccHHHHHHHHHhcC---CCcEEEeeccCCCCHHHHH
Q 028647          132 GNSR--VVSEKKARAWCASKG---NIPYFETSAKEGINVEEAF  169 (206)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~---~~~~~~~S~~~~~~i~~l~  169 (206)
                      ....  ....+++..+....+   ..+++++|+++|+|+.++.
T Consensus       175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            3211  112223333333332   4789999999999998653

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.77  E-value=8.1e-18  Score=133.37  Aligned_cols=167  Identities=14%  Similarity=0.153  Sum_probs=109.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEE---------------EeC------------
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEV---------------QFE------------   53 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~------------   53 (206)
                      .++..++|+++|+...|||||+..|++...   ..+.....+.+.-....               ...            
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            457789999999999999999999986432   12222222211100000               000            


Q ss_pred             ----CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCC
Q 028647           54 ----DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKI  127 (206)
Q Consensus        54 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~  127 (206)
                          .....+.|+|+||++.|...+...+..+|++++|+|+..+. ..+. .+.+. +...+      ++ ++++|+||+
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~l------gi~~iIVvlNKi  181 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIM------KLKHIIILQNKI  181 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHc------CCCcEEEEEecc
Confidence                00136789999999999988888889999999999998642 2122 12221 11111      33 589999999


Q ss_pred             CCCCCCcccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          128 DVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      |+.+........+++.++....  ...+++++||.+|.|++.|++.|.+.+..
T Consensus       182 Dlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        182 DLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             cccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            9975432223344444444331  34789999999999999999999976643

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.77  E-value=1.9e-17  Score=123.53  Aligned_cols=140  Identities=16%  Similarity=0.121  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      +|+++|++|+|||||+++|+...-.                  .......+.+.....+.+.+  .++.++||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            5899999999999999999742110                  11122333333333444444  678999999998888


Q ss_pred             cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN  151 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+...++.+|++++|+|+.+...-.. ...+..+..    .   ++|+++++||+|+.+.. .....+++++.......
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~---~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~~  149 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----Y---NVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANPV  149 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----c---CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCce
Confidence            888899999999999999987533222 122222211    1   78999999999987643 22334444444443332


Q ss_pred             CcEEEeecc
Q 028647          152 IPYFETSAK  160 (206)
Q Consensus       152 ~~~~~~S~~  160 (206)
                      ..++++|+.
T Consensus       150 ~~~~Pisa~  158 (270)
T cd01886         150 PLQLPIGEE  158 (270)
T ss_pred             EEEeccccC
Confidence            345666654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.76  E-value=1.3e-17  Score=131.46  Aligned_cols=150  Identities=19%  Similarity=0.159  Sum_probs=95.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CCCCCccceeEEEEEEEeCCe
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS---------------------------------NQYKATIGADFLTKEVQFEDR   55 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~   55 (206)
                      ++|+++|+.++|||||+.+|+...-.                                 .+.....+.+.....+..  .
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence            48999999999999999998643211                                 011112223333333333  3


Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR  135 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (206)
                      ..++.|+||||+..|.......+..+|++++|+|+..+..-+....+ . +...+.     ..++++++||+|+.+....
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~-~~~~~~-----~~~iivviNK~D~~~~~~~  151 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-Y-IASLLG-----IRHVVLAVNKMDLVDYDEE  151 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-H-HHHHcC-----CCcEEEEEEecccccchHH
Confidence            35788999999999887777888999999999999865332221111 1 111111     2358899999999754211


Q ss_pred             --cccHHHHHHHHHhcC--CCcEEEeeccCCCCHHH
Q 028647          136 --VVSEKKARAWCASKG--NIPYFETSAKEGINVEE  167 (206)
Q Consensus       136 --~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~  167 (206)
                        ....++...+....+  .++++++||.+|+|+++
T Consensus       152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              112233333444433  35799999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.76  E-value=3.6e-17  Score=121.51  Aligned_cols=168  Identities=16%  Similarity=0.099  Sum_probs=113.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhcc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   80 (206)
                      ...|.++|.||+|||||++.+...+......+++|..+..-.+.+.. .-.+.+-|.||..+-       .......+..
T Consensus       159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            45688999999999999999999887777777777777666666533 235788999993221       1122334567


Q ss_pred             CcEEEEEEECCChhh---HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           81 ADCCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +.++++|+|++..+-   .+.......++..+...  ..+.|.+||+||+|+..+  .+...+....+.+.......+++
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~--L~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~~~~~~I  313 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPK--LAEKPRIVVLNKIDLPLD--EEELEELKKALAEALGWEVFYLI  313 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHH--hccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCCCcceee
Confidence            999999999985432   33333333333332211  127899999999997664  33333334444444442333339


Q ss_pred             eccCCCCHHHHHHHHHHHHHhcC
Q 028647          158 SAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      |+.+++|++++...+.+.+.+..
T Consensus       314 Sa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         314 SALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             ehhcccCHHHHHHHHHHHHHHhh
Confidence            99999999999999998887765

>cd04169 RF3 RF3 subfamily

Probab=99.76  E-value=7.3e-17  Score=120.31  Aligned_cols=117  Identities=21%  Similarity=0.257  Sum_probs=79.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CC-----------ccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY---------KA-----------TIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~---------~~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (206)
                      .+|+++|++|+|||||+++|+...-....         ..           ..+.++......+......+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            68999999999999999999742111000         00           01223333333444555789999999999


Q ss_pred             hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                      .|.......++.+|++++|+|+++..... ...++...    ..   .++|+++++||+|+.+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~----~~---~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVC----RL---RGIPIITFINKLDREGRD  139 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHH----Hh---cCCCEEEEEECCccCCCC
Confidence            88887788889999999999998753322 22222222    11   178999999999987653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.75  E-value=5.8e-18  Score=117.60  Aligned_cols=130  Identities=21%  Similarity=0.274  Sum_probs=81.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhhccchhhh---hccCcEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADCC   84 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~~   84 (206)
                      -.|+++|+.|||||+|+.+|..+.......+. ....   ...+ ....-.+.++|+|||.+.+......   ...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            57899999999999999999998655443333 1111   1112 1222357899999999888765554   7889999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH
Q 028647           85 VLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR  143 (206)
Q Consensus        85 i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  143 (206)
                      |||+|.+. +.......+++..++...... ...+|++|++||.|+..+.......+.++
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence            99999974 455666677777776665533 23789999999999987644333333333

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.75  E-value=1.1e-16  Score=121.51  Aligned_cols=163  Identities=17%  Similarity=0.140  Sum_probs=100.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe---------------------CC-eEEEEEEEeCCCh-
Q 028647           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------------------ED-RLFTLQIWDTAGQ-   67 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~g~-   67 (206)
                      |+++|.||+|||||+++|++........+.++.++......+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999987754333444443333322221                     22 3467999999996 


Q ss_pred             ---hhhccc---hhhhhccCcEEEEEEECCC---------------h-hhHHHHHHHHHH--------------------
Q 028647           68 ---ERFQSL---GVAFYRGADCCVLVYDVNS---------------M-KSFDNLNNWREE--------------------  105 (206)
Q Consensus        68 ---~~~~~~---~~~~~~~~d~~i~v~d~~~---------------~-~s~~~~~~~~~~--------------------  105 (206)
                         ++...+   ....++++|++++|+|+..               | +.++.+..-+..                    
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333333   3335899999999999973               1 011111110000                    


Q ss_pred             ---------------------HHhhcCC----C-----------------CCCCCcEEEEEeCCCCCCCCcccccHHHHH
Q 028647          106 ---------------------FLIQASP----S-----------------DPDNFPFVVLGNKIDVDGGNSRVVSEKKAR  143 (206)
Q Consensus       106 ---------------------~~~~~~~----~-----------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  143 (206)
                                           +...+..    .                 ....+|+++|+||.|+....   ...+   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~~~~---  234 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---NNIS---  234 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---HHHH---
Confidence                                 0000000    0                 01256999999999975431   1111   


Q ss_pred             HHHHhcCCCcEEEeeccCCCCHHHHHH-HHHHHHHhc
Q 028647          144 AWCASKGNIPYFETSAKEGINVEEAFQ-CIAKNALKS  179 (206)
Q Consensus       144 ~~~~~~~~~~~~~~S~~~~~~i~~l~~-~l~~~~~~~  179 (206)
                      .+....+...++.+||+.+.+++++.+ .+.++++..
T Consensus       235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            222344457899999999999999998 588888543

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=6.9e-17  Score=126.56  Aligned_cols=165  Identities=21%  Similarity=0.218  Sum_probs=117.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-eEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +++-|+++|+-.-|||||+..+..........-..|-.+.-..+..+. ..-.+.|+|||||+.|..+...-..-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            456789999999999999999998887766555566555555555542 2236889999999999988877778899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH--HHHhcC-CCcEEEeeccCC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA--WCASKG-NIPYFETSAKEG  162 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~S~~~~  162 (206)
                      +|+++++.-.-++.... ....    ..   ++|++|+.||+|+++.+......+..+.  ....++ ...++++||++|
T Consensus        84 LVVa~dDGv~pQTiEAI-~hak----~a---~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg  155 (509)
T COG0532          84 LVVAADDGVMPQTIEAI-NHAK----AA---GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG  155 (509)
T ss_pred             EEEEccCCcchhHHHHH-HHHH----HC---CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence            99999985443333221 1111    11   8999999999999876432222221111  112222 367999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 028647          163 INVEEAFQCIAKNALKS  179 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~  179 (206)
                      +|+++|++.++-..-..
T Consensus       156 ~Gi~eLL~~ill~aev~  172 (509)
T COG0532         156 EGIDELLELILLLAEVL  172 (509)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999988766444

>cd01850 CDC_Septin CDC/Septin

Probab=99.75  E-value=1.1e-16  Score=119.94  Aligned_cols=145  Identities=14%  Similarity=0.186  Sum_probs=95.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc----
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----   72 (206)
                      -.++|+|+|.+|+|||||+|+|++..+...          ..++.+.......+..++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999998776533          233444445555666677778999999999322111    


Q ss_pred             -----------------c----hh-hhhc--cCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           73 -----------------L----GV-AFYR--GADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        73 -----------------~----~~-~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                                       .    .+ ..+.  .+|+++++++.+...- ... ...+..+    ..    ++|+++|+||+
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l-~~~D~~~lk~l----~~----~v~vi~VinK~  153 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGL-KPLDIEFMKRL----SK----RVNIIPVIAKA  153 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCC-CHHHHHHHHHH----hc----cCCEEEEEECC
Confidence                             0    00 1122  4788999998874211 111 2222222    21    67999999999


Q ss_pred             CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647          128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE  161 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (206)
                      |+..........+.+.+.+..++ ++++......
T Consensus       154 D~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~~~~  186 (276)
T cd01850         154 DTLTPEELKEFKQRIMEDIEEHN-IKIYKFPEDE  186 (276)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHcC-CceECCCCCc
Confidence            99764445556667777777776 8888776644

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.75  E-value=3.6e-17  Score=135.70  Aligned_cols=155  Identities=20%  Similarity=0.175  Sum_probs=97.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCccceeEEEEEE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---------------------------------YKATIGADFLTKEV   50 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~   50 (206)
                      ..+..++|+++|++++|||||+++|+...-...                                 ...+.+.+.....+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            345679999999999999999999986332111                                 01111222222222


Q ss_pred             EeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           51 QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        51 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      ..  ...++.|+||||+..+.......+..+|++++|+|+..+..-+.... +. +.....     ..+++|++||+|+.
T Consensus       100 ~~--~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~-~~~~~~-----~~~iivvvNK~D~~  170 (632)
T PRK05506        100 AT--PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SF-IASLLG-----IRHVVLAVNKMDLV  170 (632)
T ss_pred             cc--CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HH-HHHHhC-----CCeEEEEEEecccc
Confidence            23  33567899999998887777777889999999999976532111111 11 111111     24788999999997


Q ss_pred             CCCcc--cccHHHHHHHHHhcC--CCcEEEeeccCCCCHHH
Q 028647          131 GGNSR--VVSEKKARAWCASKG--NIPYFETSAKEGINVEE  167 (206)
Q Consensus       131 ~~~~~--~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~  167 (206)
                      +....  ....+++.++...++  ..+++++||.+|.|+.+
T Consensus       171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            53211  112233444444443  35799999999999874

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.74  E-value=6.9e-17  Score=124.48  Aligned_cols=177  Identities=16%  Similarity=0.191  Sum_probs=129.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCCccceeEEEEEEEe---CCeEEEEEEEeCC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF---------------SNQYKATIGADFLTKEVQF---EDRLFTLQIWDTA   65 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~   65 (206)
                      +.++..|..++.+-.-|||||..||+...-               ....+.+.|.......+.+   ++..+.++++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            445667889999999999999999875221               1233444555444444444   4577999999999


Q ss_pred             ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH
Q 028647           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW  145 (206)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  145 (206)
                      ||=.|.-.....+.-|.++++|+|++..-..+++...+..+..        +.-++-|+||+||+.++. +...+++++.
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Adp-ervk~eIe~~  155 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAADP-ERVKQEIEDI  155 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCCH-HHHHHHHHHH
Confidence            9988888777778889999999999987666667666655532        667899999999998742 2233344433


Q ss_pred             HHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCCcc
Q 028647          146 CASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT  190 (206)
Q Consensus       146 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~  190 (206)
                      .- .+....+.+||++|.|++++++.|++.++...-..+.++.+.
T Consensus       156 iG-id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkAL  199 (603)
T COG0481         156 IG-IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKAL  199 (603)
T ss_pred             hC-CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEE
Confidence            32 233568999999999999999999999987665555555443

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.73  E-value=1.6e-16  Score=128.42  Aligned_cols=119  Identities=20%  Similarity=0.245  Sum_probs=80.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------CCCCccceeEEEEEEEeCCeEEEEEEEeCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (206)
                      .+..+|+|+|++++|||||+++|+...  ...                  ..+...+.++......+......+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            456799999999999999999996311  100                  000111223333333344444778999999


Q ss_pred             ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |+..+.......++.+|++|+|+|+++..... ...++...    ..   .++|+++++||+|+...
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~----~~---~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVC----RL---RDTPIFTFINKLDRDGR  146 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHH----Hh---cCCCEEEEEECCccccc
Confidence            99988888888889999999999998753221 22222222    11   17899999999998653

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=4.1e-17  Score=118.04  Aligned_cols=165  Identities=15%  Similarity=0.240  Sum_probs=112.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE-eCCeEEEEEEEeCCChh-------hhccchhh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ-FEDRLFTLQIWDTAGQE-------RFQSLGVA   76 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~-------~~~~~~~~   76 (206)
                      ...+++|+++|.+|+|||||+|.|+.+...+...-..+.++...... +++  -.+.+||+||-.       ++......
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            45789999999999999999999997665544433333333222222 233  357899999933       36677888


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-c------------ccccHH---
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-S------------RVVSEK---  140 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~------------~~~~~~---  140 (206)
                      .+...|.+++++++.++.--. -.+++..+.....     +.++++++|.+|..... .            ++...+   
T Consensus       114 ~l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~  187 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGT-DEDFLRDVIILGL-----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE  187 (296)
T ss_pred             HhhhccEEEEeccCCCccccC-CHHHHHHHHHhcc-----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence            889999999999999875322 2334444444333     57999999999986542 0            111222   


Q ss_pred             HHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       141 ~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      .+.++++..  .|++..+.+.+.|++.+...++..++..
T Consensus       188 ~~~~~~q~V--~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         188 ALGRLFQEV--KPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHHHHHhhc--CCeEEeccccCccHHHHHHHHHHhCccc
Confidence            222233332  5788888999999999999999988643

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.72  E-value=4.7e-17  Score=117.90  Aligned_cols=173  Identities=21%  Similarity=0.298  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----chhhhhccCcE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGADC   83 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~   83 (206)
                      ||+++|+.+|||||+.+.+..+..+ +...-..|.+.....+...+. +.+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999988877765433 222222334444444433332 5799999999865544     35677899999


Q ss_pred             EEEEEECCChhhHHHH---HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH----HHHhcC--CCcE
Q 028647           84 CVLVYDVNSMKSFDNL---NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA----WCASKG--NIPY  154 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~--~~~~  154 (206)
                      +|+|+|+...+-.+.+   ...+..+.....     ++.+.|++.|+|+...+.+....++..+    .+...+  .+.+
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-----~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~  154 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-----NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITF  154 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHST-----T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-----CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEE
Confidence            9999999854433333   333333433322     8899999999999876544444333333    222222  2667


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhcCccccccCCc
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPD  189 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~  189 (206)
                      +.||-.+ +.+-+.+..+++.+....+.-+..+..
T Consensus       155 ~~TSI~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~  188 (232)
T PF04670_consen  155 FLTSIWD-ESLYEAWSKIVQKLIPNLSTLENLLNN  188 (232)
T ss_dssp             EEE-TTS-THHHHHHHHHHHTTSTTHCCCCCCCCH
T ss_pred             EeccCcC-cHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            8888877 689999999999888766666555443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK13351 elongation factor G; Reviewed

Probab=99.72  E-value=1.4e-16  Score=133.48  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=82.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------------CC-----CCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-------------NQ-----YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      +...+|+|+|+.|+|||||+++|+...-.             ..     .....+.......+.+.  ...+.+|||||+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~   83 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGH   83 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCc
Confidence            45689999999999999999999853210             00     01111222222233333  468899999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ..+...+..+++.+|++++|+|+++.........| ..+..       .++|+++++||+|+...
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-------YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-------cCCCEEEEEECCCCCCC
Confidence            99988899999999999999999987665544333 22211       17899999999998764

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=1.5e-16  Score=121.02  Aligned_cols=157  Identities=19%  Similarity=0.294  Sum_probs=103.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCCCCccceeEEEEEEEe
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-------------------------------FSNQYKATIGADFLTKEVQF   52 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   52 (206)
                      ..++.++++++|+..+|||||+.+|+...                               .....+.  |.+.......+
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERer--GvTi~~~~~~f   80 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERER--GVTIDVAHSKF   80 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhc--ceEEEEEEEEe
Confidence            45678999999999999999999986421                               1111222  33344444445


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---HHHH-HHHHHHHHhhcCCCCCCCC-cEEEEEeCC
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FDNL-NNWREEFLIQASPSDPDNF-PFVVLGNKI  127 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~~~~~-p~ivv~nK~  127 (206)
                      ....+.++|+|+||+..|-..+..-+.++|++|+|+|+.+++.   +... +..-+.++....     ++ ..||++||+
T Consensus        81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKM  155 (428)
T COG5256          81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKM  155 (428)
T ss_pred             ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcc
Confidence            5555689999999999999999999999999999999987631   1111 111112222211     33 489999999


Q ss_pred             CCCCCCcc--cccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647          128 DVDGGNSR--VVSEKKARAWCASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       128 Dl~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      |..+.+..  +....++..+.+..+    .++|+++|+..|+|+.+
T Consensus       156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            99875311  122223333444443    36799999999999875

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.71  E-value=3.7e-17  Score=128.59  Aligned_cols=167  Identities=22%  Similarity=0.283  Sum_probs=122.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+++|..|+||||||-.|+...|.+...+-...-..+  .++....+...++|++..+.........++.+|++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            456999999999999999999999988875544332221112  333444466889999977666666678889999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH-HHHHHHHhcCC-CcEEEeeccCC
Q 028647           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK-KARAWCASKGN-IPYFETSAKEG  162 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~S~~~~  162 (206)
                      ++++.+++++.+.+. .|+..+......  .-++|+|+|+||.|.......  +.+ ...-+..++.. -.+++|||++-
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~d~~~~~~~--s~e~~~~pim~~f~EiEtciecSA~~~  160 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGD--YHETPVILVGNKSDNGDNENN--SDEVNTLPIMIAFAEIETCIECSALTL  160 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCC--CccCCEEEEeeccCCcccccc--chhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence            999999999999975 577777655422  127899999999998765332  222 23334444432 25799999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 028647          163 INVEEAFQCIAKNALK  178 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~  178 (206)
                      .++.++|....++++.
T Consensus       161 ~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  161 ANVSELFYYAQKAVIH  176 (625)
T ss_pred             hhhHhhhhhhhheeec
Confidence            9999999999888754

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=4.7e-16  Score=116.61  Aligned_cols=153  Identities=20%  Similarity=0.270  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC------C------------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQ------Y------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      +|+++|++|+|||||+++|+.......      .            ....+.......+.+.+  ..+.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            589999999999999999875321100      0            00111122222333443  678899999998888


Q ss_pred             cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN  151 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+..++..+|++++|+|+++.........| ..+..       .++|.++++||+|+....    ..+...++.+.++ 
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~-------~~~p~iivvNK~D~~~~~----~~~~~~~l~~~~~-  145 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE-------AGIPRIIFINKMDRERAD----FDKTLAALQEAFG-  145 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH-------cCCCEEEEEECCccCCCC----HHHHHHHHHHHhC-
Confidence            8888899999999999999976544332222 22211       178999999999987642    2233333444444 


Q ss_pred             CcEEE--eeccCCCCHHHHHHHHHHHHH
Q 028647          152 IPYFE--TSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       152 ~~~~~--~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      .+++.  +...++.++..+.+.+....+
T Consensus       146 ~~~~~~~ip~~~~~~~~~~vd~~~~~~~  173 (268)
T cd04170         146 RPVVPLQLPIGEGDDFKGVVDLLTEKAY  173 (268)
T ss_pred             CCeEEEEecccCCCceeEEEEcccCEEE
Confidence            33433  345566665555555544443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=8.8e-16  Score=120.24  Aligned_cols=162  Identities=23%  Similarity=0.229  Sum_probs=112.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +++.-|.++|+..-|||||+..|.+.........+.|..+--..+.+..+ -.++|.|||||..|..+...-..-+|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            45678899999999999999999987766544444443333333444433 56899999999999998888888899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH--HHHhc-CCCcEEEeeccCC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA--WCASK-GNIPYFETSAKEG  162 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~S~~~~  162 (206)
                      +|+.++|.-.-++..    .|. +....   ++|++|.+||+|.+++.......+....  ....+ +.++++++||.+|
T Consensus       230 LVVAadDGVmpQT~E----aIk-hAk~A---~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g  301 (683)
T KOG1145|consen  230 LVVAADDGVMPQTLE----AIK-HAKSA---NVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG  301 (683)
T ss_pred             EEEEccCCccHhHHH----HHH-HHHhc---CCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence            999999854333321    111 11111   8899999999999876422111111110  11223 3578999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028647          163 INVEEAFQCIAKNA  176 (206)
Q Consensus       163 ~~i~~l~~~l~~~~  176 (206)
                      .|++.|.+.++-.+
T Consensus       302 ~nl~~L~eaill~A  315 (683)
T KOG1145|consen  302 ENLDLLEEAILLLA  315 (683)
T ss_pred             CChHHHHHHHHHHH
Confidence            99999999887654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.70  E-value=8.4e-16  Score=100.93  Aligned_cols=106  Identities=21%  Similarity=0.284  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh---------hccchhhhhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFYR   79 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~   79 (206)
                      +|+|+|.+|+|||||+|.|++.... ....+..+.......+.+.+..  +.++||||...         ........+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999986432 2333444444444555666654  46999999321         1112334447


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  126 (206)
                      .+|++++|+|+.++.. +....++..+.   .     +.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~-----~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK---N-----KKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH---T-----TSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh---c-----CCCEEEEEcC
Confidence            8999999999877422 22333333331   1     7899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=2.2e-16  Score=122.26  Aligned_cols=171  Identities=17%  Similarity=0.110  Sum_probs=112.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-hc--------cchh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQ--------SLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~--------~~~~   75 (206)
                      +..++|+++|+||+|||||+|.|...... ....+++|.+.....+.+++  +.+.+.||+|.-+ ..        ...+
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence            56799999999999999999999988765 56778888888788888777  6788999999543 11        1233


Q ss_pred             hhhccCcEEEEEEEC--CChhhHHHHHHHHHHHHhhcCCC--CCCCCcEEEEEeCCCCCCC---CcccccHHHHHHHHHh
Q 028647           76 AFYRGADCCVLVYDV--NSMKSFDNLNNWREEFLIQASPS--DPDNFPFVVLGNKIDVDGG---NSRVVSEKKARAWCAS  148 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~  148 (206)
                      ..+..+|++++|+|+  .+-++...+...+...-..+...  ...+.|++++.||.|+...   ..+........+....
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~  423 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV  423 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence            556789999999999  33333333333333322211110  0014689999999999765   1111000000011111


Q ss_pred             cCCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          149 KGNIPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       149 ~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +  -...++|+++++|++.|.+.+.+.+...-
T Consensus       424 ~--~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  424 F--PIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             c--ceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence            1  23456999999999999999998876543

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.70  E-value=1.2e-16  Score=123.75  Aligned_cols=178  Identities=16%  Similarity=0.115  Sum_probs=131.4

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccch--
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLG--   74 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~--   74 (206)
                      ||+.+.+...++|+|.|++|||||++.++.......+.++++...++..+.+.  ....+++||||.-.    -.+..  
T Consensus       161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEm  238 (620)
T KOG1490|consen  161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEM  238 (620)
T ss_pred             CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHH
Confidence            46667888999999999999999999999988887888888777666555443  36678999999311    11111  


Q ss_pred             h--hhh-ccCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647           75 V--AFY-RGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK  149 (206)
Q Consensus        75 ~--~~~-~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (206)
                      .  .++ .--.+|+++.|++.  +-|.+...++++.+...+.     +.|+|+|+||+|+...+......+++.+.....
T Consensus       239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~  313 (620)
T KOG1490|consen  239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD  313 (620)
T ss_pred             HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCccccCHHHHHHHHHHHhc
Confidence            1  112 22457888999885  4567777778888887776     889999999999987755544454555555555


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccc
Q 028647          150 GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~  185 (206)
                      +.++++.+|+.+.+|+.++.....+.++..+-+.+.
T Consensus       314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Kl  349 (620)
T KOG1490|consen  314 GNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKL  349 (620)
T ss_pred             cCceEEEecccchhceeeHHHHHHHHHHHHHHHHHh
Confidence            668999999999999999888888777766554444

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.69  E-value=1.5e-16  Score=101.34  Aligned_cols=138  Identities=27%  Similarity=0.346  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh----hhhccchhhhhccCcEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----ERFQSLGVAFYRGADCCV   85 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i   85 (206)
                      +|+++|+.|+|||||+++|.+....  +..+..       +.+..+    -.+||||.    ..+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            6899999999999999999976532  222221       223222    25799994    334444455557899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|-+++++++.-..     .+....      ..|+|-|++|+|++++    ...+..++|...-+.-++|.+|+.++.|+
T Consensus        70 ~v~~and~~s~f~p-----~f~~~~------~k~vIgvVTK~DLaed----~dI~~~~~~L~eaGa~~IF~~s~~d~~gv  134 (148)
T COG4917          70 YVHAANDPESRFPP-----GFLDIG------VKKVIGVVTKADLAED----ADISLVKRWLREAGAEPIFETSAVDNQGV  134 (148)
T ss_pred             eeecccCccccCCc-----cccccc------ccceEEEEecccccch----HhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence            99999988652211     111111      4579999999999864    45677888888888889999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          166 EEAFQCIAKN  175 (206)
Q Consensus       166 ~~l~~~l~~~  175 (206)
                      +++++.|...
T Consensus       135 ~~l~~~L~~~  144 (148)
T COG4917         135 EELVDYLASL  144 (148)
T ss_pred             HHHHHHHHhh
Confidence            9999998753

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.69  E-value=2.1e-15  Score=108.09  Aligned_cols=163  Identities=13%  Similarity=0.099  Sum_probs=98.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-------cc----hh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SL----GV   75 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~----~~   75 (206)
                      ++|+++|.+|+|||||+|.+++.......  .+..+.........+.+  ..+.++||||.....       ..    ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987644222  22333333344444455  468999999943221       11    11


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc----cHHHHHHHHHhcCC
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV----SEKKARAWCASKGN  151 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~  151 (206)
                      ....+.|++++|+++.+ .+-+ -...+..+...+...-  -.++++|+|+.|.........    ....++.+....+ 
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~-  153 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKV--LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG-  153 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHh--HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-
Confidence            22357899999999986 2211 1222333333322110  247899999999765432111    2245555656655 


Q ss_pred             CcEEEeec-----cCCCCHHHHHHHHHHHHHh
Q 028647          152 IPYFETSA-----KEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       152 ~~~~~~S~-----~~~~~i~~l~~~l~~~~~~  178 (206)
                      ..++..+.     ..+.++++|++.+.+.+.+
T Consensus       154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            44555543     4567899999999888865

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=3.5e-16  Score=108.87  Aligned_cols=163  Identities=17%  Similarity=0.263  Sum_probs=110.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc---cCc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GAD   82 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d   82 (206)
                      .+.-.|+++|+.+||||+|+-.|..+.+.....+   .......+.+.+.  .++++|.||+++.+....++++   .+-
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~ak  110 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAK  110 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccce
Confidence            3446799999999999999999988754322221   1222223333332  3789999999999988888887   689


Q ss_pred             EEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh-------------
Q 028647           83 CCVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS-------------  148 (206)
Q Consensus        83 ~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------------  148 (206)
                      +++||+|... ......+..++..++..... ...++|+++++||.|+.-+...+...+.++.....             
T Consensus       111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~  189 (238)
T KOG0090|consen  111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD  189 (238)
T ss_pred             eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            9999999863 33445566666666655432 12278999999999997765444333333222110             


Q ss_pred             --------------------c--CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          149 --------------------K--GNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       149 --------------------~--~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                                          .  ..+.|.++|++++ +++++-+|+.++
T Consensus       190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                                0  1245888999988 899999998765

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.68  E-value=1.2e-15  Score=127.69  Aligned_cols=118  Identities=18%  Similarity=0.101  Sum_probs=82.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      .++..+|+|+|++++|||||+++|+...-..                  ......+.+.....+.+.+  .++.+|||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence            3456799999999999999999997421110                  0122333334444444544  6789999999


Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      +..+.......++.+|++++|+|+.+....+.. ..+..+..    .   ++|+++++||+|+...
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~---~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR----Y---EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH----c---CCCEEEEEECCCCCCC
Confidence            988888888899999999999999875443322 22222211    1   7899999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09866 hypothetical protein; Provisional

Probab=99.68  E-value=4.9e-15  Score=119.25  Aligned_cols=110  Identities=25%  Similarity=0.293  Sum_probs=71.8

Q ss_pred             EEEEEeCCChhh-----hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           58 TLQIWDTAGQER-----FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        58 ~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ++.|+||||...     ........+..+|++++|+|+....+... ...+..+.. ...    ..|+++|+||+|+...
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk-~~K----~~PVILVVNKIDl~dr  304 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA-VGQ----SVPLYVLVNKFDQQDR  304 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh-cCC----CCCEEEEEEcccCCCc
Confidence            478999999543     23344567899999999999987433222 122222221 110    2599999999998643


Q ss_pred             CcccccHHHHHHHHHh------cCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          133 NSRVVSEKKARAWCAS------KGNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      .  ....+.+..+...      .+...++++||+.|.|++++++.|.++
T Consensus       305 e--eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        305 N--SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             c--cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            2  1123444444321      234579999999999999999999874

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.68  E-value=3.8e-15  Score=116.51  Aligned_cols=83  Identities=19%  Similarity=0.221  Sum_probs=57.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe---------------------C-CeEEEEEEEeCCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG   66 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g   66 (206)
                      ++|+++|.||+|||||+|+|++........+..+.++......+                     + .....++++|+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987765434454444443332221                     1 1236789999999


Q ss_pred             h----hhhccc---hhhhhccCcEEEEEEECC
Q 028647           67 Q----ERFQSL---GVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        67 ~----~~~~~~---~~~~~~~~d~~i~v~d~~   91 (206)
                      .    +....+   ....++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            3    222222   333478999999999996

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=4.4e-16  Score=103.96  Aligned_cols=158  Identities=21%  Similarity=0.336  Sum_probs=113.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.-+++++|-.|+|||||++.|-+++... +.||.-  +...++.+.+  ..++-+|.+|+......|..++..+|+++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            456789999999999999999998877542 233221  1222334444  67889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH---HhcC------------
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC---ASKG------------  150 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~------------  150 (206)
                      +.+|+.+.+-+.....-+..++..-.   ....|+++.+||+|.+.+.    ++++.+...   +...            
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v~~~~~~~  165 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKVNLTDSNV  165 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccccccCCCC
Confidence            99999999888877665555543322   1278999999999998763    233322211   1110            


Q ss_pred             -CCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          151 -NIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       151 -~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                       -..++.||...+.+.-+.|.|+.+.
T Consensus       166 rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  166 RPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CeEEEEEEEEEccCccceeeeehhhh
Confidence             1346778888888887777777654

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=9.2e-16  Score=113.09  Aligned_cols=190  Identities=16%  Similarity=0.174  Sum_probs=130.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEE--------------------EEe----CCeEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKE--------------------VQF----EDRLFT   58 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------------~~~----~~~~~~   58 (206)
                      ++.++|.++|+..-|||||...|.+--..   .......+...-...                    ...    ..-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            67899999999999999999998752211   111111111100000                    000    012235


Q ss_pred             EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc
Q 028647           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS  138 (206)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  138 (206)
                      +.|.|.|||+.....+.+-..-.|++++|++++.+.-..+..+-+..+.-+ .     -..++++-||+|+...+...+.
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-g-----ik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-G-----IKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-c-----cceEEEEecccceecHHHHHHH
Confidence            889999999999888888888899999999998643222222222222111 1     2368999999999987666777


Q ss_pred             HHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCC
Q 028647          139 EKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG  203 (206)
Q Consensus       139 ~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  203 (206)
                      .+++++|.+--  .+.+++++||..+.|++-|++.|.+.+..  +..+...++.+-+-.|+...++|
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt--P~rd~~~~p~m~v~RSFDVNkPG  226 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT--PERDLDKPPRMYVARSFDVNKPG  226 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC--CccCCCCCceEEEEeecccCCCC
Confidence            78888887643  35899999999999999999999999865  55555667777777777666665

>TIGR00503 prfC peptide chain release factor 3

Probab=99.65  E-value=5.1e-15  Score=119.76  Aligned_cols=119  Identities=20%  Similarity=0.244  Sum_probs=80.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------CCCCccceeEEEEEEEeCCeEEEEEEEeCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (206)
                      .+..+|+|+|++++|||||+++|+..  ....                  ..+...+.++......++....++.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            45679999999999999999998531  1100                  001112333434444455555789999999


Q ss_pred             ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |+..+.......++.+|++|+|+|+.+... .....++... ..      .++|+++++||+|+...
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~------~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL------RDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh------cCCCEEEEEECccccCC
Confidence            998888877788899999999999987422 1122222222 11      17899999999998754

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK12739 elongation factor G; Reviewed

Probab=99.65  E-value=4.9e-15  Score=124.11  Aligned_cols=117  Identities=19%  Similarity=0.132  Sum_probs=83.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ....+|+|+|++++|||||+++|+...-.                  .......+.+.....+.+++  .++.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence            45689999999999999999999742110                  01233344444444555554  67899999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ..+...+...++.+|++++|+|+......... ..+..+..    .   ++|+++++||+|+.+.
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~---~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----Y---GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----c---CCCEEEEEECCCCCCC
Confidence            88888888899999999999999875432222 22222211    1   7899999999999865

>PRK00007 elongation factor G; Reviewed

Probab=99.65  E-value=2.8e-15  Score=125.49  Aligned_cols=119  Identities=18%  Similarity=0.145  Sum_probs=82.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC--CC----------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      .+...+|+|+|++++|||||+++|+...  ..                .......+.+.....+.+.+  .++.++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            4557899999999999999999997311  10                01233344444444454544  6789999999


Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                      +..+.......+..+|++++|+|+......+...- +..+...       ++|.++++||+|+.+..
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~~~~~-------~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQADKY-------KVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHHHHHc-------CCCEEEEEECCCCCCCC
Confidence            98887778888899999999999986543333222 2222111       78999999999998653

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.64  E-value=1.2e-14  Score=107.41  Aligned_cols=170  Identities=21%  Similarity=0.296  Sum_probs=122.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEE--EeCCeEEEEEEEeCCChhhhccchhhhhcc---C
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV--QFEDRLFTLQIWDTAGQERFQSLGVAFYRG---A   81 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---~   81 (206)
                      ..-+|+|+|..++|||||+.+|.+..   ...+..+..|....+  ...+...++.+|-..|......+....+..   +
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            34589999999999999999999865   445555554543333  333445578888888876666666655543   2


Q ss_pred             -cEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCC-------------------------------------------
Q 028647           82 -DCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPD-------------------------------------------  116 (206)
Q Consensus        82 -d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  116 (206)
                       -++|++.|+++| .-++.++.|...+..+......+                                           
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             477889999998 44667778877655544433331                                           


Q ss_pred             --------------CCcEEEEEeCCCCCCC---------CcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647          117 --------------NFPFVVLGNKIDVDGG---------NSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA  173 (206)
Q Consensus       117 --------------~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~  173 (206)
                                    ++|++||++|+|....         +...+....++.||.+++ ...+++|+++..|++-|..+|.
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYiv  286 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIV  286 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHH
Confidence                          6799999999998321         123345667778888898 8899999999999999999999


Q ss_pred             HHHHhcC
Q 028647          174 KNALKSG  180 (206)
Q Consensus       174 ~~~~~~~  180 (206)
                      +..+--.
T Consensus       287 hr~yG~~  293 (473)
T KOG3905|consen  287 HRSYGFP  293 (473)
T ss_pred             HHhcCcc
Confidence            9886443

>PRK12740 elongation factor G; Reviewed

Probab=99.62  E-value=9.6e-15  Score=122.33  Aligned_cols=109  Identities=20%  Similarity=0.240  Sum_probs=75.7

Q ss_pred             EcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchh
Q 028647           14 LGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV   75 (206)
Q Consensus        14 iG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   75 (206)
                      +|++++|||||+++|+...-.                  .....+.+.......+.+.+  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999643211                  01122333333334444444  6789999999988888888


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ..+..+|++++|+|++..........| ..+..       .++|+++|+||+|+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK-------YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH-------cCCCEEEEEECCCCCCC
Confidence            889999999999999886554433222 22211       17899999999998754

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=3e-14  Score=106.25  Aligned_cols=187  Identities=22%  Similarity=0.220  Sum_probs=117.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC----C---CCCCCccceeEEEEEEEe-------CCeEEEEEEEeCCChhhhcc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKF----S---NQYKATIGADFLTKEVQF-------EDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~----~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~~   72 (206)
                      ..+++.++|+..||||||.++|..-..    .   ...+...+.+.--..+.+       .+..+++.++|+||+...-+
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            349999999999999999999874221    1   122222333332222222       45567899999999987766


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH-HHHHHh---
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA-RAWCAS---  148 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~---  148 (206)
                      .......-.|..++|+|+.....-+...-+   ++....     ....+||+||+|...+..+.-..++. .+..+.   
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcL---iig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~  157 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECL---IIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES  157 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhh---hhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence            666666668999999999864332222211   111111     34578889999876654443333222 222221   


Q ss_pred             --c-CCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCC
Q 028647          149 --K-GNIPYFETSAKEG----INVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG  203 (206)
Q Consensus       149 --~-~~~~~~~~S~~~~----~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  203 (206)
                        + ++.|++++|+..|    +++.+|.+.|..++.......+.  |=.+.+.+-...|.+|
T Consensus       158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~g--pflm~vDHCF~IKGQG  217 (522)
T KOG0461|consen  158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEG--PFLMAVDHCFAIKGQG  217 (522)
T ss_pred             cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCC--CeEEEeeeeEEeccCc
Confidence              2 3489999999999    88999999999988764444333  3344455555555555

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.60  E-value=1e-14  Score=122.56  Aligned_cols=121  Identities=20%  Similarity=0.192  Sum_probs=81.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC---------------CCCCC---CCCccceeEEEEEEEeCCeEEEEEEEeCC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK---------------KFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (206)
                      ..+...+|+++|+.++|||||+++|+..               .+...   ...+.........+.+++..+++.+||||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP   94 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP   94 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence            3456789999999999999999999752               11110   11122222222233456667889999999


Q ss_pred             ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |+..+.......++.+|++++|+|+......+....| ....   ..    +.|.++++||+|....
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~----~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KE----NVKPVLFINKVDRLIN  153 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---Hc----CCCEEEEEEChhcccc
Confidence            9998888888899999999999999874322222111 1111   11    6788999999998754

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.59  E-value=7.9e-14  Score=108.13  Aligned_cols=88  Identities=24%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE---------------EEEEEEeCCChh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQE   68 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~   68 (206)
                      +....++|+++|.||+|||||+|.|++........+.+|.++....+.+.+..               .++.++|+||..
T Consensus        17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            34667899999999999999999999877665556777766666666554322               358999999932


Q ss_pred             h-------hccchhhhhccCcEEEEEEECC
Q 028647           69 R-------FQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        69 ~-------~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                      .       ........++++|++++|+|+.
T Consensus        97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1       2223344568899999999973

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.57  E-value=8.9e-14  Score=107.34  Aligned_cols=171  Identities=18%  Similarity=0.201  Sum_probs=115.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC--C------------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS--N------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (206)
                      ...+|+++-+..-|||||+..|+...-.  .            ..+...|.++-.+...+....+.+.|+|||||..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            3468999999999999999999864321  1            1112223344333333444447899999999999999


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC--
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG--  150 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--  150 (206)
                      .....+.-.|++++++|+.....-++ .-.+..-+.   .    +.+-|||+||+|.+.+....+..+ ..++...++  
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl~---~----gL~PIVVvNKiDrp~Arp~~Vvd~-vfDLf~~L~A~  154 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALA---L----GLKPIVVINKIDRPDARPDEVVDE-VFDLFVELGAT  154 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCch-hhhHHHHHH---c----CCCcEEEEeCCCCCCCCHHHHHHH-HHHHHHHhCCC
Confidence            99999999999999999987433221 111111111   1    667899999999998865444333 334333332  


Q ss_pred             ----CCcEEEeeccCCC----------CHHHHHHHHHHHHHhcCcccccc
Q 028647          151 ----NIPYFETSAKEGI----------NVEEAFQCIAKNALKSGEEEEIY  186 (206)
Q Consensus       151 ----~~~~~~~S~~~~~----------~i~~l~~~l~~~~~~~~~~~~~~  186 (206)
                          ..|+++.|+..|.          ++.-||+.|+++++...-..+.+
T Consensus       155 deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~P  204 (603)
T COG1217         155 DEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEP  204 (603)
T ss_pred             hhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCC
Confidence                2789999988764          68889999999986655333333

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.56  E-value=1.4e-13  Score=104.83  Aligned_cols=111  Identities=16%  Similarity=0.170  Sum_probs=72.1

Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR  135 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (206)
                      .+.+.|+||+|.....   ......+|.++++.+...++......   ..++         .+..++|+||+|+......
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~---------E~aDIiVVNKaDl~~~~~a  212 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIM---------ELADLIVINKADGDNKTAA  212 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhh---------hhhheEEeehhcccchhHH
Confidence            3568899999954221   22466799999998755554433322   1122         2344899999999865333


Q ss_pred             cccHHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          136 VVSEKKARAWCASKG------NIPYFETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       136 ~~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      .....++........      ..+++.+|+.++.|++++++.|.++.....+
T Consensus       213 ~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~  264 (332)
T PRK09435        213 RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA  264 (332)
T ss_pred             HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            333344444433211      1589999999999999999999998764433

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.56  E-value=4.4e-14  Score=119.05  Aligned_cols=121  Identities=17%  Similarity=0.142  Sum_probs=80.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CC--------------CCCccceeEEEE--EEEeCCeEEEEEEEeCC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--NQ--------------YKATIGADFLTK--EVQFEDRLFTLQIWDTA   65 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~--~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~   65 (206)
                      ..++..+|+++|+.++|||||+.+|+...-.  ..              .....+......  .+.+.+....+.|+|||
T Consensus        16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP   95 (731)
T PRK07560         16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP   95 (731)
T ss_pred             chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence            3456789999999999999999999753211  00              011111111111  22234456789999999


Q ss_pred             ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |+..+.......++.+|++++|+|+......+...-|. .....       +.|.++++||+|+...
T Consensus        96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~-------~~~~iv~iNK~D~~~~  154 (731)
T PRK07560         96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE-------RVKPVLFINKVDRLIK  154 (731)
T ss_pred             CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc-------CCCeEEEEECchhhcc
Confidence            99988888888899999999999998753322222222 21111       5688999999998743

>PRK13768 GTPase; Provisional

Probab=99.56  E-value=6.7e-14  Score=103.79  Aligned_cols=115  Identities=17%  Similarity=0.087  Sum_probs=70.9

Q ss_pred             EEEEEeCCChhhh---ccchhhhhcc-----CcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           58 TLQIWDTAGQERF---QSLGVAFYRG-----ADCCVLVYDVNSMKSFDNL--NNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        58 ~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                      .+.++|+||+.+.   ...+..+++.     .+++++++|+.........  ..++........     ++|+++|+||+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~-----~~~~i~v~nK~  172 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL-----GLPQIPVLNKA  172 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc-----CCCEEEEEEhH
Confidence            4789999997653   3333333322     8999999999754322222  122221111111     78999999999


Q ss_pred             CCCCCCcccccHHHHH------------------------HHHHhc-CCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          128 DVDGGNSRVVSEKKAR------------------------AWCASK-GNIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      |+..............                        +..... ...+++++|+.++.|+++++++|.+.+.
T Consensus       173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            9986543322211111                        111222 2358999999999999999999988773

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=5.2e-14  Score=108.13  Aligned_cols=182  Identities=20%  Similarity=0.120  Sum_probs=125.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      -|+-.|+-.-|||||+..+.+....   .....+++.+.........+.  .+.|+|.||++++-..+...+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4788899999999999999875443   445566666666555555554  78999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      |+++++.-..+.....  .++..+      +++ .++|+||+|+.+....+...+++..... +...+++.+|+..|+||
T Consensus        80 vV~~deGl~~qtgEhL--~iLdll------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI  150 (447)
T COG3276          80 VVAADEGLMAQTGEHL--LILDLL------GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGI  150 (447)
T ss_pred             EEeCccCcchhhHHHH--HHHHhc------CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCH
Confidence            9999764433333221  222232      444 6999999999875322222233333333 55688999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCCc
Q 028647          166 EEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGC  204 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc  204 (206)
                      ++|.+.|.+..-  ....+...+-.+-+.+.+.-|..||
T Consensus       151 ~~Lk~~l~~L~~--~~e~d~~~~fri~IDraFtVKGvGT  187 (447)
T COG3276         151 EELKNELIDLLE--EIERDEQKPFRIAIDRAFTVKGVGT  187 (447)
T ss_pred             HHHHHHHHHhhh--hhhhccCCceEEEEeeEEEeccccE
Confidence            999999999874  2222233333444555555566654

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.55  E-value=3.3e-13  Score=107.12  Aligned_cols=172  Identities=22%  Similarity=0.287  Sum_probs=116.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC--CeEEEEEEEeCCChhhhccchhhhhcc----
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRG----   80 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~----   80 (206)
                      ..-+|+|+|..++|||||+.+|.+..   ...++.+..|....+.-+  +....+.+|-..|...+..+....+..    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            44689999999999999999987643   345566666654443322  233468899888866666666555543    


Q ss_pred             CcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCC---------------------------------------------
Q 028647           81 ADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSD---------------------------------------------  114 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~---------------------------------------------  114 (206)
                      --++|+|+|.+.|.. ++.+..|+..+..+.....                                             
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence            247888999999754 3344444433221111100                                             


Q ss_pred             -------------CCCCcEEEEEeCCCCCCCC---------cccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHH
Q 028647          115 -------------PDNFPFVVLGNKIDVDGGN---------SRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI  172 (206)
Q Consensus       115 -------------~~~~p~ivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l  172 (206)
                                   ..++|++||++|+|....-         ......+-++.+|..++ +.++++|.+...+++-|+.+|
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHH
Confidence                         0157999999999975321         12244555777788887 889999999999999999999


Q ss_pred             HHHHHhcCcc
Q 028647          173 AKNALKSGEE  182 (206)
Q Consensus       173 ~~~~~~~~~~  182 (206)
                      .+.++...-.
T Consensus       260 ~h~l~~~~f~  269 (472)
T PF05783_consen  260 LHRLYGFPFK  269 (472)
T ss_pred             HHHhccCCCC
Confidence            9998776554

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.54  E-value=2.5e-13  Score=116.33  Aligned_cols=147  Identities=25%  Similarity=0.252  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe-----------E-----EEEEEEeCCChhhhccchhhhhccCc
Q 028647           19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-----------L-----FTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus        19 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      ++||||+.++.+.........+.|..+--..+..+..           .     -.+.||||||++.+.......+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            3499999999988776544444443333333332210           0     12799999999999877777778899


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc--------------cccHHHHH--
Q 028647           83 CCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--------------VVSEKKAR--  143 (206)
Q Consensus        83 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--------------~~~~~~~~--  143 (206)
                      ++++|+|+++   +.+++.+.    .+..    .   ++|+++|+||+|+......              +...++..  
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~----~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~  620 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ----Y---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIK  620 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH----c---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHH
Confidence            9999999987   33333322    1111    1   6799999999999643110              00011110  


Q ss_pred             --HH---HHh--------------cCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          144 --AW---CAS--------------KGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       144 --~~---~~~--------------~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                        ++   ...              .+.++++++||++|+|+++|+.+|....
T Consensus       621 l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        621 LYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence              11   011              1347899999999999999999886544

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.53  E-value=2.5e-14  Score=104.78  Aligned_cols=115  Identities=18%  Similarity=0.163  Sum_probs=59.9

Q ss_pred             EEEEEeCCChhhhccchhhhh--------ccCcEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNSMKSFD-NLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                      .+.++|||||.++...+...-        ...-++++++|+....+.. .+..++..+......    +.|.+.|+||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence            478999999987765554333        3456888899986432211 122222222111111    789999999999


Q ss_pred             CCCCCc-----c---------------cccHHHHHHHHHhcCCC-cEEEeeccCCCCHHHHHHHHHHHH
Q 028647          129 VDGGNS-----R---------------VVSEKKARAWCASKGNI-PYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       129 l~~~~~-----~---------------~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      +.....     +               ....+.+.++...++.. +++++|+.+++++++++..+-+.+
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            987310     0               01111222222334445 899999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.53  E-value=1.7e-13  Score=102.40  Aligned_cols=152  Identities=20%  Similarity=0.196  Sum_probs=102.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEEEEe
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF---------------------------------SNQYKATIGADFLTKEVQF   52 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   52 (206)
                      +..++.+-.|+..=||||||.||+.+.-                                 ..+.+.+.+.+...+.+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            5568999999999999999999874211                                 1122233444444444333


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCC
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDG  131 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  131 (206)
                        ...++.+.|||||+.|.+.+-.-...||++|+++|+...-. ++..+ ...+...+      +++ +++..||+||.+
T Consensus        84 --~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-~QTrR-Hs~I~sLL------GIrhvvvAVNKmDLvd  153 (431)
T COG2895          84 --EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-EQTRR-HSFIASLL------GIRHVVVAVNKMDLVD  153 (431)
T ss_pred             --ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-HHhHH-HHHHHHHh------CCcEEEEEEeeecccc
Confidence              33568899999999999999999999999999999975322 11111 11122111      555 889999999998


Q ss_pred             CCcc--cccHHHHHHHHHhcC--CCcEEEeeccCCCCHHH
Q 028647          132 GNSR--VVSEKKARAWCASKG--NIPYFETSAKEGINVEE  167 (206)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~  167 (206)
                      ....  .....+...|+.+++  ...++++||..|+|+-.
T Consensus       154 y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         154 YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            6422  223344555666665  35789999999998754

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.53  E-value=3.1e-14  Score=103.06  Aligned_cols=171  Identities=16%  Similarity=0.195  Sum_probs=98.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCccceeEEEEEEEe-------------------------
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQF-------------------------   52 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~-------------------------   52 (206)
                      .+.+.-|+|+|..|||||||+++|...-       |..+.+|....-++...+++                         
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            3557889999999999999999986421       11112222111111111110                         


Q ss_pred             ----------------CCeEEEEEEEeCCChhhhcc------chhhhhc--cCcEEEEEEECCC---hhhHHHHHHHHHH
Q 028647           53 ----------------EDRLFTLQIWDTAGQERFQS------LGVAFYR--GADCCVLVYDVNS---MKSFDNLNNWREE  105 (206)
Q Consensus        53 ----------------~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~  105 (206)
                                      ....+...++|||||.+...      .....+.  ..-++++++|...   |-+|-.-.-+.-.
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence                            11224478999999754322      2222222  3457778888654   3333322222222


Q ss_pred             HHhhcCCCCCCCCcEEEEEeCCCCCCCCccc---ccHHHHHHHHH--------------------hcCCCcEEEeeccCC
Q 028647          106 FLIQASPSDPDNFPFVVLGNKIDVDGGNSRV---VSEKKARAWCA--------------------SKGNIPYFETSAKEG  162 (206)
Q Consensus       106 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~--------------------~~~~~~~~~~S~~~~  162 (206)
                      ++..      .+.|+|+|+||+|+.......   .+.+..++..+                    -+.....+.+|+.+|
T Consensus       176 ilyk------tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG  249 (366)
T KOG1532|consen  176 ILYK------TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG  249 (366)
T ss_pred             HHHh------ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence            2222      278999999999998754322   22222222222                    134577999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCc
Q 028647          163 INVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~~  181 (206)
                      .|++++|..+.+.+-++..
T Consensus       250 ~G~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  250 EGFDDFFTAVDESVDEYEE  268 (366)
T ss_pred             CcHHHHHHHHHHHHHHHHH
Confidence            9999999998877655433

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.53  E-value=1.1e-12  Score=93.92  Aligned_cols=159  Identities=18%  Similarity=0.190  Sum_probs=112.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhcc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   80 (206)
                      ..+|+++|.|.+|||||+..++.-........+++.+..+..+.+++.  .+++.|.||.-+-       .+......+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeec
Confidence            478999999999999999999876655555666777788888888884  5788999993322       3345567788


Q ss_pred             CcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCC-------------------------------------------
Q 028647           81 ADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPD-------------------------------------------  116 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~-------------------------------------------  116 (206)
                      +|.+++|+|++..+.... +.+-++.+--.++...+.                                           
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            999999999997654332 233333322111111110                                           


Q ss_pred             ------------------CCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          117 ------------------NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       117 ------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                                        .++.+.|-||+|.       .+.++..+++.+.+   -+.+|+....|++.+++.+.+.+--
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-------vs~eevdrlAr~Pn---svViSC~m~lnld~lle~iWe~l~L  289 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-------VSIEEVDRLARQPN---SVVISCNMKLNLDRLLERIWEELNL  289 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccce-------ecHHHHHHHhcCCC---cEEEEeccccCHHHHHHHHHHHhce
Confidence                              1266778888884       45777777776654   4667888999999999999997643

>cd01882 BMS1 Bms1

Probab=99.52  E-value=4.7e-13  Score=97.71  Aligned_cols=142  Identities=17%  Similarity=0.187  Sum_probs=84.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .++..|+++|++|+|||||++.+....-........+. +   .+ ......++.++|+||..   ......++.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            45678999999999999999999864221111111111 1   11 11133567899999864   33344568899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCc-ccccHHHHHH-HH-HhcCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGNKIDVDGGNS-RVVSEKKARA-WC-ASKGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~S~~~  161 (206)
                      +++|++....... ...+..+..    .   +.|. ++|+||+|+.+... .....+.+++ +. ...++.+++++||++
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~----~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~  180 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQV----H---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV  180 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHH----c---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence            9999986443222 122222211    1   5674 55999999975421 1122233333 22 234568999999887


Q ss_pred             CC
Q 028647          162 GI  163 (206)
Q Consensus       162 ~~  163 (206)
                      .-
T Consensus       181 ~~  182 (225)
T cd01882         181 HG  182 (225)
T ss_pred             CC
Confidence            64

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.52  E-value=7.3e-13  Score=94.75  Aligned_cols=104  Identities=16%  Similarity=0.144  Sum_probs=64.2

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (206)
                      ....++++.|..-.... ...  -+|.++.|+|+.+.++...  .+..++          ...-++++||+|+.+..  .
T Consensus        92 ~D~iiIEt~G~~l~~~~-~~~--l~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~~--~  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATF-SPE--LADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPMV--G  154 (199)
T ss_pred             CCEEEEECCCCCccccc-chh--hhCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhccccc--c
Confidence            34567777773211111 111  2688999999987655221  111111          22348999999998531  1


Q ss_pred             ccHHHHHHHHHh-cCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          137 VSEKKARAWCAS-KGNIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ...+...+.... .+..+++++|+++|+|+++++++|.++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            223333333333 44589999999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.52  E-value=9.3e-13  Score=97.14  Aligned_cols=124  Identities=16%  Similarity=0.128  Sum_probs=73.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cc---
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SL---   73 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~---   73 (206)
                      .....++|+|+|.+|+|||||+|+|++...... .....+..........++  ..+.++||||.....      ..   
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            345679999999999999999999998765422 222233333333334444  568999999944331      11   


Q ss_pred             -hhhhhc--cCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           74 -GVAFYR--GADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        74 -~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                       ...++.  ..|++++|..++... ... -...+..+...+...-  -.++++|+||+|....
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p  164 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence             112232  578888887666432 111 1223333332222100  2479999999998654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.51  E-value=1.1e-13  Score=117.98  Aligned_cols=119  Identities=16%  Similarity=0.175  Sum_probs=81.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCccceeEEEEEEEe--------------C
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVQF--------------E   53 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~   53 (206)
                      ..++..+|+|+|+.++|||||+.+|+...-.                .......+.......+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            4566789999999999999999999753311                011111122211222222              1


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      +..+.+.++||||+..|.......++.+|++|+|+|+..+.......-| ......       ++|+++++||+|+.
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~~-------~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE-------RIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHHC-------CCCEEEEEECCccc
Confidence            2356789999999999999999999999999999999876443332222 222211       78999999999987

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.51  E-value=1.2e-12  Score=98.14  Aligned_cols=126  Identities=16%  Similarity=0.144  Sum_probs=72.9

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc---hhhh
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---GVAF   77 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~   77 (206)
                      ++.+.+.++|+++|.+|+||||++|+|++..... ......+..........++  ..+.++||||.......   ....
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence            3455678999999999999999999999876432 1122222222222333344  67899999995432111   1112


Q ss_pred             h------ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           78 Y------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        78 ~------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                      +      ...|++++|..++.....+.-...+..+...+...-  -.++|||+|+.|...
T Consensus       110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~  167 (313)
T TIGR00991       110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence            2      258999999665432111111222333333322110  247899999999764

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=6.1e-13  Score=97.29  Aligned_cols=178  Identities=18%  Similarity=0.217  Sum_probs=114.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC----------CCC----CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK----------KFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (206)
                      +.++.+||..+|+.+-|||||...++.-          .|.    .-.+...+.++....+.++-....+...|+||+..
T Consensus         8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD   87 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence            5678999999999999999998887531          111    11122234444444444444445678899999999


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-ccccHHHHHHHHH
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNS-RVVSEKKARAWCA  147 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~  147 (206)
                      |-..+..-..+.|+.|+|+++++...-+.-.    .++...+.    ++| +++++||+|+.++.+ .+....+.+++..
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrE----HiLlarqv----Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs  159 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTRE----HILLARQV----GVPYIVVFLNKVDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcchh----hhhhhhhc----CCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999854323221    12212122    676 788999999987533 3345667888888


Q ss_pred             hcC----CCcEEEeeccCCC--------CHHHHHHHHHHHHHhcCccccccCCccccc
Q 028647          148 SKG----NIPYFETSAKEGI--------NVEEAFQCIAKNALKSGEEEEIYLPDTIDV  193 (206)
Q Consensus       148 ~~~----~~~~~~~S~~~~~--------~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~  193 (206)
                      .++    ..|++.-|+..-.        .|.+|++.+.+++    +.++.....++.+
T Consensus       160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi----p~Per~~dkPflm  213 (394)
T COG0050         160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI----PTPERDIDKPFLM  213 (394)
T ss_pred             HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC----CCCCCcccccccc
Confidence            875    3567777765311        2455555555544    4444444344333

>PTZ00416 elongation factor 2; Provisional

Probab=99.50  E-value=1.6e-13  Score=116.87  Aligned_cols=118  Identities=19%  Similarity=0.195  Sum_probs=79.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCccceeEEEEEEEeC--------CeEEEEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVQFE--------DRLFTLQ   60 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~   60 (206)
                      .+...+|+++|+.++|||||+++|+...-.                .....+.+.......+.+.        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            455679999999999999999999853211                0011111111111222232        2256789


Q ss_pred             EEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      ++||||+..+.......++.+|++|+|+|+..+-..... ..+..+..    .   ++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----E---RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----c---CCCEEEEEEChhhh
Confidence            999999999988889999999999999999875432322 22222221    1   67999999999987

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.50  E-value=6.8e-13  Score=96.09  Aligned_cols=164  Identities=16%  Similarity=0.120  Sum_probs=93.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchh----
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGV----   75 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~----   75 (206)
                      .+|+|+|.+||||||++|.+++........  ...+.........+++  ..+.++||||-..       ......    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            489999999999999999999887654332  2233444445556677  4578999999211       111111    


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc-----cHHHHHHHHHhcC
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-----SEKKARAWCASKG  150 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~  150 (206)
                      ....+.|++++|+.+... +.. -...+..+...+...-  -..++||+|..|.........     ..+.++++....+
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~-~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~  154 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEE-DREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG  154 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHH-HHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCeEEEEEEecCcc-hHH-HHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence            123568999999999832 211 1222223333332210  235899999888665533111     1234566677777


Q ss_pred             CCcEEEeecc------CCCCHHHHHHHHHHHHHhc
Q 028647          151 NIPYFETSAK------EGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       151 ~~~~~~~S~~------~~~~i~~l~~~l~~~~~~~  179 (206)
                       ..++.++.+      ....+.+|++.+-+-+.+.
T Consensus       155 -~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  155 -GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             -TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence             577777776      3345778888777766554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.49  E-value=3e-12  Score=98.35  Aligned_cols=83  Identities=24%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE---------------EEEEEEeCCChhh----
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQER----   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~----   69 (206)
                      ++|+++|.||+|||||+|+|++........+.+|.++....+.+.+..               .++.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999887544455666666655555554421               2589999999321    


Q ss_pred             ---hccchhhhhccCcEEEEEEECC
Q 028647           70 ---FQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        70 ---~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1223344567899999999984

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.48  E-value=1.9e-12  Score=102.47  Aligned_cols=163  Identities=19%  Similarity=0.308  Sum_probs=119.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..++.+++.|+|+.++|||.+++.|.++.+......+....+....+...+..-.+.+.|.+-. ........- ..||+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3467899999999999999999999999888766666666666777766676666777777754 222222222 67999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      ++++||.+++.+++.....+...... .     ++|+++|++|+|+.+.  .+...-+..+++.+++--+.+.+|.+...
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~-----~~Pc~~va~K~dlDe~--~Q~~~iqpde~~~~~~i~~P~~~S~~~~~  570 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL-Y-----KIPCLMVATKADLDEV--PQRYSIQPDEFCRQLGLPPPIHISSKTLS  570 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc-c-----CCceEEEeeccccchh--hhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence            99999999999999887766544332 2     8899999999999876  33333333778888875566777777422


Q ss_pred             CHHHHHHHHHHHHH
Q 028647          164 NVEEAFQCIAKNAL  177 (206)
Q Consensus       164 ~i~~l~~~l~~~~~  177 (206)
                      . .++|..|...+.
T Consensus       571 s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  571 S-NELFIKLATMAQ  583 (625)
T ss_pred             C-chHHHHHHHhhh
Confidence            3 888888887663

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=2.7e-12  Score=101.61  Aligned_cols=158  Identities=22%  Similarity=0.257  Sum_probs=101.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC--------------------CC---------CCCCCccceeEEEEEEEeCCe
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--------------------FS---------NQYKATIGADFLTKEVQFEDR   55 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~   55 (206)
                      .+..++++|+|+..+|||||+.+++..-                    ..         ...+...|.+.......++-.
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            3567999999999999999999986410                    00         011112233334444445555


Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh---hHHHHHH--HHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNN--WREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      ...++|+|.||+..|-..+..-+..+|++++|+|++..+   .|+...+  -...+++.+.     -..++|++||+|+.
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-----i~qlivaiNKmD~V  328 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-----ISQLIVAINKMDLV  328 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-----cceEEEEeeccccc
Confidence            567899999999999999999999999999999998532   1221111  1112222222     23589999999998


Q ss_pred             CCCc--ccccHHHHHHHH-HhcC----CCcEEEeeccCCCCHHH
Q 028647          131 GGNS--RVVSEKKARAWC-ASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       131 ~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      +...  .+.....+..|. ...+    .+.|++||+..|+|+-.
T Consensus       329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            7532  122233344444 3332    35799999999998654

>cd00066 G-alpha G protein alpha subunit

Probab=99.47  E-value=3.7e-12  Score=97.50  Aligned_cols=125  Identities=13%  Similarity=0.131  Sum_probs=83.1

Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS-------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                      .+.+.+||++|+...+..|.+++.+++++++|+|+++.+.       ...+..-+..+...+......+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            3668999999999999999999999999999999987311       122223233333333333334889999999999


Q ss_pred             CCCCC--------------cccccHHHHHHHHHh-----c----CCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          129 VDGGN--------------SRVVSEKKARAWCAS-----K----GNIPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       129 l~~~~--------------~~~~~~~~~~~~~~~-----~----~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +....              ......+.+..+...     .    ..+....++|.+..+++.+|+.+.+.++...
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            74321              001233333333221     1    1244577889999999999988888877643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.46  E-value=1.1e-11  Score=95.54  Aligned_cols=178  Identities=16%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC----CCC------------CCCCCc---cceeEEE---EEEE---eCCeEEEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK----KFS------------NQYKAT---IGADFLT---KEVQ---FEDRLFTLQ   60 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~---~~~~~~~~~   60 (206)
                      .-.+.|+|+|+.++|||||+++|.+.    ...            +...++   +|+++..   ..+.   .++....+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            44688999999999999999999886    222            122222   3333322   2222   245556789


Q ss_pred             EEeCCChhhh-------ccc----------------------hhhhhc-cCcEEEEEE-ECC-----ChhhHHHHHHHHH
Q 028647           61 IWDTAGQERF-------QSL----------------------GVAFYR-GADCCVLVY-DVN-----SMKSFDNLNNWRE  104 (206)
Q Consensus        61 i~D~~g~~~~-------~~~----------------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~  104 (206)
                      ++||+|-..-       ...                      ++..+. ++++.++|. |.+     ...-.+.-.+++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999992110       011                      334455 899999998 774     0111222344445


Q ss_pred             HHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC--CCHHHHHHHHHHHHHhcCcc
Q 028647          105 EFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG--INVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       105 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~i~~l~~~l~~~~~~~~~~  182 (206)
                      ++...       ++|+++|+|+.|-...    ...+...++...++ ++++.+|+..-  +.+..+++.+    +-..|.
T Consensus       175 eLk~~-------~kPfiivlN~~dp~~~----et~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~v----L~EFPv  238 (492)
T TIGR02836       175 ELKEL-------NKPFIILLNSTHPYHP----ETEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEV----LYEFPI  238 (492)
T ss_pred             HHHhc-------CCCEEEEEECcCCCCc----hhHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHH----HhcCCc
Confidence            44433       8899999999993322    23444455666677 88888887753  2344444443    333444


Q ss_pred             ccc--cCCcccccCCCCCC
Q 028647          183 EEI--YLPDTIDVGNSSQP  199 (206)
Q Consensus       183 ~~~--~~~~~~~~~~~~~~  199 (206)
                      .+.  ..|.++.+-...+|
T Consensus       239 ~Ei~~~~P~Wve~L~~~Hw  257 (492)
T TIGR02836       239 LEINIDLPSWVEVLDENHW  257 (492)
T ss_pred             eEEEeeCchHHHhcCCCch
Confidence            443  56677666555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.44  E-value=3.3e-12  Score=92.23  Aligned_cols=154  Identities=15%  Similarity=0.159  Sum_probs=84.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------C-----CCCCcc--ceeEEEEEEE------------------eC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-------N-----QYKATI--GADFLTKEVQ------------------FE   53 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-------~-----~~~~~~--~~~~~~~~~~------------------~~   53 (206)
                      .....|+++|+.|+|||||+++++.....       .     ......  ..........                  ..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            34688999999999999999998753110       0     000000  0000000000                  00


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                      .....+.++++.|.-...   ..+....+..+.|+|..+.+..  .......+          ..|.++++||+|+.+..
T Consensus       100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~~~----------~~a~iiv~NK~Dl~~~~  164 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPGMF----------KEADLIVINKADLAEAV  164 (207)
T ss_pred             cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHhHH----------hhCCEEEEEHHHccccc
Confidence            011345677777721000   0111234556677887754321  11111111          55789999999997531


Q ss_pred             cccccHHHHHHHHH-hcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          134 SRVVSEKKARAWCA-SKGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       134 ~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                        ....+...+... ..+..+++.+|++++.|++++++++.++.
T Consensus       165 --~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       165 --GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             --hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence              111222333222 33458899999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>smart00275 G_alpha G protein alpha subunit

Probab=99.43  E-value=9e-12  Score=96.15  Aligned_cols=121  Identities=14%  Similarity=0.155  Sum_probs=82.0

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh----------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK----------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  126 (206)
                      +.+.+||.+|+...+..|.+++.+++++++|+|+++.+          .+......+..+   +......+.|+++++||
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l---~~~~~~~~~piil~~NK  260 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI---CNSRWFANTSIILFLNK  260 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH---HcCccccCCcEEEEEec
Confidence            45789999999999999999999999999999999632          233333333333   33333448999999999


Q ss_pred             CCCCCCC-------------cccccHHHHHHHHH-----hcC-----CCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          127 IDVDGGN-------------SRVVSEKKARAWCA-----SKG-----NIPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       127 ~Dl~~~~-------------~~~~~~~~~~~~~~-----~~~-----~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      .|+....             ......+.+..+..     ...     .+....++|.+..+++.+|+.+.+.+++..
T Consensus       261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            9984321             00012233333221     111     244577889999999999998888777643

Subunit of G proteins that contains the guanine nucleotide binding site

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.42  E-value=5.2e-12  Score=88.26  Aligned_cols=62  Identities=18%  Similarity=0.216  Sum_probs=42.1

Q ss_pred             EEEEeCCChh----hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           59 LQIWDTAGQE----RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        59 ~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                      +.|+|+||..    .....+..++..+|++++|.+++...+-.....+.......       ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence            7999999943    23356778889999999999999865544443333333221       34589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.42  E-value=2.3e-12  Score=99.12  Aligned_cols=166  Identities=14%  Similarity=0.152  Sum_probs=82.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc---eeEEEEEEEeCCeEEEEEEEeCCChhhhccchhh-----h
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG---ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----F   77 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~   77 (206)
                      ..+++|+|+|.+|+|||||||.|.+-.-.......+|   ++.....+.... .-.+.+||.||.....-....     -
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            4579999999999999999999975322211111111   111111121111 114789999995332222222     2


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC--CC-------CCcccccHHHHHHHHHh
Q 028647           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV--DG-------GNSRVVSEKKARAWCAS  148 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl--~~-------~~~~~~~~~~~~~~~~~  148 (206)
                      +...|.+|++.+..=.+   .-..+...+...       ++|+++|-+|+|.  .+       ...++...+++++-+..
T Consensus       112 ~~~yD~fiii~s~rf~~---ndv~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~  181 (376)
T PF05049_consen  112 FYRYDFFIIISSERFTE---NDVQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE  181 (376)
T ss_dssp             GGG-SEEEEEESSS--H---HHHHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCCCch---hhHHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence            45689888877654222   222333444433       7899999999995  11       11122233343333322


Q ss_pred             ------cCCCcEEEeeccCCC--CHHHHHHHHHHHHHhcCcc
Q 028647          149 ------KGNIPYFETSAKEGI--NVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       149 ------~~~~~~~~~S~~~~~--~i~~l~~~l~~~~~~~~~~  182 (206)
                            ....+++-+|+.+-.  ++..|.+.|.+.++..+..
T Consensus       182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence                  123578999988754  5788999998887665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.41  E-value=5.2e-12  Score=94.78  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=78.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------   69 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (206)
                      -.++|+|+|.+|+|||||+|.|++.......          ..+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999986544321          12222333344455577788999999999110       


Q ss_pred             -----------hccch---------hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           70 -----------FQSLG---------VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        70 -----------~~~~~---------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                                 +....         ...=...|+++++++++...--+.-...+..+    ..    .+++|-|+.|+|.
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L----s~----~vNvIPvIaKaD~  154 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL----SK----RVNVIPVIAKADT  154 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH----TT----TSEEEEEESTGGG
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh----cc----cccEEeEEecccc
Confidence                       00000         00013579999999987532111111222222    32    6789999999998


Q ss_pred             CCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647          130 DGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      ....+.....+.+.+-....+ +.++.....
T Consensus       155 lt~~el~~~k~~i~~~l~~~~-I~~f~f~~~  184 (281)
T PF00735_consen  155 LTPEELQAFKQRIREDLEENN-IKIFDFPED  184 (281)
T ss_dssp             S-HHHHHHHHHHHHHHHHHTT---S------
T ss_pred             cCHHHHHHHHHHHHHHHHHcC-ceeeccccc
Confidence            765444444555555555555 655554443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.41  E-value=1.6e-12  Score=96.02  Aligned_cols=96  Identities=19%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             hhhccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC  146 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  146 (206)
                      +++..+...+++++|.+++|+|+.++. +++.+.+|+..+..       .++|+++|+||+||.+.  .....+....+.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~--~~~~~~~~~~~~   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD--EDMEKEQLDIYR   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC--HHHHHHHHHHHH
Confidence            556677778899999999999999887 89999898875532       17899999999999754  333334444443


Q ss_pred             HhcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647          147 ASKGNIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       147 ~~~~~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                       ..+ .+++++||++|.|++++++.+.+
T Consensus        95 -~~g-~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        95 -NIG-YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             -HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence             444 78999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.4e-12  Score=105.62  Aligned_cols=168  Identities=22%  Similarity=0.239  Sum_probs=106.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc----ceeEEEEEE--------EeCCe----EEEEEEEeCCChhhhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEV--------QFEDR----LFTLQIWDTAGQERFQ   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~----~~~~~i~D~~g~~~~~   71 (206)
                      ..-+||+|+..+|||-|+..+.+.++......+.    |.++.+..-        .-.++    .--+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            4568999999999999999998766554333332    223322220        00000    0136789999999999


Q ss_pred             cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-----------------
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----------------  134 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------------  134 (206)
                      .+.......||.+|+|+|+.++-.-+++..+ . +++      .++.|+||++||+|..-.-.                 
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-~-lLR------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-N-LLR------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHHH-H-HHH------hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            9988888899999999999864222222221 1 111      12889999999999753200                 


Q ss_pred             -----ccccHHHHHHHHHh-------c------CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccc
Q 028647          135 -----RVVSEKKARAWCAS-------K------GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       135 -----~~~~~~~~~~~~~~-------~------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~  183 (206)
                           .......+.+|..+       |      ..+.++++||..|+||-+|+.+|++.........
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                 00111111122211       0      1256899999999999999999998776554443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.40  E-value=1.3e-11  Score=93.99  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR  135 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (206)
                      .+.+.|+||+|..   ......+..+|.++++......   +.+..+...+.         ++|.++|+||+|+......
T Consensus       126 g~D~viidT~G~~---~~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~~  190 (300)
T TIGR00750       126 GYDVIIVETVGVG---QSEVDIANMADTFVVVTIPGTG---DDLQGIKAGLM---------EIADIYVVNKADGEGATNV  190 (300)
T ss_pred             CCCEEEEeCCCCc---hhhhHHHHhhceEEEEecCCcc---HHHHHHHHHHh---------hhccEEEEEcccccchhHH
Confidence            3567899999843   1122356668888888655433   33333322221         6688999999999865321


Q ss_pred             cccHHH----HHHHHHhc-C-CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          136 VVSEKK----ARAWCASK-G-NIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       136 ~~~~~~----~~~~~~~~-~-~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ......    ...+.... + ..+++++|+.++.|++++++++.+..-
T Consensus       191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            110111    11111111 1 146999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.38  E-value=2.6e-12  Score=95.18  Aligned_cols=160  Identities=16%  Similarity=0.158  Sum_probs=109.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh---------hhhccchhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ---------ERFQSLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~~   76 (206)
                      .....|.|+|..|+|||||++.|+.....+...-+.+.+..........+. .+.+.||-|.         ..|.. +..
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A-TLe  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA-TLE  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence            345679999999999999999999777666666666666655555555554 3568899992         22222 334


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .+..+|+++.|.|+++|+.-+.....+..+....-...+....++=|-||+|..+.....+          .+   ..+.
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n---~~v~  320 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KN---LDVG  320 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----------cC---Cccc
Confidence            4567999999999999977555555555444332222222234677888999876522111          11   1578


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhcC
Q 028647          157 TSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +|+.+|+|++++.+.+-..+....
T Consensus       321 isaltgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             cccccCccHHHHHHHHHHHhhhhh
Confidence            899999999999999888775543

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=6.4e-12  Score=104.05  Aligned_cols=123  Identities=18%  Similarity=0.180  Sum_probs=86.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      .+...+|.++|+..+|||||..+++...-.                  .....+.+.......+.+.+ .+.+.++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            456789999999999999999998642111                  11122233333333333443 47899999999


Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV  136 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (206)
                      |-.|.......++-+|++++|+|+...-..+.-.-|.+..     ..   ++|.++++||+|....+...
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-----~~---~vp~i~fiNKmDR~~a~~~~  147 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-----KY---GVPRILFVNKMDRLGADFYL  147 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-----hc---CCCeEEEEECccccccChhh
Confidence            9999999999999999999999998754433332332222     11   88999999999998765433

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.36  E-value=2e-13  Score=98.98  Aligned_cols=151  Identities=21%  Similarity=0.250  Sum_probs=86.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC------CC-----CC----CCCccc-----------eeEEEEEEEeCC-----
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKK------FS-----NQ----YKATIG-----------ADFLTKEVQFED-----   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~------~~-----~~----~~~~~~-----------~~~~~~~~~~~~-----   54 (206)
                      .+.+.|.|.|+||+|||||++.|...-      +.     +.    ..+..|           ...+.+.+-..+     
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            456899999999999999999986311      00     00    001111           123333332111     


Q ss_pred             -------------eEEEEEEEeCCC--hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc
Q 028647           55 -------------RLFTLQIWDTAG--QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP  119 (206)
Q Consensus        55 -------------~~~~~~i~D~~g--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p  119 (206)
                                   ..+.+.|++|.|  |.+.     ....-+|.+++|..+.-.+..+.+..-+.++            +
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------------a  169 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------------A  169 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------------c
Confidence                         123467778876  4332     2345699999999988766655544433333            4


Q ss_pred             EEEEEeCCCCCCCCcccccHHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKG------NIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       120 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      -++|+||.|+...   .....+++.......      ..+++.+||.++.|+++|++.|.++.
T Consensus       170 Di~vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  170 DIFVVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             SEEEEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cEEEEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5999999996543   222333333332211      25899999999999999999998854

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.36  E-value=1.5e-12  Score=90.14  Aligned_cols=81  Identities=17%  Similarity=0.066  Sum_probs=53.2

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH-HHhcCCCcEEEeecc
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW-CASKGNIPYFETSAK  160 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~  160 (206)
                      +.-++|+|.+..+...  .+-...+          ...-++|+||.|+++....  +.+...+- .+..+..+++++|++
T Consensus       119 ~~~v~VidvteGe~~P--~K~gP~i----------~~aDllVInK~DLa~~v~~--dlevm~~da~~~np~~~ii~~n~k  184 (202)
T COG0378         119 HLRVVVIDVTEGEDIP--RKGGPGI----------FKADLLVINKTDLAPYVGA--DLEVMARDAKEVNPEAPIIFTNLK  184 (202)
T ss_pred             ceEEEEEECCCCCCCc--ccCCCce----------eEeeEEEEehHHhHHHhCc--cHHHHHHHHHHhCCCCCEEEEeCC
Confidence            3788888888654211  0100111          1145899999999987433  33333332 333466899999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028647          161 EGINVEEAFQCIAKNA  176 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~  176 (206)
                      +|+|++++++++....
T Consensus       185 tg~G~~~~~~~i~~~~  200 (202)
T COG0378         185 TGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CCcCHHHHHHHHHhhc
Confidence            9999999999998764

>smart00053 DYNc Dynamin, GTPase

Probab=99.35  E-value=3.5e-11  Score=88.00  Aligned_cols=68  Identities=13%  Similarity=0.048  Sum_probs=42.1

Q ss_pred             EEEEEeCCChhh-------------hccchhhhhcc-CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 028647           58 TLQIWDTAGQER-------------FQSLGVAFYRG-ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL  123 (206)
Q Consensus        58 ~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv  123 (206)
                      .+.++|+||-..             ...+...++++ .+++++|+|+...-.-.....+...+..       .+.|+++|
T Consensus       126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-------~~~rti~V  198 (240)
T smart00053      126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-------QGERTIGV  198 (240)
T ss_pred             ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-------cCCcEEEE
Confidence            489999999531             12334556664 4689999988643221222222222221       17799999


Q ss_pred             EeCCCCCCC
Q 028647          124 GNKIDVDGG  132 (206)
Q Consensus       124 ~nK~Dl~~~  132 (206)
                      +||.|....
T Consensus       199 iTK~D~~~~  207 (240)
T smart00053      199 ITKLDLMDE  207 (240)
T ss_pred             EECCCCCCc
Confidence            999998764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=3.4e-11  Score=89.90  Aligned_cols=185  Identities=19%  Similarity=0.156  Sum_probs=121.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc----------CCCCC----CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVN----------KKFSN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (206)
                      +++++.||.-+|+..-|||||...++.          .+|.+    ..+...+.++....+.++-....+.-.|+||+..
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            568899999999999999999887753          11111    1122345555566666655555667789999999


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCC-CcccccHHHHHHHHH
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG-NSRVVSEKKARAWCA  147 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~  147 (206)
                      |-..+..-..+.|+.|+|+.++|...-+.-..++    ...+.    +++ ++|.+||.|+.++ +-.+..+.+++++.+
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL----LArQV----GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs  201 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLL----LARQV----GVKHIVVFINKVDLVDDPEMLELVEMEIRELLS  201 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCCCcchHHHHH----HHHHc----CCceEEEEEecccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999865433322222    11111    444 8899999999843 334455667888888


Q ss_pred             hcC----CCcEEEeecc---CCCCH---HHHHHHHHHHHHhcCccccccCCcccccCCC
Q 028647          148 SKG----NIPYFETSAK---EGINV---EEAFQCIAKNALKSGEEEEIYLPDTIDVGNS  196 (206)
Q Consensus       148 ~~~----~~~~~~~S~~---~~~~i---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  196 (206)
                      .++    ..|++.-||.   +|.+-   .+....|++++-.+.+.++.....++-++..
T Consensus       202 e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie  260 (449)
T KOG0460|consen  202 EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIE  260 (449)
T ss_pred             HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehh
Confidence            775    4678876654   44321   1334445555555556666666665555443

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.32  E-value=8e-12  Score=88.45  Aligned_cols=147  Identities=22%  Similarity=0.343  Sum_probs=94.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----chhhhhccC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGA   81 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~   81 (206)
                      .-||+++|.+|||||++=..+...... +...++.+.++......+-|. ..+.+||.+|++.+-.     .....+.+.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            358999999999999875444322211 233455555665555555544 5689999999885433     344577899


Q ss_pred             cEEEEEEECCChhhHHHH---HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH----HHHhcCCCcE
Q 028647           82 DCCVLVYDVNSMKSFDNL---NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA----WCASKGNIPY  154 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~  154 (206)
                      +++++|||+...+....+   +..+..+..+..     ...+++.+.|+|+.....+....++...    +..... ..+
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-----~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~-~~~  156 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-----EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLE-CKC  156 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-----cceEEEEEeechhcccchHHHHHHHHHHHHHHhccccc-ccc
Confidence            999999999876544444   344444444333     5678999999999876555443333332    222233 667


Q ss_pred             EEeeccC
Q 028647          155 FETSAKE  161 (206)
Q Consensus       155 ~~~S~~~  161 (206)
                      +++|-.+
T Consensus       157 f~TsiwD  163 (295)
T KOG3886|consen  157 FPTSIWD  163 (295)
T ss_pred             cccchhh
Confidence            7777665

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.6e-10  Score=87.85  Aligned_cols=84  Identities=21%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC----------------CeEEEEEEEeCCC-----
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAG-----   66 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g-----   66 (206)
                      .++++++|.||+|||||+|.++.......-.|+.|.++......+.                -....+.|+|.+|     
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            4789999999999999999999877555556666665555444321                1234689999999     


Q ss_pred             --hhhhccchhhhhccCcEEEEEEECC
Q 028647           67 --QERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        67 --~~~~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                        .+...+....-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              3344555566778999999999976

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.31  E-value=2.1e-10  Score=87.34  Aligned_cols=135  Identities=13%  Similarity=0.183  Sum_probs=92.9

Q ss_pred             EEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCC
Q 028647           45 FLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDN  117 (206)
Q Consensus        45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~  117 (206)
                      +....+.+.+  ..+.+.|.+||..-+..|.+.+.+++++|||+++++-+       ....+.+-+..+...+......+
T Consensus       185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~  262 (354)
T KOG0082|consen  185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN  262 (354)
T ss_pred             eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence            3334444444  66899999999999999999999999999999998622       22334444555666666666668


Q ss_pred             CcEEEEEeCCCCCCCC-------------cccccHHHHHHHHH--------hc-CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          118 FPFVVLGNKIDVDGGN-------------SRVVSEKKARAWCA--------SK-GNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       118 ~p~ivv~nK~Dl~~~~-------------~~~~~~~~~~~~~~--------~~-~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      .++|+.+||.|+-+..             ......+++..+..        .. ..+....+.|.+..+|+.+|+.+.+.
T Consensus       263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~  342 (354)
T KOG0082|consen  263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT  342 (354)
T ss_pred             CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence            9999999999995421             01123333333321        11 22456778899999999999999998


Q ss_pred             HHhcCc
Q 028647          176 ALKSGE  181 (206)
Q Consensus       176 ~~~~~~  181 (206)
                      +...+-
T Consensus       343 Ii~~nl  348 (354)
T KOG0082|consen  343 IIQNNL  348 (354)
T ss_pred             HHHHHH
Confidence            876543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.30  E-value=1.6e-11  Score=91.56  Aligned_cols=57  Identities=16%  Similarity=0.083  Sum_probs=41.9

Q ss_pred             CCcEEEEEeCCCCCCCCcccccHHHH-HHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          117 NFPFVVLGNKIDVDGGNSRVVSEKKA-RAWCASKGNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       117 ~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      ..+-++|+||+|+....  ....+.. ..+....+..+++.+|+++|+|++++++||.+.
T Consensus       230 ~~ADIVVLNKiDLl~~~--~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYL--NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCccc--HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45679999999997631  1223333 333344567899999999999999999999874

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.30  E-value=5.4e-11  Score=90.25  Aligned_cols=162  Identities=18%  Similarity=0.182  Sum_probs=105.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------------CccceeEEEEEEEeCCeE--------------
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK--------------ATIGADFLTKEVQFEDRL--------------   56 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--------------   56 (206)
                      .+..+.+.+.|+-+.|||||+..|..++..+...              ...+.+.....+-+++..              
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            3567999999999999999999987654332221              122233333333333221              


Q ss_pred             -------EEEEEEeCCChhhhccchhhhh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           57 -------FTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        57 -------~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                             -.+.|.|+.|++.|.+....-+  ...|..++++.+++.-+--.-.. +- +...      ...|+++++||+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH-Lg-i~~a------~~lPviVvvTK~  265 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH-LG-IALA------MELPVIVVVTKI  265 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh-hh-hhhh------hcCCEEEEEEec
Confidence                   2378999999999988765443  45899999999997644222111 11 1111      178999999999


Q ss_pred             CCCCCCcccccHHHHHHHHHhcC------------------------CCcEEEeeccCCCCHHHHHHHHHH
Q 028647          128 DVDGGNSRVVSEKKARAWCASKG------------------------NIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                      |+.+++......+++..+.+..+                        -+|++.+|+.+|+|++-|.+.+..
T Consensus       266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            99887655555555555443321                        257999999999999865554443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.28  E-value=2.7e-10  Score=86.23  Aligned_cols=143  Identities=17%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc--
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--   72 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--   72 (206)
                      +.-.++|+++|+.|+|||||+|.|++......          ..++.........+.-++..+.+.++||||...+..  
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs   99 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS   99 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence            35579999999999999999999987632211          223344455555556677888999999999211100  


Q ss_pred             ------------chhhhh--------------ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647           73 ------------LGVAFY--------------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (206)
Q Consensus        73 ------------~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  126 (206)
                                  ....++              ...|++++.+.++...- ..+   --+.+..+..    .+.+|-|+.|
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l-~~~---DIe~Mk~ls~----~vNlIPVI~K  171 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGL-KPL---DIEAMKRLSK----RVNLIPVIAK  171 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCC-CHH---HHHHHHHHhc----ccCeeeeeec
Confidence                        000111              34799999998774221 111   1112222222    5678989999


Q ss_pred             CCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647          127 IDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus       127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +|.....+.....+.+.+....++ ++++.
T Consensus       172 aD~lT~~El~~~K~~I~~~i~~~n-I~vf~  200 (373)
T COG5019         172 ADTLTDDELAEFKERIREDLEQYN-IPVFD  200 (373)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhC-CceeC
Confidence            998876666677777777777776 77774

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.28  E-value=7.3e-11  Score=87.00  Aligned_cols=162  Identities=18%  Similarity=0.174  Sum_probs=94.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-----------CC----CCCccce-----------eEEEEEEEe-------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-----------NQ----YKATIGA-----------DFLTKEVQF-------   52 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-----------~~----~~~~~~~-----------~~~~~~~~~-------   52 (206)
                      -+...|.+.|.||+|||||+..|...-..           +.    ..+..|.           ..+.+.+.-       
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            34578999999999999999998532100           11    0111111           111222111       


Q ss_pred             -----------CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 028647           53 -----------EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV  121 (206)
Q Consensus        53 -----------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i  121 (206)
                                 +...+.+.|++|.|.-...   .....-+|.++++.-..-.+..+.+..-+.+            +--+
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE------------iaDi  193 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME------------IADI  193 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh------------hhhe
Confidence                       1122346788887732111   2234568999998877766665555443332            3459


Q ss_pred             EEEeCCCCCCCCcccccHHHHHHHHH-----hcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647          122 VLGNKIDVDGGNSRVVSEKKARAWCA-----SKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       122 vv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      +|+||.|................+..     .....+++.+||.+|+|++++++.+.++.-.....
T Consensus       194 ~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         194 IVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             eeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            99999996554211111222222221     11136899999999999999999999877544433

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.27  E-value=2.2e-10  Score=93.27  Aligned_cols=122  Identities=18%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc----------cch
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------SLG   74 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~   74 (206)
                      ...++|+|+|.+|+||||++|+|++.... .......++.........++  ..+.++||||.....          ...
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            34579999999999999999999987643 22221222222222233444  568999999944321          111


Q ss_pred             hhhhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           75 VAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        75 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                      ..++.  ..|++|+|..++.......-..++..+...+...-  -.-+|||+|..|..+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence            22333  47999999987632221111233344433333211  135899999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.1e-10  Score=88.38  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=81.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc--CCC--------------CC----CCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN--KKF--------------SN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~--~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      +....+||-+|.+|||||..+|+-  +..              ..    ..+..-|.++....+.++-....+.+.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            346789999999999999999752  100              00    0111234555555555555557789999999


Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |+.|...+-..+.-+|.+++|+|+...-.-.+. ++    +..+.   .+++|++=.+||.|....
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KL----feVcr---lR~iPI~TFiNKlDR~~r  148 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KL----FEVCR---LRDIPIFTFINKLDREGR  148 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHHH-HH----HHHHh---hcCCceEEEeeccccccC
Confidence            999988877777889999999999975432322 22    22222   228999999999998653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.25  E-value=4.2e-11  Score=94.38  Aligned_cols=171  Identities=26%  Similarity=0.440  Sum_probs=131.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .-+.+++.|+|..++|||+|+++++.+.|.....+.-+  .+..++.+++....+.+.|.+|..     ...|....|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence            35679999999999999999999999888765444432  235666677777778888888732     22355679999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ||||...+..+++.+..+...+.....   ...+|.++++++.-......+.....+..+++.......++++.+.+|.+
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGln  176 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLN  176 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhh
Confidence            999999999999998877776654444   22678888888866665555777777777777776668899999999999


Q ss_pred             HHHHHHHHHHHHHhcCccccc
Q 028647          165 VEEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~~~~~  185 (206)
                      +..+|..+...+....++...
T Consensus       177 v~rvf~~~~~k~i~~~~~qq~  197 (749)
T KOG0705|consen  177 VERVFQEVAQKIVQLRKYQQL  197 (749)
T ss_pred             HHHHHHHHHHHHHHHHhhhhc
Confidence            999999999887766544433

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=9.6e-12  Score=91.63  Aligned_cols=189  Identities=16%  Similarity=0.223  Sum_probs=124.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccceeE--EEEE---------------------------EE-
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADF--LTKE---------------------------VQ-   51 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~--~~~~---------------------------~~-   51 (206)
                      ++..++|.-+|+..-||||++..+.+-.   |....+...+...  ....                           .. 
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            4667999999999999999998875421   1111111111100  0000                           00 


Q ss_pred             --eCCe---EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q 028647           52 --FEDR---LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----MKSFDNLNNWREEFLIQASPSDPDNFPFVV  122 (206)
Q Consensus        52 --~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~iv  122 (206)
                        ..++   ...+.|.|+||++-....+..-..-.|++++++..+.    |.+.+.+..  -+++.        -..+++
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~--------Lkhiii  184 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK--------LKHIII  184 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh--------hceEEE
Confidence              0110   1247899999999888877777777899999998774    333332221  12221        236899


Q ss_pred             EEeCCCCCCCCcccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCCcccccCCCCCCC
Q 028647          123 LGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPR  200 (206)
Q Consensus       123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (206)
                      +-||+|+...+...+..++++.|...-  .+.|++++||.-..|++-+.++|.+.++.  |..+-..++..-+-.++...
T Consensus       185 lQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv--PvRdf~s~prlIVIRSFDVN  262 (466)
T KOG0466|consen  185 LQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV--PVRDFTSPPRLIVIRSFDVN  262 (466)
T ss_pred             EechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC--CccccCCCCcEEEEEeeccC
Confidence            999999998766667777888887653  35899999999999999999999998854  33333445555556667777


Q ss_pred             CCCcc
Q 028647          201 SSGCE  205 (206)
Q Consensus       201 ~~gc~  205 (206)
                      ++||+
T Consensus       263 kPG~e  267 (466)
T KOG0466|consen  263 KPGSE  267 (466)
T ss_pred             CCCch
Confidence            77774

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.23  E-value=1.9e-10  Score=76.01  Aligned_cols=114  Identities=30%  Similarity=0.383  Sum_probs=76.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      ++|+++|..|+|||+|+.++....+...+. ++.+                           +........+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997776653332 2222                           222223456778999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      ++.....+++.+  |...+.....    .+.|.++++||.|+.+.  .....+...         .++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k----~dl~~~~~~nk~dl~~~--~~~~~~~~~---------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNK----SDLPILVGGNRDVLEEE--RQVATEEGL---------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCC----CCCcEEEEeechhhHhh--CcCCHHHHH---------HHHHHhCCCcchhh
Confidence            999999888755  6555543221    26789999999998543  222232222         24566778888774

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd01900 YchF YchF subfamily

Probab=99.22  E-value=3.7e-11  Score=89.53  Aligned_cols=81  Identities=20%  Similarity=0.153  Sum_probs=59.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE---------------EEEEEEeCCChhh------
Q 028647           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQER------   69 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~------   69 (206)
                      |+++|.||+|||||+|+|++........+++|.++....+.+.+..               .++.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5899999999999999999987765556676666666666555432               2589999999321      


Q ss_pred             -hccchhhhhccCcEEEEEEECC
Q 028647           70 -FQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        70 -~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                       ........++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1222334567899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=9.4e-10  Score=78.63  Aligned_cols=158  Identities=16%  Similarity=0.220  Sum_probs=90.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (206)
                      .-.|+|+|+|.+|.|||||+|.|+......         ....++........+.-++...+++++||||...       
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            346999999999999999999987543321         1111222223333344466677899999999111       


Q ss_pred             -----------hccch--------hhhh--ccCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           70 -----------FQSLG--------VAFY--RGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        70 -----------~~~~~--------~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                                 +....        +..+  ...|++++.+.++.. ++..+ ..++..+    ..    -+.++-|+.|+
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrL----t~----vvNvvPVIaka  194 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRL----TE----VVNVVPVIAKA  194 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHH----hh----hheeeeeEeec
Confidence                       11111        1111  247889999887752 22222 1222222    21    34678888999


Q ss_pred             CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647          128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA  173 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~  173 (206)
                      |...-+++....+.+++-....+ +.+++--+.+-+.=+..++.-+
T Consensus       195 DtlTleEr~~FkqrI~~el~~~~-i~vYPq~~fded~ed~~lN~kv  239 (336)
T KOG1547|consen  195 DTLTLEERSAFKQRIRKELEKHG-IDVYPQDSFDEDLEDKTLNDKV  239 (336)
T ss_pred             ccccHHHHHHHHHHHHHHHHhcC-cccccccccccchhHHHHHHHH
Confidence            97655556666666666666665 6666655555443334444333

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1e-09  Score=83.62  Aligned_cols=148  Identities=20%  Similarity=0.297  Sum_probs=91.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   69 (206)
                      .-.|+++++|+.|.|||||+|.|+......         ....+.........+.-++..+.++++||||-..       
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            446999999999999999999988764332         1222333444444455567778899999999111       


Q ss_pred             -----------hcc-------chhhhhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           70 -----------FQS-------LGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        70 -----------~~~-------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                                 +..       ..+..+.  ..|++++.+.++...- ..+   -..++..+..    .+.+|-|+.|+|.
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL-~p~---Di~~Mk~l~~----~vNiIPVI~KaD~  170 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGL-KPL---DIEFMKKLSK----KVNLIPVIAKADT  170 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCC-cHh---hHHHHHHHhc----cccccceeecccc
Confidence                       110       1111122  5899999999875311 111   1112222222    6788989999998


Q ss_pred             CCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647          130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ....+.....+.+.+-+...+ ++++.......
T Consensus       171 lT~~El~~~K~~I~~~i~~~n-I~vf~fp~~~~  202 (366)
T KOG2655|consen  171 LTKDELNQFKKRIRQDIEEHN-IKVFDFPTDES  202 (366)
T ss_pred             CCHHHHHHHHHHHHHHHHHcC-cceecCCCCcc
Confidence            876555566666666666665 66666555544

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2e-10  Score=92.50  Aligned_cols=121  Identities=22%  Similarity=0.252  Sum_probs=85.0

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------CCccceeEEEEEE---EeCCeEEEEEE
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------------KATIGADFLTKEV---QFEDRLFTLQI   61 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~i   61 (206)
                      ++......+++++|+-+.|||+|+..|..+.-+...                 +.+.+......++   ...++.+-+++
T Consensus       122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni  201 (971)
T KOG0468|consen  122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI  201 (971)
T ss_pred             ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence            344566799999999999999999998764322111                 1111111111111   23566778999


Q ss_pred             EeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      +|||||-.|.......++.+|++++++|+...-++..-.-.-+.++    .    +.|+++|+||+|..
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~----~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----N----RLPIVVVINKVDRL  262 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----c----cCcEEEEEehhHHH
Confidence            9999999999999999999999999999998766554332222221    1    78999999999963

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.19  E-value=2e-10  Score=82.90  Aligned_cols=173  Identities=15%  Similarity=0.088  Sum_probs=106.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchhhhhccC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~   81 (206)
                      .+|.++|.|.+||||++..+.+.........+++.........+.+  -++++.|.||.-+       -........+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999998765544444444333344444455  4688999999432       233455677889


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCC---------------------------------------------
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD---------------------------------------------  116 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  116 (206)
                      +.+++|+|+..|-+...+.+.-.+=........++                                             
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            99999999988765444433111100000000011                                             


Q ss_pred             -------------CCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH-----Hh
Q 028647          117 -------------NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA-----LK  178 (206)
Q Consensus       117 -------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~-----~~  178 (206)
                                   .+|.+.++||+|-..-+       +..-.   +.....+++||..+.|++++++.+.+.+     +.
T Consensus       218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiE-------ELdii---~~iphavpISA~~~wn~d~lL~~mweyL~LvriYt  287 (358)
T KOG1487|consen  218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIE-------ELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYT  287 (358)
T ss_pred             hhhhhhhhccCceeeeeeeeecccceeeee-------cccee---eeccceeecccccccchHHHHHHHhhcchheEEec
Confidence                         24778888888855421       11111   1123478999999999999999998854     33


Q ss_pred             cCccccccCCccccc
Q 028647          179 SGEEEEIYLPDTIDV  193 (206)
Q Consensus       179 ~~~~~~~~~~~~~~~  193 (206)
                      +++....++..++-.
T Consensus       288 kPKgq~PDy~~pVvL  302 (358)
T KOG1487|consen  288 KPKGQPPDYTSPVVL  302 (358)
T ss_pred             CCCCCCCCCCCCcee
Confidence            444444444444433

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=2.6e-10  Score=86.19  Aligned_cols=117  Identities=16%  Similarity=0.217  Sum_probs=80.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEE------------------------------
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLF------------------------------   57 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------   57 (206)
                      .=|+++|+-+.||||+++.|+...|+. ...+..++++....+.-+....                              
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            447999999999999999999988873 3344445555555554322111                              


Q ss_pred             ---------EEEEEeCCCh-----------hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCC
Q 028647           58 ---------TLQIWDTAGQ-----------ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN  117 (206)
Q Consensus        58 ---------~~~i~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~  117 (206)
                               .+.++||||.           ..|......++..+|.++++||+...+--+.....+..+..+       .
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~-------E  211 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH-------E  211 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC-------c
Confidence                     1799999992           235566778889999999999997654444444444444322       2


Q ss_pred             CcEEEEEeCCCCCCC
Q 028647          118 FPFVVLGNKIDVDGG  132 (206)
Q Consensus       118 ~p~ivv~nK~Dl~~~  132 (206)
                      -.+-||+||+|....
T Consensus       212 dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDT  226 (532)
T ss_pred             ceeEEEeccccccCH
Confidence            357788999998763

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=99.15  E-value=2.9e-10  Score=86.25  Aligned_cols=179  Identities=20%  Similarity=0.201  Sum_probs=107.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEE-----E--------Ee---
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKE-----V--------QF---   52 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~-----~--------~~---   52 (206)
                      ..++|+|+|...+|||||+..|+-+...                  ....+..+.++.-..     +        ..   
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            4789999999999999998776532110                  001111111110000     0        00   


Q ss_pred             ---CCeEEEEEEEeCCChhhhccchhhhhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           53 ---EDRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        53 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                         ++..-.++|+|.+|++.|......-+.  -.|..++++-++...- ....+-+..-       ....+|+++|.+|+
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLA-------LaL~VPVfvVVTKI  283 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLA-------LALHVPVFVVVTKI  283 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhh-------hhhcCcEEEEEEee
Confidence               112234899999999999887665443  3788888887764321 1111111111       11188999999999


Q ss_pred             CCCCCCcccccHHHHHHHHHhcC-------------------------CCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647          128 DVDGGNSRVVSEKKARAWCASKG-------------------------NIPYFETSAKEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      |+++++-.++....+.++.+..+                         -+++|.+|..+|.|+.-|. ..+..+..+.+.
T Consensus       284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk-mFLNlls~R~~~  362 (641)
T KOG0463|consen  284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK-MFLNLLSLRRQL  362 (641)
T ss_pred             ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH-HHHhhcCccccc
Confidence            99987655555555555554421                         1578999999999987554 445555555555


Q ss_pred             ccccCCcccccCC
Q 028647          183 EEIYLPDTIDVGN  195 (206)
Q Consensus       183 ~~~~~~~~~~~~~  195 (206)
                      .+. .|+-|++.+
T Consensus       363 ~E~-~PAeFQIDD  374 (641)
T KOG0463|consen  363 NEN-DPAEFQIDD  374 (641)
T ss_pred             ccC-CCcceeecc
Confidence            554 566677654

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.6e-09  Score=86.33  Aligned_cols=143  Identities=19%  Similarity=0.217  Sum_probs=91.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ...+++-++|+||||+|||||++.|+............|    +. .-+.++...++|..+|..   ........+-+|+
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D---l~~miDvaKIaDL  136 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD---LHQMIDVAKIADL  136 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH---HHHHHhHHHhhhe
Confidence            446788899999999999999999986532211111111    11 124556678899999932   3344556678999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccH-H--HHHHHHHhcCCCcEEEeec
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSE-K--KARAWCASKGNIPYFETSA  159 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~S~  159 (206)
                      +++++|.+-...++++     +++.++..+   +.| ++-|++..|+.......... .  .-+.|...++++.+|..|.
T Consensus       137 VlLlIdgnfGfEMETm-----EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsg  208 (1077)
T COG5192         137 VLLLIDGNFGFEMETM-----EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSG  208 (1077)
T ss_pred             eEEEeccccCceehHH-----HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence            9999999876544544     223333344   334 78899999986532111111 1  1234666788899999997


Q ss_pred             cCC
Q 028647          160 KEG  162 (206)
Q Consensus       160 ~~~  162 (206)
                      ..+
T Consensus       209 V~n  211 (1077)
T COG5192         209 VEN  211 (1077)
T ss_pred             ccc
Confidence            653

>cd01855 YqeH YqeH

Probab=99.09  E-value=6.5e-10  Score=79.27  Aligned_cols=95  Identities=25%  Similarity=0.282  Sum_probs=65.2

Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH---
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC---  146 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---  146 (206)
                      +...+..+++.+|++++|+|+.++..     .|...+....     .+.|+++|+||+|+....   ...+....+.   
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-----~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~~~~   90 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-----GNNPVILVGNKIDLLPKD---KNLVRIKNWLRAK   90 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-----CCCcEEEEEEchhcCCCC---CCHHHHHHHHHHH
Confidence            56778888899999999999987542     1112221111     167999999999997532   2222233332   


Q ss_pred             --HhcC--CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          147 --ASKG--NIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       147 --~~~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                        ...+  ...++.+||+++.|++++++.|.+.+.
T Consensus        91 ~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          91 AAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence              2222  236899999999999999999998874

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.1e-09  Score=83.05  Aligned_cols=156  Identities=19%  Similarity=0.271  Sum_probs=96.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCccce--eEEEEEEEeCC------------------
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------KATIGA--DFLTKEVQFED------------------   54 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~------------~~~~~~--~~~~~~~~~~~------------------   54 (206)
                      -.++++|+|...+|||||+..|..+......            +-..+.  .+....+-+++                  
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            4689999999999999999988764322110            000110  00000011111                  


Q ss_pred             -eEEEEEEEeCCChhhhccchhhhhcc--CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           55 -RLFTLQIWDTAGQERFQSLGVAFYRG--ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        55 -~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                       ..-.++|+|.+|+..|.....+.+..  .|.+++|++++....+..-..+ ..+ ..+      ++|++|+.+|+|+..
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHL-gl~-~AL------~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHL-GLI-AAL------NIPFFVLVTKMDLVD  317 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHH-HHH-HHh------CCCeEEEEEeecccc
Confidence             11237999999999999888777654  7999999999876655443221 111 111      899999999999987


Q ss_pred             CCcccccHHHHHHHH----------------------Hh---cCCCcEEEeeccCCCCHHHHHH
Q 028647          132 GNSRVVSEKKARAWC----------------------AS---KGNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       132 ~~~~~~~~~~~~~~~----------------------~~---~~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      ........+++..+.                      ++   -+..|++.+|+..|+|++-+..
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            532222222222222                      11   1236899999999999875443

>cd01859 MJ1464 MJ1464

Probab=99.07  E-value=1.1e-09  Score=75.61  Aligned_cols=96  Identities=20%  Similarity=0.157  Sum_probs=64.8

Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK  149 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (206)
                      |..+.++.++++|++++|+|+.++...... .+...+ .   .   .+.|+++|+||+|+.+..  .  .+....+....
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~-~---~---~~~p~iiv~NK~Dl~~~~--~--~~~~~~~~~~~   69 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV-L---E---LGKKLLIVLNKADLVPKE--V--LEKWKSIKESE   69 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH-H---h---CCCcEEEEEEhHHhCCHH--H--HHHHHHHHHhC
Confidence            456677888889999999999876432221 111111 1   1   167999999999986431  1  11222233333


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          150 GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      + .+++.+|++++.|++++++.+.+.+..
T Consensus        70 ~-~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          70 G-IPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             C-CcEEEEEccccccHHHHHHHHHHHHhh
Confidence            3 679999999999999999999988753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.97  E-value=3.6e-09  Score=81.77  Aligned_cols=89  Identities=17%  Similarity=0.133  Sum_probs=66.0

Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .+.++|.+++|++.....++..+..|+.....       .++|.++|+||+|+........ .+.........+ .+++.
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g-~~v~~  187 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIG-YRVLM  187 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCC-CeEEE
Confidence            45789999999999888888888888764431       1789999999999976421111 222223334455 78999


Q ss_pred             eeccCCCCHHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~  174 (206)
                      +|+.++.|++++++.|..
T Consensus       188 vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        188 VSSHTGEGLEELEAALTG  205 (347)
T ss_pred             EeCCCCcCHHHHHHHHhh
Confidence            999999999999998865

>PRK12289 GTPase RsgA; Reviewed

Probab=98.97  E-value=6.7e-09  Score=80.33  Aligned_cols=91  Identities=16%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             cchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG  150 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      .+....+.++|.+++|+|+.++. ....+..|+.....       .++|+++|+||+||....  .  .+...+....++
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~~--~--~~~~~~~~~~~g  149 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSPT--E--QQQWQDRLQQWG  149 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCChH--H--HHHHHHHHHhcC
Confidence            34455688999999999998775 33445566554421       178999999999997431  1  122233334555


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHH
Q 028647          151 NIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       151 ~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                       ..++.+|+.++.|+++|++.+..
T Consensus       150 -~~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        150 -YQPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             -CeEEEEEcCCCCCHHHHhhhhcc
Confidence             68999999999999999988864

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.95  E-value=5.5e-09  Score=79.10  Aligned_cols=89  Identities=18%  Similarity=0.125  Sum_probs=66.1

Q ss_pred             hhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCC
Q 028647           74 GVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      .+..+.++|.+++|+|+.++. ++..+.+|+..+...       ++|+++|+||+|+.+.  ..  ......+....+ .
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-------~ip~iIVlNK~DL~~~--~~--~~~~~~~~~~~g-~  139 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-------GIEPVIVLTKADLLDD--EE--EELELVEALALG-Y  139 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEEHHHCCCh--HH--HHHHHHHHHhCC-C
Confidence            345578999999999999887 777777777655421       7899999999999754  11  112223333444 7


Q ss_pred             cEEEeeccCCCCHHHHHHHHHH
Q 028647          153 PYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                      +++.+|+.++.|+++++..|..
T Consensus       140 ~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         140 PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             eEEEEECCCCccHHHHHhhhcc
Confidence            8999999999999999887763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.93  E-value=6.3e-09  Score=79.20  Aligned_cols=88  Identities=22%  Similarity=0.191  Sum_probs=63.0

Q ss_pred             hhhhccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      +..+.++|.+++|+|+.++..... +..|+..+..  .     ++|+++|+||+|+.+.  .. ..+...+.....+ .+
T Consensus        75 q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~-----~ip~iIVlNK~DL~~~--~~-~~~~~~~~~~~~g-~~  143 (298)
T PRK00098         75 KLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--N-----GIKPIIVLNKIDLLDD--LE-EARELLALYRAIG-YD  143 (298)
T ss_pred             cceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--C-----CCCEEEEEEhHHcCCC--HH-HHHHHHHHHHHCC-Ce
Confidence            334689999999999988765444 3566554432  1     7899999999999643  22 2233344445555 78


Q ss_pred             EEEeeccCCCCHHHHHHHHH
Q 028647          154 YFETSAKEGINVEEAFQCIA  173 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~  173 (206)
                      ++++|++++.|++++++.+.
T Consensus       144 v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        144 VLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             EEEEeCCCCccHHHHHhhcc
Confidence            99999999999999988763

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.92  E-value=2.2e-09  Score=80.39  Aligned_cols=90  Identities=23%  Similarity=0.206  Sum_probs=68.1

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC---------------eEEEEEEEeCCC
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAG   66 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g   66 (206)
                      ..+..+.++++++|.|++|||||+|.|++......-.|..|.++....+.+..               ....++++|++|
T Consensus        14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG   93 (391)
T KOG1491|consen   14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG   93 (391)
T ss_pred             ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence            34556788999999999999999999999887777777777777666654322               234689999998


Q ss_pred             -------hhhhccchhhhhccCcEEEEEEECC
Q 028647           67 -------QERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        67 -------~~~~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                             .....+.....++.+|+++.|+++.
T Consensus        94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence                   2233444556678899999999865

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=1.1e-08  Score=73.34  Aligned_cols=173  Identities=17%  Similarity=0.250  Sum_probs=101.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc---hhhhhccCcEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---GVAFYRGADCCV   85 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~i   85 (206)
                      .+|+++|...+||||+-..... +..+...-....+.....-.+.+.-+.+.+||.|||-.+..-   ....++.+.+++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeee-ccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            4599999999999997544333 222221111111111111223444467899999998655443   345678899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcC----CCcEEEe
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKG----NIPYFET  157 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~  157 (206)
                      +|+|+.+. -.+.+..+...+-+. - .-.+++.+=|.+.|.|-..++.+.....++.+-.+    ..+    .+.+.-+
T Consensus       107 fvIDaQdd-y~eala~L~~~v~ra-y-kvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  107 FVIDAQDD-YMEALARLHMTVERA-Y-KVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             EEEechHH-HHHHHHHHHHHhhhe-e-ecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            99999752 223333332222222 2 22337888899999997665544443333332221    111    1445555


Q ss_pred             eccCCCCHHHHHHHHHHHHHhcCcccccc
Q 028647          158 SAKEGINVEEAFQCIAKNALKSGEEEEIY  186 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~~~~~~~~~  186 (206)
                      |-. ...|-+.|..+++.+..+.|.-+..
T Consensus       184 SIy-DHSIfEAFSkvVQkLipqLptLEnl  211 (347)
T KOG3887|consen  184 SIY-DHSIFEAFSKVVQKLIPQLPTLENL  211 (347)
T ss_pred             eec-chHHHHHHHHHHHHHhhhchhHHHH
Confidence            544 4568899999999988877766654

>TIGR00092 GTP-binding protein YchF

Probab=98.90  E-value=8.4e-09  Score=79.63  Aligned_cols=83  Identities=22%  Similarity=0.056  Sum_probs=62.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCCChhh---
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER---   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~---   69 (206)
                      ++++++|.|++|||||++.|++... .....+..|..+....+.+.+.               ...+.+.|.||.-.   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 5444566666666666665542               13578999999322   


Q ss_pred             ----hccchhhhhccCcEEEEEEECC
Q 028647           70 ----FQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        70 ----~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                          ........++.+|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                3334556678999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.89  E-value=8.7e-09  Score=75.31  Aligned_cols=158  Identities=16%  Similarity=0.160  Sum_probs=93.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-ccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccc
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL   73 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   73 (206)
                      +.....+++.|.+|+|||+|++.++.......... ..+.+.....+.+..   .+.++|.||          ..++...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            35568999999999999999999987554322222 333333233333333   457889999          2234444


Q ss_pred             hhhhhcc---CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc--cccHHHHHHHH
Q 028647           74 GVAFYRG---ADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--VVSEKKARAWC  146 (206)
Q Consensus        74 ~~~~~~~---~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~  146 (206)
                      ...++.+   .-.+++.+|++-+.  .-.....|+.+-          ++|+.+|+||+|......+  ......+....
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~----------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f  279 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN----------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF  279 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc----------CCCeEEeeehhhhhhhccccccCccccceeeh
Confidence            4444432   34556667776432  112234555544          8999999999998654221  11111111111


Q ss_pred             Hhc------CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          147 ASK------GNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       147 ~~~------~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      ..+      ...+.+.+|+.++.|++.|+-.+.+.
T Consensus       280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             hhccccceeccCCceeeecccccCceeeeeehhhh
Confidence            111      12456789999999999988777654

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.86  E-value=1.3e-08  Score=80.39  Aligned_cols=119  Identities=15%  Similarity=0.167  Sum_probs=75.4

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      ..+.++|++|+..-+..|.+++.+++++|||+++++-+       ....+.+-+..+...+......+.|++|++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            56799999999989999999999999999999987421       11223333333444444444448899999999997


Q ss_pred             CCC----Cc-----------c-cccHHHHHHHHHh--------c---CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          130 DGG----NS-----------R-VVSEKKARAWCAS--------K---GNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       130 ~~~----~~-----------~-~~~~~~~~~~~~~--------~---~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      ...    ..           . ....+.+..+...        .   ..+.+..++|.+..+++.+|+.+.+-
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            321    10           0 0223334433321        1   11245678888888888888877654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.86  E-value=7.3e-09  Score=70.25  Aligned_cols=54  Identities=30%  Similarity=0.366  Sum_probs=37.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      +++++|.+|+|||||+|++.+....... ...+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            7999999999999999999987654221 1222333344444544   4689999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.1e-07  Score=77.40  Aligned_cols=146  Identities=23%  Similarity=0.270  Sum_probs=85.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE----------------------------------------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF----------------------------------------   45 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~----------------------------------------   45 (206)
                      +..++|++.|..++||||++|.++-.+..+......+.-+                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4578999999999999999999876443322111111000                                        


Q ss_pred             ---EEEEEEeCCeE-----EEEEEEeCCC---hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 028647           46 ---LTKEVQFEDRL-----FTLQIWDTAG---QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD  114 (206)
Q Consensus        46 ---~~~~~~~~~~~-----~~~~i~D~~g---~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  114 (206)
                         ....+-+.+..     -.+.++|.||   ..+..+....+...+|++|+|.++.+..+... .    +++...... 
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k----~Ff~~vs~~-  260 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-K----QFFHKVSEE-  260 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-H----HHHHHhhcc-
Confidence               00000011110     0267899999   34555666677788999999999987654332 2    333333332 


Q ss_pred             CCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC-------CCcEEEeeccC
Q 028647          115 PDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG-------NIPYFETSAKE  161 (206)
Q Consensus       115 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~S~~~  161 (206)
                        +..++|+-||.|....  .....+++.+-...+.       .-.++++|++.
T Consensus       261 --KpniFIlnnkwDasas--e~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  261 --KPNIFILNNKWDASAS--EPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             --CCcEEEEechhhhhcc--cHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence              3347788889998765  3344444444332222       13478888664

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.84  E-value=2e-08  Score=78.45  Aligned_cols=96  Identities=23%  Similarity=0.267  Sum_probs=67.6

Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH---
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR---  143 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---  143 (206)
                      .+.+..+...+.+.++++++|+|+.+..     ..|...+.....     +.|+++|+||+|+.+..   ...+...   
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k~---~~~~~~~~~l  116 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPKS---VNLSKIKEWM  116 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCCC---CCHHHHHHHH
Confidence            5567777778888999999999997653     223334443332     56999999999997632   2233333   


Q ss_pred             -HHHHhcCC--CcEEEeeccCCCCHHHHHHHHHHH
Q 028647          144 -AWCASKGN--IPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       144 -~~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                       +++...+.  ..++.+||+++.|++++++.|.+.
T Consensus       117 ~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       117 KKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence             33445542  258999999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01858 NGP_1 NGP-1

Probab=98.83  E-value=1.7e-08  Score=69.72  Aligned_cols=55  Identities=20%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      ..++|+++|.||+|||||+|+|.+..... ...++.+  .....+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999865432 2223322  2233333332   256999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.82  E-value=1.4e-08  Score=71.03  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=38.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      ..++++++|.||+|||||+|+|.+.... ....+++|..  ...+..+.   .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcC
Confidence            3589999999999999999999986643 3333443333  33333332   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.80  E-value=4.2e-08  Score=67.76  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=57.6

Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      ..+..+|++++|+|+.++....  ...+...+...    ..+.|+++|+||+|+.+.   ....+....+...++ ...+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~----~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~-~~~~   73 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE----KPHKHLIFVLNKCDLVPT---WVTARWVKILSKEYP-TIAF   73 (157)
T ss_pred             HhhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc----cCCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCc-EEEE
Confidence            4567899999999999864311  11112222111    115799999999999753   111222333333232 3357


Q ss_pred             EeeccCCCCHHHHHHHHHHHH
Q 028647          156 ETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      .+|++.+.|++++++.+.+..
T Consensus        74 ~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          74 HASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EeeccccccHHHHHHHHHHHH
Confidence            899999999999999997754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.80  E-value=3.2e-08  Score=69.35  Aligned_cols=98  Identities=21%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             CCh-hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH
Q 028647           65 AGQ-ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR  143 (206)
Q Consensus        65 ~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  143 (206)
                      ||+ .+........+.++|++++|+|+.++...... .    +.....     +.|+++|+||+|+.+.  ..  .....
T Consensus         3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~-----~k~~ilVlNK~Dl~~~--~~--~~~~~   68 (171)
T cd01856           3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILG-----NKPRIIVLNKADLADP--KK--TKKWL   68 (171)
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhc-----CCCEEEEEehhhcCCh--HH--HHHHH
Confidence            443 23445567778899999999999876442211 1    111111     5699999999999643  11  11121


Q ss_pred             HHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          144 AWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       144 ~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ++..... ..++.+|+.++.|++++.+.+.+.+.
T Consensus        69 ~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          69 KYFESKG-EKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             HHHHhcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            2222322 56899999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=5.2e-08  Score=79.99  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=84.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC------------CC--CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK------------FS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (206)
                      ......+++++.+..-|||||..+|+...            |.  ...+.+.+.+.....++.-.+.+.+.++|+|||-.
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            34567899999999999999999987432            11  23344445555555556655668899999999999


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      |.+......+-+|++++++|+..+-..++..- +.+.+..       +...++|+||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~~v-lrq~~~~-------~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAV-LRQAWIE-------GLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHHHH-HHHHHHc-------cCceEEEEehhhh
Confidence            99999999999999999999986533233211 1111111       6678999999994

>cd01856 YlqF YlqF

Probab=98.73  E-value=4.2e-08  Score=68.76  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ...++++++|.+|+|||||+|++.+..+.. .....+++.....+.++   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            345799999999999999999999876532 22222333334444443   24689999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.72  E-value=1.5e-07  Score=83.58  Aligned_cols=113  Identities=21%  Similarity=0.309  Sum_probs=67.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCC----C--CccceeEEEEEEEeCCeEEEEEEEeCCChh--------hhccchhh
Q 028647           11 VIILGDSGVGKTSLMNQYVNKKFSNQY----K--ATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVA   76 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~   76 (206)
                      .+|+|++|+||||+++.- +-.++...    .  .+.+.+ ....+.+.+..   .++|++|..        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence            489999999999999875 32332111    1  111111 12334455544   489999922        12233444


Q ss_pred             hh---------ccCcEEEEEEECCCh-----hhH----HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           77 FY---------RGADCCVLVYDVNSM-----KSF----DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        77 ~~---------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ++         +-.|++|+++|+.+-     +..    ..+...+.++...+..    ..||.||+||+|+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~----~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA----RFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecchhhcC
Confidence            44         238999999998752     111    2233344445444433    8999999999998865

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.72  E-value=1.1e-07  Score=65.52  Aligned_cols=84  Identities=19%  Similarity=0.090  Sum_probs=54.3

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (206)
                      |++++|+|+.++.+....  ++..  .....   .++|+++|+||+|+.+.   ....+....+.... ...++.+|+.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~~~~-~~~ii~vSa~~   69 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER--VLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLRHSY-PTIPFKISATN   69 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH--HHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHHhhC-CceEEEEeccC
Confidence            789999999887654321  2221  01111   17899999999998643   11111122232233 36789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028647          162 GINVEEAFQCIAKNA  176 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~  176 (206)
                      +.|++++++.+.+..
T Consensus        70 ~~gi~~L~~~i~~~~   84 (155)
T cd01849          70 GQGIEKKESAFTKQT   84 (155)
T ss_pred             CcChhhHHHHHHHHh
Confidence            999999999998764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.71  E-value=3e-06  Score=57.43  Aligned_cols=57  Identities=30%  Similarity=0.390  Sum_probs=39.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (206)
                      +..++|++.|+||+||||++.++...--...   ..-..+...++.-.++..-+.+.|+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            3568999999999999999998875321111   11223445566666777777888877

>cd01855 YqeH YqeH

Probab=98.70  E-value=3.9e-08  Score=70.13  Aligned_cols=54  Identities=20%  Similarity=0.342  Sum_probs=37.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC---------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKF---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      ..+++++|.+|+|||||+|+|.+...         .....++  ++.....+.+..   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG--TTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC--eeeeeEEEecCC---CCEEEeCcC
Confidence            35899999999999999999997542         2223333  334344444443   368999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.68  E-value=5.3e-08  Score=74.84  Aligned_cols=94  Identities=18%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             EEEEEEeCCChhhhcc----chhhhh--ccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      +.+.++||+|......    ......  .+.|.+++|+|+.... ..+.+    ..+....      + .--+++||.|.
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~------~-~~giIlTKlD~  291 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV------G-IDGVILTKVDA  291 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC------C-CCEEEEeeecC
Confidence            4578999999543222    222222  3578999999997542 22222    2222111      1 34788999997


Q ss_pred             CCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647          130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      .....      .+..+....+ .|+.+++  .|++++++..
T Consensus       292 ~~~~G------~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        292 DAKGG------AALSIAYVIG-KPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCCcc------HHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence            65322      1222223334 7888887  7888887654

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.68  E-value=6.5e-07  Score=71.53  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=64.7

Q ss_pred             EEEEEeCCCh-------------hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 028647           58 TLQIWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG  124 (206)
Q Consensus        58 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  124 (206)
                      ...+.|.||.             +...++..+++.+.+++|+|+--..   .+.-......+...+.+.   +...|+|+
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~---GrRTIfVL  486 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPH---GRRTIFVL  486 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCC---CCeeEEEE
Confidence            3678999992             2344566788899999999983221   122222333344444444   77899999


Q ss_pred             eCCCCCCCCcccccHHHHHHHHHhc--C--CCcEEEeecc---CCCCHHHHHHHHHH
Q 028647          125 NKIDVDGGNSRVVSEKKARAWCASK--G--NIPYFETSAK---EGINVEEAFQCIAK  174 (206)
Q Consensus       125 nK~Dl~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~S~~---~~~~i~~l~~~l~~  174 (206)
                      +|.|+++.  ...+...++++....  +  +..|+.+-.-   ..+.|+.+.++=.+
T Consensus       487 TKVDlAEk--nlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~  541 (980)
T KOG0447|consen  487 TKVDLAEK--NVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEEE  541 (980)
T ss_pred             eecchhhh--ccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHHH
Confidence            99999876  456677777765431  1  2234443322   23356655554433

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.68  E-value=7.6e-08  Score=72.57  Aligned_cols=57  Identities=25%  Similarity=0.432  Sum_probs=39.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ...++++|+|.||+|||||+|+|.+..... ...+++|  .....+.+..   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC---CEEEEECCCc
Confidence            346899999999999999999999766432 2233333  3333444433   3689999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.67  E-value=6e-08  Score=74.24  Aligned_cols=145  Identities=19%  Similarity=0.231  Sum_probs=77.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC----------CCCCC-----------ccceeEEEEEEE-------------e
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS----------NQYKA-----------TIGADFLTKEVQ-------------F   52 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~----------~~~~~-----------~~~~~~~~~~~~-------------~   52 (206)
                      .+-.++++|++|+||||++..|...-..          +.+..           ..+..+......             .
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999887531100          00000           001111111000             0


Q ss_pred             CCeEEEEEEEeCCChhhhccc----hhhhh--------ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE
Q 028647           53 EDRLFTLQIWDTAGQERFQSL----GVAFY--------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF  120 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~  120 (206)
                      ....+.+.++||||.......    ...+.        ...+..++|+|++...  +.+.+ ...+....       -+.
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~-------~~~  262 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV-------GLT  262 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC-------CCC
Confidence            112356889999995432221    11111        2467889999998532  22222 22222211       145


Q ss_pred             EEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647          121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       121 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      -+|+||.|-...      .-.+..+....+ .|+.+++  .|++++++..
T Consensus       263 giIlTKlD~t~~------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        263 GIILTKLDGTAK------GGVVFAIADELG-IPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             EEEEECCCCCCC------ccHHHHHHHHHC-CCEEEEe--CCCChhhCcc
Confidence            789999995432      222333344454 8888888  7777877643

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=6.3e-08  Score=77.79  Aligned_cols=119  Identities=23%  Similarity=0.245  Sum_probs=81.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-----C-----------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-----N-----------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (206)
                      .+..+|.++-+-.+||||+-++.+.....     .           ..+...+.+.......+.++.+.+.++|||||-.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            45678999999999999999886542110     0           0111123344444444455568899999999999


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |.-.....++-.|+.++|+++...-.-+...-|.+ +.+.       ++|.|..+||+|....
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry-------~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY-------NVPRICFINKMDRMGA  171 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc-------CCCeEEEEehhhhcCC
Confidence            99999999999999999999876432232222222 2111       8899999999998654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.66  E-value=1.2e-07  Score=71.90  Aligned_cols=57  Identities=23%  Similarity=0.451  Sum_probs=40.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ...++++++|.||+|||||+|+|.+.... ....++.|..  ...+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence            35689999999999999999999987653 2333333333  33344433   4679999995

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.66  E-value=1.7e-07  Score=70.68  Aligned_cols=101  Identities=22%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             CCChh-hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH
Q 028647           64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA  142 (206)
Q Consensus        64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  142 (206)
                      .|||. .........+..+|++++|+|+..+.+....  .+..+   ..     +.|+++|+||+|+.+.   .. .+..
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~---l~-----~kp~IiVlNK~DL~~~---~~-~~~~   69 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEI---RG-----NKPRLIVLNKADLADP---AV-TKQW   69 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHH---HC-----CCCEEEEEEccccCCH---HH-HHHH
Confidence            46653 3345567778899999999999876543221  11112   11     5799999999998642   11 1222


Q ss_pred             HHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          143 RAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       143 ~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      .++....+ .+++.+|++++.|++++++.+.+.+...
T Consensus        70 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        70 LKYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            22223333 6789999999999999999998887543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.65  E-value=7e-08  Score=74.15  Aligned_cols=58  Identities=24%  Similarity=0.422  Sum_probs=42.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ...++++|+|-||+|||||||+|.+.... ...+..|.+.....+..+..   +.++||||.
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            34588999999999999999999988763 22333355555555555554   679999994

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.65  E-value=3.3e-07  Score=66.96  Aligned_cols=89  Identities=13%  Similarity=0.129  Sum_probs=55.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC-CccceeEEEEEEEeC-CeEEEEEEEeCCChhhh------ccc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERF------QSL   73 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~------~~~   73 (206)
                      ...+...|.|+|++++|||||+|.|++.  .+..... ...|..+........ +....+.++||+|....      ...
T Consensus         3 ~~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           3 AGFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence            3456788999999999999999999988  5543222 122222222222221 13357899999994432      222


Q ss_pred             hhhhhcc--CcEEEEEEECCC
Q 028647           74 GVAFYRG--ADCCVLVYDVNS   92 (206)
Q Consensus        74 ~~~~~~~--~d~~i~v~d~~~   92 (206)
                      ....+..  ++++|+..+...
T Consensus        83 ~~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCcc
Confidence            2333334  888888887764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.63  E-value=5.3e-08  Score=66.69  Aligned_cols=59  Identities=27%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (206)
                      -.++++|++|||||||+|.|......      .....+..++.....+.+.+..   .++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence            36799999999999999999976321      1111111122223334443433   58999995544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.62  E-value=1e-07  Score=65.65  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      ....+++++|.+|+|||||+|.+.+... .....+.++.....  ....   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence            3468899999999999999999998653 23334444444433  2232   2478999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.62  E-value=3.2e-07  Score=63.37  Aligned_cols=21  Identities=33%  Similarity=0.631  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +.++|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999998765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd01859 MJ1464 MJ1464

Probab=98.62  E-value=1.7e-07  Score=64.68  Aligned_cols=56  Identities=23%  Similarity=0.283  Sum_probs=37.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      ...+++++|.+|+||||++++|.+.... ...++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            3578899999999999999999975532 2233434333322233333   478999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.61  E-value=1.1e-06  Score=65.90  Aligned_cols=95  Identities=15%  Similarity=0.102  Sum_probs=54.3

Q ss_pred             EEEEEEeCCChhhhccchh----h---hh-----ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 028647           57 FTLQIWDTAGQERFQSLGV----A---FY-----RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG  124 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  124 (206)
                      +.+.++||||.........    .   ..     ..+|.+++|+|++...  +.+. ....+....      + +.-+|+
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~------~-~~g~Il  224 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV------G-LTGIIL  224 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC------C-CCEEEE
Confidence            5688999999553322211    1   11     1389999999997532  2222 222232211      1 357889


Q ss_pred             eCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647          125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       125 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      ||.|-...      .-....+....+ .|+.+++  .|++++++..
T Consensus       225 TKlDe~~~------~G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       225 TKLDGTAK------GGIILSIAYELK-LPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             EccCCCCC------ccHHHHHHHHHC-cCEEEEe--CCCChHhCcc
Confidence            99996543      222233333444 7888888  7777776643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.60  E-value=5.5e-06  Score=64.62  Aligned_cols=176  Identities=14%  Similarity=0.168  Sum_probs=96.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCCCCccceeEEE----------EEEEe-CCeEEEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKF--------------SNQYKATIGADFLT----------KEVQF-EDRLFTLQI   61 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~i   61 (206)
                      -.+=|+|+||..+|||||+.||...-+              ..-+.+..|.++-+          ..+.+ ++..+++++
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            346689999999999999999964211              11122222222211          12233 567788999


Q ss_pred             EeCCCh-------------h-----hhccc-----------hhhhhc--cCcEEEEEEECCC----hhhHHH-HHHHHHH
Q 028647           62 WDTAGQ-------------E-----RFQSL-----------GVAFYR--GADCCVLVYDVNS----MKSFDN-LNNWREE  105 (206)
Q Consensus        62 ~D~~g~-------------~-----~~~~~-----------~~~~~~--~~d~~i~v~d~~~----~~s~~~-~~~~~~~  105 (206)
                      +|+.|-             +     .|...           ++..+.  ..=++++.-|.+=    ++.+.. -.+...+
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            999880             0     01100           001111  1225555556541    222222 2333444


Q ss_pred             HHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC--CHHHHHHHHHHHHHhcCccc
Q 028647          106 FLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI--NVEEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       106 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~--~i~~l~~~l~~~~~~~~~~~  183 (206)
                      +...       ++|++|++|-.+=.    .....+...++...|+ ++++++++..-.  .+..+++.    ++-..|..
T Consensus       176 Lk~i-------gKPFvillNs~~P~----s~et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~----vLyEFPV~  239 (492)
T PF09547_consen  176 LKEI-------GKPFVILLNSTKPY----SEETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEE----VLYEFPVS  239 (492)
T ss_pred             HHHh-------CCCEEEEEeCCCCC----CHHHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHH----HHhcCCce
Confidence            4333       88999999987732    3456777777888887 999999887532  34444333    33333444


Q ss_pred             cc--cCCcccccCCCCC
Q 028647          184 EI--YLPDTIDVGNSSQ  198 (206)
Q Consensus       184 ~~--~~~~~~~~~~~~~  198 (206)
                      +.  .+|.++..-...+
T Consensus       240 Ei~~~lP~Wve~L~~~H  256 (492)
T PF09547_consen  240 EININLPKWVEMLEDDH  256 (492)
T ss_pred             EEEeecchHHhhcCCCc
Confidence            43  4666666544443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.56  E-value=3.3e-07  Score=62.15  Aligned_cols=78  Identities=19%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             hhhhhccCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN  151 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ....+..+|++++|+|+.++.+..  .+..++..    ..    .++|+++|+||+|+.+.  .  ......++....+ 
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~----~~----~~k~~iivlNK~DL~~~--~--~~~~~~~~~~~~~-   71 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKE----VD----PRKKNILLLNKADLLTE--E--QRKAWAEYFKKEG-   71 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh----cc----CCCcEEEEEechhcCCH--H--HHHHHHHHHHhcC-
Confidence            345678899999999998876533  22333222    11    16799999999998653  1  1223344444444 


Q ss_pred             CcEEEeeccCCCC
Q 028647          152 IPYFETSAKEGIN  164 (206)
Q Consensus       152 ~~~~~~S~~~~~~  164 (206)
                      ..++++|+.++.+
T Consensus        72 ~~ii~iSa~~~~~   84 (141)
T cd01857          72 IVVVFFSALKENA   84 (141)
T ss_pred             CeEEEEEecCCCc
Confidence            6799999998763

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.52  E-value=8.7e-07  Score=69.12  Aligned_cols=85  Identities=14%  Similarity=0.114  Sum_probs=58.4

Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .+.++|.+++|+++..+.....+..++......       +++.++|+||+||.+.  ..   +....+.....+.+++.
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~-------~i~piIVLNK~DL~~~--~~---~~~~~~~~~~~g~~Vi~  176 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES-------GAEPVIVLTKADLCED--AE---EKIAEVEALAPGVPVLA  176 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc-------CCCEEEEEEChhcCCC--HH---HHHHHHHHhCCCCcEEE
Confidence            468899999999997544444455554443322       7788999999999754  11   12222222233478999


Q ss_pred             eeccCCCCHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIA  173 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~  173 (206)
                      +|+.++.|+++|..++.
T Consensus       177 vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        177 VSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EECCCCccHHHHHHHhh
Confidence            99999999999888874

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=5.7e-08  Score=74.97  Aligned_cols=119  Identities=21%  Similarity=0.263  Sum_probs=88.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--------CC--------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKF--------SN--------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (206)
                      +..+|.++.+-.+||||...+++.-.-        ..        ..+...|.++....+.++++...+.++||||+-.|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            457899999999999999998764211        00        01122356677777888888899999999999999


Q ss_pred             ccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                      .-.....++-.|+++.|||++..-..+.+--|.+     ....   ++|-+..+||+|...++
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvwrq-----adk~---~ip~~~finkmdk~~an  170 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKF---KIPAHCFINKMDKLAAN  170 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----cccc---CCchhhhhhhhhhhhhh
Confidence            9999999999999999999986544344433332     2222   78999999999987653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.50  E-value=6.8e-07  Score=67.80  Aligned_cols=101  Identities=21%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             CCChh-hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH
Q 028647           64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA  142 (206)
Q Consensus        64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  142 (206)
                      .|||. .........+..+|++++|+|+..+.+.+.  ..+..+.   .     +.|+++|+||+|+.+.   .. .+..
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-----~kp~iiVlNK~DL~~~---~~-~~~~   72 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-----NKPRLLILNKSDLADP---EV-TKKW   72 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-----CCCEEEEEEchhcCCH---HH-HHHH
Confidence            56754 334456677889999999999987654322  1112221   1     5799999999998642   11 1222


Q ss_pred             HHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          143 RAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       143 ~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      .++....+ .+++.+|+.++.|++++++.+.+.+...
T Consensus        73 ~~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         73 IEYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            22223333 6789999999999999999988877553

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.50  E-value=2.5e-07  Score=66.13  Aligned_cols=123  Identities=12%  Similarity=0.118  Sum_probs=79.5

Q ss_pred             eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 028647           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNFPFVVLG  124 (206)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  124 (206)
                      ..+.+.+.|.+|+..-...|.+.+.+.-.+++++.++.          ..-++....+...++.   .....+.++|+.+
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~---yPWF~nssVIlFL  273 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIIT---YPWFQNSSVILFL  273 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhc---cccccCCceEEEe
Confidence            33457899999998888899999988877777766553          1122223333333333   3333478999999


Q ss_pred             eCCCCCCCC--------------cccccHHHHHHHHHh----c-C----CCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          125 NKIDVDGGN--------------SRVVSEKKARAWCAS----K-G----NIPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       125 nK~Dl~~~~--------------~~~~~~~~~~~~~~~----~-~----~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ||.|+.++.              ....+.+.+++|...    . +    .+.-.++-|.+.+||+.+|..+.+.++...
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            999986641              123344455554432    1 1    122356778899999999998888877654

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.50  E-value=1.5e-06  Score=68.80  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=61.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc------CCCC----CCCCC-----------ccceeEEEEEEEeC------------
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN------KKFS----NQYKA-----------TIGADFLTKEVQFE------------   53 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~------~~~~----~~~~~-----------~~~~~~~~~~~~~~------------   53 (206)
                      ++..|+++|++||||||++.+|..      .++.    +.+.+           ..+..++......+            
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            357899999999999999998852      1110    11110           01111111000001            


Q ss_pred             -CeEEEEEEEeCCChhhhccc----hhhh--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647           54 -DRLFTLQIWDTAGQERFQSL----GVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (206)
Q Consensus        54 -~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  126 (206)
                       ...+.+.|+||+|.......    ....  ....+-+++|+|+.-.....   .....+...       --+.-+|+||
T Consensus       179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~-------~~~~g~IlTK  248 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS-------VDVGSVIITK  248 (429)
T ss_pred             HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc-------cCCcEEEEEC
Confidence             12357889999995433222    1221  23478899999987543221   222222211       1256788999


Q ss_pred             CCCCC
Q 028647          127 IDVDG  131 (206)
Q Consensus       127 ~Dl~~  131 (206)
                      .|-..
T Consensus       249 lD~~a  253 (429)
T TIGR01425       249 LDGHA  253 (429)
T ss_pred             ccCCC
Confidence            99654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.47  E-value=6.1e-07  Score=65.90  Aligned_cols=119  Identities=19%  Similarity=0.303  Sum_probs=73.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEEeCCeEEEEEEEeCCCh-------hhhc---
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ERFQ---   71 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~~---   71 (206)
                      .-.|+|+-+|..|.|||||+..|++-.+....    .++.......+...-.|..+.+++.||.|-       +.+.   
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            34699999999999999999999987765433    333343444444445677889999999981       1111   


Q ss_pred             --------cchhh---------hh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           72 --------SLGVA---------FY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        72 --------~~~~~---------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                              .....         .+  ...|+.++.+.++. +++..+.-   ..+..+..    ++.+|-|+.|.|....
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDL---vtmk~Lds----kVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDL---VTMKKLDS----KVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHH---HHHHHHhh----hhhhHHHHHHhhhhhH
Confidence                    11110         11  34788999998874 23333221   11122221    5677888889997654

>PRK13796 GTPase YqeH; Provisional

Probab=98.45  E-value=1.7e-06  Score=67.77  Aligned_cols=96  Identities=22%  Similarity=0.250  Sum_probs=59.5

Q ss_pred             hhccchhhhhccCc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-ccccHHHHHHHH
Q 028647           69 RFQSLGVAFYRGAD-CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVSEKKARAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~  146 (206)
                      .+.... ..+...+ .+++|+|+.+..     ..|...+.....     +.|+++|+||+|+.+... .....+....+.
T Consensus        58 ~~~~~l-~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~  126 (365)
T PRK13796         58 DFLKLL-NGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA  126 (365)
T ss_pred             HHHHHH-HhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-----CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence            344433 3344455 999999998743     223333333322     569999999999975321 111122223334


Q ss_pred             HhcCC--CcEEEeeccCCCCHHHHHHHHHHH
Q 028647          147 ASKGN--IPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       147 ~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      ...+.  ..++.+||+++.|++++++.|.+.
T Consensus       127 k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        127 KELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            44441  268999999999999999999765

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=1.2e-06  Score=69.34  Aligned_cols=121  Identities=19%  Similarity=0.268  Sum_probs=79.5

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCC------------CCC--CCCCccceeEEEEEEE----------------
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKK------------FSN--QYKATIGADFLTKEVQ----------------   51 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~------------~~~--~~~~~~~~~~~~~~~~----------------   51 (206)
                      +.+..+..++-|+.+..-|||||...|..+.            |..  ..+...+.++....++                
T Consensus        13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~   92 (842)
T KOG0469|consen   13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE   92 (842)
T ss_pred             hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence            3466778899999999999999999987421            111  1111222233222222                


Q ss_pred             eCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      -++..+.+.++|.||+-.|.+....+++-.|+.++|+|.-+.--.++---+.+.+-.        .+.-++++||+|.+
T Consensus        93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E--------RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--------RIKPVLVMNKMDRA  163 (842)
T ss_pred             CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh--------hccceEEeehhhHH
Confidence            244567899999999999999999999999999999998764322221111122211        34446789999964

>PRK12288 GTPase RsgA; Reviewed

Probab=98.42  E-value=7.3e-07  Score=69.14  Aligned_cols=58  Identities=24%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647           11 VIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      ++++|.+|+|||||+|+|.......      ....+.-++....-+.+.+..   .++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            6899999999999999999754321      111111112222223333222   489999976554

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=7e-07  Score=68.71  Aligned_cols=160  Identities=18%  Similarity=0.197  Sum_probs=96.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC----------C---------------------CCCCCCccceeEEEEEEEeC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK----------F---------------------SNQYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~----------~---------------------~~~~~~~~~~~~~~~~~~~~   53 (206)
                      .+.++++.++|+..+||||+-..+....          |                     ........+.......+...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            4678999999999999999877654210          0                     00111111111111222222


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh---hHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWRE-EFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                        .-.+++.|.||+..|-..+..-+.++|..++|+++...+   .|+.-.+... .++.....    ....|+++||+|-
T Consensus       156 --~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g----v~~lVv~vNKMdd  229 (501)
T KOG0459|consen  156 --NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG----VKHLIVLINKMDD  229 (501)
T ss_pred             --ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc----cceEEEEEEeccC
Confidence              245789999999999988888889999999999885422   1222211111 12222111    3458999999996


Q ss_pred             CCCCccc----ccHHHHHHHHHhc-----CCCcEEEeeccCCCCHHHHHH
Q 028647          130 DGGNSRV----VSEKKARAWCASK-----GNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       130 ~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      +..+-..    ...+.+..|....     ....++++|..+|.++.+..+
T Consensus       230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            6433122    2333444444432     346799999999999988664

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=1.7e-06  Score=75.67  Aligned_cols=114  Identities=23%  Similarity=0.265  Sum_probs=64.1

Q ss_pred             EEEcCCCCCHHHHHHHHhcC-CCCCCCCCcc--ceeEEEEEEEeCCeEEEEEEEeCCC----h----hhhccchhhhh--
Q 028647           12 IILGDSGVGKTSLMNQYVNK-KFSNQYKATI--GADFLTKEVQFEDRLFTLQIWDTAG----Q----ERFQSLGVAFY--   78 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g----~----~~~~~~~~~~~--   78 (206)
                      +|||++|+||||++..--.. .+........  +..-..+...+.+..   .++||.|    +    +.-...|..++  
T Consensus       129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~dea---VlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEA---VLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             EEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccce---EEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            79999999999997543221 1111111111  000112233444443   5889999    2    12233444442  


Q ss_pred             -------ccCcEEEEEEECCCh-----hhH----HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           79 -------RGADCCVLVYDVNSM-----KSF----DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        79 -------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                             +-.|++|+.+|+.+-     ...    ..+..-+.++...+..    ..||++++||.|+...
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~----~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA----RLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCceEEEEeccccccc
Confidence                   348999999998751     111    1122334445444443    7899999999999875

>PRK13796 GTPase YqeH; Provisional

Probab=98.37  E-value=7.5e-07  Score=69.77  Aligned_cols=54  Identities=22%  Similarity=0.362  Sum_probs=36.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      .++.|+|.+|+|||||+|+|......      ....|++|  .....+.+++.   ..++||||.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCCC---cEEEECCCc
Confidence            47999999999999999999864311      22333333  33444444443   368999995

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.36  E-value=1e-06  Score=65.26  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|+|||||+|+|....
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            67899999999999999998753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.36  E-value=8.8e-07  Score=66.31  Aligned_cols=59  Identities=24%  Similarity=0.299  Sum_probs=37.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC------CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      ..+++|++|+|||||+|+|....      .......+.-++.....+.+.+..   .++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            46899999999999999998632      122222333233345555564333   389999976544

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.36  E-value=1.2e-06  Score=68.45  Aligned_cols=55  Identities=24%  Similarity=0.362  Sum_probs=37.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (206)
                      .+++++|.+|+|||||+|+|.+...      .....+.+|  .....+.+++.   +.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~~---~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDDG---HSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCCC---CEEEECCCCC
Confidence            5899999999999999999997532      223333333  33344444332   4699999943

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.32  E-value=1.5e-06  Score=67.51  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC-CCCCc-----cceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647           11 VIILGDSGVGKTSLMNQYVNKKFSN-QYKAT-----IGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (206)
                      ++|+|++|+|||||+|.|....... ...+.     ..++.....+...+..   .++||||..
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~  235 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN  235 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence            7999999999999999999654221 11111     1112222333343332   589999964

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.31  E-value=2.7e-05  Score=59.75  Aligned_cols=99  Identities=19%  Similarity=0.138  Sum_probs=53.9

Q ss_pred             EEEEEEeCCChhhhccchhhhh--------ccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           57 FTLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                      +...++++.|...-......+.        -..|+++-|+|+.+-..... ....+..-+         ...-+|++||+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---------a~AD~ivlNK~  155 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---------AFADVIVLNKT  155 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---------HhCcEEEEecc
Confidence            4466788888332222222221        23688999999986432121 222222211         22348999999


Q ss_pred             CCCCCCcccccHHHHHHHHHh-cCCCcEEEeeccCCCCHHHHH
Q 028647          128 DVDGGNSRVVSEKKARAWCAS-KGNIPYFETSAKEGINVEEAF  169 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~  169 (206)
                      |+..+.   . .+..+..... .+.++++.++.. +....+++
T Consensus       156 Dlv~~~---~-l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll  193 (323)
T COG0523         156 DLVDAE---E-LEALEARLRKLNPRARIIETSYG-DVDLAELL  193 (323)
T ss_pred             cCCCHH---H-HHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence            999862   2 4444444444 456788888874 33343333

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.29  E-value=5.4e-07  Score=64.55  Aligned_cols=111  Identities=12%  Similarity=0.040  Sum_probs=61.6

Q ss_pred             EEEEEeCCChhhhcc------chhhhhccCcEEEEEEECCC------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 028647           58 TLQIWDTAGQERFQS------LGVAFYRGADCCVLVYDVNS------MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN  125 (206)
Q Consensus        58 ~~~i~D~~g~~~~~~------~~~~~~~~~d~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  125 (206)
                      ...++|+|||=++..      .....++..+.-+.++.+.|      |..+-.  .++..+...+.-    ..|-+=|+.
T Consensus        98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~m----elphVNvlS  171 (290)
T KOG1533|consen   98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHM----ELPHVNVLS  171 (290)
T ss_pred             cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhh----cccchhhhh
Confidence            467899999644322      22234445676666666554      443322  222222222221    568888999


Q ss_pred             CCCCCCCCc--------------------------c----cccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647          126 KIDVDGGNS--------------------------R----VVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       126 K~Dl~~~~~--------------------------~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                      |+|+.....                          +    ....+.+..+.+.++-+.|...+..+.+.+-++...|-+
T Consensus       172 K~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk  250 (290)
T KOG1533|consen  172 KADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK  250 (290)
T ss_pred             HhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence            999854321                          0    123344555566666566777777776777776666544

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.29  E-value=9.6e-06  Score=58.00  Aligned_cols=85  Identities=14%  Similarity=0.087  Sum_probs=46.1

Q ss_pred             EEEEEEeCCChhhhcc----chhhhh--ccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      +.+.++||+|......    ....+.  ...+-+++|++++.. +..+.+..+    ....      + +--+++||.|-
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~~------~-~~~lIlTKlDe  152 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEAF------G-IDGLILTKLDE  152 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHHS------S-TCEEEEESTTS
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhcc------c-CceEEEEeecC
Confidence            4578999999443322    222222  257889999999854 333323222    2222      1 23567999995


Q ss_pred             CCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647          130 DGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      ...      .-.+..+....+ .|+-.++.
T Consensus       153 t~~------~G~~l~~~~~~~-~Pi~~it~  175 (196)
T PF00448_consen  153 TAR------LGALLSLAYESG-LPISYITT  175 (196)
T ss_dssp             SST------THHHHHHHHHHT-SEEEEEES
T ss_pred             CCC------cccceeHHHHhC-CCeEEEEC
Confidence            443      334444555555 66666653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.28  E-value=4.8e-06  Score=58.00  Aligned_cols=134  Identities=22%  Similarity=0.313  Sum_probs=62.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeC-CCh---------------------
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT-AGQ---------------------   67 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~---------------------   67 (206)
                      +|++.|++|+||||++++++..--..   ...-..++...+.-.+...-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~---~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK---GLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT---CGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc---CCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987532100   11112233334444444455555555 221                     


Q ss_pred             -hhhccchhhh----hccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC-CCCCCCcccccHH
Q 028647           68 -ERFQSLGVAF----YRGADCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI-DVDGGNSRVVSEK  140 (206)
Q Consensus        68 -~~~~~~~~~~----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~  140 (206)
                       +.+.......    +..+|  ++|+|--.+ |.  ....|...+...+..    +.|++.++-+. +.          .
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl--~~~~F~~~v~~~l~s----~~~vi~vv~~~~~~----------~  139 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL--KSPGFREAVEKLLDS----NKPVIGVVHKRSDN----------P  139 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC--C-CHHHHHHHHHHCT----TSEEEEE--SS--S----------C
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh--cCHHHHHHHHHHHcC----CCcEEEEEecCCCc----------H
Confidence             1122211112    23344  777776542 21  112333444444442    67888888766 31          1


Q ss_pred             HHHHHHHhcCCCcEEEeeccCCCCH
Q 028647          141 KARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus       141 ~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      .++++....+ ..++.++..+.+.+
T Consensus       140 ~l~~i~~~~~-~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  140 FLEEIKRRPD-VKIFEVTEENRDAL  163 (168)
T ss_dssp             CHHHHHTTTT-SEEEE--TTTCCCH
T ss_pred             HHHHHHhCCC-cEEEEeChhHHhhH
Confidence            2233434444 77888877766554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.27  E-value=7.4e-06  Score=55.92  Aligned_cols=58  Identities=22%  Similarity=0.207  Sum_probs=36.4

Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                      .+.+.|+||+|..   .....++..+|.++++....-.+... +.+  ..++         ...-++++||+|
T Consensus        91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~-~~k--~~~~---------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQ-AIK--AGIM---------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHH-Hhh--hhHh---------hhcCEEEEeCCC
Confidence            3568899998854   22345888899999999876222211 111  1222         234489999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.25  E-value=2.3e-05  Score=54.96  Aligned_cols=66  Identities=24%  Similarity=0.158  Sum_probs=37.8

Q ss_pred             EEEEEEeCCChhhhc----cchhhhh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           57 FTLQIWDTAGQERFQ----SLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      ..+.++|++|.....    .....+.  ...+.+++|+|+.....   .......+....      + ...+|+||.|..
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~------~-~~~viltk~D~~  152 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL------G-ITGVILTKLDGD  152 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC------C-CCEEEEECCcCC
Confidence            347789999964222    2122222  24899999999875432   223333333222      2 256788999976


Q ss_pred             CC
Q 028647          131 GG  132 (206)
Q Consensus       131 ~~  132 (206)
                      ..
T Consensus       153 ~~  154 (173)
T cd03115         153 AR  154 (173)
T ss_pred             CC
Confidence            54

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.22  E-value=2.7e-05  Score=60.83  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++++|++|+||||++.+|..
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999875

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.21  E-value=5.5e-06  Score=58.42  Aligned_cols=87  Identities=20%  Similarity=0.178  Sum_probs=43.1

Q ss_pred             EEEEEEeCCChhhhccc--hh---hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           57 FTLQIWDTAGQERFQSL--GV---AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~--~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                      ....++.+.|-..-...  ..   ...-..+.++.|+|+.+-.........+...+         ...-++++||+|+.+
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---------~~ADvIvlnK~D~~~  155 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---------AFADVIVLNKIDLVS  155 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---------CT-SEEEEE-GGGHH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---------hhcCEEEEeccccCC
Confidence            44567788873322222  01   11224789999999976433333333332222         223489999999876


Q ss_pred             CCcccccHHHHHHHHHhc-CCCcEE
Q 028647          132 GNSRVVSEKKARAWCASK-GNIPYF  155 (206)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~-~~~~~~  155 (206)
                      ..   ...+..++..+.. +.++++
T Consensus       156 ~~---~~i~~~~~~ir~lnp~a~Iv  177 (178)
T PF02492_consen  156 DE---QKIERVREMIRELNPKAPIV  177 (178)
T ss_dssp             HH-----HHHHHHHHHHH-TTSEEE
T ss_pred             hh---hHHHHHHHHHHHHCCCCEEe
Confidence            42   1224444444433 334443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.20  E-value=1.8e-05  Score=59.36  Aligned_cols=94  Identities=21%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             cchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG  150 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      .+.+-.+.+.|-+++|+.+.+|+ +...+.+++-.....       ++.-+|++||+||........  ++.......++
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~-------gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g  141 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG-------GIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG  141 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc-------CCcEEEEEEccccCcchHHHH--HHHHHHHHhCC
Confidence            33444556688888888888875 444455554443322       677788899999998643333  55666666776


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          151 NIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       151 ~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                       .+++.+|++++++++++.+.+...
T Consensus       142 -y~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         142 -YPVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             -eeEEEecCcCcccHHHHHHHhcCC
Confidence             899999999999999998877554

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.20  E-value=4.9e-05  Score=58.46  Aligned_cols=96  Identities=17%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             EEEEEEeCCChhhhccchhhhhc--------cCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYR--------GADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                      ....++++.|...-......+..        ..+.++.|+|+.+.... +.......++          ...-+||+||+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi----------~~AD~IvlnK~  160 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV----------GYADRILLTKT  160 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH----------HhCCEEEEecc
Confidence            34567888885433333333211        25889999999753221 1111111122          22348999999


Q ss_pred             CCCCCCcccccHHHHHHHHHh-cCCCcEEEeeccCCCCHHHHH
Q 028647          128 DVDGGNSRVVSEKKARAWCAS-KGNIPYFETSAKEGINVEEAF  169 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~  169 (206)
                      |+...  .    +.+.+..+. .+.++++.++-- ......++
T Consensus       161 Dl~~~--~----~~~~~~l~~lnp~a~i~~~~~~-~v~~~~l~  196 (318)
T PRK11537        161 DVAGE--A----EKLRERLARINARAPVYTVVHG-DIDLSLLF  196 (318)
T ss_pred             ccCCH--H----HHHHHHHHHhCCCCEEEEeccC-CCCHHHHh
Confidence            98863  1    344444443 445667665422 23444444

>TIGR00959 ffh signal recognition particle protein

Probab=98.19  E-value=1.1e-05  Score=64.18  Aligned_cols=86  Identities=23%  Similarity=0.125  Sum_probs=47.1

Q ss_pred             EEEEEEeCCChhhhccc----hhh--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           57 FTLQIWDTAGQERFQSL----GVA--FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      +.+.|+||+|.......    ...  ..-..+.+++|+|+...   +........+....      + ..-+|+||.|-.
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v------~-i~giIlTKlD~~  252 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL------G-LTGVVLTKLDGD  252 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC------C-CCEEEEeCccCc
Confidence            45789999995332221    111  12347889999998754   23333334443222      1 236779999953


Q ss_pred             CCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647          131 GGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      ..      .-.+.......+ .|+.+++.
T Consensus       253 ~~------~G~~lsi~~~~~-~PI~fi~~  274 (428)
T TIGR00959       253 AR------GGAALSVRSVTG-KPIKFIGV  274 (428)
T ss_pred             cc------ccHHHHHHHHHC-cCEEEEeC
Confidence            32      112444445554 66666554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.18  E-value=4.9e-06  Score=66.36  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~   29 (206)
                      .+..|+++|++|+||||++..|.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            46789999999999999998875

>PRK10867 signal recognition particle protein; Provisional

Probab=98.16  E-value=1.4e-05  Score=63.65  Aligned_cols=86  Identities=23%  Similarity=0.134  Sum_probs=45.8

Q ss_pred             EEEEEEeCCChhhhcc----chhhh--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           57 FTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      +.+.|+||+|......    ....+  .-..+.+++|+|+...   +........+....      + ..-+|+||.|-.
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~------~-i~giIlTKlD~~  253 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL------G-LTGVILTKLDGD  253 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC------C-CCEEEEeCccCc
Confidence            4588999999432221    11111  1257788999998753   23333333333211      1 235778999953


Q ss_pred             CCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647          131 GGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      ...      -.+.......+ .|+.+++.
T Consensus       254 ~rg------G~alsi~~~~~-~PI~fig~  275 (433)
T PRK10867        254 ARG------GAALSIRAVTG-KPIKFIGT  275 (433)
T ss_pred             ccc------cHHHHHHHHHC-cCEEEEeC
Confidence            321      12334444444 66666554

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.16  E-value=1e-05  Score=59.15  Aligned_cols=75  Identities=13%  Similarity=0.153  Sum_probs=51.3

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      +.++.+|.+|+..-+..|...+....++|+|+..+.-.       +-..+.+-+..+...-+......+.+|+.+||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            55899999999999999999999999999999877411       11222222222222222222336789999999998


Q ss_pred             CC
Q 028647          130 DG  131 (206)
Q Consensus       130 ~~  131 (206)
                      ..
T Consensus       282 la  283 (379)
T KOG0099|consen  282 LA  283 (379)
T ss_pred             HH
Confidence            43

>PRK13695 putative NTPase; Provisional

Probab=98.14  E-value=0.00013  Score=51.25  Aligned_cols=22  Identities=41%  Similarity=0.634  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++|+++|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.14  E-value=7.1e-06  Score=62.26  Aligned_cols=60  Identities=20%  Similarity=0.211  Sum_probs=36.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      -.++++|++|+|||||+|.|.+.......      ..+..++.....+...+.   ..++||||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999875432111      111112222333444322   2489999976543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.10  E-value=7.8e-06  Score=62.38  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.++++|++|+|||||+|.|.+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            358999999999999999998754

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.09  E-value=3e-06  Score=59.86  Aligned_cols=114  Identities=12%  Similarity=0.156  Sum_probs=61.8

Q ss_pred             EEEEeCCChhhhcc---chhhhh---cc---CcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           59 LQIWDTAGQERFQS---LGVAFY---RG---ADCCVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        59 ~~i~D~~g~~~~~~---~~~~~~---~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                      +.++|+|||.+...   .....+   ..   --++++++|..= -++...+...+..+......    .+|-|=|++|+|
T Consensus       100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKMD  175 (273)
T KOG1534|consen  100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKMD  175 (273)
T ss_pred             EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHHH
Confidence            67899999755432   222222   11   224555665532 12222233333333333222    789999999999


Q ss_pred             CCCCCccc---------------------------ccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          129 VDGGNSRV---------------------------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       129 l~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      |.......                           ....-+..+...++-+.|++....+.++++.++..|-..+
T Consensus       176 Llk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  176 LLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             HhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            97641100                           0001111122334446788888888888988888887665

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.08  E-value=6.8e-05  Score=58.75  Aligned_cols=22  Identities=27%  Similarity=0.637  Sum_probs=20.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 028647            8 LLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~   29 (206)
                      +..|+++|+.|+||||++.+|.
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA  262 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMA  262 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHH
Confidence            4689999999999999999985

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.08  E-value=5.9e-06  Score=65.61  Aligned_cols=55  Identities=24%  Similarity=0.324  Sum_probs=41.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      .+.|+++|.||+||||+||.|.+.+.. ...+|.|.+-.-.++.++.   .+-+.|+||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCC
Confidence            699999999999999999999987744 3344455444455555544   356889999

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.08  E-value=2.1e-05  Score=43.70  Aligned_cols=44  Identities=27%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             cCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           80 GADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        80 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                      -.++++|++|++.  +-+.+.-..++.++...+.     +.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence            3789999999986  4466666777888887776     789999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=0.00012  Score=59.45  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.|+|+|+.|+||||++.+|..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999988764

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.01  E-value=0.00012  Score=57.23  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-.|+++||.|+||||-+.+|....
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~  227 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARY  227 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHH
Confidence            5678999999999999998886543

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.99  E-value=6.1e-06  Score=63.55  Aligned_cols=57  Identities=26%  Similarity=0.455  Sum_probs=43.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      +..++++|+|-|++||||+||+|...... ......|.+...+.+..+.   .+.|+|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C-~vg~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKAC-NVGNVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccc-cCCCCccchhhhhheeccC---CceeccCCc
Confidence            56799999999999999999999987653 2233444445556665555   468999999

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=0.00011  Score=58.33  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++++|+.|+||||++.+|..
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.97  E-value=6.3e-05  Score=56.65  Aligned_cols=106  Identities=14%  Similarity=0.260  Sum_probs=64.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC-----------------
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------------   66 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------------   66 (206)
                      +.....+++++|++|.|||+++++|........ ....             ..+.+..+.+|.                 
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            445567899999999999999999997653321 1111             112333444443                 


Q ss_pred             -------hhhhccchhhhhccCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647           67 -------QERFQSLGVAFYRGADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (206)
Q Consensus        67 -------~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  126 (206)
                             ...........++...+-++++|--+.   .+.......+..+....+..   ++|+|.|+++
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccH
Confidence                   111122234567788999999997542   23333444555555444433   8899999876

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=7.4e-05  Score=54.39  Aligned_cols=116  Identities=16%  Similarity=0.304  Sum_probs=71.3

Q ss_pred             EEEEEEcCCCC--CHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEE--EEEEeCCChhhhccchhhhhccCcEE
Q 028647            9 LKVIILGDSGV--GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         9 ~~i~viG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..++|+|.+|+  ||.+|+.+|....+.....+...+.++..+  ++++.+.  +.+-=.+--+++.-..........++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceeeE
Confidence            46789999999  999999999988877665555444444433  3333321  11111111111211122223446789


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      +++||++....+..++.|+..-.....     + -.+.++||.|..+.
T Consensus        83 vmvfdlse~s~l~alqdwl~htdinsf-----d-illcignkvdrvph  124 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQDWLPHTDINSF-----D-ILLCIGNKVDRVPH  124 (418)
T ss_pred             EEEEeccchhhhHHHHhhccccccccc-----h-hheecccccccccc
Confidence            999999999889999998764321110     1 24577999998654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.92  E-value=0.0003  Score=56.85  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.++++|+.|+||||++.+|..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            4689999999999999999874

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.91  E-value=9.5e-05  Score=49.93  Aligned_cols=106  Identities=19%  Similarity=0.184  Sum_probs=59.3

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC
Q 028647           12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                      ..-|..|+||||+...+...-.. ......-.+..   .......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            35578999999987665432100 00000000000   0000111567899999743  334457788999999999886


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        92 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      . .++......+..+.....     ..++.+|+|+.+-
T Consensus        78 ~-~s~~~~~~~l~~l~~~~~-----~~~~~lVvN~~~~  109 (139)
T cd02038          78 P-TSITDAYALIKKLAKQLR-----VLNFRVVVNRAES  109 (139)
T ss_pred             h-hHHHHHHHHHHHHHHhcC-----CCCEEEEEeCCCC
Confidence            3 334444444444433221     4578899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.89  E-value=0.00056  Score=53.23  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+|.|.-|||||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3578899999999999999853

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.86  E-value=0.0004  Score=54.80  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|+++|++|+||||.+.+|..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988763

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.86  E-value=0.00043  Score=55.45  Aligned_cols=87  Identities=16%  Similarity=0.103  Sum_probs=46.4

Q ss_pred             EEEEEEeCCChhhhc----cchhhhhc---cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           57 FTLQIWDTAGQERFQ----SLGVAFYR---GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      ..+.|+||+|.....    .....++.   ...-+.+|++++...  ..+......+    ...   + +--+++||.|-
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f----~~~---~-~~~vI~TKlDe  369 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF----SRL---P-LDGLIFTKLDE  369 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh----CCC---C-CCEEEEecccc
Confidence            467899999954332    22333333   334677888886431  2222222222    211   1 23688999995


Q ss_pred             CCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647          130 DGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      ...      .-.+..+....+ .|+.+++.=
T Consensus       370 t~~------~G~i~~~~~~~~-lPv~yit~G  393 (424)
T PRK05703        370 TSS------LGSILSLLIESG-LPISYLTNG  393 (424)
T ss_pred             ccc------ccHHHHHHHHHC-CCEEEEeCC
Confidence            432      334555555555 677666643

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.85  E-value=2.7e-05  Score=58.30  Aligned_cols=61  Identities=21%  Similarity=0.323  Sum_probs=39.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ....+++.|+|-||+|||||+|.+......      ....++.+..... .+.+.+.. .+.++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC-ceEEecCCCc
Confidence            356799999999999999999987643221      2333443333322 13444443 3678999993

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=0.00062  Score=57.85  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.|+++|+.|+||||.+.+|..
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHh
Confidence            4689999999999999999875

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00015  Score=57.41  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...++++|++||||||++.+|..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999998864

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=0.00054  Score=53.61  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++++|+.|+||||++.++..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999988763

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.73  E-value=2.6e-05  Score=54.83  Aligned_cols=23  Identities=35%  Similarity=0.795  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+|+|+|||||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.73  E-value=3e-05  Score=50.89  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.68  E-value=3.7e-05  Score=53.59  Aligned_cols=23  Identities=39%  Similarity=0.679  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+|+|++|||||||...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998864

>PRK07261 topology modulation protein; Provisional

Probab=97.65  E-value=4.2e-05  Score=53.58  Aligned_cols=23  Identities=35%  Similarity=0.651  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+|+|++|||||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998753

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.65  E-value=0.00033  Score=44.64  Aligned_cols=82  Identities=18%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           11 VIILG-DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        11 i~viG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      |+|.| ..|+||||+...+...--. .     +.  ....++.+.. +.+.++|+|+...  ......+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~--~vl~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GK--RVLLIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CC--cEEEEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence            56667 5699999998776532211 0     11  1112222222 5678999998642  233467778999999998


Q ss_pred             CCChhhHHHHHHHHH
Q 028647           90 VNSMKSFDNLNNWRE  104 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~  104 (206)
                      .+ ..++....+++.
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 445555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.62  E-value=0.0011  Score=49.83  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-+++++|++|+||||++..+..
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~   97 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAW   97 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            35899999999999999887753

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.59  E-value=5.7e-05  Score=51.07  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++|+||||||||++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998853

...

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.57  E-value=0.00044  Score=50.03  Aligned_cols=41  Identities=27%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             hccCcEEEEEEECCChhhHHHH---HHHHHHHHhhcCCCCCCC-CcEEEEEeCCCC
Q 028647           78 YRGADCCVLVYDVNSMKSFDNL---NNWREEFLIQASPSDPDN-FPFVVLGNKIDV  129 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl  129 (206)
                      .+++|.+++|+|++.. ++...   .++..++          + .++.+|+||.|-
T Consensus       153 ~~~vD~vivVvDpS~~-sl~taeri~~L~~el----------g~k~i~~V~NKv~e  197 (255)
T COG3640         153 IEGVDLVIVVVDPSYK-SLRTAERIKELAEEL----------GIKRIFVVLNKVDE  197 (255)
T ss_pred             ccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh----------CCceEEEEEeeccc
Confidence            4679999999999843 33333   3333333          4 689999999994

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.56  E-value=0.00073  Score=42.08  Aligned_cols=69  Identities=20%  Similarity=0.283  Sum_probs=43.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-hhhhhccCcEEEEEEE
Q 028647           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD   89 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d   89 (206)
                      +++.|..|+||||+...+...--.      .+.  ..  ..++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~--~v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK------RGK--RV--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH------CCC--eE--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999998887643211      011  11  1122    5678999985422221 2455667999999998


Q ss_pred             CCCh
Q 028647           90 VNSM   93 (206)
Q Consensus        90 ~~~~   93 (206)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            8754

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF05729 NACHT: NACHT domain

Probab=97.56  E-value=0.00024  Score=49.10  Aligned_cols=22  Identities=27%  Similarity=0.595  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++|.|++|+||||++.+++..
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            3789999999999999998754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.56  E-value=0.00078  Score=45.19  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-.+++.|++|+|||++++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999988754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.56  E-value=7.2e-05  Score=53.43  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++||+|||||||++.+-.-
T Consensus        30 vv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5799999999999999987653

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.55  E-value=3.9e-05  Score=59.34  Aligned_cols=83  Identities=18%  Similarity=0.147  Sum_probs=49.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEeCCeEEEEEEEeCCChh--hhccchhhhhcc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--RFQSLGVAFYRG   80 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~~~~~~~~   80 (206)
                      .+++.+.|+++|.||+||||+||.|....+... ..++.+.-+.  .+.   -.-.+-++|+||.=  ...+.....+  
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQ--YIt---LmkrIfLIDcPGvVyps~dset~ivL--  375 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQ--YIT---LMKRIFLIDCPGVVYPSSDSETDIVL--  375 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHH--HHH---HHhceeEecCCCccCCCCCchHHHHh--
Confidence            356789999999999999999999998876522 2333221111  011   11246789999931  1123333332  


Q ss_pred             CcEEEEEEECCChh
Q 028647           81 ADCCVLVYDVNSMK   94 (206)
Q Consensus        81 ~d~~i~v~d~~~~~   94 (206)
                       -+++=|-.+.+|+
T Consensus       376 -kGvVRVenv~~pe  388 (572)
T KOG2423|consen  376 -KGVVRVENVKNPE  388 (572)
T ss_pred             -hceeeeeecCCHH
Confidence             3555566666654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.54  E-value=0.00037  Score=48.80  Aligned_cols=44  Identities=25%  Similarity=0.207  Sum_probs=27.5

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                      |++++|+|+.++.+... ..+...+.  ....   +.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~~---~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL--QAGG---NKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH--hccC---CCCEEEEEehhhcCC
Confidence            78999999988643221 12222211  1111   679999999999975

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.53  E-value=9.7e-05  Score=43.42  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.52  E-value=8.9e-05  Score=58.19  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=21.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~   29 (206)
                      .+++..|+++|-.||||||...+|.
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA  121 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLA  121 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHH
Confidence            3567889999999999999988875

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.52  E-value=5.6e-05  Score=52.69  Aligned_cols=24  Identities=33%  Similarity=0.689  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .=+++.||+|+||||+++.|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999999765

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.0008  Score=53.29  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-+|+|+||.|+|||||+.-|++.-
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl  637 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKL  637 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCC
Confidence            3589999999999999998887653

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.48  E-value=9.3e-05  Score=53.64  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++|+||+|||||||++-+..-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            37999999999999999887543

>TIGR00235 udk uridine kinase

Probab=97.48  E-value=0.00014  Score=52.59  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +++..-|+|+|++|||||||++.+.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            455678999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.47  E-value=0.00014  Score=41.41  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+|.|+.||||||++..+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999988764

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.46  E-value=2.8e-05  Score=65.03  Aligned_cols=123  Identities=16%  Similarity=0.199  Sum_probs=74.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE----------------------------------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ----------------------------------   51 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------------------   51 (206)
                      -...+|+|+|..++||||.++.+.+..+.+......+..+-...+.                                  
T Consensus        27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e  106 (657)
T KOG0446|consen   27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE  106 (657)
T ss_pred             ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence            3457899999999999999999998655433222211111111100                                  


Q ss_pred             --------------------eCCeEEEEEEEeCCC-------------hhhhccchhhhhccCcEEEEEEECCChhhHHH
Q 028647           52 --------------------FEDRLFTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNSMKSFDN   98 (206)
Q Consensus        52 --------------------~~~~~~~~~i~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~   98 (206)
                                          +......++++|.||             ......+...++...+.+|+.+...+-+- .+
T Consensus       107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~-at  185 (657)
T KOG0446|consen  107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI-AT  185 (657)
T ss_pred             HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhh-hc
Confidence                                001112378899999             23445667788888899999888765221 11


Q ss_pred             HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647           99 LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS  134 (206)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  134 (206)
                       ..++.    .....++.+..++.|++|.|+.+...
T Consensus       186 -s~alk----iarevDp~g~RTigvitK~DlmdkGt  216 (657)
T KOG0446|consen  186 -SPALV----VAREVDPGGSRTLEVITKFDFMDKGT  216 (657)
T ss_pred             -CHHHH----HHHhhCCCccchhHHhhhHHhhhcCC
Confidence             11222    22333444778899999999876543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00011  Score=53.66  Aligned_cols=21  Identities=43%  Similarity=0.656  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++|++|||||||++-+.+-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999988763

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.45  E-value=0.00012  Score=55.55  Aligned_cols=25  Identities=24%  Similarity=0.550  Sum_probs=22.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++.|+++|-.|+||||-+.+|..
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~  161 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAK  161 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHH
Confidence            4589999999999999999988753

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.44  E-value=0.00076  Score=44.94  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.|++.|+.|+|||||++.+...-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.44  E-value=7.9e-05  Score=51.70  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6999999999999999999865

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.43  E-value=0.00016  Score=52.17  Aligned_cols=28  Identities=36%  Similarity=0.548  Sum_probs=23.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ..+..-|+|+|++|||||||++.|....
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            3456778899999999999999997543

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.42  E-value=0.0011  Score=51.56  Aligned_cols=84  Identities=19%  Similarity=0.117  Sum_probs=53.0

Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC  146 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  146 (206)
                      ...|.......+..+|++|.|+|+.||.+-.. .+.-..+...-.     +...|+|+||+|+.+   ++...+.+..+.
T Consensus       133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~-~~vE~~V~~~~g-----nKkLILVLNK~DLVP---rEv~e~Wl~YLr  203 (435)
T KOG2484|consen  133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRC-PEVEEAVLQAHG-----NKKLILVLNKIDLVP---REVVEKWLVYLR  203 (435)
T ss_pred             HHHHHHHHHHHHhhhheEEEeeeccCCCCCCC-hhHHHHHHhccC-----CceEEEEeehhccCC---HHHHHHHHHHHH
Confidence            34455666677788999999999999875222 122122221111     478999999999987   555566666666


Q ss_pred             HhcCCCcEEEeecc
Q 028647          147 ASKGNIPYFETSAK  160 (206)
Q Consensus       147 ~~~~~~~~~~~S~~  160 (206)
                      ++++ .-.+..|..
T Consensus       204 ~~~p-tv~fkast~  216 (435)
T KOG2484|consen  204 REGP-TVAFKASTQ  216 (435)
T ss_pred             hhCC-cceeecccc
Confidence            6666 333444433

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.42  E-value=0.013  Score=40.52  Aligned_cols=140  Identities=11%  Similarity=0.064  Sum_probs=93.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEe-CCChhhhccchhhhhccCcE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWD-TAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..+...|+++|..+.++..|...+....-      +    +.          ++++.-- .|=.    ......=...|.
T Consensus        12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~----------l~Vh~a~sLPLp----~e~~~lRprIDl   67 (176)
T PF11111_consen   12 ELNTATILLVGTEEALLQQLAEAMLEEDK------E----FK----------LKVHLAKSLPLP----SENNNLRPRIDL   67 (176)
T ss_pred             CcceeEEEEecccHHHHHHHHHHHHhhcc------c----ee----------EEEEEeccCCCc----ccccCCCceeEE
Confidence            34578999999999999999999885320      0    10          1111110 1100    111112346899


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      ++|++|.....++..+..-+..+-..+..    + .++++.+-....+.  ..+..+++.+++..++ .+++.+.-...+
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~ffl----G-KVCfl~t~a~~~~~--~sv~~~~V~kla~~y~-~plL~~~le~~~  139 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFL----G-KVCFLATNAGRESH--CSVHPNEVRKLAATYN-SPLLFADLENEE  139 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhc----c-ceEEEEcCCCcccc--cccCHHHHHHHHHHhC-CCEEEeecccch
Confidence            99999999999988887776665433321    3 45566655554433  6688999999999998 999999888887


Q ss_pred             CHHHHHHHHHHHH
Q 028647          164 NVEEAFQCIAKNA  176 (206)
Q Consensus       164 ~i~~l~~~l~~~~  176 (206)
                      +...+-+.|++.+
T Consensus       140 ~~~~lAqRLL~~l  152 (176)
T PF11111_consen  140 GRTSLAQRLLRML  152 (176)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766666666544

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.41  E-value=0.0018  Score=53.11  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4677999999999999998864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.40  E-value=0.0019  Score=45.51  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67999999999999999888753

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.40  E-value=0.00016  Score=51.27  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      +.=|+|+||+|||||||+++|....
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            3558999999999999999998753

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.39  E-value=0.00022  Score=48.06  Aligned_cols=21  Identities=33%  Similarity=0.806  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK06217 hypothetical protein; Validated

Probab=97.39  E-value=0.00017  Score=51.11  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+|+|.+||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998864

>PRK03839 putative kinase; Provisional

Probab=97.38  E-value=0.00015  Score=51.19  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+++|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998764

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.38  E-value=0.00068  Score=52.35  Aligned_cols=95  Identities=19%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             EeCCCh-hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH
Q 028647           62 WDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK  140 (206)
Q Consensus        62 ~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (206)
                      -+.||+ ..+.......+...|+++-|+|+.+|.+....     .+.....     +.|.++|+||.|+.+.   ....+
T Consensus        15 ~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~-----~k~~i~vlNK~DL~~~---~~~~~   81 (322)
T COG1161          15 QWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVK-----EKPKLLVLNKADLAPK---EVTKK   81 (322)
T ss_pred             cCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHc-----cCCcEEEEehhhcCCH---HHHHH
Confidence            345664 45666777888999999999999998653322     1222222     5566999999999874   33444


Q ss_pred             HHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647          141 KARAWCASKGNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       141 ~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      ..+.+.+..+ ...+.+++..+.+...+..
T Consensus        82 W~~~~~~~~~-~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          82 WKKYFKKEEG-IKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HHHHHHhcCC-CccEEEEeecccCccchHH
Confidence            4444544443 7788899998888777774

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.36  E-value=0.00016  Score=52.99  Aligned_cols=26  Identities=31%  Similarity=0.655  Sum_probs=22.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++++|+|++|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999888754

This is thought to be an ATPase involved in viral DNA packaging [].

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.36  E-value=0.00018  Score=52.66  Aligned_cols=26  Identities=31%  Similarity=0.612  Sum_probs=22.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++|+|+|+|||||||+...|...
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            44588999999999999999988653

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.34  E-value=0.00018  Score=47.52  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998865

...

>PRK14530 adenylate kinase; Provisional

Probab=97.33  E-value=0.00019  Score=52.17  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.33  E-value=0.0002  Score=48.01  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57999999999999999888653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.31  E-value=0.00023  Score=48.07  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|+|+|+.|||||||+..|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.31  E-value=0.00022  Score=47.32  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999865

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.28  E-value=0.00025  Score=50.32  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++|+|++|||||||++.|....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999997643

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.28  E-value=0.00026  Score=51.19  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.+.|+|.|++|||||||.+.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999998764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.27  E-value=0.00026  Score=49.39  Aligned_cols=21  Identities=48%  Similarity=0.713  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++|+|++|+|||||+|-+.+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            689999999999999998765

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.27  E-value=0.00028  Score=47.00  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKF   33 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      -.++++|++|+||||++..+...-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4689999999999999999987543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14532 adenylate kinase; Provisional

Probab=97.27  E-value=0.00024  Score=50.53  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+++|+|||||||+..+|...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998753

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.27  E-value=0.00026  Score=45.19  Aligned_cols=21  Identities=48%  Similarity=0.800  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 028647            9 LKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~   29 (206)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999998875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.27  E-value=0.0012  Score=47.31  Aligned_cols=22  Identities=23%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028647           11 VIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      |+|.|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.25  E-value=0.00026  Score=49.84  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0012  Score=51.23  Aligned_cols=94  Identities=17%  Similarity=0.262  Sum_probs=52.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC----CCC------CCCCC-----------ccceeEEEEEE-------------
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK----KFS------NQYKA-----------TIGADFLTKEV-------------   50 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~----~~~------~~~~~-----------~~~~~~~~~~~-------------   50 (206)
                      +.++-.|.++|-.|+||||.+.+|...    .+.      +...+           ..+..++....             
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~  177 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD  177 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence            344567899999999999998877431    110      00000           01111211111             


Q ss_pred             EeCCeEEEEEEEeCCChhhhc----cchhhh--hccCcEEEEEEECCChhhHHH
Q 028647           51 QFEDRLFTLQIWDTAGQERFQ----SLGVAF--YRGADCCVLVYDVNSMKSFDN   98 (206)
Q Consensus        51 ~~~~~~~~~~i~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~   98 (206)
                      .+....+.+.|.||.|.....    ......  +-+.|-+|+|.|++-....+.
T Consensus       178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~  231 (483)
T KOG0780|consen  178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA  231 (483)
T ss_pred             HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence            123445778999999943221    222211  235899999999986544333

>PRK13949 shikimate kinase; Provisional

Probab=97.23  E-value=0.00031  Score=49.05  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+|+|++||||||+.+.|...
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999987753

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.23  E-value=0.00037  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-+.|+|++|||||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999864

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.22  E-value=0.00028  Score=49.98  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+|+|++||||||+.+.|..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.22  E-value=0.00025  Score=50.70  Aligned_cols=19  Identities=32%  Similarity=0.611  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028647           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      .+++||+|+|||||++.|=
T Consensus        36 TAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            4899999999999998764

>PRK08233 hypothetical protein; Provisional

Probab=97.22  E-value=0.00034  Score=49.29  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +-|+|.|++|||||||.+.|...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            67899999999999999999864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.22  E-value=0.00029  Score=50.54  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|.|++|||||||.+.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.21  E-value=0.0013  Score=42.14  Aligned_cols=101  Identities=15%  Similarity=0.082  Sum_probs=54.0

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCCh
Q 028647           14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM   93 (206)
Q Consensus        14 iG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (206)
                      =+..|+||||+...|...-.........     ....+.... ..+.++|+|+...  ......+..+|.++++++.+. 
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~-----l~d~d~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~-   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVL-----LVDLDLQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL-   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEE-----EEECCCCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-
Confidence            3567899999876664321111001110     000000000 1578999998542  334556788999999997764 


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647           94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (206)
Q Consensus        94 ~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  126 (206)
                      .+......++..+......   +...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~---~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYS---LPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCC---CcCceEEEecC
Confidence            4445555555554433211   12356777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.21  E-value=0.00032  Score=49.46  Aligned_cols=22  Identities=36%  Similarity=0.712  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4799999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.19  E-value=0.0057  Score=43.01  Aligned_cols=84  Identities=24%  Similarity=0.280  Sum_probs=55.2

Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR  135 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (206)
                      .+.+.++|+|+...  ......+..+|.+++++..+.. +...+..++..+...       +.|+.+|+||.|....   
T Consensus        92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-------~~~~~vV~N~~~~~~~---  158 (179)
T cd03110          92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-------GIPVGVVINKYDLNDE---  158 (179)
T ss_pred             CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-------CCCEEEEEeCCCCCcc---
Confidence            46789999997532  2345567889999999988743 444555554444321       5678999999996432   


Q ss_pred             cccHHHHHHHHHhcCCCcEE
Q 028647          136 VVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~  155 (206)
                        ..++..++.+.++ .+++
T Consensus       159 --~~~~~~~~~~~~~-~~vl  175 (179)
T cd03110         159 --IAEEIEDYCEEEG-IPIL  175 (179)
T ss_pred             --hHHHHHHHHHHcC-CCeE
Confidence              3455666777765 5554

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.19  E-value=0.0025  Score=43.73  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|.|++|+|||+++..+...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~   22 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALN   22 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHH
Confidence            689999999999999988654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.18  E-value=0.00032  Score=50.82  Aligned_cols=20  Identities=40%  Similarity=0.708  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      |+++|++|+|||||++.+-+
T Consensus        33 VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          33 VAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            78999999999999998876

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.17  E-value=0.0019  Score=46.96  Aligned_cols=103  Identities=13%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS  134 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  134 (206)
                      +.+.|+|+.|...  ......+..+|.+|+=.-.+..+.-+.  ...|+.++..    ...+.+|.-|++|++.-..   
T Consensus        84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~----~~~~~ip~~Vl~Tr~~~~~---  154 (231)
T PF07015_consen   84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEK----AERRDIPAAVLFTRVPAAR---  154 (231)
T ss_pred             CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHH----hhCCCCCeeEEEecCCcch---
Confidence            5678999998642  224455667999998776664333222  2233333332    2233799999999987432   


Q ss_pred             ccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHH
Q 028647          135 RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC  171 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~  171 (206)
                      .........++..   ..|++.+...+..-+..++..
T Consensus       155 ~~~~~~~~~e~~~---~lpvl~t~l~eR~Af~~m~~~  188 (231)
T PF07015_consen  155 LTRAQRIISEQLE---SLPVLDTELHERDAFRAMFSR  188 (231)
T ss_pred             hhHHHHHHHHHHh---cCCccccccccHHHHHHHHHh
Confidence            1122233334433   377899998888878777773

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK07429 phosphoribulokinase; Provisional

Probab=97.16  E-value=0.00049  Score=53.16  Aligned_cols=30  Identities=30%  Similarity=0.450  Sum_probs=25.3

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      |......++.|+|.|++|||||||.+.|..
T Consensus         1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~   30 (327)
T PRK07429          1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD   30 (327)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence            445566789999999999999999988874

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.00033  Score=47.06  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=22.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ....+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            5568999999999999999999874

>PRK10646 ADP-binding protein; Provisional

Probab=97.16  E-value=0.0044  Score=42.31  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      --|++-|.-|+|||||++.+...-
T Consensus        29 ~vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         29 TVIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            358999999999999999998653

>PRK06547 hypothetical protein; Provisional

Probab=97.16  E-value=0.00046  Score=48.31  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=22.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+.|+|.|++||||||+.+.|...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678899999999999999999764

>PRK02496 adk adenylate kinase; Provisional

Probab=97.16  E-value=0.00043  Score=49.01  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+|+|+|||||||+.+.|...
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~   24 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEH   24 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988753

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.14  E-value=0.00036  Score=50.93  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|.|++|||||||++.|...
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999988754

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK14531 adenylate kinase; Provisional

Probab=97.14  E-value=0.00042  Score=49.07  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+++|+|||||||+...|...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988654

>PRK01889 GTPase RsgA; Reviewed

Probab=97.14  E-value=0.00054  Score=53.70  Aligned_cols=24  Identities=42%  Similarity=0.740  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.++++|.+|+|||||+|.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            378999999999999999998643

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.14  E-value=0.00036  Score=49.72  Aligned_cols=22  Identities=27%  Similarity=0.632  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-82
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-82
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-81
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-81
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-65
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-51
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-51
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-51
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-50
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-33
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		6e-33
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-31
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-31
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-31
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		5e-31
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-31
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-31
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		9e-31
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-30
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-30
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-30
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-30
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-30
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-30
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-30
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-30
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-30
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-30
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-30
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-30
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-30
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-30
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-30
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		5e-30
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-30
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		5e-30
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		5e-30
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-30
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		6e-30
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		7e-30
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-29
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-29
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-29
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-29
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-29
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-29
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-29
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-29
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-29
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-29
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		4e-29
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		5e-29
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		6e-29
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		7e-29
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		7e-29
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-29
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-28
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-28
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-28
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-28
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-28
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-28
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-28
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-28
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		5e-28
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		6e-28
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-27
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-27
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-27
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-27
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-27
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-27
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-27
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-27
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-27
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		6e-27
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		7e-27
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		8e-27
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-27
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-26
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-26
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-26
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-26
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-26
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-26
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-26
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-26
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		6e-26
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-26
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		7e-26
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-26
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-24
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-24
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-24
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-24
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		9e-24
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		6e-23
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-22
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-22
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-21
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		6e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-21
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-21
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-21
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-21
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		8e-21
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		8e-21
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		9e-21
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-20
1byu_A	216	Canine Gdp-Ran Length = 216		2e-20
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		4e-20
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		6e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		6e-20
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		6e-20
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		7e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		7e-20
3icq_B	171	Karyopherin Nuclear State Length = 171		8e-20
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		9e-20
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		9e-20
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-19
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-19
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-19
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-18
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-18
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-18
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-17
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		6e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		6e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		7e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		7e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-17
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		9e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		9e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-16
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-16
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-16
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-16
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-16
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-16
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-16
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-16
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-16
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-16
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-16
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-16
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-16
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-16
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-16
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-16
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-16
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-16
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		5e-16
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		5e-16
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		6e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		7e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-16
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		7e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		8e-16
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-15
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-14
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		6e-14
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-13
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-13
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-13
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		6e-13
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-12
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		3e-12
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-12
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		4e-12
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		5e-12
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		6e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		6e-12
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		6e-12
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		8e-12
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		8e-12
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		8e-12
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-11
1mh1_A	186	Small G-Protein Length = 186		2e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-11
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-11
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-11
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-11
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-11
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-11
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-11
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-11
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-11
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-11
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		3e-11
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-11
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-11
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-11
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-11
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-11
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-11
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-11
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-11
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-11
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-11
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		4e-11
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-11
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		4e-11
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		6e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		6e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		6e-11
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		8e-11
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		9e-11
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-10
2kb0_A	178	Cdc42(T35a) Length = 178		1e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-10
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-10
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-10
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-10
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-10
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-10
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-10
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-10
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-10
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-10
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-10
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-10
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-10
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		5e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		6e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-10
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		7e-10
2bmj_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		2e-09
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		7e-09
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		8e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-08
2iwr_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		3e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-07
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-07
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		8e-07
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-06
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-06
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-06
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-06
3qq5_A	423	Crystal Structure Of The [fefe]-Hydrogenase Maturat		4e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		5e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		6e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		7e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		7e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-05
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		2e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-05
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		5e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		9e-05
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-04
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		2e-04
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		3e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		3e-04
1g7s_A	594	X-Ray Structure Of Translation Initiation Factor If		3e-04
1g7r_A	594	X-Ray Structure Of Translation Initiation Factor If		4e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		4e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		4e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		5e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		7e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		8e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		8e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		9e-04

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  302 bits (773), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/208 (70%), Positives = 172/208 (82%), Gaps = 5/208 (2%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK  
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 EEEEIY--LPDTIDVGNSSQPRSSGCEC 206
            E E+Y   P+ I +  + + ++S   C
Sbjct: 178 TEVELYNEFPEPIKLDKNERAKASAESC 205

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/208 (70%), Positives = 171/208 (82%), Gaps = 5/208 (2%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNKID +   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK  
Sbjct: 121 VVLGNKIDFE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 EEEEIY--LPDTIDVGNSSQPRSSGCEC 206
            E E+Y   P+ I +  + + ++S   C
Sbjct: 178 TEVELYNEFPEPIKLDKNDRAKASAESC 205

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  298 bits (764), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/210 (69%), Positives = 172/210 (81%), Gaps = 7/210 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAG ERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK  
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 EEEEIY--LPDTIDVGNSSQPRSSG--CEC 206
            E E+Y   P+ I +  + + ++S   C C
Sbjct: 178 TEVELYNEFPEPIKLDKNDRAKASAESCSC 207

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/186 (76%), Positives = 162/186 (87%), Gaps = 3/186 (1%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK  
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 EEEEIY 186
            E E+Y
Sbjct: 178 TEVELY 183

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  243 bits (620), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/182 (63%), Positives = 148/182 (81%), Gaps = 2/182 (1%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
           M SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
           Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FP
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           FV+LGNKID +  + ++VSEK A+    S G+IP F TSAK  INV+ AF+ IA++AL+ 
Sbjct: 121 FVILGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179
Query: 180 GE 181
            +
Sbjct: 180 NQ 181

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 125/175 (71%), Gaps = 3/175 (1%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 4   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 64  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           NKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L +
Sbjct: 124 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 125/175 (71%), Gaps = 3/175 (1%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 6   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 65
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 66  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           NKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L +
Sbjct: 126 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 127/182 (69%), Gaps = 3/182 (1%)
Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S +  LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIW
Sbjct: 2   SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           DTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP++FPFVV
Sbjct: 62  DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           LGNK+D +    R V+ ++A+ WC   G+ PY ETSAK+  NV  AF+   +  L   E+
Sbjct: 122 LGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQ 178
Query: 183 EE 184
            E
Sbjct: 179 LE 180

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  194 bits (492), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 88/175 (50%), Positives = 124/175 (70%), Gaps = 3/175 (1%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +L K+I+LGD GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 8   KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 68  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           NK D+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L +
Sbjct: 128 NKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 126/216 (58%), Gaps = 23/216 (10%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
              V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +    +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 KSGEE--EEIYLPDTIDVGNSS-----QPRSSGCEC 206
           K  E+  E+  +PDT++ GNS      +P    C C
Sbjct: 185 KRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  136 bits (343), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 120/199 (60%), Gaps = 18/199 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD 
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 143
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
              V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE+A + +    +
Sbjct: 144 --IVLIGNKADLP--DQREVNERQARE-LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 178 KSGEE--EEIYLPDTIDVG 194
           K  E+  E+  +PDT++ G
Sbjct: 199 KRMEQCVEKTQIPDTVNGG 217

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 118/196 (60%), Gaps = 18/196 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
              V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +    +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 KSGEE--EEIYLPDTI 191
           K  E+  E+  +PDT+
Sbjct: 185 KRMEKCVEKTQVPDTV 200

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 18/199 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L +D+ S +SF N+ NW  +    A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
              V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +     
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 178 KSGEE--EEIYLPDTIDVG 194
           K  E+  E+  +PDT++ G
Sbjct: 185 KRXEKCVEKTQVPDTVNGG 203

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 8/175 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++   +YRG    ++VYDV S +SF N+  W  E        + D+   +++GNK 
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-----NQNCDDVCRILVGNK- 122
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
             D    +VV  + A  +    G I  FETSAKE +NVEE F CI +  L++ ++
Sbjct: 123 -NDDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKD 175

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  +++ Y +TIG DF  + +  E++   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV    SFDN+  W +E    A     +N   +++GNK 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA----MENVNKLLVGNKC 124
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+   + RVV+  + R    S G I + ETSAK   NVE+AF  +A
Sbjct: 125 DL--VSKRVVTSDEGRELADSHG-IKFIETSAKNAYNVEQAFHTMA 167

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 7/168 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS     +   ++LGNK 
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKC 121
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           DV+  + R VS+++        G I + ETSAK  INVE AF  +A++
Sbjct: 122 DVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 166

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
           D+   + R V   +ARA+ A K N+ + ETSA +  NVEEAF+ I
Sbjct: 121 DL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNI 162

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 7/168 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS     +   ++LGNK 
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKC 123
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           DV+  + R VS+++        G I + ETSAK  INVE AF  +A++
Sbjct: 124 DVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 168

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 140
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A
Sbjct: 141 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 183

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS        + GNK D
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKAD 124
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           +   N R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IAK   KS
Sbjct: 125 L--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 172

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 119
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 120 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 162

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE+AF  +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK  L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 16/184 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLF 57
           L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +  
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
              V+ GNK D++  + R V E++AR   A K  IPYFETSA  G N+  A + +    +
Sbjct: 130 --IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 178 KSGE 181
           K  E
Sbjct: 185 KRME 188

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE+AF  +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF SL   +YRG+   V+VYD+    SF  L  W +E         P+N    + GNK D
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL----KEHGPENIVMAIAGNKCD 139
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   + R V  K A+ +  S G I   ETSAK  IN+EE FQ I++
Sbjct: 140 LS--DIREVPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISR 182

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
           D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 166

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 135
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
           D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct: 136 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 148
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE++F   A
Sbjct: 149 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFXTXA 191

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 104/164 (63%), Gaps = 7/164 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK D+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 116
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
                +VV    A+ +  S G IP+ ETSAK   NVE++F  +A
Sbjct: 117 --TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 157

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK   NV E F  IAK
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFXETSAKTSXNVNEIFXAIAK 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TI A FLT+ V  +D     +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
           D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++G K 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGIKC 123
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A
Sbjct: 124 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK
Sbjct: 122 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 164

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 16/175 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L +D+ S +SF N+ NW  +    A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
              V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETL 179

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 123
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
           D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct: 124 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      PS        + GNK D
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   + R V E+ A+ +  S   I + ETSAK  IN+ E F  I++
Sbjct: 122 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 164

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N    ++GNK 
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 126
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
           D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct: 127 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N    ++GNK 
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 120
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
           D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct: 121 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 106/166 (63%), Gaps = 8/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F TK +Q ++ ++   QIWDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QER++++  A+YRGA   +LVYD+    SF+N+  W +E    A      N   +++GNK
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS----NIVILLVGNK 122
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
            D+   + RV+++  A  + A K  + + ETSA E  NVE AF  +
Sbjct: 123 SDLK--HLRVINDNDATQY-AKKEKLAFIETSALEATNVELAFHQL 165

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      PS        + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +   + R V E+ A+ +  S   I + ETSAK  IN+ E F  I++
Sbjct: 123 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A      N   +++GNK 
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSSSNMVIMLIGNKS 136
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D++  + R V  ++  A+    G I + ETSAK   NVEEAF   AK
Sbjct: 137 DLE--SRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAK 180

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAG
Sbjct: 19  SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    D    +++GNK
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 134
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D++   +RVV+  +  A     G IP+ E+SAK   NV E F  +AK
Sbjct: 135 SDME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 178

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAG
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYD+   ++F N+  W +      +    D    +++GNK
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFK----TVNEHANDEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D++   +RVV+  +  A     G IP+ E+SAK   NV E F  +AK
Sbjct: 118 SDME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAG
Sbjct: 6   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    D    +++GNK
Sbjct: 66  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 121
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D++   +RVV+  +  A     G IP+ E+SAK   NV E F  +AK
Sbjct: 122 SDME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 165

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 107/177 (60%), Gaps = 10/177 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW    L  A      N   ++ GNK 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF-QCIAK--NALKSGE 181
           D+D    R V+  +A  + A +  + + ETSA  G NVEEAF QC  K  N ++SGE
Sbjct: 126 DLDA--DREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 179

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 112/185 (60%), Gaps = 7/185 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +       
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLK 116
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           +++GNK D+   + RVV    A+ + A    +P+ ETSA +  NVE+AF  +A+   +S 
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 EEEEI 185
            ++ +
Sbjct: 174 SQQNL 178

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 112/185 (60%), Gaps = 7/185 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +       
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLK 116
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           +++GNK D+   + RVV    A+ + A    +P+ ETSA +  NVE+AF  +A+   +S 
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 EEEEI 185
            ++ +
Sbjct: 174 SQQNL 178

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + +  + +   LQIWDTAGQ
Sbjct: 10  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+    +F++L  W E+    A      N   +++GNK 
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLED----ARQHSNSNMVIMLIGNKS 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D++  + R V +++  A+    G I + ETSAK   NVEEAF   AK
Sbjct: 126 DLE--SRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAK 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           ++ K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAG
Sbjct: 2   SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+    D    +++GNK
Sbjct: 62  QERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D +   +RVV+  +  A     G IP+ E+SAK   NV E F  +AK
Sbjct: 118 SDXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 8/167 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  A+YR A   +L+YDV +  SFDN+  W    L +       +   ++LGNK 
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW----LTEIHEYAQHDVALMLLGNK- 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            VD  + RVV  +         G +P+ ETSAK G+NV+ AF  IAK
Sbjct: 126 -VDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAK 170

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           ++ K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAG
Sbjct: 2   SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    D    +++GNK
Sbjct: 62  QERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D +   +RVV+  +  A     G IP+ E+SAK   NV E F  +AK
Sbjct: 118 SDXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF   + W ++           +   +++GNK D
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDD----VRTERGSDVIIMLVGNKTD 118
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +       + E + R   A + ++ + ETSAK G NV++ F+ +A   L+
Sbjct: 119 LADKRQITIEEGEQR---AKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 107/172 (62%), Gaps = 7/172 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +       +++GNK 
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLKLLVGNKC 136
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           D+   + RVV    A+ + A    +P+ ETSA +  NVE+AF  +A+   +S
Sbjct: 137 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 185

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 101/163 (61%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W      Q      DN   +++GNK 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKC 120
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           D++  + RVVS ++ R      G   +FE SAK+ INV++ F+
Sbjct: 121 DME--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 160

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 116/190 (61%), Gaps = 7/190 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ ++ E +    QIWDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   ++VYD++   S++N N+W  E    A     DN    ++GNK 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKS 128
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D+   + R V  ++++ + A +  + + ETSA    NV++AF+ +     +   + ++ L
Sbjct: 129 DL--AHLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL 185
Query: 188 PDTIDVGNSS 197
            D+   GN++
Sbjct: 186 GDSSANGNAN 195

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF     W ++           +   +++GNK D
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKTD 117
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           +   + R VS    E+KA+       N+ + ETSAK G NV++ F+ +A
Sbjct: 118 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 159

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 19/206 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 129
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 184
           +   + R VS    E+KA+       N+ + ETSAK G NV++ F+ +A         ++
Sbjct: 130 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 182
Query: 185 IYLPDTIDV---GNSSQPRSS-GCEC 206
               D ID+       QP S  GC C
Sbjct: 183 RSREDMIDIKLEKPQEQPVSEGGCSC 208

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 103/170 (60%), Gaps = 8/170 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            F ++  A+YRGA  CVLV+     +SF+ +++WRE+ +     ++  + P  ++ NKID
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV-----AEVGDIPTALVQNKID 120
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +   +   +  ++A    A +  + ++ TS KE +NV E F+ +A+  L+
Sbjct: 121 L--LDDSCIKNEEAEG-LAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 122
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           +   + R VS    E+KA+       N+ + ETSAK G NV++ F+ +A
Sbjct: 123 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ +  SF   + W ++   +       +   +++GNK D
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTD 130
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           +     +V +E+  R   A + N+ + ETSAK G NV++ F+ +A
Sbjct: 131 L-SDKRQVSTEEGERK--AKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF S+  A+YR A   +LVYD+   ++FD+L  W +     AS    ++   +++GNK+D
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 142
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
            +    R ++ ++   +      + + E SAK+  NV+E F  +  + LK
Sbjct: 143 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 8/170 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAG
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF SL   +YR A   ++VYDV   +SF    +W +E   QAS     +    ++GNK
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNK 117
Query: 127 IDV--DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           ID   +GG  +V  E+  +   A +  + +FETSAK G NV + F  I +
Sbjct: 118 IDXLQEGGERKVAREEGEK--LAEEKGLLFFETSAKTGENVNDVFLGIGE 165

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 8/168 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW    L  A      N   ++ GNK 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 126
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF-QCIAK 174
           D+D    R V+  +A  + A +  + + ETSA  G +VEEAF QC  K
Sbjct: 127 DLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARK 171

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 122
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           +   + R VS    E+KA+       N+ + ETSAK G NV++ F+ +A
Sbjct: 123 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
           P     + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQI
Sbjct: 9   PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAGQERF+++  ++YRGA   ++VYD+    ++++L++W    L  A      N   +
Sbjct: 69  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVII 124
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           ++GNK D++    R V+ ++A+ +    G + + E SAK G NVE+AF   AK
Sbjct: 125 LIGNKADLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAK 174

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF +LG  +YR ++  +LVYD+    SF  + NW +E          +     ++GNKID
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKID 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           ++    R VS ++A ++  S G   ++ TSAK+   +EE F  + K  +++
Sbjct: 123 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 132
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 184
           +   + R VS    E+KA+       N+ + ETSAK G NV++ F+ +A         ++
Sbjct: 133 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 185
Query: 185 IYLPDTIDV---GNSSQPRSSG 203
               D ID+       QP S G
Sbjct: 186 RSREDMIDIKLEKPQEQPVSEG 207

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +P     + K++++G+S VGKTS + +Y +  F+  + +T+G DF  K V   D+   LQ
Sbjct: 15  VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQ 74
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQER++++  A+YRGA   +L+YD+ + +SF  + +W      Q      DN   
Sbjct: 75  IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW----ATQIKTYSWDNAQV 130
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +++GNK D++  + RVV  +  R      G   +FE SAKE INV++ F+
Sbjct: 131 ILVGNKCDLE--DERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFE 177

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K V   ++   LQIWDTAGQ
Sbjct: 23  MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W      Q      DN   +++GNK 
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----ATQIKTYSWDNAQVILVGNKC 138
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           D++    RVV  +K +   A +    +FE SAKE I+V +AF+
Sbjct: 139 DME--EERVVPTEKGQL-LAEQLGFDFFEASAKENISVRQAFE 178

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 99/166 (59%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    AS    +    V++GNKI
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKI 141
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     R VS+++A  +  ++ ++ Y ETSAKE  NVE+ F  +A
Sbjct: 142 DL--AERREVSQQRAEEFSEAQ-DMYYLETSAKESDNVEKLFLDLA 184

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S +++++L  W  +    ASP    N   ++ GNK 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK---NALKSGE 181
           D+D    R V+  +A  + A +  + + ETSA  G NVEEAF   A+   N + SGE
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 97/162 (59%), Gaps = 7/162 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R++++  A+YRGA   +L YD+ + +SF+ + +W      Q      DN   +++GNK D
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKCD 124
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
            +  + RVVS ++ R      G   +FE SAK+ INV++ F+
Sbjct: 125 XE--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 163

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +   D     +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + SL   +YRGA   ++V+DV +  SF+    W +E   Q +P    N    + GNK D+
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDL 129
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
              ++R V+ + A+ +    G + + ETSAK   NV+E F  IA+
Sbjct: 130 L--DARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIAR 171

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW    L  A      N   ++ GNK 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 123
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF-QCIAK 174
           D+D    R V+  +A  + A +  + + ETSA  G +VEEAF QC  K
Sbjct: 124 DLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARK 168

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 105/163 (64%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ E++    QIWDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   ++VYD++   S++N N+W    L +   +  DN    ++GNK 
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW----LTELRENADDNVAVGLIGNKS 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           D+   + R V   +A+ + A +  + + ETSA    NV++AF+
Sbjct: 126 DL--AHLRAVPTDEAKNF-AMENQMLFTETSALNSDNVDKAFR 165

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KV++LG+  VGKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF +LG  +YR ++  +LVYD+    SF  + NW +E          +     ++GNKID
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKID 136
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           ++    R VS ++A ++  S G   ++ TSAK+   +EE F  + K  +++
Sbjct: 137 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 184

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 7/173 (4%)
Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
           P     + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQI
Sbjct: 24  PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 83
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAGQ RF+++  ++YRGA   ++VYD+    ++++L++W    L  A      N   +
Sbjct: 84  WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVII 139
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           ++GNK D++    R V+ ++A+ +    G + + E SAK G NVE+AF   AK
Sbjct: 140 LIGNKADLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAK 189

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KV++LG+  VGKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF +LG  +YR ++  +LVYD+    SF  + NW +E          +     ++GNKID
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKID 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           ++    R VS ++A ++  S G   ++ TSAK+   +EE F  + K  +++
Sbjct: 123 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A  +       +++GNK 
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 140
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D+    +R V  ++AR +  + G + + ETSA +  NVE AF+ + K
Sbjct: 141 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 184

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 10  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A  +       +++GNK 
Sbjct: 70  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D+    +R V  ++AR +  + G + + ETSA +  NVE AF+ + K
Sbjct: 126 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 169

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 97/166 (58%), Gaps = 6/166 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GD+ VGKT ++ ++    FS +  +TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YR A+  +L YD+    SF ++ +W E+    A      N   +++GNK 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKS 144
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           D+     R VS  +A++       +   ETSAK+  NVEEAF  +A
Sbjct: 145 DLS--ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAG
Sbjct: 14  TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF++L  ++YRGA   +LVYDV    +F  L+NW  E     + +D  N    ++GNK
Sbjct: 74  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN---XLVGNK 130
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           ID +   +R V   +   + A K +  + E SAK    V+ AF+ + +  +++
Sbjct: 131 IDKE---NREVDRNEGLKF-ARKHSXLFIEASAKTCDGVQCAFEELVEKIIQT 179

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  106 bits (265), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 7/164 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTS++ ++    F N Y++TIG DFL+K +  ++    LQ+WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+SL  ++ R +   ++VYD+ + +SF+N   W ++ L +       +    ++GNK D+
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK----DVIIALVGNKTDL 118
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
             G+ R V+ ++     A + N  + ETSAK G N++  F+  A
Sbjct: 119 --GDLRKVTYEEGXQ-KAQEYNTXFHETSAKAGHNIKVLFKKTA 159

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R  + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDT
Sbjct: 17  RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 65  AGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
           AGQERF +S+   +YR     V VYD+ +M SF +L  W EE       +D    P +++
Sbjct: 77  AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILV 133
Query: 124 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIAKNALKS 179
           GNK D+       V    A+ + A   ++P FETSAK   +  +VE  F  +A + LKS
Sbjct: 134 GNKCDLRSAIQ--VPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLA-HKLKS 188

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +P  R  + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 61  IWDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
           +WDTAGQERF +S+   +YR     V VYD  +  SF +L  W EE       +D    P
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IP 138
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIAKNA 176
            +++GNK D+       V    A+ + A   + P FETSAK   +  +VE  F  +A + 
Sbjct: 139 RILVGNKCDLRSAIQ--VPTDLAQKF-ADTHSXPLFETSAKNPNDNDHVEAIFXTLA-HK 194
Query: 177 LKS 179
           LKS
Sbjct: 195 LKS 197

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           ++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 115

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
           LK+++LGD   GKTSL   +  + F  QYK TIG DF  + +     L  TLQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GNK 126
                +   +  GA   +LVYD+ + +SF+NL +W    +++    + +  P V L GNK
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYT--VVKKVSEESETQPLVALVGNK 124
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           ID++  + R +  +K   +C   G   +F  SAK G +V   FQ +A   L
Sbjct: 125 IDLE--HMRTIKPEKHLRFCQENGFSSHF-VSAKTGDSVFLCFQKVAAEIL 172

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++ GD+ VGK+S + +    +F     AT+G DF  K +  +     LQ+WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+S+  +++R AD  +L+YDV   KSF N+  W +  +I+ +    +  P +++GNK D+
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD--MIEDAAH--ETVPIMLVGNKADI 145
Query: 130 DGGNS----RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
               +    + V          + G + + ETSAK+G N+ EA   +A+   K
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D+ G   R V  ++A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 118 CDLAG---RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D+    +R V  ++A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 118 CDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D+    +R V  ++A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 118 CDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 131 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D+    +R V  ++A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 118 CDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 118
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 119 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 173

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNK 118
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
            D+    SR V  K+A+    S G IP+ ETSAK    V++AF  + +   K  E+
Sbjct: 119 SDL---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNK 118
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
            D+    SR V  K+A+    S G IP+ ETSAK    V++AF  + +   K  E
Sbjct: 119 CDL---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKE 169

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           ++  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y  T+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 14/164 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----ARAWCASKGNIPYFETSAKEGINVEEAF 169
           +  + RVV +++    AR WC    N  + E+SAK  INV E F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++ +DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E +  P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXP 180

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 30/190 (15%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 65
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V
Sbjct: 66  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 120
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           + GNK+D        V E+K +A   +   K N+ Y++ SAK   N E+ F  +A+    
Sbjct: 121 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 172
Query: 179 SGEEEEIYLP 188
           + + E +  P
Sbjct: 173 NPQLEFVASP 182

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 122 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----ARAWCASKGNIPYFETSAKEGINVEEAF 169
           +  + RVV +++    AR WC    N  + E+SAK  INV E F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 127
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 128 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 30/176 (17%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 57
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V
Sbjct: 58  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 112
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETSAKEGINVEEAFQCIAK 174
           + GNK+D        V E+K +A   +   K N+ Y++ SAK   N E+ F  +A+
Sbjct: 113 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 160

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +   +Y AT+G +                +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct: 131 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 30/176 (17%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V
Sbjct: 59  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 113
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETSAKEGINVEEAFQCIAK 174
           + GNK+D        V E+K +A   +   K N+ Y++ SAK   N E+ F  +A+
Sbjct: 114 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 161

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 6/160 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D D+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           +  + RVV +++ +       N  + E+SAK  INV E F
Sbjct: 121 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 4   RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED---RLFTLQ 60
           RR    K+ ++GD GVGKT+ +N+ ++ +F   Y AT+GA  +   V F D    +    
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKFN 64
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           +WDTAGQE+   L   +Y GA   +L +DV S  +  NL  W +EF  QA   +    P 
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEA--PI 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           VV  NKID+   N + +S+K        K N  YFE SAK   N    F  +A+
Sbjct: 121 VVCANKIDIK--NRQKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 6/160 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D D+ P +++GNK D+
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 122
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           +  + RVV +++ +       N  + E+SAK  INV E F
Sbjct: 123 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y  T+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +F  L   +Y  A C ++++DV S  ++ N+ NW  + L++      +N P V+ GNK+D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           +     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 71
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 128
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
            D++      V E K R   A + N+ Y ETSAK   NV++ F
Sbjct: 129 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 168

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 25/186 (13%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+++GD G GKTSL+  + +  F   Y  T+   ++   +Q + +   L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNF----PFVVL 123
            +  L   FY  A   +L +DV S  SFDN+ N W  E          ++F    P +V+
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV---------NHFCKKVPIIVV 144
Query: 124 GNKIDVDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
           G K D+    S V          V+  + +    S G + Y E SA+   NV   FQ  A
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
Query: 174 KNALKS 179
           + AL S
Sbjct: 205 EVALSS 210

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 75
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 76  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 132
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
            D++      V E K R   A + N+ Y ETSAK   NV++ F
Sbjct: 133 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 5   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 63
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 64  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 120
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
            D++      V E K R   A + N+ Y ETSAK   NV++ F
Sbjct: 121 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 160

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 61
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 118
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
            D++      V E K R   A + N+ Y ETSAK   NV++ F
Sbjct: 119 SDLEDKRQVSVEEAKNR---ADQWNVNYVETSAKTRANVDKVF 158

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 13/185 (7%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V  + ++  L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNK 126
           E +  L    YRGAD  VL + + S  S++N L  W  E L + +P    N P V++G K
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAP----NVPIVLVGTK 122
Query: 127 IDV--DGG----NSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           +D+  D G    ++ V++  +        G   Y E S+K   NV+  F    K  L+  
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182
Query: 181 EEEEI 185
             +E+
Sbjct: 183 RRKEV 187

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 15/186 (8%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPR 200
           +A+    S G IPY ETSAK    VE+AF  + +  ++  +  ++  PD       S P 
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVRE-IRQHKLRKLNPPD------ESGPG 180
Query: 201 SSGCEC 206
              C+C
Sbjct: 181 CMSCKC 186

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +  +  L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 7/163 (4%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG
Sbjct: 5   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 63
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
            E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 64  LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 120
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
            D++      V E K R   A + N+ Y ETSAK   NV++ F
Sbjct: 121 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 160

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 135
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 136 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 168

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI   +  K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K +L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    SR V  K
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           +A+    S G IP+ ETSAK    V++AF  + +   K  E+
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    SR V  K
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           +A+    S G IP+ ETSAK    V++AF  + +   K  E+
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F  +Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GN+ D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNRCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  +I  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 134
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 135 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 167

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  +I  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG+E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F +++  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTA QE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTA QE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE   ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q++   F + Y  TI  D  TK    +     L I DTAGQE F ++   + R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
               +LV+ +N  +SF+ +     + L      D D+FP V++GNK D++  + R V   
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQIL---RVKDRDDFPVVLVGNKADLE--SQRQVPRS 135
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 183
           +A A+ AS  ++ YFE SAK  +NV+EAF+ + +   K  E+E
Sbjct: 136 EASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 47/212 (22%)
Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ------------- 51
           +++  K ++LG+S VGK+S++ +     F      TIGA F T  V              
Sbjct: 4   KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNE 63
Query: 52  ----------------------FEDRLFTLQ--IWDTAGQERFQSLGVAFYRGADCCVLV 87
                                 + + L  ++  IWDTAGQER+ S+   +YRGA C ++V
Sbjct: 64  KNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVV 123
Query: 88  YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA 147
           +D+++  + D    W  +  I +      N+  +++ NKID +     ++  +K     A
Sbjct: 124 FDISNSNTLDRAKTWVNQLKISS------NYIIILVANKIDKNKFQVDILEVQKY----A 173
Query: 148 SKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
              N+ + +TSAK G N++  F  +A+   K+
Sbjct: 174 QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 8/162 (4%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    SR V  K
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL---PSRTVDTK 146
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           +A+    S G IP+ ETSAK    V++AF  + +   K  E+
Sbjct: 147 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           +  LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTA
Sbjct: 21  KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTA 79
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLG 124
           GQE +  L    Y  +D  +L + VN+  SFDN++  W  E          D    V++G
Sbjct: 80  GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-----KHYIDTAKTVLVG 134
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ----CIAKN 175
            K+D+    S  V++++    C   G + Y E S+   I + E F+    CI  N
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF ++N +RE+        D D+ P V++GNK D+    +R V  K
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDLP---TRTVDTK 146
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A     S G IP+ ETSAK    VE+AF  + +
Sbjct: 147 QAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 179

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q++   F   Y  TI  D  TK+   +DR   L I DTAGQE F ++   + R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTI-EDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  +LV+ V    SF+ +  ++ + L      D D FP +++GNK D+D  + R V+++
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADLD--HQRQVTQE 131
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           + +   A +  + Y E SAK  +NV++AF  + +   K  E+
Sbjct: 132 EGQ-QLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQ 172

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F + Y  TI   +L K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILD 69
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE-GINVEEAFQCIAK 174
           +++ NK+D+   + R V+  + +   A+K NIPY ETSAK+  +NV++ F  + +
Sbjct: 127 ILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y  +D  +L + VN+  SFDN++  W  E          D    V++G K+
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-----KHYIDTAKTVLVGLKV 136
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ----CIAKN 175
           D+    S  V++++    C   G + Y E S+   I + E F+    CI  N
Sbjct: 137 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F  +Y  TI   +L K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILD 69
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE-GINVEEAFQCIAK 174
           +++ NK+D+   + R V+  + +   A+K NIPY ETSAK+  +NV++ F  + +
Sbjct: 127 ILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 10/164 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E + ++   ++R  +  +LV+ +   +SF     +RE+ L     ++ D  P +V+GNK 
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL--RVKAEEDKIPLLVVGNKS 123
Query: 128 DVDGGNSRVVSEKKARA--WCASKGNIPYFETSAKEGINVEEAF 169
           D++      V E +++A  W      + Y ETSAK   NV++ F
Sbjct: 124 DLEERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F ++Y  TI  D   K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTI-EDSYRKHTEIDNQWAILD 69
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE-GINVEEAFQCIAK 174
           +++ NK+D+   + R V+  + +   A+K NIPY ETSAK+  +NV++ F  + +
Sbjct: 127 ILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E + ++   ++R  +  +LV+ +   +SF     +RE+ L     ++ D  P +V+GNK 
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL--RVKAEEDKIPLLVVGNKS 119
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           D++      V E +++   A +  + Y ETSAK   NV++ F
Sbjct: 120 DLEERRQVPVEEARSK---AEEWGVQYVETSAKTRANVDKVF 158

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F   Y  TI   +L K  + +++   L 
Sbjct: 6   VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILD 64
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 65  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 121
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE-GINVEEAFQCIAK 174
           +++ NK+D+   + R V+  + +   A+K NIPY ETSAK+  +NV++ F  + +
Sbjct: 122 ILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++   TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
            +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKSDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT ++  Y    F   Y  T+  +F +  V  +     L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNK 126
           E +  L    YRGAD  +L + + S  S++N++  W  E L   +P      P V++G K
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPE-LKHYAP----GIPIVLVGTK 119
Query: 127 IDV--------DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +D+        D   +  ++  +        G + Y E S+K   NV+  F    + AL+
Sbjct: 120 LDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALR 179

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 15/184 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV+ILG   VGKTSL +Q+V  +FS  Y  T+   + +K V      F L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +  L  +F  G    VLVY V S+ SF  + +  ++             P V++GNK D+
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL---HEGHGKTRVPVVLVGNKADL 141
Query: 130 DGGN--SRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF----QCIAKNALKSGEEE 183
                   V  +K A +W A+     + E+SA+E    +  F    Q IA+     G+E 
Sbjct: 142 SPEREVQAVEGKKLAESWGAT-----FMESSARENQLTQGIFTKVIQEIARVENSYGQER 196
Query: 184 EIYL 187
             +L
Sbjct: 197 RCHL 200

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 1   MP-SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTL 59
           MP S+ R   K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + L
Sbjct: 1   MPQSKSR---KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHL 56
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
           Q+ DTAGQ+ +      +    +  +LVY V S+KSF+ +     + L           P
Sbjct: 57  QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIP 113
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
            +++GNK D+     RV+S ++ +A  A   N  + E+SAKE     + F+ I   A K
Sbjct: 114 IMLVGNKKDLH--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP  +    K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ
Sbjct: 1   MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQ 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQ+ +      +    +  +LVY V S+KSF+ +     + L           P 
Sbjct: 58  LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPI 114
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +++GNK D+     RV+S ++ +A  A   N  + E+SAKE     + F+ I   A K
Sbjct: 115 MLVGNKKDLH--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +      +    +  +LVY V S+KSF+ +     + L           P +++GNK D+
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 118
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
                RV+S ++ +A  A   N  + E+SAKE     + F+ I   A K
Sbjct: 119 H--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 164

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V  +     L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNK 126
           E +  L    YRGAD  +L + + S  S++N+   W  E L   +P      P +++G K
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
Query: 127 ID--------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +D        +D   +  ++  +        G+  Y E S+K   NV+  F    K  L+
Sbjct: 120 LDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQ 179

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+  D   + +  +  + TLQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSHQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++           +LVY + S +S + L    E+  I     D ++ P +++GNK   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNK--C 119
Query: 130 DGGNSRVV----SEKKARAW-CASKGNIPYFETSAKEGINVEEAFQ 170
           D   SR V    +E  AR W CA      + ETSAK   NV+E FQ
Sbjct: 120 DESPSREVQSSEAEALARTWKCA------FMETSAKLNHNVKELFQ 159

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V        L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNK 126
           E +  L    YRGAD  +L + + S  S++N++  W  E L   +P      P V++G K
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIVLVGTK 121
Query: 127 ID--------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +D        +D   +  ++  +        G   Y E S+K   NV+  F    +  L+
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 179 S 179
           +
Sbjct: 183 A 183

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 69
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 124
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
Query: 179 S 179
           +
Sbjct: 185 A 185

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 66
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 121
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
Query: 179 S 179
           +
Sbjct: 182 A 182

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 179 S 179
           +
Sbjct: 181 A 181

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 68
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 123
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
Query: 179 S 179
           +
Sbjct: 184 A 184

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 179 S 179
           +
Sbjct: 183 A 183

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E +  L    Y   D  ++ + V +  SF N+   +EE++ +     P N PF+++G +I
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPFLLIGTQI 132
Query: 128 DV--DGGNSRVVSEKKARAWCASKGN 151
           D+  D      +++ K +  C  +G 
Sbjct: 133 DLRDDPKTLARLNDMKEKPICVEQGQ 158

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 179 S 179
           +
Sbjct: 183 A 183

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 66
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 121
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
Query: 179 S 179
           +
Sbjct: 182 A 182

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
           KV ++G++ VGK++L++ + +K  KF   Y  T G + +   V   D   +++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
           G + ++     ++ G    +LV+DV+SM+SF++   W  E L  A P        V++ N
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAVLVAN 140
Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA-KEGINVEEAFQCIAKNALKSGEEE 183
           K D+     +V  +  A+ W A+   + +F+ SA   G + +  F  IA    ++ E++
Sbjct: 141 KTDLPPQRHQVRLD-MAQDW-ATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDK 197

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 7/169 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F +    TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +      +    +  +LVY V S+KSF+ +     + L           P +++GNK D+
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 121
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
                RV+S ++ +A  A   N  + E+SAKE     + F+ I   A K
Sbjct: 122 H--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV I+G+   GK++L+++Y+   +  Q ++  G  F  KE+  + + + L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             Q     F    D  V V+ +    SF  + N+   FL   S  +    P V++G +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNY---FLRLCSFRNASEVPMVLVGTQDA 130
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           +   N RV+ + +AR          Y+ET A  G+NVE  FQ +A+  +
Sbjct: 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
               +LVY + + +SF ++   R++ +        +  P +++GNK+D++       SE 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           +A    A +   P+ ETSAK    V+E F  I + 
Sbjct: 132 RA---LAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 179 S 179
           +
Sbjct: 181 A 181

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +  L    Y   D  ++ + ++S    D+L N  E++  +     P N P +++GNK D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFXP-NVPIILVGNKKDL 141
Query: 130 --DGGNSRVVSEKKARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK 178
             D    R +++ K     + +G           Y E SAK    V E F+   +  L+
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 179 S 179
           +
Sbjct: 181 A 181

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 118
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 140
Query: 129 V--DGGNSRVVSEKKARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K     + +G           Y E SAK    V E F+   +  L+
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +       Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D   +R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 118
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S+    +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +W
Sbjct: 2   SKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLW 60
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFV 121
           DTAGQE +  L    Y   D  ++ + + S  SF+N+   W  E           N P +
Sbjct: 61  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPII 115
Query: 122 VLGNKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           ++G K+D+  D      + EKK          A     G + Y E SA
Sbjct: 116 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 119
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 17/166 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+ I G +GVGK++L+ +++ K+F  +Y  T+ + +   +   +D + +++I DTAGQE
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 87
Query: 69  -RFQSLGVAFYRGADCCVLVYDVNSMKSFDN---LNNWREEFLIQASPSDPDNFPFVVLG 124
              Q  G    R  +  VLVYD+    SF+    L N  +E         P N   +++G
Sbjct: 88  DTIQREG--HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVG 139
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-NVEEAF 169
           NK D+D  +SR VS ++     A++    ++E SA  G  N+ E F
Sbjct: 140 NKADLD--HSRQVSTEEGEK-LATELACAFYECSACTGEGNITEIF 182

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + R   LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQD 79
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNK- 126
            F  L    Y   D  +L + V S  SF N++  W  E       +     P +++G + 
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-----PIILVGTQS 134
Query: 127 ---------IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
                    I++D    + V E+ A+          Y E SA    N++E F
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 121 LRDDPSTI--EKLAK 133

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 128
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 129 LRDDPSTI--EKLAK 141

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 122 LRDDPSTI--EKLAK 134

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 119
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 120 LRDDPSTI--EKLAK 132

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 122 LRDDPSTI--EKLAK 134

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 126 LRDDPSTI--EKLAK 138

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKKARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K     + +G           Y E SAK    V E F+   +  L+
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    FS +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 127
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 128 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 121 LRDDPSTI--EKLAK 133

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 123 LRDDPSTI--EKLAK 135

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGLED 68
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P +++GNK D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 123
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  D    R +++ K         R      G   Y E SAK    V E F+   + AL+
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
Query: 179 S 179
           +
Sbjct: 184 A 184

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 17/181 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F    +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 K 178
           K
Sbjct: 178 K 178

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           +  L    Y   D  ++ + V+S    D+L N  E+++ +     P N P +++ NK D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSP---DSLENIPEKWVPEVKHFCP-NVPIILVANKKDL 141
Query: 130 DGGNS----------RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
                            V     RA         Y E SAK    V E F+   + AL+
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +V+ + R   L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA-DVEVDGRRVELALWDTAGQED 70
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKID 128
           +  L    Y  ++  ++ + ++   S +N+   W  E L           P +++G K+D
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-----GVPIILVGCKVD 125
Query: 129 VDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           +      +          V+ ++ ++     G   Y+E SAK G  V E F+   + +L
Sbjct: 126 LRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 136
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 137 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGK  L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 126 LRDDPSTI--EKLAK 138

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y   +  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   K  ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+   +E+++ + +   P   PF+++G +ID
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAR 143
           +    S +  EK A+
Sbjct: 123 LRDDPSTI--EKLAK 135

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L +V++LGD GVGKTSL + +  K+  + ++  +G D   + +  +    TL + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68  ERFQS--LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
           E+        +  +G    V+VY +    SF++ +  R +          D+ P +++GN
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL---RRTHQADHVPIILVGN 119
Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           K D+     R VS ++ RA CA   +  + ETSA    NV E F+
Sbjct: 120 KADL--ARCREVSVEEGRA-CAVVFDCKFIETSATLQHNVAELFE 161

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y       +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGK  L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 125 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           + P +++G K+
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKARAWCASKGNIPYFETSA 159
           D+      +          ++  +  A     G++ Y E SA
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  S++N+   W  E +    PS     P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKARAWCASKG--------NIPYFETSA 159
           D+  D      + EKK       +G        ++ Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           + P +++G K+
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKARAWCASKGNIPYFETSA 159
           D+      +          ++  +  A     G++ Y E SA
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           + P +++G K+
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 117
Query: 128 DVDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
           D+      +          ++  +  A     G++ Y E SA     ++  F
Sbjct: 118 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 120
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 121 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N+   W  E           N P +++G K+
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
           D+  D      + EKK          A     G + Y E SA
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  S++N+   W  E +    PS     P +++G K+
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 123
Query: 128 DV--DGGNSRVVSEKKARAWCASKG--------NIPYFETSA 159
           D+  D      + EKK       +G        ++ Y E SA
Sbjct: 124 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           + L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
           G E +  L    Y   D  ++ + + S  SF ++   W  E           N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
            K+D+  D      + EKK          A     G + Y E SA
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           + L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
           G E +  L    Y   D  ++ + + S  SF ++   W  E           N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
            K+D+  D      + EKK          A     G + Y E SA
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           + L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
           G E +  L    Y   D  ++ + + S  SF ++   W  E           N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
            K+D+  D      + EKK          A     G + Y E SA
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  S++N+   W  E +    PS     P +++G K+
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKKARAWCASKG--------NIPYFETSA 159
           D+  D      + EKK       +G        ++ Y E SA
Sbjct: 125 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166

>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
           L++ +LGD+  GK+SL+++++   +       S QYK         KE+  + +   + I
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
            + AG     +    F   AD  + V+ +    SF  ++    + L              
Sbjct: 59  REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
           ++G +  +   + RVV + +ARA CA      Y+ET A  G+NV+  FQ +A+  +   +
Sbjct: 113 LVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 EEEI 185
           ++++
Sbjct: 173 QQQL 176

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 19/146 (13%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
           K+ I+G++G GKT+L+ Q    K S+     AT+G D     +Q  D   R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVL 123
           AG+E F S    F       + VYD++  ++  D    W      +AS S     P +++
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 116
Query: 124 GNKIDVDGGNSRVVSEKKARAWCASK 149
           G  +D        VS++K R  C SK
Sbjct: 117 GTHLD--------VSDEKQRKACXSK 134

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 19/146 (13%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
           K+ I+G++G GKT+L+ Q    K S+     AT+G D     +Q  D   R   L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVL 123
           AG+E F S    F       + VYD++  ++  D    W      +AS S     P +++
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 118
Query: 124 GNKIDVDGGNSRVVSEKKARAWCASK 149
           G  +D        VS++K R  C SK
Sbjct: 119 GTHLD--------VSDEKQRKACXSK 136

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 36/181 (19%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFQSLGVAFY--------------RG-----ADCCVLVYDVNSMKSFDNLN-NWREEFLI 108
            +  L    Y              RG     AD  ++ + + S  SF+N+   W  E   
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 109 QASPSDPDNFPFVVLGNKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETS 158
                   N P +++G K+D+  D      + EKK          A     G + Y E S
Sbjct: 125 HCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 179
Query: 159 A 159
           A
Sbjct: 180 A 180

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 21  KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K+SL+ ++V   F + Y  TI  D   + +  +  + TLQI DT G  +F ++       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTI-EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81  ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
               +LV+ V S +S + L     + ++Q   S  D  P +++GNK D      R V  +
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIY-KLIVQIKGSVED-IPVMLVGNKCD---ETQREVDTR 134
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +A+A  A +    + ETSAK   NV+E FQ
Sbjct: 135 EAQA-VAQEWKCAFMETSAKMNYNVKELFQ 163

>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
           L++ +LGD+  GK+SL+++++   +       S QYK         KE+  + +   + I
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
            + AG     +    F   AD  + V+ +    SF  ++    + L              
Sbjct: 59  REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
           ++G +  +   + RVV + +ARA  A      Y+ET A  G+NV+  FQ +A+  +   +
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 EEEI 185
           ++++
Sbjct: 173 QQQL 176

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 88
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 110

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 109

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIW 62
           T  +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W
Sbjct: 5   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           +  G+  +  L     +  D  ++VY +    SF+  +  R +          ++ P ++
Sbjct: 65  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIIL 119
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           +GNK D+       VSE +A   CA   +  + ETSA    NV+E F+ I +  
Sbjct: 120 VGNKSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E 
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 121

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S +    K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
           DT+G   + ++    Y  +D  ++ +D++  ++ D+ L  W+ E 
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 126

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIW 62
           T  +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W
Sbjct: 36  TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           +  G+  +  L     +  D  ++VY +    SF+  +  R +          ++ P ++
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIIL 150
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           +GNK D+       VSE +A   CA   +  + ETSA    NV+E F+ I +  
Sbjct: 151 VGNKSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIW 62
           T  +V+++G+ GVGK++L N +     S +     +G D   + +  +     +  L +W
Sbjct: 5   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           +  G+  +  L     +  D  ++VY +    SF+  +  R +          ++ P ++
Sbjct: 65  ENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIIL 119
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           +GNK D+       VSE +A A      +  + ETSA    NV+E F+ I +  
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVF---DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIW 62
           T  +V+++G+ GVGK++L N +     S +     +G D   + +  +     +  L +W
Sbjct: 5   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           +  G+  +  L     +  D  ++VY +    SF+  +  R +          ++ P ++
Sbjct: 65  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIIL 119
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           +GNK D+       VSE +A A      +  + ETSA    NV+E F+ I +  
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVF---DXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG+SGVGK++L   +   +  N ++     D   + +  +    TL ++D   Q
Sbjct: 12  VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGN 125
                 L     +  D  ++V+ V   +SF  +     E L++     P +  P +++GN
Sbjct: 72  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPVILVGN 127
Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           K D+    SR VS ++ R    +  +  + ETSA    N  E F+
Sbjct: 128 KSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 169

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVN-------KKFSNQYKATIGADFLTKEVQFEDRLFTL 59
           ++ KV++LG  GVGK++L   +         +   + Y  +I  D        E  L   
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASLMVY 54
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
            IW+  G        +A     D  V+VY V    SF+  +  R +          D+ P
Sbjct: 55  DIWEQDGGRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQL---RRARQTDDVP 108
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
            +++GNK D+    SR VS  + RA CA   +  + ETSA    NV+  F+ + + 
Sbjct: 109 IILVGNKSDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 161

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVN-------KKFSNQYKATIGADFLTKEVQFEDRLFTL 59
           ++ KV++LG  GVGK++L   +         +   + Y  +I  D        E  L   
Sbjct: 6   SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASLMVY 59
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
            IW+  G        +A     D  V+VY V    SF+  +  R +          D+ P
Sbjct: 60  DIWEQDGGRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQL---RRARQTDDVP 113
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
            +++GNK D+    SR VS  + RA CA   +  + ETSA    NV+  F+ + + 
Sbjct: 114 IILVGNKSDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 166

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 7   TLLKVIILGDSGVGKTSLMNQYVN-------KKFSNQYKATIGADFLTKEVQFEDRLFTL 59
           ++ KV++LG  GVGK++L   +         +   + Y  +I  D        E  L   
Sbjct: 6   SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASLMVY 59
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
            IW+  G        +A     D  V+VY V    SF+  +  R +          D+ P
Sbjct: 60  DIWEQDGGRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQL---RRARQTDDVP 113
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
            +++GNK D+    SR VS  + RA CA   +  + ETSA    NV+  F+ + + 
Sbjct: 114 IILVGNKSDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 166

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +P   +  +++ ++G    GKT+ +N   + +FS     T+G  F  ++V   +   T++
Sbjct: 15  VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIK 70
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWD  GQ RF+S+   + RG +  V + D    +  +   N     L           P 
Sbjct: 71  IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLL---DKPQLQGIPV 127
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           +VLGNK D+          +K          I  +  S KE  N++   Q + +++
Sbjct: 128 LVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +P   +  +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T++
Sbjct: 15  VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIK 70
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           +WD  GQ RF+S+   + RG    V + D    +  +   N     L           P 
Sbjct: 71  LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL---DKPQLQGIPV 127
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           +VLGNK D+ G        +K          I  +  S KE  N++   Q + +++
Sbjct: 128 LVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 34/197 (17%)
Query: 11  VIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ G   VGK+S MN  V +  S  + Y  T   D + K ++    +  + + DT G +
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-TDPVYKSMELHP-IGPVTLVDTPGLD 94
Query: 69  RFQSLG--------VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
               LG          FYR ADC +LV D       D++ N  +E             PF
Sbjct: 95  DVGELGRLRVEKARRVFYR-ADCGILVTDSAPTPYEDDVVNLFKEM----------EIPF 143
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA--LK 178
           VV+ NKIDV G  +     ++ +    S+        SA +    ++ F  I K    + 
Sbjct: 144 VVVVNKIDVLGEKA-----EELKGLYESRYEAKVLLVSALQ----KKGFDDIGKTISEIL 194
Query: 179 SGEEEEIYLPDTIDVGN 195
            G+EE  YL D ID G+
Sbjct: 195 PGDEEIPYLGDLIDGGD 211

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 55
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R +SL   +YR  +  + V D N           RE      +  +  N  ++V  NK D
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELRNAAWLVFANKQD 112
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYF--ETSAKEGINVEEAFQCIAKNALKS 179
           +    S   +E   +    S  N P+F   T A  G  + E  + ++ N+LK+
Sbjct: 113 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 162

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R +SL   +YR  +  + V D N           RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEA---REVMQRMLNEDELRNAVWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYF--ETSAKEGINVEEAFQCIAKN 175
           +    S   +E   +    S  N P+F   T A  G  + E  + ++ N
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNN 176

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R +SL   +YR  +  + V D N           RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELRNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYF--ETSAKEGINVEEAFQCIAKNALKS 179
           +    S   +E   +    S  N P+F   T A  G  + E  + ++ N+LK+
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 179

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 87
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+   + RG    V + D    +  +   N     L           P +VLGNK D
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL---DKPQLQGIPVLVLGNKRD 144
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           + G        +K          I  +  S KE  N++   Q + +++
Sbjct: 145 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 192

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTL---QIW-- 62
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL    IW  
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 63  -DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPF 120
            D  G  R   L     +  D  ++V+ V   +SF  +     E L++     P +  P 
Sbjct: 83  GDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPV 133
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +++GNK D+    SR VS ++ R    +  +  + ETSA    N  E F+
Sbjct: 134 ILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 180

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGN 125
                 L     +  D  ++V+ V   +SF  +     E L++     P +  P +++GN
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPVILVGN 117
Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           K D+    SR VS ++ R   A   +  + ETSA    N  E F+
Sbjct: 118 KSDL--ARSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFE 159

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 22/183 (12%)
Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDT 64
           +T L+V++ G    GKT+++NQ    + S+++  AT+G +  T    FE       ++D 
Sbjct: 15  KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDM 70
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD-------- 116
            G ++F+ L   +Y   D  + V D     S D+L     +  IQA     D        
Sbjct: 71  GGAKKFRGLWETYYDNIDAVIFVVD-----SSDHLRLCVVKSEIQAMLKHEDIRRELPGG 125
Query: 117 -NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY--FETSAKEGINVEEAFQCIA 173
              PF+   NK+D  G  +      +        G+ P+  F ++  +G  V E F  + 
Sbjct: 126 GRVPFLFFANKMDAAGAKT-AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQ 184
Query: 174 KNA 176
           + A
Sbjct: 185 ETA 187

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKTS++ +    +       TIG  F  + V++++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +Y+     + V D N     D +   REE +   +  +  N   +V  NK D
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 129 VDGGNS-RVVSEK------KARAW-----CASKGNIPY 154
           +    S   V+EK      K R W     CA+ G+  Y
Sbjct: 130 LPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLY 167

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    K            F  + V+F +  FT  +WD  GQ+
Sbjct: 18  VRILMVGLDAAGKTTILYKV---KLGEVVTTIPTIGFNVETVEFRNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +Y   D  + V D N  +  D+    REE     +  +  +   +V  NK D
Sbjct: 73  KIRPLWRHYYSNTDGLIFVVDSNDRERIDDA---REELHRMINEEELKDAIILVFANKQD 129
Query: 129 VDGGNSRV-VSEK------KARAW-----CASKGNIPY 154
           +    S   V+EK      + R W     CA++G+  Y
Sbjct: 130 LPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLY 167

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--- 67
           + ILG  G GK++L  +++ K+F ++Y   +  D  + E   + +   L++ DTA     
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNL-EDTYSSEETVDHQPVHLRVMDTADLDTP 82
Query: 68  ---ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
              ER+ +   AF       ++VY V+S +SFD+ +++ E   + A  +   + P ++LG
Sbjct: 83  RNCERYLNWAHAF-------LVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLLG 134
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159
           NK+D+     R V++ +  A     G + +FE SA
Sbjct: 135 NKLDM--AQYRQVTKAEGVALAGRFGCL-FFEVSA 166

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  ++  S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 18  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
           + +    +++   D  + V D    K F+
Sbjct: 73  KIRPYWRSYFENTDILIYVIDSADRKRFE 101

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  ++  S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
           + +    +++   D  + V D    K F+
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFE 100

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q++  +  +    TIG++   +E+  ++  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSN--VEEIVVKNTHFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +S    +Y   +  +LV D     S D   L   +EE     +  D      ++  NK 
Sbjct: 73  LRSSWNTYYSNTEFIILVVD-----SIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ 127
Query: 128 DVDG 131
           D+ G
Sbjct: 128 DMKG 131

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV----------QFEDRLFT 58
           +KV ++GD   GKTSL+ Q + + F  +   T G + +TK+           + ++ LF 
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF- 100
Query: 59  LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF 118
              WD  GQE   +    F   +   +L+ D    ++  N + W          S     
Sbjct: 101 -HFWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKS----- 151
Query: 119 PFVVLGNKID 128
           P +V+ NKID
Sbjct: 152 PVIVVMNKID 161

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 128
Query: 129 VDGGNS----RVVSEK---KARAWC 146
           + G  S    R V E    ++  WC
Sbjct: 129 LPGALSSNAIREVLELDSIRSHHWC 153

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9  LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
          +++++LG    GKT+L+ Q  ++  S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 5  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
          + +    +++   D  + V D    K F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       TIG  F  + V +++  F  Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKNLKF--QVWDLGGQT 57
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y   D  + V D       D +   + E +      +      VV  NK D
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 114
Query: 129 VDG-------GNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           ++         N+  +   K R W         F+TSA +G  ++EA + + +  LKS
Sbjct: 115 MEQAMTPSEMANALGLPALKDRKW-------QIFKTSATKGTGLDEAMEWLVET-LKS 164

>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 51/184 (27%)
Query: 11  VIILGDSGVGKTSLMNQY----VNKKFSNQYKATIGA-------------DFLTKEVQFE 53
           V +LG    GKT+L++      V  + +      IGA             DFL K+    
Sbjct: 8   VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFL-KKFSIR 66
Query: 54  DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFL 107
           + L  L   DT G E F +L       AD  +L+ D+N      + ++ + L  +R    
Sbjct: 67  ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT--- 123
Query: 108 IQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167
                      PFVV  NKID            +   W   +G  P+ ET +K+ I V++
Sbjct: 124 -----------PFVVAANKID------------RIHGWRVHEGR-PFMETFSKQDIQVQQ 159
Query: 168 AFQC 171
Sbjct: 160 KLDT 163

>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 51/184 (27%)
Query: 11  VIILGDSGVGKTSLMNQY----VNKKFSNQYKATIGA-------------DFLTKEVQFE 53
           V +LG    GKT+L++      V  + +      IGA             DFL K+    
Sbjct: 8   VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFL-KKFSIR 66
Query: 54  DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFL 107
           + L  L   DT G E F +L       AD  +L+ D+N      + ++ + L  +R    
Sbjct: 67  ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRT--- 123
Query: 108 IQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167
                      PFVV  NKID            +   W   +G  P+ ET +K+ I V++
Sbjct: 124 -----------PFVVAANKID------------RIHGWRVHEGR-PFXETFSKQDIQVQQ 159
Query: 168 AFQC 171
Sbjct: 160 KLDT 163

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
           + G  S
Sbjct: 131 LPGALS 136

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
           + G  S
Sbjct: 131 LPGALS 136

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++  FT  +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 220
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
           + +  N+  +++K      + R W     CA+ G+  Y
Sbjct: 278 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++  FT  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 55
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
           + +  N+  +++K      + R W     CA+ G+  Y
Sbjct: 113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++  FT  +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 128
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
           + +  N+  +++K      + R W     CA+ G+  Y
Sbjct: 129 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 166

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
           + +  N+  +++K      + R W     CA+ G+  Y
Sbjct: 130 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 167

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 78
Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-116
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-111
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-110
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-90
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-85
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	7e-85
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-82
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-81
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-77
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-75
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-71
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	7e-70
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	9e-70
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-68
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-68
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-68
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-68
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-68
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-68
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-68
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	5e-68
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	6e-68
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	7e-68
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-68
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-67
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-67
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-67
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-67
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-67
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	5e-67
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-66
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-66
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-66
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-66
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-66
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-66
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-66
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-66
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	8e-66
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	9e-66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-65
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-65
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-65
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-64
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-64
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-64
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-63
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	4e-63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	9e-63
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-62
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-61
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-61
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-61
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-61
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	6e-61
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-61
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-60
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	7e-60
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-59
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-59
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-59
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-59
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-58
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-57
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-55
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-55
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-53
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-53
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-52
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	8e-44
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-40
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-38
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	8e-38
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-37
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-37
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-37
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-36
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	8e-36
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-35
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-33
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-33
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-31
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	5e-20
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-16
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	6e-16
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	8e-15
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	8e-15
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-14
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	4e-14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-13
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	5e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-09
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	5e-09
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	5e-07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	6e-07
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	7e-07
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	2e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	9e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-04
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	4e-04

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  328 bits (843), Expect = e-116
 Identities = 146/210 (69%), Positives = 171/210 (81%), Gaps = 7/210 (3%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK  
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query: 181 EEEEIY--LPDTIDVGNSSQP--RSSGCEC 206
            E E+Y   P+ I +  + +    +  C C
Sbjct: 178 TEVELYNEFPEPIKLDKNERAKASAESCSC 207

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  314 bits (807), Expect = e-111
 Identities = 90/179 (50%), Positives = 126/179 (70%), Gaps = 3/179 (1%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           + + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           DTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121

Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
           LGNKID+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +
Sbjct: 122 LGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED 177

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  312 bits (803), Expect = e-110
 Identities = 115/179 (64%), Positives = 146/179 (81%), Gaps = 2/179 (1%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
           M SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
           Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FP
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           FV+LGNKID +    ++VSEK A+    S G+IP F TSAK  INV+ AF+ IA++AL+
Sbjct: 121 FVILGNKIDAEESK-KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  260 bits (668), Expect = 4e-90
 Identities = 58/171 (33%), Positives = 102/171 (59%), Gaps = 8/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +       + P  ++ NKI
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKI 119

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D+   +   +  ++A    A +  + ++ TS KE +NV E F+ +A+  L+
Sbjct: 120 DLL--DDSCIKNEEAEGL-AKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  249 bits (639), Expect = 1e-85
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 10/180 (5%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
             +   LKV I+G+   GK++L+++Y+   +  +  +  G  F  KE+  + + + L I 
Sbjct: 15  YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIR 72

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           D  G    Q     F    D  V V+ +    SF  + N+        S  +    P V+
Sbjct: 73  DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC---SFRNASEVPMVL 124

Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           +G +  +   N RV+ + +AR          Y+ET A  G+NVE  FQ +A+  +   ++
Sbjct: 125 VGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  248 bits (636), Expect = 7e-85
 Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 8/188 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDRLFTLQIW--D 63
             KV ++G++ VGK++L++ + +K  KF   Y  T G + +   V   D   +++++  D
Sbjct: 20  RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLD 79

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
           TAG + ++     ++ G    +LV+DV+SM+SF++   W E  L  A P        V++
Sbjct: 80  TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFEL-LKSARPDRERPLRAVLV 138

Query: 124 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK-EGINVEEAFQCIAKNALKSGEE 182
            NK D+       V    A+ W  +   + +F+ SA   G + +  F  IA    ++ E+
Sbjct: 139 ANKTDLP-PQRHQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

Query: 183 EEIYLPDT 190
           +     D 
Sbjct: 197 KVAAFQDA 204

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  240 bits (616), Expect = 4e-82
 Identities = 39/183 (21%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
            R    L++ +LGD+  GK+SL+++++   +    + T   +   KE+  + +   + I 
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTES-EQYKKEMLVDGQTHLVLIR 59

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           + AG    +     F   AD  + V+ +    SF  ++    +                +
Sbjct: 60  EEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLS-SLRGEGRGGLALAL 113

Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           +G +  +   + RVV + +ARA  A      Y+ET A  G+NV+  FQ +A+  +   ++
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ 173

Query: 183 EEI 185
           +++
Sbjct: 174 QQL 176

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  240 bits (615), Expect = 2e-81
 Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 10/181 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E+F  L   +Y  A C ++++DV S  ++ N+ NW  + +        +N P V+ GNK+
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKV 129

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D+   + +V ++         K N+ Y++ SAK   N E+ F  +A+  +     E + +
Sbjct: 130 DIK--DRKVKAKSIV---FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 184

Query: 188 P 188
           P
Sbjct: 185 P 185

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  228 bits (585), Expect = 2e-77
 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAG 66
            LK+++LGD   GKTSL   +  + F  QYK TIG DF  + +     L  TLQIWD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GN 125
           Q     +   +  GA   +LVYD+ + +SF+NL +W     ++    + +  P V L GN
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV--VKKVSEESETQPLVALVGN 123

Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           KID++  + R +  +K   +C   G       SAK G +V   FQ +A   L 
Sbjct: 124 KIDLE--HMRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILG 173

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  224 bits (574), Expect = 3e-75
 Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 12/199 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-DFLTKEVQFEDRLFTLQIWDTAG 66
             K+ ++GD GVGKT+ +N+ ++ +F   Y AT+GA +     +  +  +    +WDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE+   L   +Y GA   +L +DV S  +  NL  W +EF            P VV  NK
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANK 126

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY 186
           ID+   N + +S+K          N  YFE SAK   N    F  +A+      +   + 
Sbjct: 127 IDIK--NRQKISKKLVMEV-LKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVS 183

Query: 187 ----LPDTIDVGNSSQPRS 201
                P  ++    S   S
Sbjct: 184 NVNLEPTEVNYDYHSPEES 202

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  212 bits (543), Expect = 5e-71
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 16/187 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWD 63
           +K++I+G++G GKT+L+ Q +  K S+     AT+G D     +Q  D   R   L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVV 122
            AG+E F S    F       + VYD++  ++  D +  W      +A      + P ++
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVIL 117

Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIP-----YFETSAKEGINVEEAFQCIAKNAL 177
           +G  +DV     R     K      +K   P     +F  + +E   + +  + I   +L
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177

Query: 178 KSGEEEE 184
                ++
Sbjct: 178 NFKIRDQ 184

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  211 bits (538), Expect = 7e-70
 Identities = 69/202 (34%), Positives = 109/202 (53%), Gaps = 10/202 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG 
Sbjct: 16  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 75

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK 
Sbjct: 76  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKT 131

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D+   + R VS ++     A + N+ + ETSAK G NV++ F+ +A         ++   
Sbjct: 132 DLA--DKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSR 188

Query: 188 PDTIDV---GNSSQPRSSGCEC 206
            D ID+       QP S G   
Sbjct: 189 EDMIDIKLEKPQEQPVSEGGCL 210

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  209 bits (534), Expect = 9e-70
 Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++GNKI
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKI 121

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           D++    R VS ++A ++ A      ++ TSAK+   +EE F  + K  +++
Sbjct: 122 DLE--KERHVSIQEAESY-AESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  206 bits (527), Expect = 1e-68
 Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +   D     +IWDTAGQ
Sbjct: 12  NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER+ SL   +YRGA   ++V+DV +  SF+    W +E   Q +P    N    + GNK 
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKS 127

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D+   ++R V+ + A+ + A +  + + ETSAK   NV+E F  IA+
Sbjct: 128 DLL--DARKVTAEDAQTY-AQENGLFFMETSAKTATNVKEIFYEIAR 171

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  206 bits (526), Expect = 2e-68
 Identities = 70/170 (41%), Positives = 104/170 (61%), Gaps = 7/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D+
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL 123

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
              N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+
Sbjct: 124 A--NKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  206 bits (526), Expect = 2e-68
 Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +     +P    N   +++GNK 
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKA 130

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           D++    R V+ ++A+ + A +  + + E SAK G NVE+AF   AK   ++
Sbjct: 131 DLE--AQRDVTYEEAKQF-AEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  207 bits (528), Expect = 2e-68
 Identities = 78/199 (39%), Positives = 117/199 (58%), Gaps = 18/199 (9%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--------- 58
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84

Query: 59  -LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A     +N
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCEN 141

Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
              V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE+A + +    +
Sbjct: 142 PDIVLIGNKADLP--DQREVNERQAREL-ADKYGIPYFETSAATGQNVEKAVETLLDLIM 198

Query: 178 K--SGEEEEIYLPDTIDVG 194
           K      E+  +PDT++ G
Sbjct: 199 KRMEQCVEKTQIPDTVNGG 217

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  206 bits (527), Expect = 2e-68
 Identities = 67/206 (32%), Positives = 117/206 (56%), Gaps = 14/206 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+         +++GNK 
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKC 123

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D+   + RVV    A+ + A    +P+ ETSA +  NVE+AF  +A+   +S  ++ +  
Sbjct: 124 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180

Query: 188 PD-------TIDVGNSSQPRSSGCEC 206
                     +++   S   + GC C
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCCC 206

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  206 bits (527), Expect = 3e-68
 Identities = 66/178 (37%), Positives = 103/178 (57%), Gaps = 7/178 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S +++++L  W  +    ASP    N   ++ GNK 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185
           D+D    R V+  +A  + A +  + + ETSA  G NVEEAF   A+  L   +  E+
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL 195

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  205 bits (524), Expect = 3e-68
 Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 7/171 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      P    +    + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCD 122

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           +   + R V E+ A+ + A   +  + ETSAK  IN+ E F  I++    +
Sbjct: 123 LT--DVREVMERDAKDY-ADSIHAIFVETSAKNAININELFIEISRRIPST 170

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  205 bits (524), Expect = 5e-68
 Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    +S     N   +++GNK 
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKS 136

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D++  + R V  ++  A+ A +  + + ETSAK   NVEEAF   AK
Sbjct: 137 DLE--SRRDVKREEGEAF-AREHGLIFMETSAKTACNVEEAFINTAK 180

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  205 bits (524), Expect = 6e-68
 Identities = 68/192 (35%), Positives = 113/192 (58%), Gaps = 7/192 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D+   + R V   +ARA+ A K N+ + ETSA +  NVEEAF+ I     +   +++I  
Sbjct: 121 DLR--HLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 177

Query: 188 PDTIDVGNSSQP 199
               D    +  
Sbjct: 178 RAAHDESPGNNV 189

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  205 bits (523), Expect = 7e-68
 Identities = 67/165 (40%), Positives = 90/165 (54%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAGQER
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F SL   +YRG+   V+VYD+    SF  L  W +E           N    + GNK D+
Sbjct: 85  FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDL 140

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
              + R V  K A+ + A        ETSAK  IN+EE FQ I++
Sbjct: 141 S--DIREVPLKDAKEY-AESIGAIVVETSAKNAINIEELFQGISR 182

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  205 bits (523), Expect = 7e-68
 Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 7/178 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW  +  + AS     N   ++ GNK 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKK 125

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185
           D+D    R V+  +A  + A +  + + ETSA  G NVEEAF   A+  L   E  E+
Sbjct: 126 DLD--ADREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  204 bits (522), Expect = 1e-67
 Identities = 67/179 (37%), Positives = 107/179 (59%), Gaps = 16/179 (8%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY 186
           D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I           EIY
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTILT---------EIY 191

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  203 bits (520), Expect = 2e-67
 Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQ
Sbjct: 14  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+SL  ++ R +   V+VYD+ +  SF   + W ++   +       +   +++GNK 
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKT 129

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D+   + R VS ++     A + N+ + ETSAK G NV++ F+ +A 
Sbjct: 130 DLS--DKRQVSTEEGER-KAKELNVMFIETSAKAGYNVKQLFRRVAA 173

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  204 bits (521), Expect = 2e-67
 Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 6/167 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GD+ VGKT ++ ++    FS +  +TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YR A+  +L YD+    SF ++ +W E+    A      N   +++GNK 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKS 144

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D+     R VS  +A++       +   ETSAK+  NVEEAF  +A 
Sbjct: 145 DLS--ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  203 bits (520), Expect = 2e-67
 Identities = 57/167 (34%), Positives = 98/167 (58%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A          +++GNK 
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKS 140

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D+    +R V  ++AR + A    + + ETSA +  NVE AF+ + K
Sbjct: 141 DLS--QAREVPTEEARMF-AENNGLLFLETSALDSTNVELAFETVLK 184

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  203 bits (519), Expect = 4e-67
 Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQ
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF S+  A+YR A   +LVYD+   ++FD+L  W +     AS     +   +++GNK+
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKL 141

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D +    R ++ ++   +      + + E SAK+  NV+E F  +  + LK
Sbjct: 142 DCE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  203 bits (518), Expect = 5e-67
 Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 15/196 (7%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF++L  ++YRGA   +LVYDV    +F  L+NW  E     + +D      +++GNKI
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND---IVNMLVGNKI 131

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D +   +R V   +   + A K ++ + E SAK    V+ AF+ + +  +++        
Sbjct: 132 DKE---NREVDRNEGLKF-ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT-------- 179

Query: 188 PDTIDVGNSSQPRSSG 203
           P   +  N +   SSG
Sbjct: 180 PGLWESENQNSGPSSG 195

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  202 bits (516), Expect = 1e-66
 Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 7/178 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    AS         V++GNKI
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKI 141

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185
           D+     R VS+++A  + +   ++ Y ETSAKE  NVE+ F  +A   +    +  +
Sbjct: 142 DLA--ERREVSQQRAEEF-SEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL 196

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  202 bits (515), Expect = 1e-66
 Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 7/175 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++++G+S VGKTS + +Y +  F+  + +T+G DF  K V   D+   LQIWDTAGQ
Sbjct: 22  MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF  + +W  +    +     DN   +++GNK 
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNKC 137

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           D++  + RVV  +  R   A      +FE SAKE INV++ F+ +     +   E
Sbjct: 138 DLE--DERVVPAEDGRRL-ADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  202 bits (515), Expect = 1e-66
 Identities = 65/171 (38%), Positives = 104/171 (60%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS     N   +++GNK 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKC 148

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D+     +VV    A+ + A    IP+ ETSAK   NVE++F  +A    K
Sbjct: 149 DLT--TKKVVDYTTAKEF-ADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  202 bits (515), Expect = 1e-66
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K+++ GD+ VGK+S + +    +F     AT+G DF  K +  +     LQ+WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  +++R AD  +L+YDV   KSF N+  W +     A        P +++GNK 
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKA 143

Query: 128 D----VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D          + V         A      + ETSAK+G N+ EA   +A+   K
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKL-AMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  201 bits (513), Expect = 2e-66
 Identities = 69/171 (40%), Positives = 106/171 (61%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS     +   ++LGNK 
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKC 123

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           DV+  + R VS+++     A    I + ETSAK  INVE AF  +A++   
Sbjct: 124 DVN--DKRQVSKERGEKL-ALDYGIKFMETSAKANINVENAFFTLARDIKA 171

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  200 bits (512), Expect = 2e-66
 Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 8/175 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++   +YRG    ++VYDV S +SF N+  W  E          D+   +++GNK 
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILVGNKN 123

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           D      +VV  + A  + A +  I  FETSAKE +NVEE F CI +  L++ ++
Sbjct: 124 DDP--ERKVVETEDAYKF-AGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD 175

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  200 bits (511), Expect = 3e-66
 Identities = 65/171 (38%), Positives = 102/171 (59%), Gaps = 8/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAGQ
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+         +++GNK 
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKS 118

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D++   +RVV+  +  A  A +  IP+ E+SAK   NV E F  +AK   +
Sbjct: 119 DME---TRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  201 bits (513), Expect = 5e-66
 Identities = 62/196 (31%), Positives = 116/196 (59%), Gaps = 7/196 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ ++ E +    QIWDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   ++VYD++   S++N N+W  E    A      N    ++GNK 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKS 128

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D+   + R V  ++++ + A +  + + ETSA    NV++AF+ +     +   + ++ L
Sbjct: 129 DLA--HLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL 185

Query: 188 PDTIDVGNSSQPRSSG 203
            D+   GN++   +  
Sbjct: 186 GDSSANGNANGASAPN 201

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  200 bits (510), Expect = 8e-66
 Identities = 59/175 (33%), Positives = 102/175 (58%), Gaps = 7/175 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K V   ++   LQIWDTAGQ
Sbjct: 23  MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W  +    +      N   +++GNK 
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKC 138

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           D++    RVV  +K +   A +    +FE SAKE I+V +AF+ +         +
Sbjct: 139 DME--EERVVPTEKGQLL-AEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  200 bits (511), Expect = 9e-66
 Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 8/196 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQ
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+         +++GNK 
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKS 135

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D++   +RVV+  +  A  A +  IP+ E+SAK   NV E F  +AK   +  +  ++  
Sbjct: 136 DME---TRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVG 191

Query: 188 PDTIDVGNSSQPRSSG 203
                 GN S    SG
Sbjct: 192 VGNGKEGNISINSGSG 207

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  199 bits (509), Expect = 1e-65
 Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 16/181 (8%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--------- 58
           L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +               
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70

Query: 59  -LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD- 129

Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
              V+ GNK D++  + R V E++AR   A K  IPYFETSA  G N+  A + +    +
Sbjct: 130 --IVLCGNKSDLE--DQRAVKEEEAREL-AEKYGIPYFETSAANGTNISHAIEMLLDLIM 184

Query: 178 K 178
           K
Sbjct: 185 K 185

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  199 bits (509), Expect = 1e-65
 Identities = 65/171 (38%), Positives = 104/171 (60%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS     N   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKC 131

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D+     +VV    A+ + A    IP+ ETSAK   NVE++F  +A    K
Sbjct: 132 DLT--TKKVVDYTTAKEF-ADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  199 bits (509), Expect = 1e-65
 Identities = 59/191 (30%), Positives = 104/191 (54%), Gaps = 7/191 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAG 
Sbjct: 8   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL 67

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W  +    +      N   +++GNK 
Sbjct: 68  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKC 123

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D++  + RVVS ++ R   A      +FE SAK+ INV++ F+ +     +   E     
Sbjct: 124 DME--DERVVSSERGRQL-ADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTA 180

Query: 188 PDTIDVGNSSQ 198
              +       
Sbjct: 181 DPAVTGAKQGP 191

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  196 bits (501), Expect = 1e-64
 Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 8/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+S+  A+YR A   +L+YDV +  SFDN+  W  E    A      +   ++LGNK
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNK 125

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +D    + RVV  +      A +  +P+ ETSAK G+NV+ AF  IAK   +
Sbjct: 126 VDSA--HERVVKREDGEKL-AKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  196 bits (500), Expect = 2e-64
 Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 10/171 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79

Query: 68  ERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           ERF +S+   +YR     V VYD+ +M SF +L  W EE       +D    P +++GNK
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVGNK 136

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIAK 174
            D+   ++  V    A+ + A   ++P FETSAK   +  +VE  F  +A 
Sbjct: 137 CDLR--SAIQVPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  196 bits (500), Expect = 2e-64
 Identities = 56/175 (32%), Positives = 99/175 (56%), Gaps = 8/175 (4%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +PS      K++++GD GVGK++L  Q+  K F + Y  TI  D   K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPM 126

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG-INVEEAFQCIAK 174
           +++ NK+D+   + R V+  + +   A+K NIPY ETSAK+  +NV++ F  + +
Sbjct: 127 ILVANKVDLM--HLRKVTRDQGKEM-ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  193 bits (493), Expect = 3e-63
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 7/168 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   Q
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82

Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
                 L     +  D  ++V+ V   +SF  +        ++A      + P +++GNK
Sbjct: 83  GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR--LRAG-RPHHDLPVILVGNK 139

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D+    SR VS ++ R   A   +  + ETSA    N  E F+   +
Sbjct: 140 SDLA--RSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFEGAVR 184

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  192 bits (490), Expect = 4e-63
 Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++   TI   +  K+V  +     L I DTAG
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNK 117

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D+    +R V  ++A+    S G IPY ETSAK    VE+AF  + +
Sbjct: 118 SDLA---ARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  191 bits (488), Expect = 9e-63
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 7/168 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
                 L     +  D  ++V+ V   +SF  +        ++A      + P +++GNK
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR--LRAG-RPHHDLPVILVGNK 118

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D+    SR VS ++ R   A   +  + ETSA    N  E F+   +
Sbjct: 119 SDLA--RSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFEGAVR 163

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  190 bits (486), Expect = 2e-62
 Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M        K++++G  GVGK++L  Q++   F + Y  TI  D  TK    +     L 
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLD 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           I DTAGQE F ++   + R     +LV+ +N  +SF+ +     + L      D D+FP 
Sbjct: 61  ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPV 117

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           V++GNK D++  + R V   +A A+  +  ++ YFE SAK  +NV+EAF+ + +   K  
Sbjct: 118 VLVGNKADLE--SQRQVPRSEASAF-GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174

Query: 181 EEEE 184
           E+E 
Sbjct: 175 EQEL 178

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  190 bits (483), Expect = 1e-61
 Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 47/210 (22%)

Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------- 55
           ++  K ++LG+S VGK+S++ +     F      TIGA F T  V   D           
Sbjct: 5   KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEK 64

Query: 56  ---------------------------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88
                                           IWDTAGQER+ S+   +YRGA C ++V+
Sbjct: 65  NNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124

Query: 89  DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS 148
           D+++  + D    W  +  ++ S     N+  +++ NKID +      V   + + + A 
Sbjct: 125 DISNSNTLDRAKTWVNQ--LKISS----NYIIILVANKIDKN---KFQVDILEVQKY-AQ 174

Query: 149 KGNIPYFETSAKEGINVEEAFQCIAKNALK 178
             N+ + +TSAK G N++  F  +A+   K
Sbjct: 175 DNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  188 bits (481), Expect = 2e-61
 Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 14/198 (7%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI   +  K+V  +     L I DTAG
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNK 118

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY 186
            D+    SR V  K+A+    S G IP+ ETSAK    V++AF  + +      E  +  
Sbjct: 119 CDLP---SRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVR------EIRKHK 168

Query: 187 LPDTIDVGNSSQPRSSGC 204
              + D     +   + C
Sbjct: 169 EKMSKDGKKKKKKSKTKC 186

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  188 bits (479), Expect = 2e-61
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+  D   + +  +  + TLQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++           +LVY + S +S + L    E+  I     D ++ P +++GNK D 
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNKCDE 121

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
               SR V   +A A  A      + ETSAK   NV+E FQ +  
Sbjct: 122 S--PSREVQSSEAEA-LARTWKCAFMETSAKLNHNVKELFQELLN 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  188 bits (479), Expect = 4e-61
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 11/206 (5%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP +     +V++ G  GVGK+SL+ ++V   F + Y  TI   +  + +  +  + TLQ
Sbjct: 2   MPEQSN-DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQ 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           I DT G  +F ++           +LV+ V S +S + L    +   I       ++ P 
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKL--IVQIKGSVEDIPV 117

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           +++GNK D      R V  ++A+A  A +    + ETSAK   NV+E FQ +     +  
Sbjct: 118 MLVGNKCDET---QREVDTREAQA-VAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN 173

Query: 181 EEEEIYLPDTIDVGNSSQPRSSGCEC 206
                   D    G   +      +C
Sbjct: 174 MSLN---IDGKRSGKQKRTDRVKGKC 196

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  186 bits (476), Expect = 6e-61
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 118

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D++  + R VS ++A+   A + N+ Y ETSAK   NV++ F  + +
Sbjct: 119 SDLE--DKRQVSVEEAKN-RADQWNVNYVETSAKTRANVDKVFFDLMR 163

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  187 bits (478), Expect = 7e-61
 Identities = 55/197 (27%), Positives = 101/197 (51%), Gaps = 7/197 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 72

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKS 129

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
           D++  + R VS ++A+   A + N+ Y ETSAK   NV++ F  + +       E+    
Sbjct: 130 DLE--DKRQVSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEK 186

Query: 188 PDTIDVGNSSQPRSSGC 204
                  + ++     C
Sbjct: 187 NGKKKRKSLAKRIRERC 203

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  185 bits (473), Expect = 3e-60
 Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 7/182 (3%)

Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
                 L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I
Sbjct: 12  SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDI 70

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
            DTAGQE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFL 127

Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
           ++GNK D++  + R VS ++A+   A + N+ Y ETSAK   NV++ F  + +       
Sbjct: 128 LVGNKSDLE--DKRQVSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184

Query: 182 EE 183
           E+
Sbjct: 185 ED 186

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  184 bits (469), Expect = 7e-60
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDL 120

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +  + R VS  + RA  A +   P+ ETSAK    V+E F  I +
Sbjct: 121 E--SEREVSSSEGRAL-AEEWGCPFMETSAKSKTMVDELFAEIVR 162

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  183 bits (466), Expect = 2e-59
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 6/166 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID- 128
           F SL   +YR A   ++VYDV   +SF    +W +E   QAS     +    ++GNKID 
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDX 120

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +  G  R V+ ++     A +  + +FETSAK G NV + F  I +
Sbjct: 121 LQEGGERKVAREEGEKL-AEEKGLLFFETSAKTGENVNDVFLGIGE 165

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  184 bits (469), Expect = 2e-59
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP  R    KV+ILG   VGKTSL +Q+V  +FS  Y  T+   + +K V      F L 
Sbjct: 19  MPLVR--YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLH 75

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQ+ +  L  +F  G    VLVY V S+ SF  + +  ++             P 
Sbjct: 76  LVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG---HGKTRVPV 132

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           V++GNK D+     R V   + +   A      + E+SA+E    +  F  + +
Sbjct: 133 VLVGNKADLS--PEREVQAVEGKK-LAESWGATFMESSARENQLTQGIFTKVIQ 183

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  183 bits (466), Expect = 2e-59
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MP  +    K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ
Sbjct: 1   MPQSKS--RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQ 57

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           + DTAGQ+ +      +    +  +LVY V S+KSF+ +     + L           P 
Sbjct: 58  LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPI 114

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +++GNK D+     RV+S ++ +A  A   N  + E+SAKE     + F+ I  
Sbjct: 115 MLVGNKKDLH--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIIL 165

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  182 bits (465), Expect = 2e-59
 Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 6/165 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI   +  K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDL 120

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +  + RVV +++ +       N  + E+SAK  INV E F  + +
Sbjct: 121 E--DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  181 bits (462), Expect = 6e-59
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 8/168 (4%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           ++ KV++LG  GVGK++L   +             G  +  + +  +    +L ++D   
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWE 58

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           Q+  + L        D  V+VY V    SF+  +  R + L +A     D+ P +++GNK
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRA--RQTDDVPIILVGNK 115

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            D+    SR VS  + RA CA   +  + ETSA    NV+  F+ + +
Sbjct: 116 SDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVR 160

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  181 bits (461), Expect = 2e-58
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  K++++G  GVGK++L  Q +   F ++Y  TI   +  K+V  +     L I DTAG
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAG 78

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QE + ++   + R  +  + V+ +N+ KSF ++N +RE+        D D+ P V++GNK
Sbjct: 79  QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK---DSDDVPMVLVGNK 135

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 184
            D+    +R V  K+A    A    IP+ ETSAK    VE+AF  + +   +   ++ 
Sbjct: 136 CDLP---TRTVDTKQAHEL-AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  178 bits (453), Expect = 2e-57
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L +V++LGD GVGKTSL + +  K+  + +   +G D   + +  +    TL + DT  
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWE 61

Query: 67  QERFQSLGV--AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
            E+        +  +G    V+VY +    SF++ +  R +          D+ P +++G
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT---HQADHVPIILVG 118

Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           NK D+     R VS ++ RA CA   +  + ETSA    NV E F+ + +
Sbjct: 119 NKADLA--RCREVSVEEGRA-CAVVFDCKFIETSATLQHNVAELFEGVVR 165

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  173 bits (441), Expect = 2e-55
 Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
            + ILG  G GK++L  +++ K+F ++Y   +   + + E   + +   L++ DTA  + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDT 81

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            ++    +   A   ++VY V+S +SFD+ +++ E   + A  +   + P ++LGNK+D+
Sbjct: 82  PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLLGNKLDM 139

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-NVEEAFQCIAK 174
                R V++ +  A  A +    +FE SA     +V+  F    +
Sbjct: 140 A--QYRQVTKAEGVAL-AGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  173 bits (441), Expect = 2e-55
 Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 11/175 (6%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M       +K+ I G +GVGK++L+ +++ K+F  +Y  T+ + +   +   +D + +++
Sbjct: 23  MAKSA--EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSME 79

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           I DTAGQE          R  +  VLVYD+    SF+ +   +           P N   
Sbjct: 80  ILDTAGQEDTIQRE-GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTL 135

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG-INVEEAFQCIAK 174
           +++GNK D+D  +SR VS ++     A++    ++E SA  G  N+ E F  + +
Sbjct: 136 ILVGNKADLD--HSRQVSTEEGEK-LATELACAFYECSACTGEGNITEIFYELCR 187

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  177 bits (451), Expect = 2e-53
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 19/191 (9%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV--------QFEDRLFTL 59
            +KV ++GD   GKTSL+ Q + + F  +   T G + +TK+           E +    
Sbjct: 41  EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
             WD  GQE   +    F   +   +L+ D    ++  N + W                P
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIEKYG-----GKSP 152

Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
            +V+ NKID +   S  + +KK      +  N  +   S K G  VE   + +    L  
Sbjct: 153 VIVVMNKIDEN--PSYNIEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVLHP 209

Query: 180 GEEEEIYLPDT 190
                  L  +
Sbjct: 210 DSIYGTPLAPS 220

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  168 bits (427), Expect = 5e-53
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIW 62
           T  +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W
Sbjct: 36  TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           +  G+  +  L     +  D  ++VY +    SF+  +  R +          ++ P ++
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIIL 150

Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +GNK D+     R VS  + RA CA   +  + ETSA    NV+E F+ I +
Sbjct: 151 VGNKSDLV--RCREVSVSEGRA-CAVVFDCKFIETSAAVQHNVKELFEGIVR 199

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  164 bits (418), Expect = 7e-52
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDR---LFTLQIW 62
           T  +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W
Sbjct: 5   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
           +  G+  +  L     +  D  ++VY +    SF+  +  R +          ++ P ++
Sbjct: 65  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIIL 119

Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +GNK D+     R VS  + RA  A   +  + ETSA    NV+E F+ I +
Sbjct: 120 VGNKSDLV--RXREVSVSEGRA-XAVVFDXKFIETSAAVQHNVKELFEGIVR 168

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  144 bits (364), Expect = 8e-44
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
               +  LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHL 75

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPF 120
           WDTAGQE +  L    Y  +D  +L + VN+  SFDN++  W  E +             
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPE-IKHYID----TAKT 130

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           V++G K+D+    S  V++++    C   G + Y E S+   I + E F+        
Sbjct: 131 VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  135 bits (341), Expect = 4e-40
 Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 22/211 (10%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   +   +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V  + ++  L 
Sbjct: 4   MSVSKF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLG 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDTAGQE +  L    YRGAD  VL + + S  S++N+   W  E           N P
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-----RFAPNVP 115

Query: 120 FVVLGNKID------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
            V++G K+D          ++ V++  +        G   Y E S+K   NV+  F    
Sbjct: 116 IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175

Query: 174 KNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 204
           K  L+    +E               R SGC
Sbjct: 176 KVVLQPPRRKE-------VPRRRKNHRRSGC 199

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  128 bits (324), Expect = 6e-38
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 17/187 (9%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M + R   +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V        L 
Sbjct: 3   MSASRF--IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDTAGQE +  L    YRGAD  +L + + S  S++N++  W  E L   +P      P
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVP 114

Query: 120 FVVLGNKID--------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC 171
            V++G K+D        +D   +  ++  +        G   Y E S+K   NV+  F  
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

Query: 172 IAKNALK 178
             +  L+
Sbjct: 175 AIRVVLQ 181

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  129 bits (326), Expect = 8e-38
 Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 17/182 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+++GD G GKTSL+  + +  F   Y  T+   +    +Q + +   L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L   FY  A   +L +DV S  SFDN+ N W  E +           P +V+G K 
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE-VNHFCK----KVPIIVVGCKT 148

Query: 128 D----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           D          +       V+  + +    S G + Y E SA+   NV   FQ  A+ AL
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

Query: 178 KS 179
            S
Sbjct: 209 SS 210

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  128 bits (324), Expect = 1e-37
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + R   LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQD 79

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            F  L    Y   D  +L + V S  SF N    W  E +    P      P +++G + 
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE-IRCHCP----KAPIILVGTQS 134

Query: 128 D----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           D          +D    + V E+ A+          Y E SA    N++E F       +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194

Query: 178 KSGEEEE 184
           +  + ++
Sbjct: 195 QYSDTQQ 201

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  128 bits (324), Expect = 1e-37
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 20/189 (10%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M + R+   K++I+GD   GKT L+  +   +F   Y  T+  +    +++ + +   L 
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELA 76

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDTAGQE +  L    Y   D  ++ + ++S  S +N+   W  E +    P    N P
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVP 131

Query: 120 FVVLGNKID----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
            +++GNK D          +       V  ++ R          Y E SAK    V E F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

Query: 170 QCIAKNALK 178
           +   +  L+
Sbjct: 192 EMATRAGLQ 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  127 bits (321), Expect = 3e-37
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 17/187 (9%)

Query: 2   PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
              +   +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +
Sbjct: 24  LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGL 82

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPF 120
           WDTAGQE +  L    Y   D  ++ + + S  SF+N    W  E +    P    N P 
Sbjct: 83  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPI 137

Query: 121 VVLGNKID----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
           +++G K+D          +       ++  +  A     G + Y E SA     ++  F 
Sbjct: 138 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

Query: 171 CIAKNAL 177
              +  L
Sbjct: 198 EAIRAVL 204

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  125 bits (316), Expect = 2e-36
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD   GKT L+  +   +F   Y  T+  ++   +++ + +   L +WDTAGQE
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 84

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + V+S  S +N+   W  E +    P    N P +++ NK 
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE-VKHFCP----NVPIILVANKK 139

Query: 128 D----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           D          +       V     RA         Y E SAK    V E F+   + AL
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199

Query: 178 KS 179
           + 
Sbjct: 200 QK 201

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  123 bits (310), Expect = 8e-36
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 17/181 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + + S  SF+N    W  E +    P    N P +++G K+
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 119

Query: 128 DV----------DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           D+                 ++  +  A     G + Y E SA     ++  F    +  L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

Query: 178 K 178
            
Sbjct: 180 C 180

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  121 bits (305), Expect = 6e-35
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 17/181 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQE
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127
            +  L    Y   D  ++ + V +  SF N    W  E L + +P    N PF+++G +I
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE-LKEYAP----NVPFLLIGTQI 132

Query: 128 D----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           D          ++    + +  ++ +      G   Y E SA     ++  F       L
Sbjct: 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192

Query: 178 K 178
            
Sbjct: 193 T 193

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  118 bits (298), Expect = 1e-33
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 18/190 (9%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   +    K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDT+G   + ++    Y  +D  ++ +D++  ++ D++   W+ E + +  P    N  
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 134

Query: 120 FVVLGNKID----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN-VEEA 168
            +++G K D          +       VS  +        G   Y E SA +  N V + 
Sbjct: 135 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194

Query: 169 FQCIAKNALK 178
           F       + 
Sbjct: 195 FHVATLACVN 204

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  117 bits (294), Expect = 2e-33
 Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 18/188 (9%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S +    K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFV 121
           DT+G   + ++    Y  +D  ++ +D++  ++ D++   W+ E + +  P    N   +
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKML 115

Query: 122 VLGNKID----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN-VEEAFQ 170
           ++G K D          +       VS  +        G   Y E SA +  N V + F 
Sbjct: 116 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175

Query: 171 CIAKNALK 178
                 + 
Sbjct: 176 VATLACVN 183

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  118 bits (297), Expect = 3e-33
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 71/224 (31%)

Query: 15  GDSGVGKTSLMNQYVNKK---FSNQYKATIG-ADFLTKEVQFEDRL-------------- 56
           G  G+GK+ L N++V      F   + + +  +DF  + V  +  L              
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 57  FTLQIW-------DTAGQERFQSLGVAFYRGA---------------------------- 81
             + I        D   Q    +    + + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 82  ---------DCCVLVYDV--NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130
                    D  +L  DV     ++FD+   +      Q         P VV+  K D  
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AKTKKPIVVVLTKCDEG 211

Query: 131 GGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
               R + +  A  +  SK N+   ETSA+  +NV+ AF  + +
Sbjct: 212 --VERYIRD--AHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  116 bits (293), Expect = 5e-33
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 18/189 (9%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-----------TIGADFLTKEV- 50
           + R    K++  G    GKT+ + +++  K     K            T+  DFL  ++ 
Sbjct: 9   ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67

Query: 51  QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWRE-EFLIQ 109
           + +       ++   GQ  + +      RG D  V V D    +   N  + R     + 
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 110 ASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
                 D+ P V+  NK D+       +  +  RA    +G  P  E  A EG  V E  
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD----ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183

Query: 170 QCIAKNALK 178
           + +++  L 
Sbjct: 184 KEVSRLVLA 192

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  112 bits (281), Expect = 3e-31
 Identities = 36/182 (19%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127
            + ++    Y  +D  +L +D++  ++ D+    WR E ++   P    +   +++G K 
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-ILDYCP----STRVLLIGCKT 141

Query: 128 D----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG-INVEEAFQCIAKNA 176
           D          +       +S ++  A     G   Y E SA     ++   F+  +   
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201

Query: 177 LK 178
           L 
Sbjct: 202 LN 203

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 85.4 bits (211), Expect = 5e-20
 Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 17/189 (8%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +    + L+K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L 
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLG 206

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFP 119
           +WDTAG E +  L    Y   D  ++ + + S  SF ++   W  E +    P    N P
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE-VRHHCP----NTP 261

Query: 120 FVVLGNKID----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
            +++G K+D          +       ++  +  A     G + Y E SA     ++  F
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

Query: 170 QCIAKNALK 178
               +  L 
Sbjct: 322 DEAIRAVLC 330

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 80.4 bits (198), Expect = 2e-18
 Identities = 39/193 (20%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA--DFLTKEVQFEDRLFTLQIWDTAGQ 67
           K++++G SG GK+S M   +   +S      +GA  D     ++F   + TL +WD  GQ
Sbjct: 5   KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNM-TLNLWDCGGQ 62

Query: 68  ERF-----QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWRE--EFLIQASPSDPDNFPF 120
           + F            ++     + V+DV S +   ++  + +  + L + SP    +   
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP----DAKI 118

Query: 121 VVLGNKIDVDGGNSR------VVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
            VL +K+D+   + R      ++      +      N+  F TS  +  ++ +A+  I  
Sbjct: 119 FVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVC 177

Query: 175 NALKSGEEEEIYL 187
           + + +    +  L
Sbjct: 178 SLIPNMSNHQSNL 190

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 21/177 (11%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+   + RG    V + D       + +   + E             P +VLGNK D
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           + G  + + + EK      + R  C        +  S KE  N++   Q + +++  
Sbjct: 136 LPGALDEKELIEKMNLSAIQDREIC-----C--YSISCKEKDNIDITLQWLIQHSKS 185

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 73.5 bits (180), Expect = 2e-16
 Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 25/179 (13%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++++G    GK+S+     +K   N+    ++T        ++         QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISN-SSFVNFQIWDFPG 78

Query: 67  QERFQSLGV---AFYRGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFV 121
           Q  F          +RG    + V D     M++   L+    +   + +P    +  F 
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNP----DMNFE 133

Query: 122 VLGNKIDVDGGNSRVVS----EKKARAWCASKG----NIPYFETSAKEGINVEEAFQCI 172
           V  +K+D    + ++ +     ++A    A  G    ++ ++ TS  +  ++ EAF  +
Sbjct: 134 VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKV 191

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 71.1 bits (175), Expect = 6e-16
 Identities = 33/177 (18%), Positives = 74/177 (41%), Gaps = 22/177 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++   +  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDVGGQD 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +    N+  +++K      + R W           T A  G  + E    ++     
Sbjct: 113 LPNAMNAAEITDKLGLHSLRHRNWY-------IQATCATSGDGLYEGLDWLSNQLRN 162

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 68.4 bits (168), Expect = 8e-15
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++ILG  G GKT+++ +    +     K TIG  F  + + +++    L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y      + V D       D ++   +E  +     +  +   +V  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
             G  ++  VS++      K R+W           +SA +G  + E    +     + 
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWS-------IVASSAIKGEGITEGLDWLIDVIKEE 181

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 68.9 bits (169), Expect = 8e-15
 Identities = 30/179 (16%), Positives = 70/179 (39%), Gaps = 26/179 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++      +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ICFTVWDVGGQD 84

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNK 126
           + + L   +++     + V D     S D   +    +E        +  +   +V  NK
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVD-----SNDRERVQESADELQKMLQEDELRDAVLLVFANK 139

Query: 127 IDVDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
            D+        +++K      ++R W           T A +G  + +    ++    K
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWY-------VQATCATQGTGLYDGLDWLSHELSK 191

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 22/179 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++V++LG    GKTS++ +            T+G     + +Q+++   + ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVG--VNLETLQYKN--ISFEVWDLGGQT 77

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     ++   D  + V D       D +   + E        +      ++  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           +    +   ++E+        R W          ++S+K G  + E    + +   + G
Sbjct: 135 LPDAASEAEIAEQLGVSSIMNRTWT-------IVKSSSKTGDGLVEGMDWLVERLREQG 186

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +    TIG     +E+   +      +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           V        +S+       K   W             A  G  + +  + +   
Sbjct: 129 VKECMTVAEISQFLKLTSIKDHQWH-------IQACCALTGEGLCQGLEWMMSR 175

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +    TIG     +E+   +      +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 76

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           V        +S+       K   W             A  G  + +  + +   
Sbjct: 134 VKECMTVAEISQFLKLTSIKDHQWH-------IQACCALTGEGLCQGLEWMMSR 180

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       TIG  F  + V +++     Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y   D  + V D       D +   + E +      +      VV  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           ++    S  ++        K R W         F+TSA +G  ++EA + + +    
Sbjct: 120 MEQAMTSSEMANSLGLPALKDRKWQ-------IFKTSATKGTGLDEAMEWLVETLKS 169

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++  +        T+G  F  K ++     F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D         + + + E               ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           + G  +   + E       ++  W            SA  G ++      +  +   
Sbjct: 131 LPGALSCNAIQEALELDSIRSHHWR-------IQGCSAVTGEDLLPGIDWLLDDISS 180

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 28/185 (15%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQY-VNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
            R    + V+ LG    GKT+++N+   +   S     TIG  F  ++ +      +  +
Sbjct: 16  PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTV 71

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEF--LIQASPSDPDN 117
           +D +GQ R+++L   +Y+     + V D     S D   +   +EE   L+         
Sbjct: 72  FDMSGQGRYRNLWEHYYKEGQAIIFVID-----SSDRLRMVVAKEELDTLLNHPDIKHRR 126

Query: 118 FPFVVLGNKIDVDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQ 170
            P +   NK+D+     S  VS+       K + W           + A +G  ++E   
Sbjct: 127 IPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH-------ICASDAIKGEGLQEGVD 179

Query: 171 CIAKN 175
            +   
Sbjct: 180 WLQDQ 184

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  ++  S+    T G  F  K VQ +   F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQR 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + +    +++   D  + V D              +E             P ++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           +     +  ++E       + R W            SA  G  V++    + KN    
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQ-------IQSCSALTGEGVQDGMNWVCKNVNAK 179

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 38/188 (20%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   + +   Q+  T+     ++E+       T   +D  G  
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG--MTFTTFDLGGHI 80

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNK 126
           + + +   +    +  V + D       D+  L   +EE     +     N P ++LGNK
Sbjct: 81  QARRVWKNYLPAINGIVFLVD-----CADHERLLESKEELDSLMTDETIANVPILILGNK 135

Query: 127 IDV-------------------DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167
           ID                     G  S  + E  AR           F  S  +     E
Sbjct: 136 IDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV-------FMCSVLKRQGYGE 188

Query: 168 AFQCIAKN 175
            F+ +A+ 
Sbjct: 189 GFRWMAQY 196

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   N + +   + T      ++E+   +       +D  G  
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFDLGGHI 78

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNK 126
           + + L   ++   +  V + D     + D    +  R E     + ++  + PFV+LGNK
Sbjct: 79  QARRLWKDYFPEVNGIVFLVD-----AADPERFDEARVELDALFNIAELKDVPFVILGNK 133

Query: 127 IDVDGGNSRV-VSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           ID     S   +                 +  +  F  S        EAFQ +++ 
Sbjct: 134 IDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 11/134 (8%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
                   +II G    GKTSL+              +           ++    TL   
Sbjct: 43  GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQEP---LSAADYDGSGVTL--V 96

Query: 63  DTAGQERFQSLGVAFYRGA--DCCVLVYDVNSMKSFDNLNNWREEF---LIQASPSDPDN 117
           D  G  + +     + +        L++ V+S      L    E     L     S  + 
Sbjct: 97  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156

Query: 118 FPFVVLGNKIDVDG 131
              ++  NK ++  
Sbjct: 157 IDILIACNKSELFT 170

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 11/134 (8%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
            ++     +II G    GKTSL+         +  + T+ +        ++    TL   
Sbjct: 7   KQKSYQPSIIIAGPQNSGKTSLLTLLTT----DSVRPTVVSQEPLSAADYDGSGVTL--V 60

Query: 63  DTAGQERFQSLGVAFYRGA--DCCVLVYDVNSMKSFDNLNNWREEF---LIQASPSDPDN 117
           D  G  + +     + +        L++ V+S      L    E     L     S  + 
Sbjct: 61  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120

Query: 118 FPFVVLGNKIDVDG 131
              ++  NK ++  
Sbjct: 121 IDILIACNKSELFT 134

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 15/136 (11%)

Query: 3   SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQI 61
           +R+ +   V+ +G    GKT L  + +  ++ +    +I     +   +   +R  +L +
Sbjct: 2   ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTL 58

Query: 62  WDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWRE--EFL---IQASPSDP 115
            D  G E     L   F   A   V V D     S       ++  EFL   +  S +  
Sbjct: 59  IDLPGHESLRFQLLDRFKSSARAVVFVVD-----SAAFQREVKDVAEFLYQVLIDSMALK 113

Query: 116 DNFPFVVLGNKIDVDG 131
           ++   ++  NK D+  
Sbjct: 114 NSPSLLIACNKQDIAM 129

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 25/177 (14%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED--RLFTLQIWDTAGQE 68
           V+++G    GK+S + + V           + +   T     E    L  L + +  GQ 
Sbjct: 2   VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLES---TSNPSLEHFSTLIDLAVMELPGQL 57

Query: 69  RFQSLGV---AFYRGADCCVLVYDVNSMKSFDNLNNWRE--EFLIQASPSDPDNFPFVVL 123
            +          ++     V V D    +  + + N     E+  + +P    +    VL
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDS-QDEYINAITNLAMIIEYAYKVNP----SINIEVL 112

Query: 124 GNKIDVDGGNSRVVSEK----KARAWCASKG----NIPYFETSAKEGINVEEAFQCI 172
            +K+D    + +V +++    +        G     + ++ TS  +  ++ EAF  I
Sbjct: 113 IHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRI 168

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 47/201 (23%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           +  +I G    GK++L+N  + ++     +A I     G   D++ +    +      ++
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQE-----RA-IVSHMPGTTRDYIEECFIHDK--TMFRL 285

Query: 62  WDTAGQ-------ERFQSLGVAFYR------GADCCVLVYDVNSMKSFDNLNNWREEFLI 108
            DTAG        E     G+   R       AD  + + D+ + +  D L   RE  L 
Sbjct: 286 TDTAGLREAGEEIEH---EGIR--RSRMKMAEADLILYLLDLGTERLDDELTEIRE--LK 338

Query: 109 QASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168
            A P       F+ + NK+D       ++                    SA  G  ++  
Sbjct: 339 AAHP----AAKFLTVANKLDRAANADALIRAIA------DGTGTEVIGISALNGDGIDTL 388

Query: 169 FQCIAKNALKSGE--EEEIYL 187
            Q +        +  E  + +
Sbjct: 389 KQHMGDLVKNLDKLHEASVLV 409

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 44/193 (22%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           +KV+I G    GK+SL+N    ++      A I     G   D L + +  +     L I
Sbjct: 5   MKVVIAGRPNAGKSSLLNALAGRE-----AA-IVTDIAGTTRDVLREHIHIDG--MPLHI 56

Query: 62  WDTAGQ-------ERFQSLGV----AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQA 110
            DTAG        ER   +G+         AD  + + D  +  + D    W E      
Sbjct: 57  IDTAGLREASDEVER---IGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFI---- 109

Query: 111 SPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
               P   P  V+ NK D+ G    +          +          SA+ G  V+    
Sbjct: 110 -ARLPAKLPITVVRNKADITGETLGM----------SEVNGHALIRLSARTGEGVDVLRN 158

Query: 171 CIAKNALKSGEEE 183
            + ++       E
Sbjct: 159 HLKQSMGFDTNME 171

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 33/174 (18%), Positives = 74/174 (42%), Gaps = 22/174 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++   +  +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQD 220

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 277

Query: 129 VDGG-NSRVVSEK------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           +    N+  +++K      + R W           T A  G  + E    ++  
Sbjct: 278 LPNAMNAAEITDKLGLHSLRHRNWY-------IQATCATSGDGLYEGLDWLSNQ 324

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 31/189 (16%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +++ G   VGK+S MN  V +     S+   A    D + K ++    +  + + DT G 
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSD--YAGTTTDPVYKSMELHP-IGPVTLVDTPGL 93

Query: 68  ERFQSLG-------VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           +    LG          +  ADC +LV D            + ++ +           PF
Sbjct: 94  DDVGELGRLRVEKARRVFYRADCGILVTDSAP-------TPYEDDVVNLFKEM---EIPF 143

Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
           VV+ NKIDV G  +  +           +        SA +    ++  + I++      
Sbjct: 144 VVVVNKIDVLGEKAEELKGLYES-----RYEAKVLLVSALQKKGFDDIGKTISEIL---P 195

Query: 181 EEEEIYLPD 189
            +EEI    
Sbjct: 196 GDEEIPYLG 204

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 38/202 (18%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ---FEDRLF 57
           +P     +  V+I G   VGK++L+      K            F T+ +    FED  F
Sbjct: 160 LPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYP-----FTTRGINVGQFEDGYF 214

Query: 58  TLQIWDTAG------QERFQSLGVAFYRGAD-CCVLVY-------DVNSMKSFDNLNN-W 102
             QI DT G       ER +    A         +++Y           ++   +L    
Sbjct: 215 RYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV 274

Query: 103 REEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162
             EF          + PF+V+ NKIDV    +     K+   +   KG +   + SA +G
Sbjct: 275 HGEFK---------DLPFLVVINKIDVADEENI----KRLEKFVKEKG-LNPIKISALKG 320

Query: 163 INVEEAFQCIAKNALKSGEEEE 184
             ++   + I K  L+   E+ 
Sbjct: 321 TGIDLVKEEIIK-TLRPLAEKV 341

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 32/260 (12%), Positives = 70/260 (26%), Gaps = 84/260 (32%)

Query: 5   RRTLLK------VIILGDSGVGKTSLMNQYVN-----KKFSNQ-YKATIGADFLTKEV-- 50
           R+ LL+      V+I G  G GKT +            K   + +   +      + V  
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 51  --------------QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC-CVL--VYDVNSM 93
                            D    +++   + Q   + L +      +C  VL  V +  + 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259

Query: 94  KSFD------------NLNNWREEFLIQASPSDPDNFPFV----------VLGNKID--- 128
            +F+             + ++           D  +               L  +     
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 129 --VDGGNSRVVS-------EKKARAWCASKGNIPYFETSAKEGINVEEAFQ-CIAKNALK 178
             V   N R +S       +  A  W         ++    +   +    +  +  N L+
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLAT-W-------DNWKHVNCD--KLTTIIESSL--NVLE 367

Query: 179 SGEEEEIY-----LPDTIDV 193
             E  +++      P +  +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHI 387

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 42/193 (21%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           L+++I+G   VGK++L+N+ +N+      +A I     G   D +++E+         +I
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNED-----RA-IVTDIPGTTRDVISEEIVIRG--ILFRI 295

Query: 62  WDTAGQERFQS------LGV----AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 111
            DTAG  R ++      LG+         AD  + V D +S    +      +  +++  
Sbjct: 296 VDTAGV-RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEE------DRKILERI 348

Query: 112 PSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC 171
                N  ++V+ NK+DV    +    + K         +    + SA +G  +E+  + 
Sbjct: 349 K----NKRYLVVINKVDVVEKINEEEIKNK------LGTDRHMVKISALKGEGLEKLEES 398

Query: 172 IAKNALKSGEEEE 184
           I +   +  E   
Sbjct: 399 IYRETQEIFERGS 411

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 30/195 (15%), Positives = 53/195 (27%), Gaps = 21/195 (10%)

Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR--LFTLQIW 62
             ++L V + G++G GK+S +N         +  A  G   +T E        +  +  W
Sbjct: 66  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 125

Query: 63  DTAG-----QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
           D  G           L    +   D  +++                 +            
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISA-------TRFKKNDIDIAKAI---SMMK 175

Query: 118 FPFVVLGNKIDVDGGNSRVVSEKK-ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
             F  +  K+D D  N      +   +        +    T  + GI     F    KN 
Sbjct: 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNV 235

Query: 177 LKSGEEEEIYLPDTI 191
                     L D +
Sbjct: 236 CHYDFPV---LMDKL 247

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 45/206 (21%), Positives = 70/206 (33%), Gaps = 37/206 (17%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQ---FEDRL 56
           +PS       +I+ G   VGK+S MN         Q Y       F TK +    F+ +L
Sbjct: 22  LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYS------FTTKNLYVGHFDHKL 75

Query: 57  FTLQIWDTAG------QER--FQSLGVAFYRGADCCVL-VYDVNSMKSFDN------LNN 101
              QI DT G      + R   +   +      +  +L + D++               +
Sbjct: 76  NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYS 135

Query: 102 WREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS--KGNIPYFETSA 159
            +  F          N   V+  NKID    +S  +  K          K  I +   S 
Sbjct: 136 IKSVFS---------NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFST 186

Query: 160 KEGINVEEAFQCIAKNALKSGEEEEI 185
             G+ VE+A        LK+ + E I
Sbjct: 187 LTGVGVEQAKITAC-ELLKNDQAESI 211

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 50/179 (27%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           LKV I+G   VGK+SL+N +         +A I     G   D +  ++        +Q+
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSD-----RA-IVTDLPGTTRDVVESQLVVGG--IPVQV 276

Query: 62  WDTAGQ-------ERFQSLGVAFYR------GADCCVLVYDVNSMKSFDNLNNWREEFLI 108
            DTAG        E+   +GV   R       AD  +L  D  +  +        ++ + 
Sbjct: 277 LDTAGIRETSDQVEK---IGVE--RSRQAANTADLVLLTIDAATGWTTG------DQEIY 325

Query: 109 QASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167
           +       + P +++ NKID+       V ++   +    +       T+A +   ++ 
Sbjct: 326 EQVK----HRPLILVMNKIDL-------VEKQLITSLEYPENITQIVHTAAAQKQGIDS 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.9
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.88
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.86
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.86
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.86
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.81
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.8
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.79
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.78
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.75
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.75
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.74
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.72
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.69
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.68
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.67
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.67
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.66
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.66
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.65
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.64
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.64
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.63
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.63
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.59
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.53
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.44
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.41
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.38
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.29
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.17
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.16
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.11
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.09
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.06
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.95
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.89
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.77
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.6
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.55
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.51
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.46
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.45
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.43
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.37
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.35
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.33
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.2
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.13
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.07
2xxa_A	433	Signal recognition particle protein; protein trans	97.94
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.83
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.68
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.62
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.58
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.53
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.46
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.46
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.44
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.42
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.41
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.41
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.4
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.4
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.4
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.39
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.39
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.38
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.37
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.37
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.35
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.31
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.31
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.3
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.28
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.28
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.27
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.27
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.27
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.26
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.26
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.26
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.25
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.25
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.24
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.23
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.22
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.22
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.21
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.21
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.2
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.19
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.19
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.19
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.17
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.16
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.15
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.15
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.15
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.15
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.15
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.15
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.14
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.14
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.13
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.13
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.13
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.12
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.12
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.12
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.12
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.12
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.11
1g6h_A	257	High-affinity branched-chain amino acid transport	97.11
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.11
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.11
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.11
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.1
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.1
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.1
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.09
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.09
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.09
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.09
3end_A	307	Light-independent protochlorophyllide reductase ir	97.08
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.08
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.08
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.07
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.07
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.07
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.06
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.06
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.06
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.06
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.05
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.05
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.05
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.05
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.04
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.04
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.04
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.03
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.03
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.03
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.03
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.02
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.02
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.01
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.01
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.0
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.99
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.98
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.98
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.98
1via_A	175	Shikimate kinase; structural genomics, transferase	96.97
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.96
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.96
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.96
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.94
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.94
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.94
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.93
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.93
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.93
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.92
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.91
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.9
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.89
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.88
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.87
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.87
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.86
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.86
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.86
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.85
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.85
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.85
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.85
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.84
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.84
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.84
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.84
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.84
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.83
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.83
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.82
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.82
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.82
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.82
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.81
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.81
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.79
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.79
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.79
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.76
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.76
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.76
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.76
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.76
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.75
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.75
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.75
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.75
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.74
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.74
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.73
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.72
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.68
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.66
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.64
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.63
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.63
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.62
2og2_A	359	Putative signal recognition particle receptor; nuc	96.62
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.61
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.61
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.61
3co5_A	143	Putative two-component system transcriptional RES	96.6
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.58
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.56
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.55
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.55
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.54
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.51
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.48
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.47
3bos_A	242	Putative DNA replication factor; P-loop containing	96.47
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.46
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.45
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.45
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.44
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.43
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.42
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.41
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.37
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.36
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.35
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.35
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.32
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.3
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.28
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.24
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.24
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.23
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.2
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.2
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.19
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.18
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.17
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.17
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.16
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.16
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.15
3uc9_A	233	Increased recombination centers protein 6; rossman	96.15
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.15
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.14
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.13
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.13
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.13
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.12
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.11
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.11
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.09
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.05
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.05
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.04
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.02
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.01
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.0
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.99
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.99
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.98
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.98
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.97
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.96
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.95
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.91
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.89
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.88
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.87
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.86
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.86
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.85
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.85
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.83
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.83
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.82
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.82
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.81
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.79
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.78
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.76
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.76
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.74
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.68
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.64
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.62
2qgz_A	308	Helicase loader, putative primosome component; str	95.59
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.58
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.57
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.56
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.55
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.55
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.55
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.54
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.53
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.5
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.49
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.48

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=7.1e-42  Score=246.95  Aligned_cols=194  Identities=34%  Similarity=0.609  Sum_probs=143.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.+||+|+|.+|||||||+++|+.+.|...+.++.+.++....+..++..+.+.||||+|++++..+...+++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||++++++|+.+..|+..+......    ++|+++|+||+|+.+.  +.+..+++++++..++ ++|+++||++|.||
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV  163 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNV  163 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-CeeEEEeCCCCcCH
Confidence            999999999999999999998877653    7899999999999865  7788999999999998 88999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccccCCccccc----CCCCCCCCCCccC
Q 028647          166 EEAFQCIAKNALKSGEEEEIYLPDTIDV----GNSSQPRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~gc~~  206 (206)
                      +++|+.|++.+...........+....+    ......++++|||
T Consensus       164 ~e~F~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C  208 (216)
T 4dkx_A          164 KQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC  208 (216)
T ss_dssp             HHHHHHHHHHC----------------------------------
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence            9999999999876555444433333222    2222344556667

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.5e-37  Score=222.34  Aligned_cols=199  Identities=34%  Similarity=0.654  Sum_probs=158.6

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            55456778999999999999999999999999888888888888888888899988999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....++...++...+ ++++++||+
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSAL  153 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCC
Confidence            99999999999999999999998888766432    7899999999999765  4566778888888776 899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCccccccC------C-cccccCCCCCCCCCCccC
Q 028647          161 EGINVEEAFQCIAKNALKSGEEEEIYL------P-DTIDVGNSSQPRSSGCEC  206 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~gc~~  206 (206)
                      +|.|++++|++|.+.+.+.........      + ..+.+...+..+++||||
T Consensus       154 ~g~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  206 (206)
T 2bcg_Y          154 DSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC  206 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCHHHHHTTSGGGCCCSCCCTTCC----------
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhcccccccccCCCccceeccccccccCCCCCC
Confidence            999999999999999987765443221      1 223333233356679977

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=5.9e-38  Score=225.64  Aligned_cols=203  Identities=72%  Similarity=1.193  Sum_probs=156.0

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG   80 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence            66677889999999999999999999999998888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|+|++++.+++.+..|+..+..........+.|+++|+||+|+.+   +....++...+.....+++++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~  157 (207)
T 1vg8_A           81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAK  157 (207)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHhcCCceEEEEeCC
Confidence            999999999999999999999998887776543334789999999999974   44567778888775556899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCcccccc--CCcccccCC--CCCCCCCCccC
Q 028647          161 EGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGN--SSQPRSSGCEC  206 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~gc~~  206 (206)
                      +|.|+++++++|.+.+.+.....+..  .+..+.+..  ....+++||||
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          158 EAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC  207 (207)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred             CCCCHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence            99999999999999998766544321  233344433  23467788988

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=212.54  Aligned_cols=194  Identities=27%  Similarity=0.458  Sum_probs=148.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..+.++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            34579999999999999999999999888777777776555 45667888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++++++.+..|+..+.......   ++|+++|+||+|+.+.  +....+++..++...+ ++++++||++|.|
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g  163 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRAN  163 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEeccCcccc--ccccHHHHHHHHHHhC-CeEEEEeCCCCCC
Confidence            99999999999999999998887765422   7899999999999764  4566788888888887 7999999999999


Q ss_pred             HHHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCCcc
Q 028647          165 VEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCE  205 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~  205 (206)
                      ++++|++|.+.+..+............+.....+..+++||
T Consensus       164 i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Cc  204 (206)
T 2bov_A          164 VDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCC  204 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHHHHHHHHHccccccccccCcccccchhhcccccee
Confidence            99999999999987543322221111112222344556786

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=210.57  Aligned_cols=175  Identities=33%  Similarity=0.627  Sum_probs=143.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            56799999999999999999999999988888888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+......    ++|+++|+||+|+.+.  +....++...++...+ ++++++||++|.|+
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  163 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ-LLFTETSALNSENV  163 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCCC-CCCH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            999999999999999999888766432    7899999999999764  4566778888888876 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccccC
Q 028647          166 EEAFQCIAKNALKSGEEEEIYL  187 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~~~~  187 (206)
                      +++|++|.+.+.+.....+..+
T Consensus       164 ~~l~~~l~~~i~~~~~~~~~~~  185 (223)
T 3cpj_B          164 DKAFEELINTIYQKVSKHQMDL  185 (223)
T ss_dssp             HHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHHHHHHHHhhhcccCc
Confidence            9999999999988776665543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=7.4e-34  Score=202.51  Aligned_cols=174  Identities=38%  Similarity=0.688  Sum_probs=154.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            44678999999999999999999999999888888999999988999999998999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+......    ++|+++|+||+|+.+.  +....++..+++..++ ++++++||++|.
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~  164 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNAT  164 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEEECTTTCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCCC
Confidence            99999999999999999999888776543    7899999999999866  5667778888888887 899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCcccc
Q 028647          164 NVEEAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~~~~  184 (206)
                      |++++|++|.+.+.++.....
T Consensus       165 gv~~l~~~l~~~i~~~~~~~~  185 (196)
T 3tkl_A          165 NVEQSFMTMAAEIKKRMGPGA  185 (196)
T ss_dssp             THHHHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHHHhcccc
Confidence            999999999999988765543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=201.80  Aligned_cols=174  Identities=41%  Similarity=0.714  Sum_probs=151.1

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            55567788999999999999999999999998888888898988988899999988999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|+|++++.+++.+..|+..+.....     +.|+++|+||+|+.+.  +....++...++...+ ++++++||+
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER--KVVETEDAYKFAGQMG-IQLFETSAK  153 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh--cccCHHHHHHHHHHcC-CeEEEEECC
Confidence            9999999999999999999999988877653     7899999999998765  4566778888888887 899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCcc
Q 028647          161 EGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      +|.|+++++++|.+.+.+....
T Consensus       154 ~~~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998775543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=6.9e-35  Score=205.75  Aligned_cols=174  Identities=40%  Similarity=0.699  Sum_probs=124.3

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |....++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++++
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   80 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence            55556778999999999999999999999888777778888888888888889888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|+|++++.+++.+..|+..+......    ++|+++|+||+|+.+.  +....+++.+++...+ ++++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~  153 (183)
T 2fu5_C           81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAK  153 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC-
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-CeEEEEeCC
Confidence            99999999999999999999999888765432    7899999999999765  4566788888888887 899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCc
Q 028647          161 EGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      +|.|++++|++|.+.+.++..
T Consensus       154 ~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          154 ANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999876544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=3.8e-34  Score=202.41  Aligned_cols=177  Identities=38%  Similarity=0.648  Sum_probs=154.7

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            55566788999999999999999999999999888888888888888888899988899999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....++..+++...+ ++++++||+
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  155 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSAL  155 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEecCC
Confidence            99999999999999999999998887665432    7899999999999754  4566777888888877 899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCcccc
Q 028647          161 EGINVEEAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~~~~  184 (206)
                      +|.|++++|++|.+.+.+.....+
T Consensus       156 ~~~gi~~l~~~l~~~~~~~~~~~~  179 (186)
T 2bme_A          156 TGENVEEAFVQCARKILNKIESGE  179 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhcC
Confidence            999999999999999987654443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.3e-33  Score=199.18  Aligned_cols=170  Identities=30%  Similarity=0.565  Sum_probs=150.3

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccC
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (206)
                      +....+.++|+|+|++|+|||||+++|....+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34566789999999999999999999999988888888877766 77778899889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc-
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK-  160 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~-  160 (206)
                      |++++|+|++++.+++.+..|+..+.......   ++|+++|+||+|+.+.  +....+++++++..++ ++++++||+ 
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~  164 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKD  164 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-CeEEEeccCC
Confidence            99999999999999999999988887654332   7899999999999875  6677888999999988 899999999 


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 028647          161 EGINVEEAFQCIAKNALK  178 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~  178 (206)
                      ++.|++++|++|.+.+.+
T Consensus       165 ~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          165 PPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SCBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998865

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2e-33  Score=197.12  Aligned_cols=173  Identities=52%  Similarity=0.996  Sum_probs=150.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      +....++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            45678999999999999999999999998888888888888888888899988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+..........+.|+++|+||+|+.+   +....+++.+++......+++++||++|.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDAT  159 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence            999999999999999999999888776544444889999999999973   45677888888885666899999999999


Q ss_pred             CHHHHHHHHHHHHHhc
Q 028647          164 NVEEAFQCIAKNALKS  179 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~  179 (206)
                      |++++|++|.+.+++.
T Consensus       160 gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          160 NVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=9.6e-34  Score=199.41  Aligned_cols=171  Identities=36%  Similarity=0.650  Sum_probs=148.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      .....++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            45678999999999999999999999998888888888888888888889888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....+++.+++...+ ++++++||++|.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~  160 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG-LFFMETSAKTAT  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCSSSCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence            99999999999999999999888776532    7899999999999765  4566788888888876 899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCc
Q 028647          164 NVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~  181 (206)
                      |+++++++|.+.+.+..+
T Consensus       161 gi~~l~~~l~~~~~~~~~  178 (181)
T 2efe_B          161 NVKEIFYEIARRLPRVQP  178 (181)
T ss_dssp             THHHHHHHHHHTCC----
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence            999999999998865543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.5e-34  Score=202.48  Aligned_cols=179  Identities=64%  Similarity=1.085  Sum_probs=138.3

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR   79 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (206)
                      |+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR   80 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence            65667788999999999999999999999998888888888877877777776 55678999999999999999999999


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      .+|++++|+|++++.+++.+..|+..+..........++|+++|+||+|+.... +....++..+++......+++++||
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa  159 (182)
T 1ky3_A           81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSEKSAQELAKSLGDIPLFLTSA  159 (182)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc-ccCCHHHHHHHHHhcCCCeEEEEec
Confidence            999999999999999999999999988877654444488999999999996432 3456778888887566689999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcC
Q 028647          160 KEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ++|.|++++|++|.+.+.++.
T Consensus       160 ~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          160 KNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999987653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.8e-34  Score=204.04  Aligned_cols=172  Identities=38%  Similarity=0.631  Sum_probs=151.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            34567999999999999999999999999888888898888888888899988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....++.+.++...+ ++++++||++|.
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~  174 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESD  174 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence            99999999999999999998888765432    7899999999999754  4566777888887776 899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCcc
Q 028647          164 NVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~~  182 (206)
                      |++++|++|.+.+.+....
T Consensus       175 gv~~l~~~l~~~i~~~~~~  193 (201)
T 2ew1_A          175 NVEKLFLDLACRLISEARQ  193 (201)
T ss_dssp             THHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999999875443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.3e-33  Score=198.63  Aligned_cols=175  Identities=32%  Similarity=0.533  Sum_probs=150.0

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |+......++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   80 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA   80 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence            5566677899999999999999999999999888777888776664 667788888899999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|+|++++.+++.+..|+..+.......   ++|+++|+||+|+.+.  +....++...+....+ ++++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~  154 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAK  154 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS---CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCC
Confidence            999999999999999999999988886654322   7899999999999764  4566777888887776 899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCcc
Q 028647          161 EGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      +|.|+++++++|.+.+.+....
T Consensus       155 ~~~gv~~l~~~l~~~~~~~~~~  176 (181)
T 2fn4_A          155 LRLNVDEAFEQLVRAVRKYQEQ  176 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999776543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.1e-33  Score=201.02  Aligned_cols=171  Identities=39%  Similarity=0.677  Sum_probs=147.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ...+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            44678999999999999999999999998888788888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++++++.+..|+..+......    +.|+++|+||+|+.+.  +....++.++++...+ ++++++||++|.
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  169 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTAC  169 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCCc--cccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence            99999999999999999998888765432    7899999999999754  4566778888888887 899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCc
Q 028647          164 NVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~  181 (206)
                      |++++|++|.+.+.++..
T Consensus       170 gi~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          170 NVEEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999876543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.8e-33  Score=197.51  Aligned_cols=168  Identities=37%  Similarity=0.674  Sum_probs=149.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ...+.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            45678999999999999999999999998887788888888888888889888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....+++++++...+ ++++++||++|.
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  163 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGE  163 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence            99999999999999999998888766432    7899999999999754  4566778888888877 899999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 028647          164 NVEEAFQCIAKNALK  178 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~  178 (206)
                      |++++|++|.+.+.+
T Consensus       164 gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          164 NVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             THHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=202.43  Aligned_cols=171  Identities=37%  Similarity=0.659  Sum_probs=143.7

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      .+....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            45567899999999999999999999998888788888888888888889998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....++.++++..+.+.+++++||++|
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g  174 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD--REITRQQGEKFAQQITGMRFCEASAKDN  174 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTSTTCEEEECBTTTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            999999999999999998888777665432    7899999999999764  4566778888888765689999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 028647          163 INVEEAFQCIAKNALKS  179 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~  179 (206)
                      .|++++|++|.+.+.++
T Consensus       175 ~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          175 FNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             BSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.8e-33  Score=199.25  Aligned_cols=172  Identities=35%  Similarity=0.617  Sum_probs=150.7

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccC
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (206)
                      .....+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (195)
T 1x3s_A            9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA   88 (195)
T ss_dssp             CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34445679999999999999999999999988888888888888888888999899999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (206)
                      |++++|+|++++.+++.+..|+..+.....   ..++|+++|+||+|+.+   +....++..+++...+ ++++++||++
T Consensus        89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~  161 (195)
T 1x3s_A           89 QGVILVYDVTRRDTFVKLDNWLNELETYCT---RNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKT  161 (195)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHTTCCS---CSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC-CEEEEecCCC
Confidence            999999999999999999999888765432   22789999999999954   4456777888888876 8999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcC
Q 028647          162 GINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~~  180 (206)
                      +.|+++++++|.+.+.+..
T Consensus       162 ~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          162 CDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             CTTHHHHHHHHHHHHHTSG
T ss_pred             CCCHHHHHHHHHHHHHhhh
Confidence            9999999999999997644

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2e-33  Score=197.90  Aligned_cols=170  Identities=31%  Similarity=0.465  Sum_probs=148.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..+.++|+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34679999999999999999999998888888888887776 67778899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++++++.+..|+..+.......   ++|+++|+||+|+.+.  +....+++++++..++ ++++++||++|.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  155 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQT  155 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCTTSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccchhc--ceecHHHHHHHHHHhC-CcEEEEecCCCCC
Confidence            99999999999999999998887765432   7899999999999765  6677889999999887 8999999999999


Q ss_pred             HHHHHHHHHHHHHhcCc
Q 028647          165 VEEAFQCIAKNALKSGE  181 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~  181 (206)
                      ++++|++|++.+.....
T Consensus       156 v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          156 AVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             HHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999977653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.4e-34  Score=201.85  Aligned_cols=171  Identities=40%  Similarity=0.645  Sum_probs=148.2

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccC
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (206)
                      +...++.++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (192)
T 2fg5_A           17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS   96 (192)
T ss_dssp             ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred             ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence            34457789999999999999999999999988878888888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (206)
                      |++++|+|++++.+++.+..|+..+......    ++|+++|+||+|+.+.  +....+++++++...+ ++++++||++
T Consensus        97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~  169 (192)
T 2fg5_A           97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDLSDI--REVPLKDAKEYAESIG-AIVVETSAKN  169 (192)
T ss_dssp             SEEEEEEETTCTHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTTT-CEEEECBTTT
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence            9999999999999999999999888766432    7899999999999753  4566788888888887 8999999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 028647          162 GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~  179 (206)
                      |.|+++++++|.+.+.+.
T Consensus       170 ~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          170 AINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TBSHHHHHHHHHHTCC--
T ss_pred             CcCHHHHHHHHHHHHHhh
Confidence            999999999999887544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=202.52  Aligned_cols=171  Identities=35%  Similarity=0.563  Sum_probs=142.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            35679999999999999999999999988877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+.....    .++|+++|+||+|+.+.  +....+++++++...+..+++++||++|.|
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  179 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYDILCAIETSAKDSSN  179 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCccccc--cccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence            999999999999999999988876652    27899999999999764  456778888898888733999999999999


Q ss_pred             HHHHHHHHHHHHHhcCc
Q 028647          165 VEEAFQCIAKNALKSGE  181 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~  181 (206)
                      ++++|++|.+.+.+...
T Consensus       180 i~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          180 VEEAFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999976543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=3.1e-33  Score=198.40  Aligned_cols=168  Identities=35%  Similarity=0.660  Sum_probs=149.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            45679999999999999999999999988878888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....+++++++..++ ++++++||++|.|
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g  171 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG-FEFFEASAKENIN  171 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence            9999999999999999998888765422    7899999999999754  4556778888888887 8999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028647          165 VEEAFQCIAKNALKS  179 (206)
Q Consensus       165 i~~l~~~l~~~~~~~  179 (206)
                      +++++++|.+.+.++
T Consensus       172 i~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          172 VKQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=3.7e-33  Score=198.76  Aligned_cols=172  Identities=27%  Similarity=0.517  Sum_probs=149.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..+.++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            456799999999999999999999999888777888776664 4667888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      ++|+|++++.+++.+ ..|+..+.....     ++|+++|+||+|+.+...+....+++.+++..++...++++||++|.
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  173 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKI  173 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence            999999999999997 677777765543     78999999999998765577888999999999884449999999999


Q ss_pred             CHHHHHHHHHHHHHhcCcc
Q 028647          164 NVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~~  182 (206)
                      |++++|++|.+.+.++++.
T Consensus       174 gi~~l~~~l~~~i~~~~~~  192 (194)
T 3reg_A          174 GLNEVFEKSVDCIFSNKPV  192 (194)
T ss_dssp             SHHHHHHHHHHHHHCSCC-
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            9999999999999876553

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.4e-33  Score=196.66  Aligned_cols=167  Identities=38%  Similarity=0.669  Sum_probs=141.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45779999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....++..+++...+ ++++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  155 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKG  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCCCCCC
Confidence            9999999999999999998887665432    7899999999999764  4566778888888887 8999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028647          165 VEEAFQCIAKNALK  178 (206)
Q Consensus       165 i~~l~~~l~~~~~~  178 (206)
                      +++++++|.+.+.+
T Consensus       156 i~~l~~~l~~~~~~  169 (170)
T 1z08_A          156 IEELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3.3e-33  Score=194.63  Aligned_cols=166  Identities=39%  Similarity=0.703  Sum_probs=142.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46999999999999999999999998888888888888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++.+++.+..|+..+......    +.|+++|+||+|+.+   +....++..+++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  153 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVN  153 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCCc---CccCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence            99999999999999998888776532    789999999999943   4456778888888887 899999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 028647          167 EAFQCIAKNALKSG  180 (206)
Q Consensus       167 ~l~~~l~~~~~~~~  180 (206)
                      +++++|.+.+.++.
T Consensus       154 ~l~~~l~~~~~~~~  167 (170)
T 1g16_A          154 EIFFTLAKLIQEKI  167 (170)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.1e-33  Score=204.11  Aligned_cols=173  Identities=31%  Similarity=0.557  Sum_probs=142.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999888777777776555 455677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc------cccHHHHHHHHHhcCCCcEEEee
Q 028647           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR------VVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                      +|+|++++++++.+. .|+..+.....     +.|+++|+||+|+.+....      ....+++.+++..++..+++++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS  160 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence            999999999999986 78887766543     7899999999999764211      23677888888888755999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHhcCcccc
Q 028647          159 AKEGINVEEAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~~~~~~~~  184 (206)
                      |++|.|++++|++|++.+.......+
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~~~~~  186 (212)
T 2j0v_A          161 SKTQQNVKAVFDTAIKVVLQPPRRKE  186 (212)
T ss_dssp             TTTCTTHHHHHHHHHHHHHCC-----
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhhhcc
Confidence            99999999999999999987665444

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=3.5e-33  Score=194.42  Aligned_cols=166  Identities=40%  Similarity=0.696  Sum_probs=147.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      +.+.++|+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45679999999999999999999999988888888888888888888898889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+......    ++|+++|+||+|+.+.  +....++..+++...+ ++++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g  155 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMN  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence            9999999999999999998888766432    7899999999999754  4556778888888776 8999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028647          165 VEEAFQCIAKNAL  177 (206)
Q Consensus       165 i~~l~~~l~~~~~  177 (206)
                      +++++++|.+.+.
T Consensus       156 i~~l~~~i~~~~~  168 (170)
T 1r2q_A          156 VNEIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988663

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.7e-33  Score=194.34  Aligned_cols=170  Identities=39%  Similarity=0.671  Sum_probs=140.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      ..+..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            4567899999999999999999999998875 466788888887777788998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....++..+++...+ ++++++||++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  158 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTG  158 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence            999999999999999999998888766532    7899999999999865  5566778888888877 89999999999


Q ss_pred             CCHHHHHHHHHHHHHhcC
Q 028647          163 INVEEAFQCIAKNALKSG  180 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~  180 (206)
                      .|+++++++|.+.+.++.
T Consensus       159 ~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          159 LNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TTHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999886543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=7.3e-33  Score=195.75  Aligned_cols=168  Identities=26%  Similarity=0.457  Sum_probs=143.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ...+.++|+|+|.+|||||||+++|+.+.+...+.++ +..+ ...+.+++..+.+.+|||+|++.+.     +++.+|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            3456799999999999999999999999888777666 3333 4778889999999999999988766     7788999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|||++++.+++.+..|+..+.....   ..++|+++|+||+|+.....+....+++.+++..++..+++++||++|.
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence            9999999999999999999988876532   1278999999999997655577888999999999877899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCc
Q 028647          164 NVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~  181 (206)
                      |++++|++|.+.+.+.++
T Consensus       166 gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          166 NVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             THHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999877643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=3.6e-33  Score=194.05  Aligned_cols=165  Identities=35%  Similarity=0.725  Sum_probs=147.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+.....     +.|+++|+||+|+.+.  +....++.++++...+ .+++++||+++.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  154 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNV  154 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEecCCCCCH
Confidence            99999999999999999888877652     7899999999999764  4456778888888887 79999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028647          166 EEAFQCIAKNALK  178 (206)
Q Consensus       166 ~~l~~~l~~~~~~  178 (206)
                      ++++++|.+.+.+
T Consensus       155 ~~l~~~l~~~~~~  167 (168)
T 1z2a_A          155 SEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3e-34  Score=203.93  Aligned_cols=171  Identities=35%  Similarity=0.635  Sum_probs=152.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            45678999999999999999999999988888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....++.+.++...+ ++++++||++|.
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  171 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG-FDFFEASAKENI  171 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence            99999999999999999999888765432    7899999999999765  5677788888888887 799999999999


Q ss_pred             CHHHHHHHHHHHHHhcCc
Q 028647          164 NVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~  181 (206)
                      |++++|++|.+.+.++.+
T Consensus       172 gi~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          172 SVRQAFERLVDAICDKMS  189 (191)
T ss_dssp             SHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHhcc
Confidence            999999999999987654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.7e-33  Score=193.77  Aligned_cols=166  Identities=39%  Similarity=0.665  Sum_probs=146.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            45899999999999999999999998888888888888888888889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-ccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      |+|++++.+++.+..|+..+......    +.|+++|+||+|+.+... +....++..+++...+ ++++++||++|.|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  156 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999888776532    789999999999975422 4456777788888777 89999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028647          166 EEAFQCIAKNAL  177 (206)
Q Consensus       166 ~~l~~~l~~~~~  177 (206)
                      +++|++|.+.+.
T Consensus       157 ~~l~~~l~~~i~  168 (170)
T 1ek0_A          157 NDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1e-32  Score=192.10  Aligned_cols=166  Identities=39%  Similarity=0.687  Sum_probs=147.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++......+.+....+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+......    ..|+++|+||+|+.+.  +....++...++...+ .+++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~  155 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAIN  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECCccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence            9999999999999998998888765332    7899999999999764  4566778888888877 8999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028647          165 VEEAFQCIAKNAL  177 (206)
Q Consensus       165 i~~l~~~l~~~~~  177 (206)
                      +++++++|.+.+.
T Consensus       156 i~~l~~~i~~~i~  168 (170)
T 1z0j_A          156 INELFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998763

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=200.41  Aligned_cols=172  Identities=38%  Similarity=0.640  Sum_probs=141.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            56799999999999999999999998888888888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+......    +.|+++|+||+|+...  +....++..+++...+ ++++++||++|.|+
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi  175 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSALTGENV  175 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            999999999999999998888765432    7899999999999754  4456677888888776 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCcccc
Q 028647          166 EEAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~~  184 (206)
                      +++|++|.+.+.++....+
T Consensus       176 ~~l~~~l~~~i~~~~~~~~  194 (200)
T 2o52_A          176 EEAFLKCARTILNKIDSGE  194 (200)
T ss_dssp             HHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            9999999999987655443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=197.61  Aligned_cols=171  Identities=35%  Similarity=0.652  Sum_probs=151.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            35679999999999999999999999988878888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....++..+++..++ ++++++||++|.|
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  157 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNIN  157 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCS----SCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCcc--cccCHHHHHHHHHHCC-CeEEEEECCCCCC
Confidence            9999999999999999998888765422    7899999999999765  5566788888888887 7999999999999


Q ss_pred             HHHHHHHHHHHHHhcCcc
Q 028647          165 VEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~~  182 (206)
                      ++++|++|.+.+.++.+.
T Consensus       158 i~~l~~~l~~~i~~~~~~  175 (203)
T 1zbd_A          158 VKQTFERLVDVICEKMSE  175 (203)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999988765443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7e-33  Score=197.12  Aligned_cols=168  Identities=34%  Similarity=0.646  Sum_probs=148.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+.+.  +....++.+.++...+ ++++++||++|.|
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  174 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLVGNKSDLSQA--REVPTEEARMFAENNG-LLFLETSALDSTN  174 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence            999999999999998899888765432    27899999999999764  4456777888887776 8999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028647          165 VEEAFQCIAKNALKS  179 (206)
Q Consensus       165 i~~l~~~l~~~~~~~  179 (206)
                      +++++++|.+.+.++
T Consensus       175 i~~l~~~l~~~i~~~  189 (193)
T 2oil_A          175 VELAFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=5.9e-33  Score=197.95  Aligned_cols=172  Identities=21%  Similarity=0.299  Sum_probs=141.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-chhhhhccCc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGAD   82 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d   82 (206)
                      .....++|+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ....+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            446679999999999999999999976544434455666666677788899999999999999987665 6677888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|||++++.+++.+..|+..+......   .+.|+++|+||+|+.+.  +....+++++++..++ ++++++||++|
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~  172 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALH  172 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEEEBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC-CEEEEEcCCCC
Confidence            999999999999999999999887765431   27899999999999765  5567788888888887 79999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCc
Q 028647          163 INVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~~  181 (206)
                      .|++++|++|++.+..+..
T Consensus       173 ~~v~~lf~~l~~~i~~~~~  191 (195)
T 3cbq_A          173 HNTRELFEGAVRQIRLRRG  191 (195)
T ss_dssp             BSHHHHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHhcC
Confidence            9999999999999876544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=9.3e-33  Score=193.99  Aligned_cols=169  Identities=22%  Similarity=0.415  Sum_probs=140.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|.+|+|||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+||++|++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            457999999999999999999999988876 666666444 66777888889999999999875     45788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++++++.+..|+..+....... ..++|+++|+||+|+.+...+....+++.+++...++.+++++||++|.|+
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            9999999999999999776665543321 237899999999999654446678888888888876689999999999999


Q ss_pred             HHHHHHHHHHHHhcCcc
Q 028647          166 EEAFQCIAKNALKSGEE  182 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~  182 (206)
                      +++|++|.+.+.+..+.
T Consensus       157 ~~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          157 DRVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999998876544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=9.8e-33  Score=191.69  Aligned_cols=164  Identities=30%  Similarity=0.561  Sum_probs=142.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999888777777776555 45667788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|++++.+++.+..|+..+......   .+.|+++|+||+|+.+.  +....++...++..+++.+++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECcccccc--ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHH
Confidence            9999999999999998888776432   27899999999999764  556678888888888668999999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          168 AFQCIAKNAL  177 (206)
Q Consensus       168 l~~~l~~~~~  177 (206)
                      ++++|.+.+.
T Consensus       157 l~~~l~~~i~  166 (167)
T 1c1y_A          157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998873

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.1e-32  Score=192.00  Aligned_cols=166  Identities=22%  Similarity=0.306  Sum_probs=131.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-chhhhhccCcEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~   86 (206)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998777666666667777788888999999999999999988876 66777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++++++.+..|+..+.......   ++|+++|+||+|+.+.  +....++..+++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  155 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHH---DLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHHNTR  155 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCC---CCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC-CcEEEecCccCCCHH
Confidence            999999999999999999887765422   7899999999999754  5677888888988887 899999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028647          167 EAFQCIAKNALKS  179 (206)
Q Consensus       167 ~l~~~l~~~~~~~  179 (206)
                      ++|++|.+.+..+
T Consensus       156 ~l~~~l~~~i~~~  168 (169)
T 3q85_A          156 ELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988664

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.2e-32  Score=195.29  Aligned_cols=166  Identities=36%  Similarity=0.646  Sum_probs=144.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-cchhhhhccCcEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCC   84 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~   84 (206)
                      .+.++|+|+|.+|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            457999999999999999999999998888888888888888888899988999999999999888 7888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC--
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG--  162 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--  162 (206)
                      ++|+|++++.+++.+..|+..+.......   +.|+++|+||+|+.+.  +....++.++++...+ ++++++||+++  
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~  171 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPND  171 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--ceeCHHHHHHHHHHcC-CEEEEEeCCcCCc
Confidence            99999999999999999998888765322   7899999999999754  4566778888888877 89999999999  


Q ss_pred             -CCHHHHHHHHHHHHH
Q 028647          163 -INVEEAFQCIAKNAL  177 (206)
Q Consensus       163 -~~i~~l~~~l~~~~~  177 (206)
                       .|++++|++|.+.+.
T Consensus       172 ~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GSCHHHHHHHHC----
T ss_pred             ccCHHHHHHHHHHHHh
Confidence             999999999988774

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.3e-32  Score=195.57  Aligned_cols=172  Identities=41%  Similarity=0.666  Sum_probs=148.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEEeCCe---------EEEEEEEeCCChhhhccc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSL   73 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~   73 (206)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.+||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4567899999999999999999999998888778888887776 566666665         789999999999999999


Q ss_pred             hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      +..+++.+|++++|+|++++.+++.+..|+..+......   .++|+++|+||+|+.+.  +....+++.+++...+ ++
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~  160 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS---ENPDIVLCGNKSDLEDQ--RAVKEEEARELAEKYG-IP  160 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS---SSCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CC
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CC
Confidence            999999999999999999999999999998888766532   27899999999999764  4566778888888887 79


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          154 YFETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      ++++||+++.|+++++++|.+.+.++..
T Consensus       161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          161 YFETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999876543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=4e-32  Score=192.32  Aligned_cols=169  Identities=33%  Similarity=0.576  Sum_probs=143.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999888777766664 444566778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+.......   +.|+++|+||+|+.+   .....++...++...+ ++++++||++|.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi  153 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSE---DVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG-IPFIETSAKTRQGV  153 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECccCcc---cccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            9999999999999999988887764432   789999999999975   4566778888888887 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCcc
Q 028647          166 EEAFQCIAKNALKSGEE  182 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~  182 (206)
                      ++++++|.+.+......
T Consensus       154 ~~l~~~l~~~~~~~~~~  170 (189)
T 4dsu_A          154 DDAFYTLVREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999999765543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=9.8e-33  Score=193.76  Aligned_cols=166  Identities=37%  Similarity=0.642  Sum_probs=146.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            35699999999999999999999999888888888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+......    ++|+++|+||+|+.+.  +....++...++...+ ++++++||++|.|+
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  164 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN-VMFIETSAKAGYNV  164 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCccccc--CcCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            999999999999999998888765432    7899999999999764  4556777788888777 89999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028647          166 EEAFQCIAKNALK  178 (206)
Q Consensus       166 ~~l~~~l~~~~~~  178 (206)
                      ++++++|.+.+.+
T Consensus       165 ~~l~~~l~~~~~~  177 (179)
T 2y8e_A          165 KQLFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-32  Score=197.05  Aligned_cols=168  Identities=39%  Similarity=0.697  Sum_probs=147.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999999888888888888888888889998889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+......    +.|+++|+||+|+..   +....++..+++..++ ++++++||++|.|+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNV  169 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTT----CSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCcc---cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            999999999999998998888766432    789999999999943   4556777888888877 79999999999999


Q ss_pred             HHHHHHHHHHHHhcCc
Q 028647          166 EEAFQCIAKNALKSGE  181 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~  181 (206)
                      ++++++|.+.+.+...
T Consensus       170 ~~l~~~l~~~~~~~~~  185 (213)
T 3cph_A          170 NEIFFTLAKLIQEKID  185 (213)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998876543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=198.00  Aligned_cols=172  Identities=22%  Similarity=0.445  Sum_probs=143.5

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (206)
                      |+...+..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   99 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   99 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence            445567789999999999999999999999988877777776655 4566778888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhc
Q 028647           81 ADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASK  149 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~  149 (206)
                      +|++++|||++++.+++.+ ..|+..+.....     +.|+++|+||+|+.+.          ..+.+..+++++++..+
T Consensus       100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (205)
T 1gwn_A          100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  174 (205)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence            9999999999999999998 678887766542     7899999999999742          12456778888898888


Q ss_pred             CCCcEEEeecc-CCCCHHHHHHHHHHHHHh
Q 028647          150 GNIPYFETSAK-EGINVEEAFQCIAKNALK  178 (206)
Q Consensus       150 ~~~~~~~~S~~-~~~~i~~l~~~l~~~~~~  178 (206)
                      +..+++++||+ ++.|++++|+.|.+.+++
T Consensus       175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          175 GAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            76789999999 689999999999998875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=9.8e-33  Score=199.56  Aligned_cols=173  Identities=21%  Similarity=0.391  Sum_probs=144.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            35579999999999999999999999998888888887766 45667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCc
Q 028647           85 VLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|||++++++++. +..|+..+.....     +.|+++|+||+|+.+.          ..+....+++..++..++..+
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  177 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI  177 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence            99999999999998 6888888877643     7899999999999753          125577888999999998339


Q ss_pred             EEEeeccCCCC-HHHHHHHHHHHHHhcCccc
Q 028647          154 YFETSAKEGIN-VEEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       154 ~~~~S~~~~~~-i~~l~~~l~~~~~~~~~~~  183 (206)
                      ++++||++|.| ++++|++|++.+.......
T Consensus       178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          178 YLEGSAFTSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred             EEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence            99999999998 9999999999998765543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=8.7e-33  Score=194.01  Aligned_cols=171  Identities=34%  Similarity=0.542  Sum_probs=145.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-eEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999999887766677877778788888876 57899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      +++|+|++++++++.+..|+..+........  +.| +++|+||+|+.+.  +....++...++...+ ++++++||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE--TQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG-FSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT--CCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccC--CCCeEEEEEEccccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence            9999999999999999888887766432100  334 8999999999764  4566778888888887 89999999999


Q ss_pred             CCHHHHHHHHHHHHHhcC
Q 028647          163 INVEEAFQCIAKNALKSG  180 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~  180 (206)
                      .|++++|++|.+.+.+..
T Consensus       158 ~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             TTHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhhh
Confidence            999999999999987654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-32  Score=197.04  Aligned_cols=170  Identities=27%  Similarity=0.427  Sum_probs=141.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            45679999999999999999999999888777777766544 34556788888999999999999998899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+......  ..+.|+++|+||+|+.+   +....++...++..++ ++++++||++|.|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  157 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQ---REVDTREAQAVAQEWK-CAFMETSAKMNYN  157 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSS---CSSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCc---cccCHHHHHHHHHHhC-CeEEEEecCCCCC
Confidence            9999999999999888887766554321  12679999999999975   3455677778888877 7899999999999


Q ss_pred             HHHHHHHHHHHHHhcCc
Q 028647          165 VEEAFQCIAKNALKSGE  181 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~  181 (206)
                      +++++++|.+.+.++..
T Consensus       158 i~~l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          158 VKELFQELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHHHHHHCSSSCE
T ss_pred             HHHHHHHHHHHHhhhhc
Confidence            99999999998866543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=3.5e-32  Score=188.92  Aligned_cols=165  Identities=31%  Similarity=0.549  Sum_probs=140.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            358999999999999999999999888777777766554 4556788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++++++.+..|+..+.......   +.|+++|+||+|+.+.  +....++...++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  155 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD  155 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCHH
Confidence            999999999999999988887766432   7899999999999764  4566778888888887 899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      +++++|.+.+.+
T Consensus       156 ~l~~~l~~~i~~  167 (168)
T 1u8z_A          156 KVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=194.06  Aligned_cols=169  Identities=25%  Similarity=0.427  Sum_probs=139.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+..+ .....+++..+.+.+||++|++.+... ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            345679999999999999999999999988877888877665 456678888899999999999888764 678899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec-cCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA-KEG  162 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~  162 (206)
                      +++|||++++++++.+..|+..+....... ..++|+++|+||+|+.+.  +....+++.+++..++ ++++++|| ++|
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~g  170 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKET-QRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG-CLFFEVSACLDF  170 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECCSSSCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC-CcEEEEeecCcc
Confidence            999999999999999999998887664210 017899999999999754  5567788889998887 89999999 899


Q ss_pred             CCHHHHHHHHHHHHHh
Q 028647          163 INVEEAFQCIAKNALK  178 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~  178 (206)
                      .|++++|+.|++.+.+
T Consensus       171 ~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          171 EHVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHhh
Confidence            9999999999998754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.9e-33  Score=198.15  Aligned_cols=170  Identities=31%  Similarity=0.470  Sum_probs=141.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            4679999999999999999999999998877778777666 666667777788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++++++.+..|+..+......   .++|+++|+||+|+.+.  +....++...++...+ ++++++||++|.|+
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  174 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGK---TRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG-ATFMESSARENQLT  174 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccCccc--cccCHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence            999999999999999998888765332   27899999999999765  5667788888888887 79999999999999


Q ss_pred             HHHHHHHHHHHHhcCcc
Q 028647          166 EEAFQCIAKNALKSGEE  182 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~  182 (206)
                      +++|++|.+.+.+....
T Consensus       175 ~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          175 QGIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999999776544

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=5.8e-32  Score=193.76  Aligned_cols=166  Identities=31%  Similarity=0.611  Sum_probs=144.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE----------------------------
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL----------------------------   56 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   56 (206)
                      .++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3567999999999999999999999998888888888888888777777655                            


Q ss_pred             ---------EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           57 ---------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        57 ---------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                               ..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+....      +.|+++|+||+
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~  157 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKI  157 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECT
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECC
Confidence                     789999999999999999999999999999999999999999999988887653      47999999999


Q ss_pred             CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      | ...  +....+++.+++...+ ++++++||++|.|+++++++|.+.+.++.
T Consensus       158 D-~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          158 D-KNK--FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             T-CC---CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             C-ccc--ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            9 332  5567788888888887 89999999999999999999999887643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=196.87  Aligned_cols=169  Identities=34%  Similarity=0.583  Sum_probs=136.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            35679999999999999999999999988777788888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----CcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----NSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      ++|+|++++.+++.+..|+..+......    ++|+++|+||+|+.+.    ..+....++...++...+ ++++++||+
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA~  179 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAK  179 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEECCTT
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEeeCC
Confidence            9999999999999999998877665432    7899999999999631    124566778888888887 899999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 028647          161 EGINVEEAFQCIAKNALK  178 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~  178 (206)
                      +|.|++++|++|.+.+.+
T Consensus       180 ~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          180 DGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TCTTHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998854

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-32  Score=191.71  Aligned_cols=168  Identities=27%  Similarity=0.476  Sum_probs=144.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            35789999999999999999999999988777777776655 45667788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCc
Q 028647           85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|+|++++++++.+. .|+..+.....     ++|+++|+||+|+.+..          .+....++..+++..++..+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  168 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  168 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence            9999999999999987 78887776543     78999999999997642          13566788888988887558


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          154 YFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ++++||++|.|++++|++|.+.++.
T Consensus       169 ~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          169 YVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999998863

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=4e-32  Score=190.07  Aligned_cols=167  Identities=28%  Similarity=0.397  Sum_probs=131.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--hccchhhhhccCcEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADCC   84 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~~   84 (206)
                      +.++|+|+|++|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+||+||++.  +......+++.+|++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            5699999999999999999999988765443 3455666677788889888999999999877  455667788899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+.....   ..++|+++|+||+|+.+.  +....++.+.++..++ ++++++||++|.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~g  155 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVEEGRACAVVFD-CKFIETSATLQHN  155 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHHT-SEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHHHHHHHHHHcC-CeEEEEecCCCCC
Confidence            999999999999999988887765432   227899999999999865  4566777788888777 8999999999999


Q ss_pred             HHHHHHHHHHHHHhcC
Q 028647          165 VEEAFQCIAKNALKSG  180 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~  180 (206)
                      ++++|++|.+.+..+.
T Consensus       156 i~~l~~~l~~~~~~~~  171 (175)
T 2nzj_A          156 VAELFEGVVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999886543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=3.7e-32  Score=192.06  Aligned_cols=169  Identities=30%  Similarity=0.529  Sum_probs=145.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..+.++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34579999999999999999999999888777777766555 45567888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+.......   ++|+++|+||+|+.+.  +....++..+++..++ ++++++||+++.|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  167 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRAN  167 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCC
Confidence            99999999999999999998888766532   6899999999999764  4566788888888887 8999999999999


Q ss_pred             HHHHHHHHHHHHHhcC
Q 028647          165 VEEAFQCIAKNALKSG  180 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~  180 (206)
                      ++++|++|.+.+.+++
T Consensus       168 i~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          168 VDKVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987644

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=3.7e-32  Score=188.62  Aligned_cols=164  Identities=32%  Similarity=0.547  Sum_probs=142.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999888777777765444 66777888888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|++++.+++.+..|+..+.......   +.|+++|+||+|+.+.  +....++...++...+ .+++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYE---KVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTS---CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECCccccc--ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHHH
Confidence            99999999999999988887765432   7899999999998754  4566777888888876 8999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028647          168 AFQCIAKNALK  178 (206)
Q Consensus       168 l~~~l~~~~~~  178 (206)
                      ++++|.+.+.+
T Consensus       156 l~~~l~~~~~~  166 (167)
T 1kao_A          156 LFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=9.9e-33  Score=199.83  Aligned_cols=172  Identities=42%  Similarity=0.699  Sum_probs=145.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe----------EEEEEEEeCCChhhhccch
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~   74 (206)
                      .++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++.          .+.+.+||+||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            466799999999999999999999998887777777777777777777665          6889999999999999999


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ..+++.+|++++|+|++++.+++.+..|+..+.....   ..++|+++|+||+|+.+.  +....+++.+++..++ +++
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~  175 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY---CENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPY  175 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT---TTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCE
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCCEEEEEECCccccc--cccCHHHHHHHHHHCC-CcE
Confidence            9999999999999999999999988888776543321   137899999999999764  4566788888888887 899


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      +++||+++.|++++|++|.+.+.++...
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998775443

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=3.8e-32  Score=191.99  Aligned_cols=168  Identities=21%  Similarity=0.447  Sum_probs=143.1

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999988777777776655 45667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCc
Q 028647           85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|+|++++++++.+ ..|+..+.....     +.|+++|+||+|+.+.          ..+.+..+++.+++..++..+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence            999999999999988 678777765542     7899999999999743          124567788889998887679


Q ss_pred             EEEeecc-CCCCHHHHHHHHHHHHHh
Q 028647          154 YFETSAK-EGINVEEAFQCIAKNALK  178 (206)
Q Consensus       154 ~~~~S~~-~~~~i~~l~~~l~~~~~~  178 (206)
                      ++++||+ ++.|++++|+.+.+.+++
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            9999998 689999999999998875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=5.2e-32  Score=187.96  Aligned_cols=164  Identities=24%  Similarity=0.345  Sum_probs=120.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+++|++|+|||||+++|.+..... ..++.+.++ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            5899999999999999999998766442 233444444 45667889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|++++++++.+..|+..+......   .++|+++|+||+|+.+.  +....++...+....+ ++++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  153 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQA  153 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEeccccccc--cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Confidence            9999999999999998888764322   27899999999999865  5677888888888887 8999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028647          168 AFQCIAKNALKS  179 (206)
Q Consensus       168 l~~~l~~~~~~~  179 (206)
                      +|++|.+.+..+
T Consensus       154 l~~~l~~~~~~~  165 (166)
T 3q72_A          154 LFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=6e-32  Score=193.48  Aligned_cols=171  Identities=27%  Similarity=0.455  Sum_probs=137.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      .....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            346689999999999999999999999887777777766544 5567788888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCC
Q 028647           84 CVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~  152 (206)
                      +++|+|++++++++.+. .|+..+.....     ++|+++|+||+|+.+..          .+....++...++..++..
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA  169 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence            99999999999999986 68887776543     78999999999997531          2456678888888888755


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +++++||++|.|++++|++|.+.+.+.+
T Consensus       170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          170 SYIECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.1e-31  Score=189.51  Aligned_cols=168  Identities=26%  Similarity=0.489  Sum_probs=142.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            569999999999999999999999888777777766544 5566788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEE
Q 028647           87 VYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        87 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      |+|++++.+++.+. .|+..+.....     +.|+++|+||+|+.+..          .+....++...++...+..+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  157 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  157 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            99999999999887 67777766543     78999999999997642          1345677788888888745999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ++||++|.|+++++++|.+.+++..
T Consensus       158 ~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          158 ECSALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             EecCCCccCHHHHHHHHHHHHhccc
Confidence            9999999999999999999986543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-31  Score=191.54  Aligned_cols=167  Identities=27%  Similarity=0.478  Sum_probs=143.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            5579999999999999999999999988877777776655 55567888889999999999887 677888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC-C
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-N  164 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~  164 (206)
                      +|+|++++++++.+..|+..+......   .++|+++|+||+|+.+.  +....++..+++..++ ++++++||++|. |
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~g  177 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGN  177 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCC---CCCcEEEEEECcccccc--cccCHHHHHHHHHHhC-CeEEEECCCcCCcC
Confidence            999999999999999998888765432   27899999999999764  4566788888888886 899999999999 9


Q ss_pred             HHHHHHHHHHHHHhcC
Q 028647          165 VEEAFQCIAKNALKSG  180 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~  180 (206)
                      ++++|++|.+.+.++.
T Consensus       178 i~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          178 ITEIFYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999987643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.4e-31  Score=190.43  Aligned_cols=168  Identities=26%  Similarity=0.515  Sum_probs=142.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            356799999999999999999999999888777777776664 4467788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCc
Q 028647           85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|+|++++++++.+ ..|+..+.....     +.|+++|+||+|+.+...          +....++...++...+..+
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  175 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG  175 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence            999999999999988 577777665442     789999999999976421          2356678888888887558


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          154 YFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ++++||++|.|+++++++|.+.+++
T Consensus       176 ~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          176 YLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999998753

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-31  Score=191.42  Aligned_cols=169  Identities=23%  Similarity=0.348  Sum_probs=134.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-hccchhhhhccC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGA   81 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~   81 (206)
                      ....++|+|+|.+|+|||||+++|.+...  ... .++++.+.....+.+++..+.+.+|||+|++. +......+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            35679999999999999999999996432  332 33456666677788899889999999999776 344556677889


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (206)
                      |++++|||++++.+|+.+..|...+.....   ..++|+++|+||+|+.+.  +.+..++.+.++..++ ++++++||++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~-~~~~e~SAk~  186 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAV  186 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence            999999999999999999888877654321   127899999999999754  4566677777777776 8999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcC
Q 028647          162 GINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~~  180 (206)
                      |.|++++|++|++.+..+.
T Consensus       187 g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          187 QHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             TBSHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999886544

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.2e-30  Score=180.64  Aligned_cols=163  Identities=32%  Similarity=0.577  Sum_probs=140.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            48999999999999999999999887776666665444 55667788888999999999999988899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|++++.+++.+..|+..+.......   +.|+++|+||+|+.+   +....++..+++...+ ++++++|+++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  154 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKSDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVED  154 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEEECTTTCTTHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEchhhhh---cccCHHHHHHHHHHcC-CeEEEecCCCCCCHHH
Confidence            99999999999999988887665422   689999999999976   3456777888888887 8999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028647          168 AFQCIAKNALK  178 (206)
Q Consensus       168 l~~~l~~~~~~  178 (206)
                      ++++|.+.+.+
T Consensus       155 l~~~l~~~~~~  165 (166)
T 2ce2_X          155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=192.43  Aligned_cols=170  Identities=34%  Similarity=0.540  Sum_probs=124.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999887777677665444 556778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcE
Q 028647           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.+++.+. .|+..+.....     ++|+++|+||+|+.....          +....+++.+++...+..++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  185 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY  185 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence            999999999999986 68877766543     789999999999976521          24566778888888874599


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      +++||++|.|++++|++|.+.+++.+.
T Consensus       186 ~~~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          186 LECSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999987543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=4.3e-32  Score=195.00  Aligned_cols=173  Identities=27%  Similarity=0.476  Sum_probs=111.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEEEEeCCe--EEEEEEEeCCChhhhccchhhhhccC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGA   81 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (206)
                      ...++|+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+||+||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46789999999999999999999988  666677777777777788888876  78999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG-GNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      |++++|+|++++.+++.+..|+..+....... ..++|+++|+||+|+.+ .  +....+++.+++..++ ++++++||+
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~  173 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDR-ERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNT-LDFFDVSAN  173 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCT-TSCCEEEEEEECC---------CCCHHHHHHHHHHTT-CEEEECCC-
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhccc-ccCCcEEEEEECcccchhh--ccCCHHHHHHHHHHcC-CEEEEeccC
Confidence            99999999999999999999998887765410 12789999999999976 4  5567788889998887 899999999


Q ss_pred             C-CCCHHHHHHHHHHHHHhcCcc
Q 028647          161 E-GINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       161 ~-~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      + |.|++++|++|.+.+.+....
T Consensus       174 ~~~~gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          174 PPGKDADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             ------CHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHh
Confidence            9 999999999999988765443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.6e-31  Score=189.82  Aligned_cols=169  Identities=27%  Similarity=0.496  Sum_probs=137.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45689999999999999999999999888777777766554 34677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcE
Q 028647           86 LVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.+++.+ ..|+..+.....     +.|+++|+||+|+.+...          +....++...++...+..++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY  176 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence            99999999999988 677777665442     789999999999976421          23566777888888875589


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +++||++|.|+++++++|.+.++...
T Consensus       177 ~~~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          177 LECSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.3e-31  Score=194.16  Aligned_cols=174  Identities=32%  Similarity=0.490  Sum_probs=144.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-eEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+...........+ ..+.+.+||+||++.+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            456789999999999999999999998888777777877766666655543 4478999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|+|++++.+++.+..|+..+......    +.|+++|+||+|+.+.  +....+....++...+ ++++++||++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g  159 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR--QKISKKLVMEVLKGKN-YEYFEISAKTA  159 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC------CCHHHHHHHTTTCC-CEEEEEBTTTT
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CcEEEEecCCC
Confidence            999999999999999999998888776643    6899999999999764  4566777777777776 89999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCcccc
Q 028647          163 INVEEAFQCIAKNALKSGEEEE  184 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~~~~~  184 (206)
                      .|++++|++|.+.+........
T Consensus       160 ~gv~~l~~~l~~~~~~~~~~~~  181 (218)
T 4djt_A          160 HNFGLPFLHLARIFTGRPDLIF  181 (218)
T ss_dssp             BTTTHHHHHHHHHHHCCTTCCB
T ss_pred             CCHHHHHHHHHHHHhccccccc
Confidence            9999999999999987655443

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.6e-30  Score=184.45  Aligned_cols=168  Identities=33%  Similarity=0.551  Sum_probs=133.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      -+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            4569999999999999999999999887766666665444 456778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+.......   ++|+++|+||+|+..   +....++.++++..++ ++++++|+++|.|+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  170 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG-IPFIETSAKTRQGV  170 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            9999999999999999988877665322   689999999999976   3456778888888887 79999999999999


Q ss_pred             HHHHHHHHHHHHhcCc
Q 028647          166 EEAFQCIAKNALKSGE  181 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~  181 (206)
                      ++++++|.+.+.+.+.
T Consensus       171 ~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          171 EDAFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=203.58  Aligned_cols=168  Identities=39%  Similarity=0.730  Sum_probs=138.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            34678999999999999999999999988887778888888888889999998999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+.....    .++|+++|+||+|+.+.  +....++...++..++ ++++++||++|.
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~vSA~~g~  181 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNAT  181 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-----CCSEEEEC-CCSSCC----CCCCSCC-CHHHHTTT-CCBCCCCC---H
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcc----CCCCEEEEEECccCCcc--ccCCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence            9999999999999999999888865443    27899999999999765  4455566677777776 889999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 028647          164 NVEEAFQCIAKNALK  178 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~  178 (206)
                      |++++|++|.+.+.+
T Consensus       182 gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          182 NVEQSFMTMAAEIKK  196 (199)
T ss_dssp             HHHHHHHHHTTTTTT
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999887754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.98  E-value=3e-31  Score=190.38  Aligned_cols=166  Identities=25%  Similarity=0.470  Sum_probs=138.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..+.++|+|+|.+|+|||||+++|....+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            356799999999999999999999998887777776654 4466677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCc
Q 028647           85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|+|++++.+++.+. .|+..+.....     +.|+++|+||+|+.+...          +....++...++...+..+
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            9999999999999986 78777766542     789999999999976521          2256778888888888677


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHH
Q 028647          154 YFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      ++++||++|.|++++|++|.+.+
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=1e-31  Score=195.02  Aligned_cols=172  Identities=28%  Similarity=0.591  Sum_probs=148.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      .....++|+|+|.+|+|||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++++|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            44667999999999999999999988777777778888888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+.....     ++|+++|+||+|+.+...    .++...++...+ ++++++||++|.
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~-~~~~~~Sa~~~~  160 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN-LQYYDISAKSNY  160 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSCSS----CGGGCCHHHHHT-CEEEECBGGGTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCccccccc----cHHHHHHHHHcC-CEEEEEeCCCCC
Confidence            9999999999999999999999887753     789999999999976532    123444556665 899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCccccc
Q 028647          164 NVEEAFQCIAKNALKSGEEEEI  185 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~~~~~  185 (206)
                      |++++|++|.+.+.........
T Consensus       161 gi~~l~~~l~~~l~~~~~~~~~  182 (221)
T 3gj0_A          161 NFEKPFLWLARKLIGDPNLEFV  182 (221)
T ss_dssp             TTTHHHHHHHHHHHTCTTCCEE
T ss_pred             CHHHHHHHHHHHHHhCcccccc
Confidence            9999999999999887655433

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=4.9e-31  Score=183.86  Aligned_cols=165  Identities=28%  Similarity=0.427  Sum_probs=137.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999887766667665544 3455677888899999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++.+++.+..|+..+......  ..+.|+++|+||+|+.+.  +....++...+....+ ++++++||++|.|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  155 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK  155 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEecCCCCcCHH
Confidence            99999999999888888777665421  127899999999999764  4455667777877776 899999999999999


Q ss_pred             HHHHHHHHHHH
Q 028647          167 EAFQCIAKNAL  177 (206)
Q Consensus       167 ~l~~~l~~~~~  177 (206)
                      +++++|.+.+.
T Consensus       156 ~l~~~l~~~~~  166 (172)
T 2erx_A          156 ELFQELLNLEK  166 (172)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHh
Confidence            99999998664

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=8.8e-32  Score=189.52  Aligned_cols=168  Identities=29%  Similarity=0.525  Sum_probs=125.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      ..+.++|+|+|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            34569999999999999999999999887766666665443 23344566677889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc--------ccccHHHHHHHHHhcCCCcEE
Q 028647           85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--------RVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      ++|+|++++.+++.+. .|+..+.....     +.|+++|+||+|+.+...        .....++..+++..++..+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  158 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI  158 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence            9999999999999987 68777766543     789999999999976521        113677888888888745899


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHh
Q 028647          156 ETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ++||++|.|++++|++|.+.++.
T Consensus       159 ~~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          159 ECSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EEECCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999998753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=1.3e-31  Score=190.89  Aligned_cols=168  Identities=23%  Similarity=0.327  Sum_probs=133.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCccceeEEEEEE-EeCCeEEEEEEEeCCChhhhc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      ..++.++|+|+|++|+|||||++.+.+. +...+           .++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            4567899999999999999999766654 33332           2344444444444 566778899999999999999


Q ss_pred             cchhhhhccCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH
Q 028647           72 SLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW  145 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  145 (206)
                      ..+..+++++|++++|+|++      +.++++.+..|+..+..     ...++|+++|+||+|+.+.    ...++++++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~~----~~~~~~~~~  159 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPDA----LPVEMVRAV  159 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTTC----CCHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhcccc----cCHHHHHHH
Confidence            99999999999999999999      45666777777666521     2238899999999999764    667888888


Q ss_pred             HHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          146 CASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       146 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      +...+..+++++||++|.|++++|++|.+.+.++..
T Consensus       160 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          160 VDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             HCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             HHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            888873399999999999999999999999987654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=3.2e-30  Score=184.08  Aligned_cols=173  Identities=20%  Similarity=0.332  Sum_probs=129.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      ...+.++|+|+|.+|+|||||+++|.+..+.. .+.++.+...  ..+...  .+.+.+||+||++.+...+..+++.+|
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            45678999999999999999999999998887 6777776433  333333  378999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCC----CCCCCCcEEEEEeCCCCCCCCcccccHHHH-HHHH-HhcCCCcEEE
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASP----SDPDNFPFVVLGNKIDVDGGNSRVVSEKKA-RAWC-ASKGNIPYFE  156 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~-~~~~~~~~~~  156 (206)
                      ++|+|+|++++++++.+..|+..+......    ....++|+++|+||+|+.+........+.. .... .. ..+++++
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  167 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD-HPFVIFA  167 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT-SCEEEEE
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC-CeeEEEE
Confidence            999999999999999998888887654210    001267999999999998753211111111 1111 22 3478999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          157 TSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      +||++|.|++++|++|.+.+.++..
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             eeCCCccCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999877543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=7.3e-30  Score=181.51  Aligned_cols=168  Identities=23%  Similarity=0.364  Sum_probs=132.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-hccchhhhhccCc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGAD   82 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d   82 (206)
                      .+.++|+++|.+|+|||||+++|.+..  +... .++++.+.....+.+++..+.+.+||++|.+. .......+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999999633  2332 33456666677788899889999999999765 4445667788899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|||++++++++.+..|...+......   .+.|+++|+||+|+...  +....++...++...+ ++++++||++|
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~---~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~SA~~g  156 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQT---EDIPIILVGNKSDLVRX--REVSVSEGRAXAVVFD-XKFIETSAAVQ  156 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCeEEEEEechhhhcc--ccccHHHHHHHHHHhC-CceEEeccccC
Confidence            999999999999999998888777654321   27899999999999753  4556677777777776 78999999999


Q ss_pred             CCHHHHHHHHHHHHHhcC
Q 028647          163 INVEEAFQCIAKNALKSG  180 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~  180 (206)
                      .|++++|++|.+.+....
T Consensus       157 ~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          157 HNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhc
Confidence            999999999999886543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.5e-30  Score=184.37  Aligned_cols=163  Identities=23%  Similarity=0.386  Sum_probs=128.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++..  +...+  +.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            3567999999999999999999999988877777777766543  33443  6789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeecc
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~  160 (206)
                      ++|+|++++++++.+..|+..+.....   ..++|+++|+||+|+.+...    .++..+....    ...++++++||+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~  167 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGALD----EKELIEKMNLSAIQDREICCYSISCK  167 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccCCC----HHHHHHHhChhhhccCCeeEEEEECC
Confidence            999999999999999888887765321   12789999999999976421    2222222111    123679999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 028647          161 EGINVEEAFQCIAKNALK  178 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~  178 (206)
                      +|.|++++|++|.+.+..
T Consensus       168 ~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          168 EKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             TCTTHHHHHHHHHHTCC-
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999987644

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=7.7e-30  Score=180.30  Aligned_cols=162  Identities=18%  Similarity=0.323  Sum_probs=128.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.++|+++|++|+|||||+++|.+.. ...+.++.+..  ...+.+++  ..+.+||+||++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999887 55566666533  34455554  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~  161 (206)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+.+..    ..++..+....    ...++++++||++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQDLPGAL----SCNAIQEALELDSIRSHHWRIQGCSAVT  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh---cCCCcEEEEEeCccCCCCC----CHHHHHHHhChhhccCCceEEEEeeCCC
Confidence            99999999999999888887765422   1278999999999997642    22333332221    1236899999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 028647          162 GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~  179 (206)
                      |.|+++++++|.+.+.++
T Consensus       164 ~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          164 GEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999998664

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=7.7e-30  Score=177.75  Aligned_cols=161  Identities=20%  Similarity=0.348  Sum_probs=126.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.++|+|+|++|+|||||+++|..+.+. ...++.+  .....+.+++  ..+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            45699999999999999999999988765 3445544  3344555554  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH-----HHhcCCCcEEEeecc
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW-----CASKGNIPYFETSAK  160 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~  160 (206)
                      +|+|++++.+++....|+..+.....   ..+.|+++|+||+|+.+...    .++..+.     .... +++++++||+
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~Sa~  151 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQAMT----SSEMANSLGLPALKDR-KWQIFKTSAT  151 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCC----HHHHHHHHTGGGCTTS-CEEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCCCC----HHHHHHHhCchhccCC-ceEEEECcCC
Confidence            99999999999988888877755421   12789999999999976521    1222222     1122 3689999999


Q ss_pred             CCCCHHHHHHHHHHHHHhc
Q 028647          161 EGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~  179 (206)
                      +|.|+++++++|.+.+.++
T Consensus       152 ~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          152 KGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhhc
Confidence            9999999999999988653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3e-30  Score=182.63  Aligned_cols=164  Identities=18%  Similarity=0.264  Sum_probs=124.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|.+|+|||||+++|.++.+. .+.++.+..  ...+.+++  ..+.+||+||++.+...+..+++++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999987765 445555433  33445555  77899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~  161 (206)
                      +|+|++++++++....|+..+.....   ..+.|+++|+||+|+.+..    ..+++.+....    ..+++++++||++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  161 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKECM----TVAEISQFLKLTSIKDHQWHIQACCALT  161 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCCC----CHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence            99999999999999998888765421   1278999999999997642    23334333321    1236899999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCc
Q 028647          162 GINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~~~  181 (206)
                      |.|+++++++|.+.+....+
T Consensus       162 g~gi~~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRLKIRLE  181 (187)
T ss_dssp             TBTHHHHHHHHHHHHCC---
T ss_pred             CcCHHHHHHHHHHHHHHHhh
Confidence            99999999999998855433

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3.8e-30  Score=178.18  Aligned_cols=158  Identities=17%  Similarity=0.324  Sum_probs=120.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      ++|+++|++|+|||||+++|.++.+.. +.++.+  .....+...+  +.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 455554  3333444444  67899999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-h---cCCCcEEEeeccCCCC
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-S---KGNIPYFETSAKEGIN  164 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~S~~~~~~  164 (206)
                      |++++++++....|+..+.....   ..+.|+++|+||+|+.+...    .++..+... .   ...++++++||++|.|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  148 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGDG  148 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             ECCCHHHHHHHHHHHHHHHhchh---hcCCeEEEEEECcCCcCCCC----HHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence            99999999998888887765321   12789999999999976421    222222111 1   1235799999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028647          165 VEEAFQCIAKNALK  178 (206)
Q Consensus       165 i~~l~~~l~~~~~~  178 (206)
                      +++++++|.+.+.+
T Consensus       149 i~~l~~~l~~~i~~  162 (164)
T 1r8s_A          149 LYEGLDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=5e-30  Score=180.69  Aligned_cols=162  Identities=22%  Similarity=0.343  Sum_probs=123.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+++|++|+|||||+++|.+..+. .+.++.+.  ....+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999987542 33445443  334455554  67899999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~  161 (206)
                      +|+|++++++++....|+..+.....   ..+.|+++|+||+|+.+...    .+++.+....    ...++++++||++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEK---LSCVPVLIFANKQDLLTAAP----ASEIAEGLNLHTIRDRVWQIQSCSALT  161 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGG---GTTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECcCcccCCC----HHHHHHHhCchhccCCceEEEEccCCC
Confidence            99999999999998888877654321   22789999999999976521    2222222111    1236799999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 028647          162 GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~  179 (206)
                      |.|++++|++|.+.+.++
T Consensus       162 g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          162 GEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             CTTHHHHHHHHHHTC---
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999877543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.2e-29  Score=181.30  Aligned_cols=158  Identities=20%  Similarity=0.315  Sum_probs=120.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+++|++|+|||||+++|.++.+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999987764 344454443  34555666  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----------------
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----------------  149 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----------------  149 (206)
                      +|+|++++++++....|+..+.....   ..++|+++|+||+|+.+.    ...+++.++....                
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPEA----ISEERLREMFGLYGQTTGKGSVSLKELNA  170 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTTC----CCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCcccc----CCHHHHHHHhCcccccccccccccccccC
Confidence            99999999999999998888765422   127899999999999753    4456666665422                


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          150 GNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      ..++++++||++|.|++++|++|.+.
T Consensus       171 ~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          171 RPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            34679999999999999999999764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.9e-29  Score=177.35  Aligned_cols=164  Identities=18%  Similarity=0.306  Sum_probs=128.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ..+.++|+|+|.+|+|||||+++|.+.. +...+.++.+  .....+.+++  ..+.+||+||++.+...+..+++++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3567999999999999999999999877 4555555555  4455555665  678999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH--hc--CCCcEEEeec
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA--SK--GNIPYFETSA  159 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~S~  159 (206)
                      +++|+|++++.+++.+..|+..+...... ...+.|+++|+||+|+.+.    ...+++.++..  .+  .+++++++||
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  168 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA----VTSVKVSQLLCLENIKDKPWHICASDA  168 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC----CCHHHHHHHhChhhccCCceEEEEccC
Confidence            99999999999999998888887665321 0127899999999999764    23444555442  21  2468999999


Q ss_pred             cCCCCHHHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~  177 (206)
                      ++|.|+++++++|.+.+.
T Consensus       169 ~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          169 IKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TTTBTHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.3e-28  Score=175.97  Aligned_cols=168  Identities=38%  Similarity=0.681  Sum_probs=142.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999999888788888888888888889998899999999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|+.+..+++.+..|+..+.....    .+.|+++|+||+|+.+.  +....++++.++...+ +.++++|++++.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~~d~Sal~~~~i  155 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNV  155 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            99999999998888888776654422    26799999999999754  4455677888887776 88999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 028647          166 EEAFQCIAKNALKSG  180 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~  180 (206)
                      ++++++|.+.+.+..
T Consensus       156 ~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          156 EEAFKNILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=6.7e-30  Score=181.69  Aligned_cols=161  Identities=16%  Similarity=0.315  Sum_probs=119.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|++|+|||||+++|..+.+. .+.++.+  .....+...+  +.+.+||+||++.+...+..+++++|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            46799999999999999999999987765 3344444  3344455554  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~  161 (206)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+.+..    ..+++.+....    ...++++++||++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~SA~~  174 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDE---LRDAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRSRTWYVQATCATQ  174 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccc---cCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEECcCCC
Confidence            99999999999999888887765321   1278999999999997642    12222222111    1135799999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 028647          162 GINVEEAFQCIAKNALK  178 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~  178 (206)
                      |.|+++++++|.+.+.+
T Consensus       175 g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          175 GTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             TBTHHHHHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            99999999999988743

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=2.6e-29  Score=178.38  Aligned_cols=158  Identities=23%  Similarity=0.335  Sum_probs=125.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+++|++|+|||||+++|.++.+. .+.++.+..  ...+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999988765 344554443  45566666  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-----------CCCcE
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-----------GNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----------~~~~~  154 (206)
                      +|+|++++++++....|+..+.....   ..+.|+++|+||+|+.+.    ...+++.++....           ..+++
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA----VSEAELRSALGLLNTTGSQRIEGQRPVEV  168 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC----CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcCC----CCHHHHHHHhCCccccccccccccceEEE
Confidence            99999999999999998888765422   127899999999999763    3455555554321           34679


Q ss_pred             EEeeccCCCCHHHHHHHHHHH
Q 028647          155 FETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      +++||++|.|++++|++|.+.
T Consensus       169 ~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          169 FMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEeECCcCCCHHHHHHHHHhh
Confidence            999999999999999999753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=6.5e-30  Score=180.07  Aligned_cols=160  Identities=19%  Similarity=0.288  Sum_probs=122.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ...+.++|+|+|.+|+|||||+++|.+..+ ....++.+...  ..+.+++  ..+.+||+||++.+...+..+++++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            345679999999999999999999998876 34455555333  3444555  778999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeec
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSA  159 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~  159 (206)
                      +++|+|++++++++.+..|+..+.....   ..++|+++|+||+|+.+..    ..+++.+....    ...++++++||
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa  164 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKECM----TVAEISQFLKLTSIKDHQWHIQACCA  164 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccCC----CHHHHHHHhCcccccCCceEEEEccC
Confidence            9999999999999999888887765421   1278999999999997642    23333333211    12358999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKN  175 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~  175 (206)
                      ++|.|++++|++|.+.
T Consensus       165 ~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          165 LTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTTBTHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHhh
Confidence            9999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=1.8e-29  Score=178.88  Aligned_cols=162  Identities=17%  Similarity=0.292  Sum_probs=125.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.++|+|+|++|+|||||+++|..+.+.. +.++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998776543 44555433  33445554  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~  161 (206)
                      +|+|++++++++....|+..+.....   ..+.|+++|+||+|+.+...    .++..+...    ...+++++++||++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~  167 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDE---LRKSLLLIFANKQDLPDAAS----EAEIAEQLGVSSIMNRTWTIVKSSSKT  167 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCST---TTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhh---cCCCeEEEEEECCCCcCCCC----HHHHHHHhChhhccCCceEEEEccCCC
Confidence            99999999999988888777754322   23789999999999976421    222222211    11135799999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 028647          162 GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~  179 (206)
                      |.|+++++++|.+.+.+.
T Consensus       168 ~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          168 GDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CTTHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhc
Confidence            999999999999998654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=8.2e-30  Score=179.61  Aligned_cols=162  Identities=19%  Similarity=0.319  Sum_probs=123.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.++|+++|++|+|||||+++|.++.+ ..+.++.+..  ...+.+++  ..+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998766 3445555533  34445555  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----CCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----GNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S~~~  161 (206)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+.+..    ..+++.+.....    ..++++++||++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  163 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEE---LQDAALLVFANKQDQPGAL----SASEVSKELNLVELKDRSWSIVASSAIK  163 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSST---TSSCEEEEEEECTTSTTCC----CHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChh---hCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEEccCCC
Confidence            99999999999999888887765431   2378999999999997642    233333333211    125799999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 028647          162 GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~  179 (206)
                      |.|+++++++|.+.+.++
T Consensus       164 ~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          164 GEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhc
Confidence            999999999999988653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1.4e-29  Score=178.86  Aligned_cols=166  Identities=26%  Similarity=0.428  Sum_probs=121.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEEEEe---CCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      .++|+|+|++|||||||+++|.+.  .+...+.++.+.++....+.+   ++..+.+.+||++|++.+......++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            489999999999999999999984  444556677776665555443   234678999999999999988889999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc---HHHHHHHHHhcCCCc----E
Q 028647           83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS---EKKARAWCASKGNIP----Y  154 (206)
Q Consensus        83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~----~  154 (206)
                      ++++|+|++++ .+++.+..|+..+.....     +.|+++|+||+|+.+.  +...   .+....++...+ .+    +
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~  153 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRG-FPAIRDY  153 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-----TCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTT-SCEEEEE
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-----CCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcC-Ccchhhe
Confidence            99999999987 578888899888766532     7899999999999753  2221   233445554455 55    9


Q ss_pred             EEeeccCCC-CHHHHHHHHHHHHHhcCc
Q 028647          155 FETSAKEGI-NVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       155 ~~~S~~~~~-~i~~l~~~l~~~~~~~~~  181 (206)
                      +++||+++. +++++++.|.+.+.+.+.
T Consensus       154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          154 HFVNATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             EECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             EEEecccCchhHHHHHHHHHHHHhcccc
Confidence            999999997 999999999998876443

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.9e-28  Score=187.88  Aligned_cols=167  Identities=25%  Similarity=0.490  Sum_probs=142.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+++|.+|+|||||+++|....+...+.++++..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3468999999999999999999999888777777765544 556678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcE
Q 028647           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.+++.+. .|+..+.....     ++|+++|+||+|+.+..          .+....++...++...+..++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  306 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  306 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence            999999999999886 67777765543     78999999999996542          145667888889888875599


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHh
Q 028647          155 FETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +++||++|.|++++|+.|.+.++.
T Consensus       307 ~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          307 LECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEecCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999999998865

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=9.6e-28  Score=170.41  Aligned_cols=164  Identities=38%  Similarity=0.706  Sum_probs=142.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|...+...+..++..+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            56799999999999999999999999888888899998888888999998888999999999988888888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|..+..+++.+..|+..+.....    .+.|+++++||+|+.+.  +....++++.++...+ +.++++|+.++.|+
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~ld~Sald~~~v  179 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNG-LSFIETSALDSTNV  179 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999988888888776654322    16799999999999754  4455677888887776 88999999999999


Q ss_pred             HHHHHHHHHHH
Q 028647          166 EEAFQCIAKNA  176 (206)
Q Consensus       166 ~~l~~~l~~~~  176 (206)
                      +++++.|.+.+
T Consensus       180 ~~l~~~l~~~i  190 (191)
T 1oix_A          180 EAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=4.9e-29  Score=177.76  Aligned_cols=163  Identities=18%  Similarity=0.270  Sum_probs=120.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--EEEeC-CeEEEEEEEeCCChhhhccch---hhh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK--EVQFE-DRLFTLQIWDTAGQERFQSLG---VAF   77 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~   77 (206)
                      ..++.++|+++|.+|||||||++++.+.... .  ++.+.+....  ...+. +..+.+.+||++|++.+....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            4567899999999999999999988774322 2  3333333222  22232 455789999999999987776   789


Q ss_pred             hccCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----cccccHHHHHHHHH---
Q 028647           78 YRGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-----SRVVSEKKARAWCA---  147 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~---  147 (206)
                      ++++|++++|||++++  +++..+..|+..+.....     +.|+++|+||+|+.+..     .+....++..+++.   
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence            9999999999999997  666777777776643332     78999999999987632     13445555666766   


Q ss_pred             -hcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          148 -SKGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       148 -~~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                       ..+ ++++++||++ .|++++|+.|++.+
T Consensus       168 ~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLH-LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence             444 7899999999 99999999999865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=3.1e-31  Score=190.25  Aligned_cols=165  Identities=25%  Similarity=0.500  Sum_probs=134.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            5679999999999999999999998887766666655444 445566777788899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcE
Q 028647           86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.+++.+. .|+..+.....     ++|+++|+||+|+.+...          +....++...++...+..++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
Confidence            999999999998886 67666654332     789999999999976421          13455667777777764489


Q ss_pred             EEeeccCCCCHHHHHHHHHHHH
Q 028647          155 FETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      +++||++|.|+++++++|.+.+
T Consensus       182 ~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=3.5e-28  Score=175.50  Aligned_cols=168  Identities=18%  Similarity=0.270  Sum_probs=116.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe-EEEEEEEeCCChhhhcc-chhhhhccC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGA   81 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~   81 (206)
                      +..+.++|+|+|++|+|||||+++|++..+...+.++ +.+...  +.+++. .+.+.+|||||++.+.. .+..+++.+
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   79 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA   79 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence            3456799999999999999999999998877665433 333333  555543 47899999999998887 778889999


Q ss_pred             cEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-------------
Q 028647           82 DCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-------------  147 (206)
Q Consensus        82 d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------------  147 (206)
                      |++++|+|+++.. ++.....++..++.... ....++|+++|+||+|+.+........+.+.+...             
T Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~  158 (214)
T 2fh5_B           80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL  158 (214)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred             CEEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence            9999999999853 45555555444433211 11126899999999999876433333333333222             


Q ss_pred             --------hcC-------------CCcEEEeeccCC------CCHHHHHHHHHHH
Q 028647          148 --------SKG-------------NIPYFETSAKEG------INVEEAFQCIAKN  175 (206)
Q Consensus       148 --------~~~-------------~~~~~~~S~~~~------~~i~~l~~~l~~~  175 (206)
                              ..+             .++|+++||++|      .|++++|++|.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                    011             467999999999      9999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=8.3e-28  Score=168.53  Aligned_cols=163  Identities=19%  Similarity=0.187  Sum_probs=122.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      ...+.++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++.  .+.+|||||++.+...+...+..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            3456799999999999999999999998887777777666666666777774  56799999999999998889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC--------CCcEE
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG--------NIPYF  155 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~  155 (206)
                      +++|+|++++...... ..+..+..       .++|+++|+||+|+.+..     .++.........        ..+++
T Consensus        82 ~i~v~d~~~~~~~~~~-~~l~~~~~-------~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  148 (178)
T 2lkc_A           82 VILVVAADDGVMPQTV-EAINHAKA-------ANVPIIVAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIFC  148 (178)
T ss_dssp             EEEEEETTCCCCHHHH-HHHHHHGG-------GSCCEEEEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred             EEEEEECCCCCcHHHH-HHHHHHHh-------CCCCEEEEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccEE
Confidence            9999999884322222 12222211       178999999999997641     223333222221        14799


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      ++||++|.|+++++++|.+.+.....
T Consensus       149 ~~Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          149 KLSAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             EEecCCCCCHHHHHHHHHHhhhhhcc
Confidence            99999999999999999998866544

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.7e-28  Score=185.81  Aligned_cols=162  Identities=16%  Similarity=0.309  Sum_probs=119.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.++|+|+|.+|+|||||+++|.+..+... .++.+..  ...+...+  +.+.||||||++.+...+..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3467999999999999999999998776433 3444433  33344444  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~  161 (206)
                      +|||++++.+++.+..++..+.....   ..++|+++|+||+|+.+...    .+++......    ...++++++||++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vSAk~  310 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATS  310 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhc---cCCCeEEEEEECccCCcccC----HHHHHHHhchhhhhcCCCEEEEEECCC
Confidence            99999999999998887777654332   23789999999999986532    2222222211    1235799999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 028647          162 GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~  179 (206)
                      |.|++++|++|.+.+.++
T Consensus       311 g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          311 GDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             TBTHHHHHHHHHHHHTC-
T ss_pred             CcCHHHHHHHHHHHHHhc
Confidence            999999999999988543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=2.2e-27  Score=173.06  Aligned_cols=172  Identities=19%  Similarity=0.099  Sum_probs=117.9

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh---------cc
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QS   72 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~   72 (206)
                      |......++|+|+|.+|+|||||+++|++..+.....+..+...........+  ..+.+|||||+...         ..
T Consensus        23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence            33345679999999999999999999998876533344444445444445555  57899999998321         11


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccH---HHHHHHHH
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSE---KKARAWCA  147 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~  147 (206)
                      .+..++..+|++++|+|++++.+++.  ...|+..+....     .+.|+++|+||+|+.+.  +....   +....+..
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~  173 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-----SNKSIVIGFNKIDKCNM--DSLSIDNKLLIKQILD  173 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC------CCCEEEEEECGGGCC----CCCHHHHHHHHHHHH
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-----cCCcEEEEEeCcccCCc--hhhHHHHHHHHHHHHH
Confidence            22344677899999999999877542  234555444321     27899999999999865  22322   24555555


Q ss_pred             hcC-CCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647          148 SKG-NIPYFETSAKEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       148 ~~~-~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      ..+ .++++++||++|.|++++|++|.+.+......
T Consensus       174 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          174 NVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             HCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            442 26899999999999999999999998766543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=1.5e-27  Score=169.72  Aligned_cols=161  Identities=20%  Similarity=0.198  Sum_probs=109.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccchh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~   75 (206)
                      ...++|+|+|++|+|||||+++|++..+.....++.+.+........++   .+.+|||||          ++.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            4579999999999999999999998875555455544444333344443   478999999          677777777


Q ss_pred             hhhccC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCC
Q 028647           76 AFYRGA---DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        76 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      .+++.+   |++++|+|++++.++.... ++..+..       .+.|+++|+||+|+.+........+++.+........
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            777776   9999999999877665532 1122211       1789999999999987532222234444433333347


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      +++++||++|.|+++++++|.+.+.
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            8999999999999999999998763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=1.4e-27  Score=165.65  Aligned_cols=153  Identities=13%  Similarity=0.176  Sum_probs=111.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhhc--
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR--   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   79 (206)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .....+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999998776555555555555555566666  578999999987664      23344554  


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      ++|++++|+|+++.+.   ...|+..+...       +.|+++|+||+|+....  .... +..++...++ .+++++||
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~~-~~~~~~SA  146 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLMEM-------GANLLLALNKMDLAKSL--GIEI-DVDKLEKILG-VKVVPLSA  146 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHHT-------TCCEEEEEECHHHHHHT--TCCC-CHHHHHHHHT-SCEEECBG
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHhc-------CCCEEEEEEchHhcccc--Chhh-HHHHHHHHhC-CCEEEEEc
Confidence            7999999999998643   34455555431       68999999999986431  1211 3556666676 88999999


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKNA  176 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~  176 (206)
                      ++|.|++++|++|.+.+
T Consensus       147 ~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          147 AKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGTBSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=181.29  Aligned_cols=167  Identities=25%  Similarity=0.320  Sum_probs=120.6

Q ss_pred             ccceeEEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCcc-ceeEEEEEE--------------EeCCeE
Q 028647            4 RRRTLLKVIILGDS---------GVGKTSLMNQYVN---KKFSNQYKATI-GADFLTKEV--------------QFEDRL   56 (206)
Q Consensus         4 ~~~~~~~i~viG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~   56 (206)
                      ...+.++|+|+|.+         |||||||+++|++   ..+...+.+++ +.++....+              .+++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            34567999999999         9999999999998   45555555554 333322221              135666


Q ss_pred             EEEEEEe-----------------------CCChhhhccchhhhhc---------------------cCcEEEEEEECCC
Q 028647           57 FTLQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVNS   92 (206)
Q Consensus        57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   92 (206)
                      +.+.+||                       ++|++.+...+..+++                     ++|++++|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       5555556666666665                     7999999999999


Q ss_pred             h--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647           93 M--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus        93 ~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      +  .+++.+..|+..+......   .++|+++|+||+|+...  +..  ++..+++....+++++++||++|.|++++|+
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~---~~~piilV~NK~Dl~~~--~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAK---TKKPIVVVLTKCDEGVE--RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHH---TTCCEEEEEECGGGBCH--HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhcc---CCCCEEEEEEccccccc--HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence            8  9999999998888765211   17899999999999653  222  5677777665458999999999999999999


Q ss_pred             HHHHHHH
Q 028647          171 CIAKNAL  177 (206)
Q Consensus       171 ~l~~~~~  177 (206)
                      +|.+.+.
T Consensus       248 ~l~~~l~  254 (255)
T 3c5h_A          248 TLVQLID  254 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998763

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=4.1e-27  Score=178.55  Aligned_cols=168  Identities=21%  Similarity=0.283  Sum_probs=128.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-----ccchhhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFY   78 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   78 (206)
                      ..+||+++|.+|+|||||+++|+++....   .+.+|.+..  ...+.+.+ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~--~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE--HSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEE--EEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceE--EEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            35899999999999999999998874331   334444433  33444544 478999999999888     67788889


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc----ccHHHHHHHHHhcC--CC
Q 028647           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV----VSEKKARAWCASKG--NI  152 (206)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~--~~  152 (206)
                      +++|++++|+|++++++++.+..|...+......  .+++|+++|+||+|+.+...+.    ...+++.+++..++  .+
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~  156 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL  156 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence            9999999999999999999887765444332211  1278999999999998743354    56678888888886  38


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +++++||++ .++.++|..+++.++...
T Consensus       157 ~~~~tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          157 IGFPTSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             EEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             EEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence            999999999 899999999888665433

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=1e-26  Score=165.20  Aligned_cols=159  Identities=20%  Similarity=0.241  Sum_probs=117.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccchh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~   75 (206)
                      ...++|+|+|++|+|||||+++|++..+. ...++.+.+..........   .+.+||+||          ++.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            45689999999999999999999988733 2333333333233333333   467999999          666777777


Q ss_pred             hhhccC---cEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647           76 AFYRGA---DCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG  150 (206)
Q Consensus        76 ~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      .+++.+   |++++|+|+++..+.  ..+..|+...          +.|+++|+||+|+.+........+++.+++...+
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            777665   999999999875432  2233343332          6899999999999876556666777788887767


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          151 NIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       151 ~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      .++++++||++|.|++++|++|.+.+.+
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            7899999999999999999999988743

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=5.2e-26  Score=172.51  Aligned_cols=167  Identities=20%  Similarity=0.131  Sum_probs=127.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc----------c
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------S   72 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~   72 (206)
                      +..+.-.|+++|.+|+|||||+|+|++..+.. ...+.++........... ...++.||||||+....          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            45677899999999999999999999988763 334444444444444444 13678999999975433          5


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-CC
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-GN  151 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~  151 (206)
                      ....+++.+|++++|+|++++.+......|+..+...       +.|+++|+||+|+...  .....+....+...+ ..
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-------~~pvilV~NK~Dl~~~--~~~~~~~~~~l~~~~~~~  155 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-------NKPVIVVINKIDKIGP--AKNVLPLIDEIHKKHPEL  155 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-------CCCEEEEEECGGGSSS--GGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-------CCCEEEEEECccCCCC--HHHHHHHHHHHHHhccCC
Confidence            5667788999999999999988777766656655431       7899999999999743  445566777777776 45


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          152 IPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       152 ~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      .+++++||++|.|+++++++|.+.+....
T Consensus       156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          156 TEIVPISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence            78999999999999999999999886543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=2e-26  Score=160.96  Aligned_cols=155  Identities=22%  Similarity=0.279  Sum_probs=112.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (206)
                      +.++|+++|++|+|||||+++|.+..+. ....++++.++....+.+++.  .+.+|||||+..+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987643 233455556666677777774  4789999997543211        1245


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ++.+|++++|+|++++.+++ ...|+..+.....    .++|+++|+||+|+.+.... .        .. ..+.+++++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~-~--------~~-~~~~~~~~~  145 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP----AKLPITVVRNKADITGETLG-M--------SE-VNGHALIRL  145 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC----TTCCEEEEEECHHHHCCCCE-E--------EE-ETTEEEEEC
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc----cCCCEEEEEECccCCcchhh-h--------hh-ccCCceEEE
Confidence            78999999999999987765 3466666655432    27899999999998653211 1        01 123789999


Q ss_pred             eccCCCCHHHHHHHHHHHHHh
Q 028647          158 SAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ||++|.|++++|++|.+.+..
T Consensus       146 SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          146 SARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             CTTTCTTHHHHHHHHHHHC--
T ss_pred             eCCCCCCHHHHHHHHHHHhhh
Confidence            999999999999999987643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=2.3e-26  Score=170.28  Aligned_cols=156  Identities=21%  Similarity=0.171  Sum_probs=118.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc------hhhhh-
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY-   78 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~-   78 (206)
                      .+.++|+++|.+|+|||||+++|++..+.....++.+.......+...+  ..+.+||+||+..+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            3568999999999999999999998776544455556555555555555  67899999998776542      24454 


Q ss_pred             -ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647           79 -RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        79 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                       ..+|++++|+|+++.++..   .|...+...       ++|+++|+||+|+.......   .+..++...++ ++++++
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~~~i~---~~~~~l~~~lg-~~vi~~  146 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKKTGMK---IDRYELQKHLG-IPVVFT  146 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHHTTCC---BCHHHHHHHHC-SCEEEC
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCccchH---HHHHHHHHHcC-CCEEEE
Confidence             5799999999999875433   344444321       78999999999986532222   23566777777 899999


Q ss_pred             eccCCCCHHHHHHHHHHHHH
Q 028647          158 SAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ||++|.|+++++++|.+.+.
T Consensus       147 SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          147 SSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHhh
Confidence            99999999999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=9.9e-27  Score=164.66  Aligned_cols=159  Identities=22%  Similarity=0.256  Sum_probs=114.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC-----------hhhhccchhhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF   77 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~   77 (206)
                      ++|+|+|++|+|||||+++|.+..+...+.++.+....  .+.+.    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999998877666666554333  23333    578999999           66677777777


Q ss_pred             hcc-CcEEEEEEECCChhhHHHH-HHHHHH--------HHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH
Q 028647           78 YRG-ADCCVLVYDVNSMKSFDNL-NNWREE--------FLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA  147 (206)
Q Consensus        78 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  147 (206)
                      ++. ++++++++++.+..+++.+ ..|...        +......   .++|+++|+||+|+...  .   .+...+++.
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~---~~~~~~~~~  147 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN--V---QEVINFLAE  147 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC--H---HHHHHHHHH
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCc--H---HHHHHHHHH
Confidence            766 6666666666666666555 444331        2111111   17899999999999765  2   556677777


Q ss_pred             hcCC------CcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          148 SKGN------IPYFETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       148 ~~~~------~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      .++.      .+++++||++|.|++++|++|.+.+.+..+
T Consensus       148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            7662      247999999999999999999999876544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=3.7e-26  Score=157.53  Aligned_cols=151  Identities=21%  Similarity=0.211  Sum_probs=105.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchhhhhcc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   80 (206)
                      ++|+++|++|+|||||+++|.+..+. ....++.+.+.....+..++.  .+.+||+||+..       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987754 233444455555666666664  678999999876       34455667889


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +|++++|+|++++.+...  .++..+...      .+.|+++|+||+|+.+.      .++..++. .++..+++++||+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~------~~~~~~~~-~~~~~~~~~~Sa~  144 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKH------ELYLGPLY-GLGFGDPIPTSSE  144 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGG------GGGCGGGG-GGSSCSCEECBTT
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccc------hHhHHHHH-hCCCCCeEEEecc
Confidence            999999999998644322  222222222      17899999999998754      12233344 4553489999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028647          161 EGINVEEAFQCIAKNA  176 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~  176 (206)
                      +|.|+++++++|.+.+
T Consensus       145 ~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          145 HARGLEELLEAIWERL  160 (161)
T ss_dssp             TTBSHHHHHHHHHHHC
T ss_pred             cCCChHHHHHHHHHhC
Confidence            9999999999998864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=2.9e-26  Score=162.08  Aligned_cols=158  Identities=13%  Similarity=0.167  Sum_probs=120.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhhc-
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR-   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   79 (206)
                      +.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .....++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            568999999999999999999998765555556666666666677766  678999999987764      23445554 


Q ss_pred             -cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647           80 -GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        80 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                       .+|++++|+|.++.   +....|+..+..       .+.|+++|+||+|+....  ... +...++...++ .+++++|
T Consensus        84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~--~~~-~~~~~~~~~~~-~~~~~~S  149 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL---ERNLYLTLQLME-------MGANLLLALNKMDLAKSL--GIE-IDVDKLEKILG-VKVVPLS  149 (188)
T ss_dssp             HCCSEEEEEEEGGGH---HHHHHHHHHHHT-------TTCCEEEEEECHHHHHHT--TCC-CCHHHHHHHHT-SCEEECB
T ss_pred             cCCCEEEEEecchhH---HHHHHHHHHHHh-------cCCCEEEEEEhhhccccc--cch-HHHHHHHHHhC-CCeEEEE
Confidence             49999999999763   445566655543       178999999999986532  111 34566667776 8999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHhcC
Q 028647          159 AKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ++++.|++++++++.+.+....
T Consensus       150 a~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          150 AAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GGGTBSHHHHHHHHHHHHTTC-
T ss_pred             ecCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999986654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.94  E-value=9.9e-27  Score=171.95  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=116.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc----------chhhhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY   78 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   78 (206)
                      .+|+++|.+|+|||||+|+|++........++.+.+.....+.+.+.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999988765556677777777777777774  789999999876653          344555


Q ss_pred             --ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           79 --RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                        ..+|++++|+|+++.+....+..+   +..    .   ++|+++|+||+|+.+.......   ...+...++ +++++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~----~---~~pvilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~vi~  145 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE----L---GKPVVVALNMMDIAEHRGISID---TEKLESLLG-CSVIP  145 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT----S---CSCEEEEEECHHHHHHTTCEEC---HHHHHHHHC-SCEEE
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HHH----c---CCCEEEEEEChhcCCcCCcHHH---HHHHHHHcC-CCEEE
Confidence              789999999999987654443332   221    1   7899999999998754322222   344556666 89999


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~  175 (206)
                      +||++|.|+++++++|.+.
T Consensus       146 ~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          146 IQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CBGGGTBSHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999999887

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=1.1e-26  Score=188.47  Aligned_cols=166  Identities=24%  Similarity=0.347  Sum_probs=122.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE------E--EeCCeEEEEEEEeCCChhhhccchhh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------V--QFEDRLFTLQIWDTAGQERFQSLGVA   76 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~~   76 (206)
                      ..+.++|+++|.+|||||||+++|++..+.....++.+.++....      +  ..++..+.+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999999888777788777665442      1  12233578999999999999999999


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++++|+|+++.+   ....|+..+.....     +.|+++|+||+|+.+.  +....++.+++....+ .++++
T Consensus       118 ~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~  186 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS--YNIEQKKINERFPAIE-NRFHR  186 (535)
T ss_dssp             HHHSSEEEEEEECGGGGG---GHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT--CCCCHHHHHHHCGGGT-TCEEE
T ss_pred             HccCCcEEEEEEeCCCch---hHHHHHHHHHHhCC-----CCCEEEEEECCCcccc--cccCHHHHHHHHHhcC-CceEE
Confidence            999999999999998764   45667777766543     6899999999999865  4556777888877776 78999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          157 TSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      +||++|.|++++++.|.+.+.....
T Consensus       187 vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          187 ISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             CCC-----CTTHHHHHHHHHTCTTS
T ss_pred             EecCcccCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999877554

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.94  E-value=2.9e-26  Score=166.40  Aligned_cols=166  Identities=14%  Similarity=0.064  Sum_probs=110.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCCh----------hhhcc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQS   72 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~   72 (206)
                      ...++|+|+|.+|+|||||+++|++...  .....+..+.....  ..+. .....+.+|||||.          +.+..
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            4568999999999999999999998863  22223333333322  2232 22356889999993          44455


Q ss_pred             chhhhhcc---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647           73 LGVAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK  149 (206)
Q Consensus        73 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (206)
                      ....++..   +|++++|+|++++.+. ....++..+..       .++|+++|+||+|+..........+...+....+
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence            55566655   7889999999875442 22333333332       1789999999999986432222333444444442


Q ss_pred             ------CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          150 ------GNIPYFETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       150 ------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                            ...+++++||++|.|+++++++|.+.+.....
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence                  45789999999999999999999998865443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=6.2e-27  Score=176.38  Aligned_cols=167  Identities=18%  Similarity=0.194  Sum_probs=120.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc---chhhhhccCcE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC   83 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~   83 (206)
                      ||+++|..|+|||||++++..+....   ...+|.+.+...    ++ ..+.+++|||+|++++..   ....+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   245666655532    22 337899999999999975   35789999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-----ccccHHHHHHHHHhc---CCCc
Q 028647           84 CVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----RVVSEKKARAWCASK---GNIP  153 (206)
Q Consensus        84 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~---~~~~  153 (206)
                      +|+|||+++.  ++.+....|+..+....     +++|+++++||+|+.....     +.+..++.+++++..   .++.
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-----~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~  150 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS  150 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-----TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence            9999999987  22333333344333322     2789999999999987533     345566666676641   2488


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHHhcCccccccC
Q 028647          154 YFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL  187 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~  187 (206)
                      |++|||++ .++.+.|..+++.++...+.-+..+
T Consensus       151 f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L  183 (331)
T 3r7w_B          151 FYLTSIFD-HSIYEAFSRIVQKLIPELSFLENML  183 (331)
T ss_dssp             EECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHH
T ss_pred             EEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999998 5899999999998876655555444

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=2.4e-26  Score=171.70  Aligned_cols=156  Identities=19%  Similarity=0.233  Sum_probs=117.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc----------chhhh
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAF   77 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~   77 (206)
                      .++|+++|.+|+|||||+|+|++........++.+.+.....+...+.  .+.+|||||+..+..          ....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            489999999999999999999988765556667677776777776664  578899999876652          12223


Q ss_pred             h--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647           78 Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        78 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      +  +.+|++++|+|+++.+.......++...          ++|+++|+||+|+.+......   ....+...++ ++++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~----------~~p~ivv~NK~Dl~~~~~~~~---~~~~l~~~lg-~~~i  146 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLLEL----------GIPCIVALNMLDIAEKQNIRI---EIDALSARLG-CPVI  146 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH----------TCCEEEEEECHHHHHHTTEEE---CHHHHHHHHT-SCEE
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHHhc----------CCCEEEEEECccchhhhhHHH---HHHHHHHhcC-CCEE
Confidence            2  6899999999999876554444444333          789999999999875422222   2455666666 8999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhc
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ++||++|.|+++++++|.+.+...
T Consensus       147 ~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          147 PLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999998876543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=3.9e-26  Score=169.99  Aligned_cols=154  Identities=19%  Similarity=0.217  Sum_probs=111.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhhc-
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR-   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   79 (206)
                      ..++|+++|.+|+|||||+++|++........++.+...  ....+.. ...+.+|||||+..+.      .....++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            358999999999999999999998764444444444333  3333443 4578999999987765      34455554 


Q ss_pred             -cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647           80 -GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        80 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                       .+|++++|+|+++.+..   ..|...+...       ++|+++|+||+|+....  ... .+...+...++ ++++++|
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~-------~~p~ilv~NK~Dl~~~~--~~~-~~~~~l~~~lg-~~vi~~S  144 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIET-------GIPVTIALNMIDVLDGQ--GKK-INVDKLSYHLG-VPVVATS  144 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHHT-------CSCEEEEEECHHHHHHT--TCC-CCHHHHHHHHT-SCEEECB
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHhc-------CCCEEEEEEChhhCCcC--CcH-HHHHHHHHHcC-CCEEEEE
Confidence             59999999999986543   3444444331       78999999999986432  111 34556666676 8999999


Q ss_pred             ccCCCCHHHHHHHHHHHHH
Q 028647          159 AKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~  177 (206)
                      |++|.|++++|++|.+.+.
T Consensus       145 A~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          145 ALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TTTTBSHHHHHHHHHHSCT
T ss_pred             ccCCCCHHHHHHHHHHHHh
Confidence            9999999999999988653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=2.9e-25  Score=165.75  Aligned_cols=157  Identities=20%  Similarity=0.225  Sum_probs=119.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc------chhhhh--c
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--R   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~   79 (206)
                      .++|+++|++|+|||||+++|++..+.....++.+.+.....+.+.+.  .+.+||+||+..+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            489999999999999999999988765556677777777777777774  588999999877665      444555  6


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCC-CcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                      ++|++++|+|+++.+.   ...+...+...       + .|+++|+||+|+.+......   ....+...++ ++++++|
T Consensus        81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~---~~~~l~~~lg-~~~~~~S  146 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NLFLTLELFEM-------EVKNIILVLNKFDLLKKKGAKI---DIKKMRKELG-VPVIPTN  146 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HHHHHHHHHHT-------TCCSEEEEEECHHHHHHHTCCC---CHHHHHHHHS-SCEEECB
T ss_pred             CCcEEEEEecCCcchh---hHHHHHHHHhc-------CCCCEEEEEEChhcCcccccHH---HHHHHHHHcC-CcEEEEE
Confidence            7999999999998642   23333333322       4 89999999999865321222   2556666776 8999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHhcC
Q 028647          159 AKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +++|.|++++++.+.+.+....
T Consensus       147 a~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          147 AKKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             GGGTBTHHHHHHHHHHHHHTCC
T ss_pred             eCCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.92  E-value=2e-24  Score=172.61  Aligned_cols=160  Identities=20%  Similarity=0.212  Sum_probs=114.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY   78 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   78 (206)
                      -+.++|+++|++++|||||+++|.+..       ......++.+.+.....+.+++  ..+.+|||||++.+...+...+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            357999999999999999999999765       2233344444444444555555  5789999999999999999999


Q ss_pred             ccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---CCC
Q 028647           79 RGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---GNI  152 (206)
Q Consensus        79 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  152 (206)
                      ..+|++++|+|+++   +.+.+.+    ..+. ..      ++|+++|+||+|+.+........+++.+++...   ...
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l----~~~~-~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~  163 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHM----LILD-HF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS  163 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHH----HHHH-HT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred             hhCCEEEEEEecCCCccHHHHHHH----HHHH-Hc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence            99999999999987   3333322    1111 11      788999999999986432334455666666544   247


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +++++||++|+|+++++++|.+.+..
T Consensus       164 ~ii~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          164 SIIPISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHhhcC
Confidence            89999999999999999999998763

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=1.3e-24  Score=164.02  Aligned_cols=164  Identities=16%  Similarity=0.122  Sum_probs=112.6

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQ   71 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~   71 (206)
                      |+.. -+..+|+++|.+|+|||||+|+|++..+.. ...+.++...........+  .++.+|||||...        +.
T Consensus         1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~   77 (301)
T 1wf3_A            1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMD   77 (301)
T ss_dssp             --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHH
T ss_pred             CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHH
Confidence            4554 445689999999999999999999987753 3344444333232333333  6789999999765        44


Q ss_pred             cchhhhhccCcEEEEEEECCChhhHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-EEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG  150 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      .....+++.+|++++|+|++++.+..  ..|+ ..+....     .+.|+++|+||+|+.+..  ....+...++   .+
T Consensus        78 ~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~---~~  145 (301)
T 1wf3_A           78 QEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-----GKVPILLVGNKLDAAKYP--EEAMKAYHEL---LP  145 (301)
T ss_dssp             HHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-----TTSCEEEEEECGGGCSSH--HHHHHHHHHT---ST
T ss_pred             HHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-----CCCCEEEEEECcccCCch--HHHHHHHHHh---cC
Confidence            55667788999999999998865433  2343 3333221     268999999999997642  1012223332   34


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          151 NIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       151 ~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ..+++++||++|.|++++++.|.+.+.+.
T Consensus       146 ~~~~~~iSA~~g~gv~~l~~~l~~~l~~~  174 (301)
T 1wf3_A          146 EAEPRMLSALDERQVAELKADLLALMPEG  174 (301)
T ss_dssp             TSEEEECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred             cCcEEEEeCCCCCCHHHHHHHHHHhcccC
Confidence            46799999999999999999999877543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.92  E-value=5.2e-24  Score=167.45  Aligned_cols=169  Identities=16%  Similarity=0.151  Sum_probs=108.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccce--eEEEEEEEe-------------C--C----eEEEE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGA--DFLTKEVQF-------------E--D----RLFTL   59 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~   59 (206)
                      .+++.++|+++|+.++|||||+++|.+..   +.....+..+.  .+....+..             .  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            45678999999999999999999998543   22333342222  332222211             1  1    13679


Q ss_pred             EEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccH
Q 028647           60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSE  139 (206)
Q Consensus        60 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  139 (206)
                      .|||+||++.|...+...+..+|++++|+|++++.........+..+ ..+.     ..|+++++||+|+.+........
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l~-----~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EILG-----IDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHTT-----CCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHcC-----CCeEEEEEEccCCCCHHHHHHHH
Confidence            99999999999888888888899999999999643111111222212 1111     34799999999998754334455


Q ss_pred             HHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          140 KKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +++.+++..+  ..++++++||++|+|+++++++|.+.+..
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            6677776653  34789999999999999999999987753

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=1.3e-24  Score=172.24  Aligned_cols=163  Identities=18%  Similarity=0.180  Sum_probs=114.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh----------hhhccch
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLG   74 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~   74 (206)
                      ...++|+++|.+|+|||||+|+|++..+. ....++++.+.....+.+++.  .+.+|||||+          +.+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35689999999999999999999987654 344556666666666777774  4789999997          3333322


Q ss_pred             -hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH----HHHHHHHhc
Q 028647           75 -VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK----KARAWCASK  149 (206)
Q Consensus        75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~~  149 (206)
                       ..+++.+|++++|+|++++.+.+.. .|+..+...       +.|+++|+||+|+.+..  ....+    ++.+.....
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~-------~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~l~~~  320 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA-------GKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFL  320 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCEEEEEEECGGGSCCC--TTHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc-------CCcEEEEEECccCCCcc--hHHHHHHHHHHHHhcccC
Confidence             2477889999999999998776664 455544321       78999999999998653  22222    222222233


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          150 GNIPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      .+++++++||++|.|++++++.+.+.+....
T Consensus       321 ~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          321 DYAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             TTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            4589999999999999999999998886543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.91  E-value=1.4e-23  Score=164.70  Aligned_cols=169  Identities=15%  Similarity=0.150  Sum_probs=118.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----------------EEEe---CCeEEEEEEEeC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK----------------EVQF---EDRLFTLQIWDT   64 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~---~~~~~~~~i~D~   64 (206)
                      ..++.++|+++|++|+|||||+++|++.......... ..+....                ....   ......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            4567799999999999999999999975432211000 0000000                0000   112367899999


Q ss_pred             CChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH
Q 028647           65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA  144 (206)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  144 (206)
                      ||++.+...+...+..+|++++|+|++++.++.....++..+... .     ..|+++|+||+|+.+........+++.+
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~-----~~~iivviNK~Dl~~~~~~~~~~~~i~~  156 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-----VKNLIIVQNKVDVVSKEEALSQYRQIKQ  156 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T-----CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-C-----CCCEEEEEECccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999876556666665544332 1     3489999999999865322233344444


Q ss_pred             HHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          145 WCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       145 ~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +....  ..++++++||++|+|+++++++|.+.+...
T Consensus       157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            44332  247899999999999999999999877543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=5.8e-24  Score=169.21  Aligned_cols=158  Identities=18%  Similarity=0.192  Sum_probs=99.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccch--------hh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~   76 (206)
                      ...++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||+..+...+        ..
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            34689999999999999999999987533 44556666667667777777  568999999986654332        34


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++++|+|++++.+++....+. .+...+.     +.|+++|+||+|+.+..  ...   .+++... +..++++
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l~-----~~piIvV~NK~Dl~~~~--~~~---~~~l~~~-~~~~~i~  376 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIR-ELKAAHP-----AAKFLTVANKLDRAANA--DAL---IRAIADG-TGTEVIG  376 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHH-HHHHHCT-----TSEEEEEEECTTSCTTT--HHH---HHHHHHH-HTSCEEE
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHH-HHHHhcC-----CCCEEEEEECcCCCCcc--chh---HHHHHhc-CCCceEE
Confidence            678899999999999987765332222 2222222     68999999999998753  221   1233333 2268999


Q ss_pred             eeccCCCCHHHHHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      +||++|.|+++++++|.+.+.
T Consensus       377 vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          377 ISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             CBTTTTBSHHHHHHHHTHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999999886

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.91  E-value=1.2e-23  Score=165.54  Aligned_cols=165  Identities=18%  Similarity=0.223  Sum_probs=114.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccce--eEEEEEEEe-------------C--C----eEEEE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGA--DFLTKEVQF-------------E--D----RLFTL   59 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~   59 (206)
                      .+++.++|+++|+.++|||||+++|++..   +.....+..+.  .+....+..             .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            34678999999999999999999998542   22333343233  232222211             0  1    13679


Q ss_pred             EEEeCCChhhhccchhhhhccCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647           60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR  135 (206)
Q Consensus        60 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (206)
                      .|||+||++.|...+...+..+|++|+|+|++++    .+.+.+.    .+. ...     ..|+++|+||+|+.+....
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~-~~~-----~~~iivviNK~Dl~~~~~~  155 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQ-IIG-----QKNIIIAQNKIELVDKEKA  155 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHH-HHT-----CCCEEEEEECGGGSCHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcC-----CCcEEEEEECccCCCHHHH
Confidence            9999999999988888888899999999999964    3333222    111 111     3479999999999864322


Q ss_pred             cccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          136 VVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       136 ~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ....+++.++....  ..++++++||++|.|+++|+++|.+.+..
T Consensus       156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            23445556665542  34789999999999999999999987754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=4.6e-23  Score=159.41  Aligned_cols=162  Identities=21%  Similarity=0.221  Sum_probs=118.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc---------cchhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~   76 (206)
                      ...++|+++|++|+|||||+++|.+........+..+.......+...+  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998764433334444444444444444  568999999964322         11223


Q ss_pred             hhccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647           77 FYRGADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ....+|++++|+|++++.  +++....|+..+.....     +.|+++|+||+|+...  .  ..++...++...+ .++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~--~--~~~~~~~~~~~~~-~~~  312 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADE--E--NIKRLEKFVKEKG-LNP  312 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCH--H--HHHHHHHHHHHTT-CCC
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCCh--H--HHHHHHHHHHhcC-CCe
Confidence            445699999999998876  67777788877766543     6899999999999764  1  1244555555554 889


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          155 FETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +++||++|+|+++++++|.+.+...
T Consensus       313 ~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          313 IKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=3.1e-25  Score=160.46  Aligned_cols=150  Identities=14%  Similarity=0.149  Sum_probs=104.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc-
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-   80 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-   80 (206)
                      ..+.++|+|+|++|+|||||+++|.+..+..   .+.++.+..+         ....+.+||+||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            4567999999999999999999999887654   2333332222         33568899999999998888888877 


Q ss_pred             ---CcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc----cHHHHHHHHHhcCCC
Q 028647           81 ---ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV----SEKKARAWCASKGNI  152 (206)
Q Consensus        81 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~  152 (206)
                         +|++++|+|++ +++++.....|+..+..........++|+++|+||+|+........    ..+++..+....+ .
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~  158 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-K  158 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-c
Confidence               89999999999 8888888888888876653210112789999999999987633221    1344555555554 6


Q ss_pred             cEEEeeccCCCC
Q 028647          153 PYFETSAKEGIN  164 (206)
Q Consensus       153 ~~~~~S~~~~~~  164 (206)
                      +++++|+++|.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            789999998765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=5.3e-24  Score=162.92  Aligned_cols=163  Identities=18%  Similarity=0.163  Sum_probs=119.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccchhhhh---ccC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAFY---RGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~   81 (206)
                      .+|+|+|.+|||||||+++|+.........+.++.......+.+++. ..+.+||+||..+    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46899999999999999999987644333344444444445555542 3688999999643    223334444   459


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEe
Q 028647           82 DCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFET  157 (206)
Q Consensus        82 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (206)
                      |++++|+|+++   +++++.+..|..++......  ..++|+++|+||+|+...      .+...++...+.. .+++++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~i  309 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPI  309 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEE
Confidence            99999999998   77888888888877654321  127899999999998753      2345556666543 579999


Q ss_pred             eccCCCCHHHHHHHHHHHHHhcC
Q 028647          158 SAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ||+++.|+++++++|.+.+.+..
T Consensus       310 SA~tg~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          310 SAVTREGLRELLFEVANQLENTP  332 (342)
T ss_dssp             SSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             ECCCCcCHHHHHHHHHHHHhhCc
Confidence            99999999999999999986544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=1.2e-23  Score=167.54  Aligned_cols=164  Identities=17%  Similarity=0.161  Sum_probs=115.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccch
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG   74 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   74 (206)
                      ...++|+++|.+|+|||||+++|.+... .....++++.+.....+..++.  .+.+|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4568999999999999999999997642 2344555555555566667774  688999999          45555443


Q ss_pred             h-hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----c
Q 028647           75 V-AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----K  149 (206)
Q Consensus        75 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~  149 (206)
                      . .+++.+|++++|+|+++..+ +....++..+..       .+.|+++|+||+|+.+.  .....++..+.+..    .
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~-------~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~  340 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE-------AGKAVVIVVNKWDAVDK--DESTMKEFEENIRDHFQFL  340 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH-------TTCEEEEEEECGGGSCC--CSSHHHHHHHHHHHHCGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH-------cCCCEEEEEEChhcCCC--chHHHHHHHHHHHHhcccC
Confidence            3 47789999999999997544 223344444432       17899999999999865  33334444444433    3


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          150 GNIPYFETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      ++++++++||++|.|++++|+.+.+.+..+..
T Consensus       341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            45899999999999999999999998765543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=1.7e-24  Score=169.68  Aligned_cols=160  Identities=23%  Similarity=0.244  Sum_probs=113.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-------hh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GV   75 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~   75 (206)
                      +....++|+|+|++|+|||||+++|++..+. ....++++.+.....+.+.+.. .+.+|||||+..+...       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            3456799999999999999999999988763 3445555666666667766653 6899999998766544       34


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .++..+|++++|+|+.....   ...|+..+...       ++|+++|+||+|+......    +...++...++ .+++
T Consensus       109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g-~~v~  173 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKEM-------EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE-AKVL  173 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT-------TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT-CCCC
T ss_pred             HHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc-------CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC-CCEE
Confidence            57888999999999943332   34455544432       7899999999999876322    45555555565 8999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhc
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ++||++|.|+++++++|.+.+.+.
T Consensus       174 ~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          174 LVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEECCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999999998654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=4e-23  Score=163.82  Aligned_cols=154  Identities=23%  Similarity=0.317  Sum_probs=105.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh---------hccchhhhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY   78 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   78 (206)
                      .+|+++|.||+|||||+|+|++.... ....++++.+.....+.+.+.  .+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987754 345566666666677777775  578999999653         234456778


Q ss_pred             ccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH-HHHHHhcCCCcEE
Q 028647           79 RGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA-RAWCASKGNIPYF  155 (206)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~  155 (206)
                      +.+|++++|+|+.++.+...  +..|+...          ++|+++|+||+|+...    . ..+. .++. .++..+++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~~p~ilv~NK~D~~~~----~-~~~~~~~~~-~lg~~~~~  143 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRKS----------TVDTILVANKAENLRE----F-EREVKPELY-SLGFGEPI  143 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TCCEEEEEESCCSHHH----H-HHHTHHHHG-GGSSCSCE
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCCEEEEEeCCCCccc----c-HHHHHHHHH-hcCCCCEE
Confidence            99999999999987654332  33333221          7899999999997531    1 1222 3443 45534789


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ++||.+|.|++++++++.+.+.+..
T Consensus       144 ~iSA~~g~gv~~L~~~i~~~l~~~~  168 (439)
T 1mky_A          144 PVSAEHNINLDTMLETIIKKLEEKG  168 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             EEeccCCCCHHHHHHHHHHhccccc
Confidence            9999999999999999999987543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.90  E-value=4.6e-23  Score=163.15  Aligned_cols=158  Identities=19%  Similarity=0.199  Sum_probs=108.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEe
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQF   52 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   52 (206)
                      ..+..++|+++|++++|||||+++|+....                               .....++.+.+.....+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            346689999999999999999999954321                               1112234444444444444


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FD---NLNNWREEFLIQASPSDPDNFP-FVVLGN  125 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~n  125 (206)
                      .+  ..+.||||||+..|...+...+..+|++|+|+|+++...   ++   .....+.... ..      ++| +++|+|
T Consensus        93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~~------~v~~iIvviN  163 (439)
T 3j2k_7           93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TA------GVKHLIVLIN  163 (439)
T ss_pred             CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-Hc------CCCeEEEEee
Confidence            44  578999999999999999999999999999999997532   11   1111111111 11      667 999999


Q ss_pred             CCCCCCCCc----ccccHHHHHHHHHhcC-----CCcEEEeeccCCCCHHHHHH
Q 028647          126 KIDVDGGNS----RVVSEKKARAWCASKG-----NIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       126 K~Dl~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~l~~  170 (206)
                      |+|+.....    .....+++..+...++     .++++++||++|.|++++++
T Consensus       164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            999964321    1223344555555443     36799999999999999665

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=2e-23  Score=166.23  Aligned_cols=154  Identities=22%  Similarity=0.291  Sum_probs=116.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh-hhcc--------chhh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~   76 (206)
                      ..++|+++|.||+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||.. .+..        ....
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            3489999999999999999999987543 45566667777677777776  468999999986 5432        2346


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++++|+|++++.+++... ++.    .+.     +.|+++|+||+|+.+.    ...+++.++.. . ..++++
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~----~l~-----~~piivV~NK~DL~~~----~~~~~~~~~~~-~-~~~~i~  383 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRK-ILE----RIK-----NKRYLVVINKVDVVEK----INEEEIKNKLG-T-DRHMVK  383 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHH-HHH----HHT-----TSSEEEEEEECSSCCC----CCHHHHHHHHT-C-STTEEE
T ss_pred             HhhcccEEEEEecCCCCCCHHHHH-HHH----Hhc-----CCCEEEEEECcccccc----cCHHHHHHHhc-C-CCcEEE
Confidence            778999999999999887765432 222    222     6799999999999753    22344444432 2 268999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHh
Q 028647          157 TSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +||++|.|+++++++|.+.+..
T Consensus       384 iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          384 ISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             EEGGGTCCHHHHHHHHHHHTHH
T ss_pred             EECCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999997653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=1.1e-22  Score=153.77  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=111.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccchh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~   75 (206)
                      .+..+|+++|++|+|||||+|+|++..+.. ...+.++.......+...+  .++.+|||||+.         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            345689999999999999999999876542 2233333322222333344  578899999976         2344456


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .+++.+|++++|+|+++ -+  ....++......      .+.|+++++||+|+...  .....+.+.++...++...++
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i  152 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE------GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIV  152 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS------SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEE
T ss_pred             HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh------cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceE
Confidence            67788999999999976 22  222333222221      16899999999998762  233445566666666644799


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhc
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ++||+++.|++++++.+.+.+...
T Consensus       153 ~iSA~~g~~v~~l~~~i~~~l~~~  176 (301)
T 1ega_A          153 PISAETGLNVDTIAAIVRKHLPEA  176 (301)
T ss_dssp             ECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             EEECCCCCCHHHHHHHHHHhCCcC
Confidence            999999999999999999877543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.90  E-value=6.9e-23  Score=166.65  Aligned_cols=161  Identities=18%  Similarity=0.260  Sum_probs=111.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC--CCC---------C--CCCccceeEE--EEEEEe---CCeEEEEEEEeCCChh
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKK--FSN---------Q--YKATIGADFL--TKEVQF---EDRLFTLQIWDTAGQE   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~--~~~---------~--~~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~~   68 (206)
                      +..+|+++|+.++|||||+++|+...  +..         .  .+...+.++.  ...+.+   ++..+.+.||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46899999999999999999998632  110         0  0111222222  222222   4556889999999999


Q ss_pred             hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh
Q 028647           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS  148 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (206)
                      .|...+...++.+|++++|+|++++.+.+....|.....   .     ++|+++|+||+|+.+..    ..+...++...
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~-----~ipiIvViNKiDl~~a~----~~~v~~ei~~~  150 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---M-----DLEVVPVLNKIDLPAAD----PERVAEEIEDI  150 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---T-----TCEEEEEEECTTSTTCC----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C-----CCCEEEeeeccCccccc----HHHHHHHHHHH
Confidence            999999999999999999999998777666666654432   1     78999999999998753    22333444444


Q ss_pred             cC--CCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          149 KG--NIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       149 ~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ++  ...++++||++|.|+++++++|.+.+...
T Consensus       151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             hCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence            44  23589999999999999999999988653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=2.5e-22  Score=163.15  Aligned_cols=164  Identities=17%  Similarity=0.262  Sum_probs=115.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CCCCccceeEEEEEEEe---CCeEEEEEEEeCCC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSN-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAG   66 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g   66 (206)
                      .++..+|+++|+.++|||||+++|+...  +..             ....+.+.......+.+   ++..+.+.||||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            3567899999999999999999997531  110             00111111111122222   45568899999999


Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC  146 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  146 (206)
                      +..|...+...++.+|++++|+|++++.+.+....|.....   .     ++|+++|+||+|+.+..    ..+...++.
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~-----~ipiIvviNKiDl~~a~----~~~v~~el~  150 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---Q-----DLVIIPVINKIDLPSAD----VDRVKKQIE  150 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---T-----TCEEEEEEECTTSTTCC----HHHHHHHHH
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---C-----CCCEEEEEeccCccccC----HHHHHHHHH
Confidence            99999888889999999999999999877777666655432   1     78999999999998653    123334454


Q ss_pred             HhcCC--CcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          147 ASKGN--IPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       147 ~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ..++.  ..++++||++|.|+++++++|.+.++...
T Consensus       151 ~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          151 EVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            44441  25899999999999999999999886543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.89  E-value=3.7e-25  Score=177.57  Aligned_cols=164  Identities=19%  Similarity=0.204  Sum_probs=117.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      ++++|+++|++++|||||+++|.+..+.....++.+.++....+...+. ..+.||||||++.|...+...+..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            4578999999999999999999977655555555555544444434222 367899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH---HHhc-CCCcEEEeeccCC
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW---CASK-GNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~S~~~~  162 (206)
                      |+|++++...+....+ ..+.   ..    ++|+++++||+|+.+...... .++...+   ...+ +..+++++||++|
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~---~~----~vPiIVViNKiDl~~~~~~~v-~~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAK---DA----HVPIVLAINKCDKAEADPEKV-KKELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHH---TT----TCCEEECCBSGGGTTTSCCSS-SSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             EEECCCCccHHHHHHH-HHHH---Hc----CCcEEEEEecccccccchHHH-HHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            9999986654444332 2221   11    789999999999976432222 2222221   1112 1357999999999


Q ss_pred             CCHHHHHHHHHHHHHhcC
Q 028647          163 INVEEAFQCIAKNALKSG  180 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~  180 (206)
                      .|+++++++|...+....
T Consensus       153 ~GI~eLle~I~~l~~~~~  170 (537)
T 3izy_P          153 ENMMALAEATIALAEMLE  170 (537)
T ss_dssp             CSSHHHHHHHHHHHTTCC
T ss_pred             CCchhHHHHHHHhhhccc
Confidence            999999999998875433

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=1.8e-23  Score=165.71  Aligned_cols=154  Identities=16%  Similarity=0.244  Sum_probs=100.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChh--------hhccchhhhhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFYR   79 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~   79 (206)
                      .+|+++|.+|+|||||+|+|++..+.. ...++.+.+.......+.+  ..+.+|||||+.        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            689999999999999999999876542 2333444344344444444  468999999975        55666778889


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      .+|++++|+|+.++.+...  .++..++..      .++|+++|+||+|+.....  .    ..++. .++...++++||
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~------~~~pvilv~NK~D~~~~~~--~----~~~~~-~lg~~~~~~iSA  146 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILYR------TKKPVVLAVNKLDNTEMRA--N----IYDFY-SLGFGEPYPISG  146 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHTT------CCSCEEEEEECCCC-------C----CCSSG-GGSSCCCEECBT
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHHH------cCCCEEEEEECccCccchh--h----HHHHH-HcCCCCeEEEeC
Confidence            9999999999998765443  233333321      1789999999999875421  1    11122 234347899999


Q ss_pred             cCCCCHHHHHHHHHHHHHhc
Q 028647          160 KEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~~  179 (206)
                      .+|.|++++++++.+.+.+.
T Consensus       147 ~~g~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          147 THGLGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             TTTBTHHHHHHHHHHTGGGC
T ss_pred             cCCCChHHHHHHHHHhcCcc
Confidence            99999999999999988653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=8.2e-22  Score=152.17  Aligned_cols=165  Identities=19%  Similarity=0.102  Sum_probs=108.3

Q ss_pred             eEE-EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccchhhh
Q 028647            8 LLK-VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAF   77 (206)
Q Consensus         8 ~~~-i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   77 (206)
                      .++ |+++|++|+|||||+|+|++..+.....+..+.+.....+.+++  ..+.+|||+|.-         .+.. ....
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~-tl~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFV-TLSE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHH-HHHG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHH-HHHH
Confidence            345 99999999999999999998876544455556666677777877  457899999952         1222 2335


Q ss_pred             hccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc--CCCc
Q 028647           78 YRGADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIP  153 (206)
Q Consensus        78 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~  153 (206)
                      +..+|++++|+|++++.  ..+....+...+....    ..+.|+++|+||+|+.... .....+.+..+...+  +..+
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~----~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~  329 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIG----VSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFD  329 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT----CCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC----cCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCc
Confidence            68899999999999876  4444444443333221    1268999999999987642 111122333333444  2246


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          154 YFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       154 ~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ++++|++++.|+++++++|.+.+....
T Consensus       330 ~~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          330 VIPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHHHhcccC
Confidence            899999999999999999998776543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=4.7e-22  Score=147.56  Aligned_cols=168  Identities=18%  Similarity=0.232  Sum_probs=107.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCc-cceeEEEEEEEeCCeEEEEEEEeCCChhhhccc---------
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---------   73 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------   73 (206)
                      ....++|+|+|++|+|||||+++|++... .....++ .+...........+  ..+.||||||+..+...         
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            34579999999999999999999998763 3333443 44444455555666  46899999997654322         


Q ss_pred             --hhhhhccCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEe-CCCCCCCCcccc----cHHHHHHH
Q 028647           74 --GVAFYRGADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGN-KIDVDGGNSRVV----SEKKARAW  145 (206)
Q Consensus        74 --~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~----~~~~~~~~  145 (206)
                        ....++.+|++++|+|+++.... ..+..++..+.....     ..|+++|+| |+|+........    ..++++.+
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-----~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-----MGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-----GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-----hccEEEEEEcccccCCccHHHHHHhcchHHHHHH
Confidence              22356789999999999863221 223334433322110     346666666 999975311000    00334445


Q ss_pred             HHhcCCCc--E--EEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          146 CASKGNIP--Y--FETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       146 ~~~~~~~~--~--~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ....+...  +  +++||+++.|++++|+.|.+.+...
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            55554211  2  7899999999999999999988764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.88  E-value=5.1e-23  Score=153.82  Aligned_cols=165  Identities=15%  Similarity=0.182  Sum_probs=94.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-------CCccceeEEEEEEEeCCeEEEEEEEeCCChhh------
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QY-------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER------   69 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------   69 (206)
                      ++...++|+|+|.+|+|||||+|+|+...... .+       .++.+.+.....+..++..+.+.+|||||...      
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence            45567999999999999999999987665443 22       45555555555555566667899999999622      


Q ss_pred             -hccch-------hhhhc-------------cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           70 -FQSLG-------VAFYR-------------GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        70 -~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                       +....       ..++.             .+|+++++++.+.......-..++..+    ..    ++|+++|+||+|
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l----~~----~~pvi~V~nK~D  155 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL----HE----KVNIIPLIAKAD  155 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH----TT----TSCEEEEESSGG
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH----hc----cCCEEEEEeccC
Confidence             22221       22222             378999999776522112222333333    22    679999999999


Q ss_pred             CCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      +..........+.+.+.....+ ++++.+|+.+++|+++++++|.+.++
T Consensus       156 ~~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          156 TLTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            8754333333344555555555 88999999999999999999987653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=8.1e-23  Score=162.06  Aligned_cols=156  Identities=21%  Similarity=0.206  Sum_probs=106.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   76 (206)
                      ...++|+++|++|+|||||+|+|++..+. ....++++.+.....+.+++  ..+.+|||||...+...        ...
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence            34689999999999999999999986543 34455666666556666777  46789999997554433        233


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .+..+|++++|+|++++.+... ..++..+    .     ..|+++|+||+|+.+.....    ....+   ....++++
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~~~~~----~~~~~---~~~~~~i~  362 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEKQLIT----SLEYP---ENITQIVH  362 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCGGGST----TCCCC---TTCCCEEE
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcchhhH----HHHHh---ccCCcEEE
Confidence            5788999999999998766443 3344333    2     46999999999997652211    11111   13468999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhcC
Q 028647          157 TSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +|+++|.|+++++++|.+.+....
T Consensus       363 iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          363 TAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             EECCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999886543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.88  E-value=2.1e-22  Score=161.33  Aligned_cols=155  Identities=17%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEeCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (206)
                      +..++|+++|++++|||||+++|+....                               .....++.+.+.....+..  
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence            5679999999999999999999975411                               0111122333333333333  


Q ss_pred             eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHH-----HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-----LNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      ....+.||||||+..+...+...+..+|++|+|+|++++.+...     .......+.....     ..|+++|+||+|+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~iIvviNK~Dl  183 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIAMNKMDN  183 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCCEEEEEECGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCcEEEEEECcCc
Confidence            34678999999999999999999999999999999998643221     1111111221211     2469999999999


Q ss_pred             CCCCc--ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647          130 DGGNS--RVVSEKKARAWCASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       130 ~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      .+...  .....+++..+...++    .++++++||++|+|+++
T Consensus       184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            86421  1122333444444333    36899999999999874

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.88  E-value=7.7e-23  Score=160.20  Aligned_cols=164  Identities=17%  Similarity=0.137  Sum_probs=112.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKK-------FSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (206)
                      +.++|+++|++++|||||+++|++..       +..       ..+...+.+.......+......+.||||||+..|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998631       110       0001122233233333433345789999999999988


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHHHhcC
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWCASKG  150 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~  150 (206)
                      .+...+..+|++|+|+|+++....+....+ ..+.. .      ++| +++++||+|+.+.... ....+++.+++..++
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  153 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-I------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG  153 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-T------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-c------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence            888889999999999999986543333222 22221 1      678 6899999999752111 223456666776665


Q ss_pred             ----CCcEEEeeccCCCC----------HHHHHHHHHHHHHh
Q 028647          151 ----NIPYFETSAKEGIN----------VEEAFQCIAKNALK  178 (206)
Q Consensus       151 ----~~~~~~~S~~~~~~----------i~~l~~~l~~~~~~  178 (206)
                          .++++++||++|.|          ++++++.|.+.+..
T Consensus       154 ~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          154 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence                36899999999764          88899988887653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=9.9e-22  Score=155.83  Aligned_cols=162  Identities=23%  Similarity=0.188  Sum_probs=107.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-----------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------   73 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   73 (206)
                      ...++|+++|++|||||||+|+|++.... ....++++.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            34689999999999999999999987542 334455555565666777775  5789999996432211           


Q ss_pred             -hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH-HHH---Hh
Q 028647           74 -GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR-AWC---AS  148 (206)
Q Consensus        74 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~---~~  148 (206)
                       ....++.+|++++++|+.++.+.... .+...+. .      .+.|+++|+||+|+.+..  ....++.. .+.   ..
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-~------~~~~~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~  325 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-R------RGRASVVVFNKWDLVVHR--EKRYDEFTKLFREKLYF  325 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-H------TTCEEEEEEECGGGSTTG--GGCHHHHHHHHHHHCGG
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H------cCCCEEEEEECccCCCch--hhHHHHHHHHHHHHhcc
Confidence             13456789999999999876554432 2222221 1      178999999999997642  22222222 222   23


Q ss_pred             cCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          149 KGNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       149 ~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ....+++++||++|.|++++++.+.+.+...
T Consensus       326 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          326 IDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             GTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            3457899999999999999999999877654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=6.3e-23  Score=161.16  Aligned_cols=166  Identities=17%  Similarity=0.144  Sum_probs=113.1

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC--------CCCCC-------CCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK--------KFSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (206)
                      ..+..++|+++|++++|||||+++|++.        .+...       .+...+.++......+......+.+|||||+.
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            3456799999999999999999999873        11100       00112222222333343333578999999999


Q ss_pred             hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHH
Q 028647           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~  146 (206)
                      .|...+...+..+|++|+|+|++++...+ ...++..+...       ++| +++++||+|+.+.... ....+++.++.
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l  158 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  158 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence            99888888999999999999998865433 33444333221       678 8999999999753111 12334566666


Q ss_pred             HhcC----CCcEEEeeccCCCC------------------HHHHHHHHHHHHH
Q 028647          147 ASKG----NIPYFETSAKEGIN------------------VEEAFQCIAKNAL  177 (206)
Q Consensus       147 ~~~~----~~~~~~~S~~~~~~------------------i~~l~~~l~~~~~  177 (206)
                      ..++    ..+++++||++|.|                  +++|++.|.+.+.
T Consensus       159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            6655    37899999999987                  7777777777664

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=6.5e-21  Score=139.72  Aligned_cols=167  Identities=15%  Similarity=0.182  Sum_probs=107.2

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEEEeCCeEEEEEEEeCCCh-----------hhhc
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQ-----------ERFQ   71 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~   71 (206)
                      ....++|+|+|++|+|||||+++|++..+.....+  +.+.........+.+  ..+.+|||||.           ..+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            35679999999999999999999999887655544  445555555666666  46789999993           2344


Q ss_pred             cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc----ccHHHHHHHHH
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV----VSEKKARAWCA  147 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~  147 (206)
                      ......++.+|++++|+|+++....+  ..++..+...+...  ...|+++|+||+|+.......    ...+.++.+..
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            44455567789999999987643311  22222222211100  045999999999987643221    11245777777


Q ss_pred             hcCCCcEEEeeccCC-----CCHHHHHHHHHHHHHh
Q 028647          148 SKGNIPYFETSAKEG-----INVEEAFQCIAKNALK  178 (206)
Q Consensus       148 ~~~~~~~~~~S~~~~-----~~i~~l~~~l~~~~~~  178 (206)
                      .++ ..++.++...+     .++.++++.+.+.+.+
T Consensus       180 ~~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            777 67888877644     6899999988887754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.9e-22  Score=143.02  Aligned_cols=119  Identities=15%  Similarity=0.194  Sum_probs=88.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc--
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG--   80 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--   80 (206)
                      .+.++|+|+|++|||||||+++|.+..+..   ...++.+.++         ....+.+||+||+..+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            456899999999999999999999887543   2222222111         23568899999998888777777766  


Q ss_pred             --CcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           81 --ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        81 --~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                        +|++++|+|++ +++++.....|+..+..........+.|+++|+||+|+.+..
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence              89999999999 899999888888777654321011278999999999998754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=1.2e-23  Score=166.55  Aligned_cols=163  Identities=14%  Similarity=0.208  Sum_probs=105.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------CCCccceeEEEEEEEeC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ-----------------------------YKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~   53 (206)
                      .++.++|+++|++++|||||+++|+..  .+...                             ..++.+.+.....+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            356799999999999999999999864  22111                             01223333333333333


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKIDVDGG  132 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~  132 (206)
                      +  ..+.+|||||+..|...+...+..+|++|+|+|+++ .+++....|..+...+.......++ |+++++||+|+.+.
T Consensus        83 ~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           83 K--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             S--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             C--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            3  578999999999999999999999999999999998 5566433221111111100000044 68999999999863


Q ss_pred             Cc----ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHHHHH
Q 028647          133 NS----RVVSEKKARAWCASKG----NIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       133 ~~----~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~l~~  170 (206)
                      ..    .....+++.+++..++    .++++++||++|+|+.++++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            21    1234566677776655    26799999999999985543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.87  E-value=6.4e-22  Score=159.32  Aligned_cols=117  Identities=16%  Similarity=0.222  Sum_probs=83.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------C----CCCCccceeEEEEEEEeCCeEEEEEEEe
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS------------------N----QYKATIGADFLTKEVQFEDRLFTLQIWD   63 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (206)
                      .+..+|+|+|++|+|||||+++|+.....                  .    ...++.+.......+.+.+  ..+.|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            45789999999999999999999621100                  0    0011222222333444444  6789999


Q ss_pred             CCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |||+..+...+...++.+|++|+|+|++++.+.....-|. .+...       ++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~-------~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR-------HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT-------TCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc-------CCCEEEEEeCCCCccc
Confidence            9999999999999999999999999999876655554442 22211       7899999999999764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=2.5e-22  Score=159.94  Aligned_cols=156  Identities=17%  Similarity=0.186  Sum_probs=101.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC--------hhhhccchhhhhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSLGVAFYR   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~   79 (206)
                      ..+|+++|.+|||||||+|+|.+..+.. ...+.+.+..............+.+|||||        +..+......+++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            5789999999999999999999876541 122223333333333443345789999999        6777778888899


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      .+|++|+|+|..+..+..  ..++..++..      .++|+++|+||+|+....      +...++. .++....+++||
T Consensus       102 ~ad~il~VvD~~~~~~~~--d~~l~~~l~~------~~~pvilV~NK~D~~~~~------~~~~e~~-~lg~~~~~~iSA  166 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTAA--DEEVAKILYR------TKKPVVLAVNKLDNTEMR------ANIYDFY-SLGFGEPYPISG  166 (456)
T ss_dssp             HCSEEEEEEESSSCSCHH--HHHHHHHHTT------CCSCEEEEEECC---------------CCSG-GGSSSSEEECCT
T ss_pred             hCCEEEEEEeCCCCCChH--HHHHHHHHHH------cCCCEEEEEECccchhhh------hhHHHHH-HcCCCceEEeec
Confidence            999999999988644322  2333333322      178999999999986431      1111111 233346789999


Q ss_pred             cCCCCHHHHHHHHHHHHHhc
Q 028647          160 KEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~~  179 (206)
                      .+|.|+.++++.+.+.+...
T Consensus       167 ~~g~gv~~L~~~i~~~l~~~  186 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKNI  186 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGGS
T ss_pred             ccccchHHHHHHHHhhcccc
Confidence            99999999999999877543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.86  E-value=1.1e-21  Score=151.91  Aligned_cols=150  Identities=15%  Similarity=0.034  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      +|+++|++++|||||+++|+        ....+.+.....+...+  ..+.+|||||+..|.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        22222233333333444  468999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEe-CCCCCCCCcccccHHHHHHHHHhcC--CCcEEE--eeccC--
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGN-KIDVDGGNSRVVSEKKARAWCASKG--NIPYFE--TSAKE--  161 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~S~~~--  161 (206)
                       +.. .......++..+...       ++|. ++++| |+|+ +........++++++....+  .+++++  +||++  
T Consensus        93 -~~g-~~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~  162 (370)
T 2elf_A           93 -PQG-LDAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN  162 (370)
T ss_dssp             -TTC-CCHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred             -CCC-CcHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence             543 233334444333221       6677 99999 9999 43111222355666655443  478999  99999  


Q ss_pred             -CCCHHHHHHHHHHHHHhc
Q 028647          162 -GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       162 -~~~i~~l~~~l~~~~~~~  179 (206)
                       +.|++++++.|.+.+...
T Consensus       163 ~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          163 PFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             TTTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhhcccc
Confidence             999999999999887653

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.86  E-value=5.7e-24  Score=169.41  Aligned_cols=157  Identities=23%  Similarity=0.277  Sum_probs=107.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .++.+|+++|++++|||||+++|....+.....++.+.+.....+.+++  ..+.||||||++.|...+...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3568999999999999999999987654433333333333223333344  35789999999999999888899999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH--HHHHHHHhcC-CCcEEEeec
Q 028647           86 LVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK--KARAWCASKG-NIPYFETSA  159 (206)
Q Consensus        86 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~S~  159 (206)
                      +|+|++++   .+.+.+    .....  .     ++|+++++||+|+.+........+  +...+...++ .++++++||
T Consensus        80 LVVda~~g~~~qT~e~l----~~~~~--~-----~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSA  148 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI----QHAKA--A-----QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA  148 (501)
T ss_dssp             EEEETTTBSCTTTHHHH----HHHHH--T-----TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCT
T ss_pred             EEeecccCccHHHHHHH----HHHHh--c-----CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEee
Confidence            99999873   333322    11111  1     789999999999976422111000  0000111121 368999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKN  175 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~  175 (206)
                      ++|.|+++++++|...
T Consensus       149 ktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          149 KAGTGIDELLDAILLQ  164 (501)
T ss_dssp             TTCTTCTTHHHHTTTT
T ss_pred             eeccCcchhhhhhhhh
Confidence            9999999999998754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.86  E-value=4.8e-22  Score=158.14  Aligned_cols=156  Identities=17%  Similarity=0.236  Sum_probs=105.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----------------------------CCCccceeEEEEEEEe
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----------------------------YKATIGADFLTKEVQF   52 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~   52 (206)
                      +....++|+++|++++|||||+++|+...  +...                             ...+.+.+.....+..
T Consensus         3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~   82 (458)
T 1f60_A            3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET   82 (458)
T ss_dssp             CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence            45678999999999999999999998641  1100                             0122233332333333


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FD---NLNNWREEFLIQASPSDPDNFP-FVVLGN  125 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~n  125 (206)
                      .+  ..+.||||||+..|...+...+..+|++|+|+|++++..   |+   .....+... .. .     ++| +++|+|
T Consensus        83 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~-~-----~v~~iivviN  153 (458)
T 1f60_A           83 PK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT-L-----GVRQLIVAVN  153 (458)
T ss_dssp             SS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH-T-----TCCEEEEEEE
T ss_pred             CC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH-c-----CCCeEEEEEE
Confidence            33  578999999999999999999999999999999997532   11   111222111 11 1     565 999999


Q ss_pred             CCCCCCCCc--ccccHHHHHHHHHhcCC----CcEEEeeccCCCCHHHH
Q 028647          126 KIDVDGGNS--RVVSEKKARAWCASKGN----IPYFETSAKEGINVEEA  168 (206)
Q Consensus       126 K~Dl~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~S~~~~~~i~~l  168 (206)
                      |+|+.+...  .....+++.+++..++.    ++++++||++|.|+.++
T Consensus       154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            999984211  12344556666666652    78999999999998754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.86  E-value=3.8e-21  Score=147.61  Aligned_cols=128  Identities=15%  Similarity=0.213  Sum_probs=99.9

Q ss_pred             EEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCC
Q 028647           48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN  117 (206)
Q Consensus        48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~  117 (206)
                      ..+.+++  +.+++||++|++.+...|..++++++++|+|+|+++          ..+++....|+..+.....   ..+
T Consensus       186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~---~~~  260 (353)
T 1cip_A          186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW---FTD  260 (353)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG---GTT
T ss_pred             EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc---ccC
Confidence            3444554  779999999999999999999999999999999998          4568888788777765321   227


Q ss_pred             CcEEEEEeCCCCCCCC-------------cccccHHHHHHHHHh----------cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647          118 FPFVVLGNKIDVDGGN-------------SRVVSEKKARAWCAS----------KGNIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       118 ~p~ivv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                      +|+++++||+|+.+..             ......+++..++..          ...+.+++|||+++.|++++|+++.+
T Consensus       261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence            8999999999985321             002456777777652          23478999999999999999999999


Q ss_pred             HHHhcC
Q 028647          175 NALKSG  180 (206)
Q Consensus       175 ~~~~~~  180 (206)
                      .+++..
T Consensus       341 ~i~~~~  346 (353)
T 1cip_A          341 VIIKNN  346 (353)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            987654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=4e-21  Score=152.08  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=103.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CC----------CCC---------------------ccceeEEEEEEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS--NQ----------YKA---------------------TIGADFLTKEVQ   51 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~--~~----------~~~---------------------~~~~~~~~~~~~   51 (206)
                      .+..++|+++|++++|||||+++|+.....  ..          ...                     +.+.+.....+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            356799999999999999999999865311  00          001                     111111122222


Q ss_pred             eCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCC
Q 028647           52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKIDVD  130 (206)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~  130 (206)
                      ..+  ..+.+|||||++.|...+...+..+|++|+|+|++++...+ ...++..+. ..      +. |+++|+||+|+.
T Consensus       101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~-~~------~~~~iIvviNK~Dl~  170 (434)
T 1zun_B          101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIAS-LL------GIKHIVVAINKMDLN  170 (434)
T ss_dssp             CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHH-HT------TCCEEEEEEECTTTT
T ss_pred             cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHH-Hc------CCCeEEEEEEcCcCC
Confidence            333  57899999999999888888999999999999999864322 223332222 11      44 699999999998


Q ss_pred             CCCcc--cccHHHHHHHHHhcC----CCcEEEeeccCCCCHHHH
Q 028647          131 GGNSR--VVSEKKARAWCASKG----NIPYFETSAKEGINVEEA  168 (206)
Q Consensus       131 ~~~~~--~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~l  168 (206)
                      +....  ....++..+++..++    .++++++||++|.|++++
T Consensus       171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            63211  123455666666654    268999999999999884

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=9.8e-22  Score=160.84  Aligned_cols=154  Identities=18%  Similarity=0.192  Sum_probs=103.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCccceeEEEEEEEeCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-------------------------------KATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   54 (206)
                      +..++|+++|++|+|||||+++|+........                               .++.+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            55799999999999999999999865322111                               12333333333444444


Q ss_pred             eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCC
Q 028647           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---F---DNLNNWREEFLIQASPSDPDNF-PFVVLGNKI  127 (206)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~  127 (206)
                        ..+.||||||+..+...+...+..+|++|+|+|++++..   +   ......+. +....      ++ |+++|+||+
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~-~~~~l------gi~~iIVVvNKi  315 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL------GIHNLIIAMNKM  315 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHH-HHHTT------TCCEEEEEEECT
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHH-HHHHc------CCCeEEEEEecc
Confidence              578999999999999999999999999999999987421   0   01111111 11111      43 599999999


Q ss_pred             CCCCCCc--ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHHH
Q 028647          128 DVDGGNS--RVVSEKKARAWCASKG----NIPYFETSAKEGINVEEA  168 (206)
Q Consensus       128 Dl~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~l  168 (206)
                      |+.+...  .....+++..+....+    .++++++||++|.|+.++
T Consensus       316 Dl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             cccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            9986321  1122344444554443    368999999999999876

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=5.5e-22  Score=153.31  Aligned_cols=172  Identities=16%  Similarity=0.214  Sum_probs=93.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--------CCccceeEEEEEEEeCCeEEEEEEEeCCCh-------hh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   69 (206)
                      ...++|+|+|++|+|||||+++|+..... ..+        .++.+.......+...+..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            45689999999999999999998764332 221        133333333333444566678999999997       55


Q ss_pred             hccchh-------hhhccC-------------cEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           70 FQSLGV-------AFYRGA-------------DCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        70 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                      +.....       .+++.+             |+++++++.. ..++.... .++..    +.    .++|+|+|+||+|
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~----l~----~~~piIlV~NK~D  185 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKA----IH----NKVNIVPVIAKAD  185 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHH----TC----S-SCEEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHH----hc----cCCCEEEEEECCC
Confidence            555554       444433             4566666542 22333332 23222    22    2789999999999


Q ss_pred             CCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCC
Q 028647          129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP  188 (206)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~  188 (206)
                      +..........+++.+++...+ ++++++|++++.+ ++.|..+.+.+....|.......
T Consensus       186 l~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~vv~s~  243 (361)
T 2qag_A          186 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIPFSVVGSN  243 (361)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCSCEECCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCEeCCC
Confidence            9864222222256666666665 8999999999999 88999999988877765544433

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.85  E-value=3.4e-21  Score=138.37  Aligned_cols=160  Identities=19%  Similarity=0.160  Sum_probs=101.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----------hccchh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~   75 (206)
                      ....+|+++|++|||||||+++|.+..+.....++.+.......+.+++   .+.+||+||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4467999999999999999999998764333344444443333333333   467899999632          222222


Q ss_pred             hhh---ccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647           76 AFY---RGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG  150 (206)
Q Consensus        76 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      .++   ..++++++++|++++.+...  +..|+...          +.|+++|.||+|+.....++...+.+..++...+
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~  170 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS----------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFN  170 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc----------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence            333   46899999999988655332  22232211          7899999999998764323333455666665554


Q ss_pred             -CCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          151 -NIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       151 -~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                       ...++++|+.++.|+++++++|.+.+.+
T Consensus       171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          171 GDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             SCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence             3568899999999999999999887643

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=4.1e-21  Score=156.39  Aligned_cols=163  Identities=25%  Similarity=0.270  Sum_probs=106.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEE------------EeCCeEEEEEEEeCCChhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK----ATIGADFLTKEV------------QFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~   69 (206)
                      .+.++|+++|++++|||||+++|.+..+.....    ++.+..+.....            .++.....+.||||||+..
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            346899999999999999999998765432211    122222211000            0000112489999999999


Q ss_pred             hccchhhhhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc-----------
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-----------  135 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----------  135 (206)
                      |.......++.+|++|+|+|+++   +.+++.+..    +..       .++|+++++||+|+.+....           
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa  151 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS  151 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCCchHHHHH
Confidence            99888888899999999999998   555444322    111       17899999999999753110           


Q ss_pred             ---ccc----HH---HHHHHHHhc--------------CCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          136 ---VVS----EK---KARAWCASK--------------GNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       136 ---~~~----~~---~~~~~~~~~--------------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                         ...    .+   +........              ..++++++||++|.|+++++++|...+...
T Consensus       152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence               000    01   111111111              224899999999999999999999887643

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=5.8e-21  Score=144.65  Aligned_cols=131  Identities=12%  Similarity=0.129  Sum_probs=99.2

Q ss_pred             EEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCC
Q 028647           46 LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDP  115 (206)
Q Consensus        46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~  115 (206)
                      ....+.+.+  +.+++||++|++.++..|.+++++++++|+|+|++          +..+++....|+..+....   ..
T Consensus       158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~---~~  232 (327)
T 3ohm_A          158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP---WF  232 (327)
T ss_dssp             EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG---GG
T ss_pred             EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh---cc
Confidence            334444554  78999999999999999999999999999999665          5667777777777665432   22


Q ss_pred             CCCcEEEEEeCCCCCCCC--------------cccccHHHHHHHHH---------hcCCCcEEEeeccCCCCHHHHHHHH
Q 028647          116 DNFPFVVLGNKIDVDGGN--------------SRVVSEKKARAWCA---------SKGNIPYFETSAKEGINVEEAFQCI  172 (206)
Q Consensus       116 ~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~---------~~~~~~~~~~S~~~~~~i~~l~~~l  172 (206)
                      .++|+++++||+|+.+..              ......+++.+++.         ....+.++++||+++.|++.+|+.+
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v  312 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV  312 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence            378999999999986421              01346667776642         1123678999999999999999999


Q ss_pred             HHHHHhcCc
Q 028647          173 AKNALKSGE  181 (206)
Q Consensus       173 ~~~~~~~~~  181 (206)
                      .+.+++..-
T Consensus       313 ~~~Il~~~l  321 (327)
T 3ohm_A          313 KDTILQLNL  321 (327)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhH
Confidence            999987653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.85  E-value=2.2e-21  Score=165.15  Aligned_cols=166  Identities=16%  Similarity=0.114  Sum_probs=111.5

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC-------CC-----C--CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-------FS-----N--QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~-------~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (206)
                      ...+.++|+++|++++|||||+++|++..       +.     +  ..+...+.++....+.++.....+.||||||+..
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            34567999999999999999999998631       00     0  1112223333222333444446789999999999


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHHH
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWCA  147 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~  147 (206)
                      |...+...+..+|++|+|+|++++...+. ..++..+...       ++| +++++||+|+.+.... ....+++.++..
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk  443 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS  443 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence            99888889999999999999998643222 2333333221       678 7899999999863111 123456666776


Q ss_pred             hcC----CCcEEEeeccCC--------CCHHHHHHHHHHHHH
Q 028647          148 SKG----NIPYFETSAKEG--------INVEEAFQCIAKNAL  177 (206)
Q Consensus       148 ~~~----~~~~~~~S~~~~--------~~i~~l~~~l~~~~~  177 (206)
                      .++    .++++++||++|        .|++++++.|.+.+.
T Consensus       444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            654    378999999999        468888888887664

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.85  E-value=5e-22  Score=158.39  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=91.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCccceeEEEEEEEeCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSN-----------------------------QYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (206)
                      +..++|+++|++++|||||+++|+..  .+..                             ......+.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            56799999999999999999999742  1110                             0012222233223344444


Q ss_pred             eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCC
Q 028647           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVD  130 (206)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  130 (206)
                        ..+.||||||+..|...+...+..+|++|+|+|++++.   +|+...++...+......    ++| +++++||+|+.
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~----~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ----GINHLVVVINKMDEP  194 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT----TCSSEEEEEECTTST
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc----CCCEEEEEEECccCC
Confidence              57899999999999999999999999999999999863   222111222221111111    677 99999999996


Q ss_pred             CCCc----ccccHHHHHHHHHhc-C-----CCcEEEeeccCCCCHHHHH
Q 028647          131 GGNS----RVVSEKKARAWCASK-G-----NIPYFETSAKEGINVEEAF  169 (206)
Q Consensus       131 ~~~~----~~~~~~~~~~~~~~~-~-----~~~~~~~S~~~~~~i~~l~  169 (206)
                      +...    .....+++..++... +     .++++++||++|.|+.+++
T Consensus       195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            5321    122344566666554 3     3679999999999998765

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=8.5e-21  Score=145.64  Aligned_cols=122  Identities=12%  Similarity=0.174  Sum_probs=92.7

Q ss_pred             eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 028647           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG  124 (206)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  124 (206)
                      ..+.+++||++|++.+...+..++++++++|+|+|++          +..+++....|+..+.....   ..++|+++|+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~---~~~~piiLvg  257 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC---FEKTSFMLFL  257 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG---GSSCEEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc---cCCCeEEEEE
Confidence            5688999999999999999999999999999999998          77888888888887765321   1278999999


Q ss_pred             eCCCCCCCCc-------------------ccccHHHHHHHHHh---------------cCCCcEEEeeccCCCCHHHHHH
Q 028647          125 NKIDVDGGNS-------------------RVVSEKKARAWCAS---------------KGNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       125 nK~Dl~~~~~-------------------~~~~~~~~~~~~~~---------------~~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      ||+|+.+...                   .....+++.+++..               ...+.+++|||+++.|++++|+
T Consensus       258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~  337 (354)
T 2xtz_A          258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK  337 (354)
T ss_dssp             ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence            9999853210                   00124556665332               1124468999999999999999


Q ss_pred             HHHHHHHhc
Q 028647          171 CIAKNALKS  179 (206)
Q Consensus       171 ~l~~~~~~~  179 (206)
                      ++.+.+++.
T Consensus       338 ~v~~~I~~~  346 (354)
T 2xtz_A          338 LVDETLRRR  346 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.84  E-value=3.7e-22  Score=162.94  Aligned_cols=163  Identities=17%  Similarity=0.203  Sum_probs=89.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEeC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (206)
                      .+..++|+++|++++|||||+++|+....                               .....++++.+.....+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            45679999999999999999999964210                               01112233333333333333


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SF---DNLNNWREEFLIQASPSDPDNFP-FVVLGNK  126 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK  126 (206)
                        ...+.||||||+..|...+...+..+|++|+|+|++++.   .+   ......+..+ ...      ++| +|+|+||
T Consensus       254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~l------gip~iIvviNK  324 (592)
T 3mca_A          254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RAL------GISEIVVSVNK  324 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HHS------SCCCEEEEEEC
T ss_pred             --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HHc------CCCeEEEEEec
Confidence              367899999999999999999999999999999998532   01   0111111111 111      566 9999999


Q ss_pred             CCCCCCCc--ccccHHHHHHHH-HhcC----CCcEEEeeccCCCCHH--------------HHHHHHHHHH
Q 028647          127 IDVDGGNS--RVVSEKKARAWC-ASKG----NIPYFETSAKEGINVE--------------EAFQCIAKNA  176 (206)
Q Consensus       127 ~Dl~~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~S~~~~~~i~--------------~l~~~l~~~~  176 (206)
                      +|+.+...  .....+++..+. ...+    .++++++||++|.|+.              .|++.|.+..
T Consensus       325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            99976321  112234444444 3333    2479999999999998              6777766543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.83  E-value=3.3e-20  Score=142.90  Aligned_cols=127  Identities=11%  Similarity=0.139  Sum_probs=91.3

Q ss_pred             EEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCC
Q 028647           49 EVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNF  118 (206)
Q Consensus        49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~  118 (206)
                      .+.+++  +.+++||++|+..+...|..++++++++|+|+|+++          ..+++....|+..+.....   ..++
T Consensus       195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~---~~~~  269 (362)
T 1zcb_A          195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV---FSNV  269 (362)
T ss_dssp             EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG---GTTS
T ss_pred             EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh---hCCC
Confidence            344444  678999999999999999999999999999999998          6788888888877765321   1278


Q ss_pred             cEEEEEeCCCCCCCC--------------cccccHHHHHHHHH-------h---cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647          119 PFVVLGNKIDVDGGN--------------SRVVSEKKARAWCA-------S---KGNIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       119 p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-------~---~~~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                      |+|+++||+|+.+..              ......+++..++.       .   ...+.+++|||+++.|++++|+++.+
T Consensus       270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence            999999999986321              01145666666651       1   12377899999999999999999999


Q ss_pred             HHHhcC
Q 028647          175 NALKSG  180 (206)
Q Consensus       175 ~~~~~~  180 (206)
                      .+++..
T Consensus       350 ~i~~~~  355 (362)
T 1zcb_A          350 TILHDN  355 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=1e-20  Score=143.00  Aligned_cols=161  Identities=16%  Similarity=0.204  Sum_probs=100.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCc----------------------ccee-------------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------KAT----------------------IGAD-------------   44 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~------~~~----------------------~~~~-------------   44 (206)
                      ...++|+|+|.+|+|||||+|+|++..+.+..      .++                      ++.+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45679999999999999999999988764221      121                      0000             


Q ss_pred             ----------EEEEEEEeCCeEEEEEEEeCCChh-------------hhccchhhhhccCcEEE-EEEECCChhhHHHHH
Q 028647           45 ----------FLTKEVQFEDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNSMKSFDNLN  100 (206)
Q Consensus        45 ----------~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  100 (206)
                                .....+... ....+.+|||||..             .+......+++.++.++ +|+|+++..+.....
T Consensus       104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                      000000000 02468999999953             34455667788888766 799998754433333


Q ss_pred             HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      .++..+.    .   .+.|+++|+||+|+.+...  ...+.++......  +..+++++||++|.|+++++++|.+..
T Consensus       183 ~~~~~~~----~---~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          183 KIAKEVD----P---QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHC----T---TCSSEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHhC----C---CCCeEEEEEEccccCCCCc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            3443332    1   2789999999999986522  1222222110011  224688999999999999999998743

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.81  E-value=6.6e-19  Score=146.24  Aligned_cols=120  Identities=19%  Similarity=0.236  Sum_probs=84.7

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCC--CC------C----------CCCCccceeEEEEEEEeCCeEEEEEEEeC
Q 028647            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS------N----------QYKATIGADFLTKEVQFEDRLFTLQIWDT   64 (206)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   64 (206)
                      ....+..+|+|+|++|+|||||+++|+...  +.      .          ......+.......+.+.+  ..+.+|||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDT   84 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDT   84 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECC
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEEC
Confidence            345678999999999999999999998421  10      0          0011222222223333444  67899999


Q ss_pred             CChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ||+..+...+..+++.+|++|+|+|+++..+......|.. +...       ++|+++|+||+|+...
T Consensus        85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-------KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred             cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-------CCCEEEEEECCCcccC
Confidence            9999998899999999999999999998777666554443 2221       7899999999999764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.80  E-value=1e-18  Score=136.60  Aligned_cols=164  Identities=16%  Similarity=0.105  Sum_probs=110.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccchhh---hhccC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVA---FYRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~   81 (206)
                      ..|+++|++|||||||++.|++........+.++.......+.+++ ...+.++|+||..+    .......   .+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999987653322233333334344454544 23578999999632    2112222   24569


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647           82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (206)
                      +.+++++|++ ...+..+..+..++.......  ...|.++|+||+|+...    ...+.+.+.....+ .+++.+||.+
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g-~~vi~iSA~~  308 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEE----EAVKALADALAREG-LAVLPVSALT  308 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCH----HHHHHHHHHHHTTT-SCEEECCTTT
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhH----HHHHHHHHHHHhcC-CeEEEEECCC
Confidence            9999999997 455566666655554432100  05699999999998752    23344444544444 7899999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCc
Q 028647          162 GINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~~~~~~  181 (206)
                      ++|+++++++|.+.+.+...
T Consensus       309 g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          309 GAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             CTTHHHHHHHHHHHHHTSCC
T ss_pred             ccCHHHHHHHHHHHHHhccc
Confidence            99999999999999977654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=2.2e-18  Score=127.89  Aligned_cols=123  Identities=15%  Similarity=0.100  Sum_probs=83.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc-----
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-----   79 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   79 (206)
                      .+.++|+++|.+|+|||||+++|++..+. ....+..+.......+..++  ..+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            35799999999999999999999987753 22233334444455556666  47899999998776655444443     


Q ss_pred             ----cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           80 ----GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        80 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                          .+|++++|++++..........|+..+.......  ...|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence                7899999999876442222235555555443320  02489999999999643

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.80  E-value=1.8e-18  Score=143.73  Aligned_cols=167  Identities=14%  Similarity=0.194  Sum_probs=107.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEE-------EEEEe-------------------------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLT-------KEVQF-------------------------   52 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~-------~~~~~-------------------------   52 (206)
                      ...++|+|+|.+|+|||||+|+|++..+.+ ...+++......       .+..+                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            457999999999999999999999877543 233333100000       01111                         


Q ss_pred             ---------------------CCeE--EEEEEEeCCChhh---hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHH
Q 028647           53 ---------------------EDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF  106 (206)
Q Consensus        53 ---------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  106 (206)
                                           ....  ..+.||||||...   ....+..+++.+|++++|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                                 0000  2478999999654   3345667889999999999999887766554443322


Q ss_pred             HhhcCCCCCCCCcEEEEEeCCCCCCCCcc-cc-------cHHHHHH----HHHhc--------CCCcEEEeecc------
Q 028647          107 LIQASPSDPDNFPFVVLGNKIDVDGGNSR-VV-------SEKKARA----WCASK--------GNIPYFETSAK------  160 (206)
Q Consensus       107 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~-------~~~~~~~----~~~~~--------~~~~~~~~S~~------  160 (206)
                          ...   +.|+++|+||+|+...... ..       ..+.+..    ....+        ...+++++||+      
T Consensus       227 ----~~~---~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~  299 (695)
T 2j69_A          227 ----KGR---GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR  299 (695)
T ss_dssp             ----TTS---CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred             ----Hhh---CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence                111   6789999999998653200 00       0011211    11111        12479999999      


Q ss_pred             --------CCCCHHHHHHHHHHHHHhc
Q 028647          161 --------EGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       161 --------~~~~i~~l~~~l~~~~~~~  179 (206)
                              ++.|++++++.|.+.+...
T Consensus       300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          300 LKNPQADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             HHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             ccCchhhhhccCHHHHHHHHHHHHHHh
Confidence                    9999999999999877543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.79  E-value=4.4e-19  Score=134.84  Aligned_cols=120  Identities=14%  Similarity=0.174  Sum_probs=93.4

Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN  125 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  125 (206)
                      .+.+++||++|++.++..|..++++++++|+|+|++          +..++.....|+..+.....   ..++|+++++|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv~N  236 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIFLN  236 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEEEE
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEEEE
Confidence            367899999999999999999999999999999998          67788888888777765422   22789999999


Q ss_pred             CCCCCCCCc-------------ccccHHHHHHHH-Hhc-------------------------CCCcEEEeeccCCCCHH
Q 028647          126 KIDVDGGNS-------------RVVSEKKARAWC-ASK-------------------------GNIPYFETSAKEGINVE  166 (206)
Q Consensus       126 K~Dl~~~~~-------------~~~~~~~~~~~~-~~~-------------------------~~~~~~~~S~~~~~~i~  166 (206)
                      |+|+....-             .....+++.+++ ..+                         ..+.++++||+++.|++
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~  316 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK  316 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence            999854210             011344444433 223                         23678999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      .+|+.+.+.+++
T Consensus       317 ~vF~~v~~~Il~  328 (340)
T 4fid_A          317 RVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999987

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.79  E-value=9.9e-19  Score=140.95  Aligned_cols=117  Identities=19%  Similarity=0.270  Sum_probs=79.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------CCCccceeE--EEEEEEeCCeEEEEEEEe
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--------------------YKATIGADF--LTKEVQFEDRLFTLQIWD   63 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~--~~~~~~~~~~~~~~~i~D   63 (206)
                      .+.++|+++|++|+|||||+++|+.......                    .+...+.++  ....+.+.+  ..+.+||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            4579999999999999999999986321100                    001111111  122233344  6789999


Q ss_pred             CCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |||+..+......+++.+|++|+|+|++++..... ..+    +..+...   ++|+++++||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~----~~~~~~~---~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKL----MEVTRLR---DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHH----HHHHTTT---TCCEEEEEECTTSCCS
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHH----HHHHHHc---CCCEEEEEcCcCCccc
Confidence            99999998888889999999999999987643222 222    2222221   7899999999999764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.78  E-value=1.5e-19  Score=136.48  Aligned_cols=167  Identities=17%  Similarity=0.240  Sum_probs=88.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC-CCCCCCC--------CccceeEEEEEEEeCCeEEEEEEEeCCCh-------hh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK-KFSNQYK--------ATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   69 (206)
                      ...++|+|+|++|+|||||+++|++. .++....        ++.............+....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998865 3332221        11111111122222344467899999997       44


Q ss_pred             hccchh-------hhhcc-------------CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           70 FQSLGV-------AFYRG-------------ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        70 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      +.....       .+++.             +++++++.+.+.. +++....   .++..+..    +.|+++|+||+|+
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~---~~l~~l~~----~~~iilV~~K~Dl  167 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV---AFMKAIHN----KVNIVPVIAKADT  167 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH---HHHHHHTT----TSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH---HHHHHHHh----cCCEEEEEEeCCC
Confidence            443333       33322             3446666654321 1222211   22222221    6799999999999


Q ss_pred             CCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647          130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      ..........+++.+++...+ ++++++||+++ |++++|..+.+.+....|-
T Consensus       168 ~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~  218 (301)
T 2qnr_A          168 LTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASIPF  218 (301)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence            764323344567788888886 89999999999 9999999999999766553

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=2.4e-18  Score=142.41  Aligned_cols=115  Identities=16%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------------CCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      .+..+|+++|+.|+|||||+++|++.......                  ....+.......+...  .+.+.+|||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence            55689999999999999999999843221000                  0111222222233333  467899999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      ..+......+++.+|++++|+|+.+....... .++..+...       ++|+++++||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~-------~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL-------GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT-------TCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc-------cCCEEEEecCCchh
Confidence            99988899999999999999999876443332 333333221       78999999999987

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.78  E-value=3.5e-19  Score=135.53  Aligned_cols=115  Identities=8%  Similarity=0.111  Sum_probs=69.7

Q ss_pred             EEEEEEeCCChhh-------------hccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q 028647           57 FTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVV  122 (206)
Q Consensus        57 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~iv  122 (206)
                      ..+.+|||||...             +......++..+|++++|+|.++.. .......++..+    ..   .+.|+++
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~---~~~~~i~  203 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DP---EGKRTIG  203 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CS---SCSSEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CC---CCCcEEE
Confidence            3689999999643             4455667788999999999974322 101111222222    21   1789999


Q ss_pred             EEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee---ccC---CCCHHHHHHHHHHHHHhcCc
Q 028647          123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS---AKE---GINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S---~~~---~~~i~~l~~~l~~~~~~~~~  181 (206)
                      |+||+|+.....  ...+.+......++ ..+++++   +.+   +.|+.++++.+.+.+.....
T Consensus       204 v~NK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          204 VITKLDLMDKGT--DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             EEECTTSSCSSC--CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             EEcCcccCCcch--HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            999999986532  12222221111111 3455554   455   78999999999988866443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.77  E-value=1.7e-17  Score=138.04  Aligned_cols=120  Identities=18%  Similarity=0.126  Sum_probs=83.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------CCCccceeEEEEEEEeC-----CeEEEEEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ----------------YKATIGADFLTKEVQFE-----DRLFTLQI   61 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~i   61 (206)
                      .++..+|+|+|+.|+|||||+++|+...  +...                .....+.......+.+.     +..+.+.|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            4567899999999999999999997531  1100                01112222222223332     23378999


Q ss_pred             EeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      |||||+..|...+...++.+|++|+|+|+++.........|. ....       .++|+++|+||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~-------~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK-------YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH-------cCCCEEEEEeCCCcccc
Confidence            999999999888999999999999999999876544443332 2211       17899999999998764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=9.3e-18  Score=139.43  Aligned_cols=118  Identities=21%  Similarity=0.224  Sum_probs=83.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------C-----CCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVN--KKFSN-----------Q-----YKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (206)
                      ..+..+|+|+|++|+|||||+++|+.  +.+..           .     ..+..+.......+.+.+  ..+.||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            35679999999999999999999984  22110           0     011222222223344444  6789999999


Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      +..+...+..+++.+|++++|+|++++.+......|.. +...       ++|+++|+||+|+...
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~-------~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY-------GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc-------CCCEEEEEECCCcccc
Confidence            99998888999999999999999998776665544432 2221       7899999999999764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=1.5e-18  Score=135.45  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=48.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE---------------------eCC-eEEEEEEEeCCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ---------------------FED-RLFTLQIWDTAG   66 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g   66 (206)
                      ++|+++|.+|+|||||+|+|++........++++.........                     +++ ...++.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998763323333333322222111                     122 246899999999


Q ss_pred             hhhh----ccc---hhhhhccCcEEEEEEECCCh
Q 028647           67 QERF----QSL---GVAFYRGADCCVLVYDVNSM   93 (206)
Q Consensus        67 ~~~~----~~~---~~~~~~~~d~~i~v~d~~~~   93 (206)
                      ....    ...   ....++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7431    112   22456889999999999874

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=7.4e-19  Score=136.09  Aligned_cols=158  Identities=13%  Similarity=0.203  Sum_probs=98.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE-------------------------------------
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE-------------------------------------   49 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------------   49 (206)
                      ...+|+|+|++|||||||+++|++..+.+......+.......                                     
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            3459999999999999999999998764333222211100000                                     


Q ss_pred             ---------------EEe-CCeEEEEEEEeCCChhhh-------------ccchhhhhccCcEEEEEEECCChhhHHHHH
Q 028647           50 ---------------VQF-EDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNSMKSFDNLN  100 (206)
Q Consensus        50 ---------------~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  100 (206)
                                     +.+ ......+.+|||||...+             ......++.++|++++++|..+.+...  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                           000 011124789999997654             455677889999999999876533221  1


Q ss_pred             HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647          101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA  173 (206)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~  173 (206)
                      .++..+ .....   .+.|+++|+||+|+....  ....+....+...++ .+++.++++.+.++++.+..+.
T Consensus       191 ~~~~l~-~~~~~---~~~~~i~V~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 DAIKIS-REVDP---SGDRTFGVLTKIDLMDKG--TDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHH-HHSCT---TCTTEEEEEECGGGCCTT--CCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHH-HHhcc---cCCCEEEEEeCCccCCCc--ccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHHH
Confidence            222222 22222   267999999999998652  233333333333344 7789999999888877655433

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.75  E-value=4.1e-17  Score=121.52  Aligned_cols=122  Identities=18%  Similarity=0.173  Sum_probs=78.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchh-------hh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-------AF   77 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~   77 (206)
                      ...++|+++|.+|+|||||+|+|++..+.. ...+..+...........+  ..+.+|||||...+.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            357999999999999999999999877532 2222223233333344444  6789999999765543222       11


Q ss_pred             --hccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           78 --YRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        78 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                        ...+|++++|+|++... +.. ...|+..+...+...  ...|+++|+||+|+...
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence              24699999999987532 222 235555554443210  02699999999998754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.75  E-value=2.8e-17  Score=133.04  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=84.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC------------------C----CCCCCCccceeEEEEEEEeCCeEEEEEEEe
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKK------------------F----SNQYKATIGADFLTKEVQFEDRLFTLQIWD   63 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (206)
                      .+..||+|+|+.++|||||..+|+...                  +    ....+...+.......+.+.+  ..+.|+|
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID  106 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD  106 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence            357899999999999999999986211                  1    112233333333444455555  6789999


Q ss_pred             CCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                      |||+..|.......++-+|++|+|+|+...-..++..-|.... ..       ++|.++++||+|....+
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~-------~lp~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR-------ATPVMTFVNKMDREALH  168 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT-------TCCEEEEEECTTSCCCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh-------CCceEEEEecccchhcc
Confidence            9999999999999999999999999999865545444443222 21       88999999999997754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.74  E-value=3.4e-18  Score=132.04  Aligned_cols=107  Identities=18%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (206)
                      +.+.|+||||..   ......+..+|++++|+|....+....+.       .     .....|+++|+||+|+.+.....
T Consensus       172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~-----~~~~~p~ivVlNK~Dl~~~~~~~  236 (355)
T 3p32_A          172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIK-------K-----GVLELADIVVVNKADGEHHKEAR  236 (355)
T ss_dssp             CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCC-------T-----TSGGGCSEEEEECCCGGGHHHHH
T ss_pred             CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHH-------H-----hHhhcCCEEEEECCCCcChhHHH
Confidence            568899999943   22334458899999999987654332111       0     01156999999999986532122


Q ss_pred             ccHHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          137 VSEKKARAWCASKG------NIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       137 ~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ...++........+      ..+++++||++|.|+++++++|.+.+..
T Consensus       237 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          237 LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            22223333222221      3689999999999999999999998755

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.72  E-value=5.5e-18  Score=122.56  Aligned_cols=158  Identities=16%  Similarity=0.130  Sum_probs=94.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCCccce--------eEEEEEEEe----------------CCe
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------YKATIGA--------DFLTKEVQF----------------EDR   55 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~------~~~~~~~--------~~~~~~~~~----------------~~~   55 (206)
                      ....+|+++|.+|+|||||+++|+.......      ..+..+.        ......+..                ...
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            3467999999999999999999986521110      0111000        000011111                011


Q ss_pred             EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR  135 (206)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (206)
                      ...+.+|||+|+.....   .+....+.+++|+|+.....  ....+....          +.|+++|+||+|+.+.  .
T Consensus       108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~----------~~~~iiv~NK~Dl~~~--~  170 (221)
T 2wsm_A          108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF----------RVADLIVINKVALAEA--V  170 (221)
T ss_dssp             TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH----------HTCSEEEEECGGGHHH--H
T ss_pred             CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh----------hcCCEEEEecccCCcc--h
Confidence            24577889888411110   11124688999999876532  111111111          5689999999998642  1


Q ss_pred             cccHHHHHHHHHhc-CCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647          136 VVSEKKARAWCASK-GNIPYFETSAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       136 ~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ....++..+++... +.++++++|+++|.|+++++++|.+.+....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            22345555555543 3478999999999999999999999885543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.72  E-value=1.2e-18  Score=134.62  Aligned_cols=159  Identities=15%  Similarity=0.216  Sum_probs=92.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----------------------------------------
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL----------------------------------------   46 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~----------------------------------------   46 (206)
                      ...+|+|+|.+|+|||||+|+|++..+.+......+....                                        
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999988764222111000000                                        


Q ss_pred             ---------EEEEEe-CCeEEEEEEEeCCChh-------------hhccchhhhhccCc-EEEEEEECCChhhHHHHHHH
Q 028647           47 ---------TKEVQF-EDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGAD-CCVLVYDVNSMKSFDNLNNW  102 (206)
Q Consensus        47 ---------~~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  102 (206)
                               ...+.+ ......+.||||||..             .+......++...+ ++++|+|++....-.....+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence                     000000 0112468999999953             33445556666655 55556676543221222223


Q ss_pred             HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH--HHHhcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647          103 REEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA--WCASKGNIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       103 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                      +..+    ..   .+.|+++|+||+|+.+....  ..+....  +....+..+++++||+++.|++++++.+.+
T Consensus       190 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          190 AKEV----DP---QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHH----CT---TCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHh----Cc---CCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3332    22   27899999999999765321  1111110  000112246788999999999999999877

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=130.04  Aligned_cols=161  Identities=15%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----   72 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----   72 (206)
                      .-.++|+|+|++|+|||||++.|++..+....        .++.+.......+...+....+++||++|......     
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            44688999999999999999999987653111        11111111111112233334789999999654311     


Q ss_pred             --------------------chhhhhccC--cEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           73 --------------------LGVAFYRGA--DCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        73 --------------------~~~~~~~~~--d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                                          ....++.++  |+++++.+.+. .+++.. ..|+..+    ..    ++|+|+|+||+|+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L----~~----~v~iIlVinK~Dl  179 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL----HE----KVNIIPLIAKADT  179 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH----TT----TSEEEEEEESTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH----hc----cCcEEEEEEcccC
Confidence                                112233343  44555555431 122222 2344443    21    7899999999999


Q ss_pred             CCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      ..........+.+.+++...+ ++++++|+.++.++++++..+.+.+
T Consensus       180 l~~~ev~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          180 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHT-CCCCCCC-----------------C
T ss_pred             ccHHHHHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            764222222366777777775 8999999999999999887777654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=1.3e-17  Score=126.02  Aligned_cols=134  Identities=19%  Similarity=0.151  Sum_probs=105.1

Q ss_pred             HHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-hHHHHH
Q 028647           23 SLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLN  100 (206)
Q Consensus        23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  100 (206)
                      +|+.+++.+.|. ..+.++.+..+. ..+..++   .+.+||+  ++++..++..+++++|++++|+|++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577788888887 788899885543 3332222   6789999  8889999999999999999999999987 788888


Q ss_pred             HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEeeccCCCCHHHHHHHHH
Q 028647          101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFETSAKEGINVEEAFQCIA  173 (206)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~~~l~  173 (206)
                      .|+..+..  .     ++|+++|+||+|+.+.  +..  ++..+++..+.. .+++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~--~-----~~piilv~NK~DL~~~--~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK--N-----ELETVMVINKMDLYDE--DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH--T-----TCEEEEEECCGGGCCH--HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH--C-----CCCEEEEEeHHHcCCc--hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            88876643  1     7899999999999754  221  445566655543 6899999999999999998764

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.70  E-value=3.7e-17  Score=138.33  Aligned_cols=120  Identities=18%  Similarity=0.231  Sum_probs=85.2

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC------------CCC----CCCCccce--eEEEEEEE------------eC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK------------FSN----QYKATIGA--DFLTKEVQ------------FE   53 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~------------~~~----~~~~~~~~--~~~~~~~~------------~~   53 (206)
                      .....++|+|+|++++|||||+++|+...            +..    ......+.  ......+.            .+
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            34567899999999999999999998641            110    01111121  11122222            23


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG  131 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  131 (206)
                      +..+.+.||||||+..|...+..+++.+|++|+|+|++++.+++....|.... .  .     ++|+++++||+|+..
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~-----~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--E-----RIKPVVVINKVDRAL  164 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--T-----TCEEEEEEECHHHHH
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--c-----CCCeEEEEECCCcch
Confidence            44688999999999999999999999999999999999987777655444322 1  1     789999999999863

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=1e-15  Score=117.38  Aligned_cols=84  Identities=23%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCCChhhhc--
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ--   71 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~--   71 (206)
                      ++|+++|.||+|||||+|+|++........++++.......+.+.+.               ...+.+||+||.....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987644333343333333333444442               1468999999975432  


Q ss_pred             -----cchhhhhccCcEEEEEEECCC
Q 028647           72 -----SLGVAFYRGADCCVLVYDVNS   92 (206)
Q Consensus        72 -----~~~~~~~~~~d~~i~v~d~~~   92 (206)
                           ......++.+|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence                 223345789999999999985

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.68  E-value=4e-16  Score=121.15  Aligned_cols=128  Identities=12%  Similarity=0.090  Sum_probs=97.9

Q ss_pred             EEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCC
Q 028647           48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN  117 (206)
Q Consensus        48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~  117 (206)
                      ..+.+++  +.+++||++|++.+...|..++++++++|+|+|+++          ..+++....|+..+....   ...+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~---~~~~  284 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR---WLRT  284 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT---TCSS
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc---cCCC
Confidence            4455565  789999999999999999999999999999999998          889999999988876542   1237


Q ss_pred             CcEEEEEeCCCCCCCCcc--c--------------------------ccHHHHHHHH-----Hhc-------CCCcEEEe
Q 028647          118 FPFVVLGNKIDVDGGNSR--V--------------------------VSEKKARAWC-----ASK-------GNIPYFET  157 (206)
Q Consensus       118 ~p~ivv~nK~Dl~~~~~~--~--------------------------~~~~~~~~~~-----~~~-------~~~~~~~~  157 (206)
                      +|+++|+||+|+....-.  .                          ...+++..|+     ...       ..+.+++|
T Consensus       285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T  364 (402)
T 1azs_C          285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT  364 (402)
T ss_dssp             CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred             CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence            899999999998532100  0                          0134555543     211       23567899


Q ss_pred             eccCCCCHHHHHHHHHHHHHhcC
Q 028647          158 SAKEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~~~  180 (206)
                      ||+++.||+++|+.+.+.++...
T Consensus       365 SA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          365 CAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecCcCHHHHHHHHHHHHHHHH
Confidence            99999999999999998887643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.67  E-value=7.9e-18  Score=129.52  Aligned_cols=106  Identities=13%  Similarity=0.043  Sum_probs=62.8

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (206)
                      +.+.++||+|...   ........+|++++|+|+..+.....+..   .+    .     ..|.++|+||+|+.+.....
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l-----~~~~ivVlNK~Dl~~~~~~~  231 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----I-----EMADLVAVTKSDGDLIVPAR  231 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------C-----CSCSEEEECCCSGGGHHHHH
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----H-----hcCCEEEEeeecCCCchhHH
Confidence            4678999999531   12344678999999999986543221111   11    1     45889999999986421111


Q ss_pred             ccHHHHHHHHHh------cCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          137 VSEKKARAWCAS------KGNIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       137 ~~~~~~~~~~~~------~~~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ...+........      ....+++.+|+.+|.|+++++++|.+.+.
T Consensus       232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            111112111111      11357899999999999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.9e-15  Score=116.46  Aligned_cols=156  Identities=16%  Similarity=0.127  Sum_probs=101.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYR   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   79 (206)
                      -..+|+++|.||+|||||+|+|++........+++|.+.....+.+.+  .+++++|+||.-.-       .......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            346899999999999999999999876667778888888888888888  46789999994221       122345668


Q ss_pred             cCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC------cccccHHHHHHHHHhcCCC
Q 028647           80 GADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN------SRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~  152 (206)
                      .+|++++|+|+++|.. .+.+..-+..+...+.     +.|.++++||.|...-.      ......++.+.+...+. .
T Consensus       149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~-----~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~-l  222 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIRLN-----KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR-I  222 (376)
T ss_dssp             HCSEEEEEEETTSHHHHHHHHHHHHHHTTEEET-----CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT-C
T ss_pred             hcCccccccccCccHHHHHHHHHHHHHhhHhhc-----cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc-c
Confidence            8999999999998743 2222222222211111     56888999999974311      12234555555554443 3


Q ss_pred             cEEEeeccCCCCHHHHHH
Q 028647          153 PYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~  170 (206)
                      ..-++....+.+.+++.+
T Consensus       223 t~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          223 NSAEIAFRCDATVDDLID  240 (376)
T ss_dssp             CSEEEEECSCCCHHHHHH
T ss_pred             cCCCeeecccCCHHHHHH
Confidence            333333344445555444

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.66  E-value=3e-17  Score=135.31  Aligned_cols=168  Identities=17%  Similarity=0.222  Sum_probs=109.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC--CCCC----CC----------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK--KFSN----QY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~--~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      ..||+|+|+.++|||||..+|+..  ....    ..          +..-+.++......+......+.|+|||||..|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            368999999999999999998631  1110    00          0001222222223333344678999999999999


Q ss_pred             cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH--------
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR--------  143 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--------  143 (206)
                      ......++-+|++|+|+|+...-..++..-|. .....       ++|.++++||+|....+.... .++++        
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~-------~lp~i~~INKmDr~~a~~~~~-~~~i~~~l~~~~~  152 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM-------GIPTIFFINKIDQNGIDLSTV-YQDIKEKLSAEIV  152 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH-------TCSCEECCEECCSSSCCSHHH-HHHHHHTTCCCCC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc-------CCCeEEEEeccccccCCHHHH-HHHHHHHhCCCcc
Confidence            99999999999999999998754433332232 22222       789999999999876542111 11100        


Q ss_pred             ----------------------------------HH------------------HHhcCCCcEEEeeccCCCCHHHHHHH
Q 028647          144 ----------------------------------AW------------------CASKGNIPYFETSAKEGINVEEAFQC  171 (206)
Q Consensus       144 ----------------------------------~~------------------~~~~~~~~~~~~S~~~~~~i~~l~~~  171 (206)
                                                        .+                  .......|++..||.++.|++.|++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~  232 (638)
T 3j25_A          153 IKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEV  232 (638)
T ss_dssp             CCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHH
T ss_pred             ccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhh
Confidence                                              00                  11122367889999999999999999


Q ss_pred             HHHHHHhcCcccc
Q 028647          172 IAKNALKSGEEEE  184 (206)
Q Consensus       172 l~~~~~~~~~~~~  184 (206)
                      +.+.++......+
T Consensus       233 i~~~~p~p~~~~~  245 (638)
T 3j25_A          233 ITNKFYSSTHRGP  245 (638)
T ss_dssp             HHHSCCCSGGGSC
T ss_pred             hhccccCcccchh
Confidence            9988765444333

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.66  E-value=3.3e-15  Score=124.65  Aligned_cols=120  Identities=19%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--------C------CC----CCCCCccceeEEEEEEEeCC-----eEEEEEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK--------K------FS----NQYKATIGADFLTKEVQFED-----RLFTLQIW   62 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~--------~------~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~   62 (206)
                      ++..||+|+|+.++|||||..+|+..        .      +.    ...+...+.......+.+.+     ..+.+.|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            56789999999999999999998631        1      11    12222333333333333332     35789999


Q ss_pred             eCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                      |||||-.|.......++-+|++|+|+|+...-..++..-|.+.. ..       ++|.++++||+|....+
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~-~~-------~lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN-KY-------GVPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-HH-------TCCEEEEEECSSSTTCC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH-Hc-------CCCeEEEEccccccCcc
Confidence            99999999999999999999999999999765444433333322 22       88999999999986543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.65  E-value=2.3e-16  Score=114.34  Aligned_cols=155  Identities=17%  Similarity=0.157  Sum_probs=89.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE------------EEEEEeC-Ce------------------
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------TKEVQFE-DR------------------   55 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   55 (206)
                      +.++|+|+|.+|||||||+++|+...+.....++.+.++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999976544322222222211            0111111 10                  


Q ss_pred             -EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647           56 -LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS  134 (206)
Q Consensus        56 -~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  134 (206)
                       ...+.++|++|.-...   ..+-...+..+.++|........  ..+...+          +.|.++|+||+|+.+.  
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~~----------~~~~iiv~NK~Dl~~~--  179 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EKHPGIM----------KTADLIVINKIDLADA--  179 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TTCHHHH----------TTCSEEEEECGGGHHH--
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hhhhhHh----------hcCCEEEEeccccCch--
Confidence             0124445555521000   01111234456666643211100  0011111          5688999999998643  


Q ss_pred             ccccHHHHHHHHHhc-CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          135 RVVSEKKARAWCASK-GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      .....++..+++..+ +..+++++||++|.|++++|++|.+.+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            223456666666654 34789999999999999999999988754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.64  E-value=1.4e-16  Score=122.25  Aligned_cols=106  Identities=14%  Similarity=0.150  Sum_probs=66.3

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (206)
                      +.+.|+||||......   .....+|++++|+|+...+....+..   ..         .+.|.++|+||+|+.+.....
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~~~~~  213 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNHTNVA  213 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCChHHHH
Confidence            5689999999543322   24578999999999975532211100   00         045889999999987531111


Q ss_pred             ccHHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          137 VSEKKARAWCASKG------NIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       137 ~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ...++.++....++      ..+++++||++|.|+++++++|.+.+.
T Consensus       214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11123333222222      357899999999999999999999775

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.64  E-value=2.1e-16  Score=131.05  Aligned_cols=160  Identities=15%  Similarity=0.186  Sum_probs=97.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE----------------------------------------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF----------------------------------------   45 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~----------------------------------------   45 (206)
                      ....+|+|+|.+++|||||+|.|++..+.+......|..+                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            3457999999999999999999999876322211111100                                        


Q ss_pred             -----------EEEEEEeCCeEEEEEEEeCCChhh-------------hccchhhhh-ccCcEEEEEEECCChhhHHHHH
Q 028647           46 -----------LTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNSMKSFDNLN  100 (206)
Q Consensus        46 -----------~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  100 (206)
                                 ....+...+ ..++.|+||||...             +......++ ..+|++++|+|++.........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                       011111111 12478999999432             222334444 4689999999998643322222


Q ss_pred             HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH-H-HHhcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647          101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA-W-CASKGNIPYFETSAKEGINVEEAFQCIAKN  175 (206)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  175 (206)
                      .++..+.    ..   +.|+++|+||+|+.......  .+.... . ....+..+++++||.+|.|+++|++.+.+.
T Consensus       208 ~ll~~L~----~~---g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVD----PQ---GQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHC----TT---CSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHH----hc---CCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            2333332    11   78999999999998653221  111110 0 001233567889999999999999999874

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.63  E-value=2.8e-16  Score=127.32  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEE-----EeC----------------------Ce
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEV-----QFE----------------------DR   55 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~-----~~~----------------------~~   55 (206)
                      ...++|+|+|.+|+|||||+|+|++..+.   ....++++........     ..+                      ++
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45689999999999999999999998763   2333333211100000     000                      00


Q ss_pred             E----------EEEEEEeCCChhh-----------hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 028647           56 L----------FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD  114 (206)
Q Consensus        56 ~----------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  114 (206)
                      -          ..+.||||||...           +......++..+|++++|+|+++....+....++..+.    .. 
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~-  217 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GH-  217 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TC-
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hc-
Confidence            0          2478999999754           44556677889999999999987544444445544432    11 


Q ss_pred             CCCCcEEEEEeCCCCCCC
Q 028647          115 PDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus       115 ~~~~p~ivv~nK~Dl~~~  132 (206)
                        +.|+++|+||+|+...
T Consensus       218 --~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          218 --EDKIRVVLNKADMVET  233 (550)
T ss_dssp             --GGGEEEEEECGGGSCH
T ss_pred             --CCCEEEEEECCCccCH
Confidence              6799999999999763

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.63  E-value=1.6e-15  Score=116.97  Aligned_cols=84  Identities=23%  Similarity=0.141  Sum_probs=55.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-------------------eEEEEEEEeCCChhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-------------------RLFTLQIWDTAGQER   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~   69 (206)
                      ++|+++|.||+|||||+++|++........+..+.........+.+                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999997653222222222222222222221                   224689999999754


Q ss_pred             hc-------cchhhhhccCcEEEEEEECCC
Q 028647           70 FQ-------SLGVAFYRGADCCVLVYDVNS   92 (206)
Q Consensus        70 ~~-------~~~~~~~~~~d~~i~v~d~~~   92 (206)
                      ..       ......++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            32       223345789999999999975

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.59  E-value=5.9e-15  Score=109.28  Aligned_cols=115  Identities=13%  Similarity=-0.017  Sum_probs=68.1

Q ss_pred             EEEEEEeCCChhhhccchh------hhhccCcEEEEEEECCChhhHHHHH---HHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLN---NWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                      +.+.||||||.........      ..+.. +++++++|+....+.....   .+........      +.|+++|+||+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~  181 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV  181 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence            4688999999765433211      23455 8889999876432222221   1111111111      67999999999


Q ss_pred             CCCCCCcccccHHH------HH-H-----------------HHHhcC-CCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          128 DVDGGNSRVVSEKK------AR-A-----------------WCASKG-NIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       128 Dl~~~~~~~~~~~~------~~-~-----------------~~~~~~-~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      |+..........+.      .. .                 +...++ ..+++++|++++.|+++++++|.+.+..
T Consensus       182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            98753210000110      00 0                 123333 2489999999999999999999987743

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.53  E-value=2.2e-14  Score=109.83  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (206)
                      +.+.|+||+|....   .......+|.+++++|+...+..+.+...   +.         ..+.++++||+|+...  ..
T Consensus       148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~--~~  210 (337)
T 2qm8_A          148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDG--ER  210 (337)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCC--HH
T ss_pred             CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCc--hh
Confidence            56889999995421   12345689999999998654321111110   10         2366888899997543  22


Q ss_pred             ccHHHHHHHHHh---cC------CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          137 VSEKKARAWCAS---KG------NIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       137 ~~~~~~~~~~~~---~~------~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ......+++...   ..      ..+++.+|+.++.|++++++.|.+...
T Consensus       211 ~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222223333221   11      367899999999999999999988764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.44  E-value=9.6e-14  Score=97.47  Aligned_cols=110  Identities=9%  Similarity=-0.046  Sum_probs=72.9

Q ss_pred             CChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeCC-CCCCCCcccccHHHH
Q 028647           65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNKI-DVDGGNSRVVSEKKA  142 (206)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~  142 (206)
                      +|++.++..|.+++.++|++|||+|.+|.+-++ ...-+.++...+.... ..+.|++|++||. |++++..    ..++
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams----~~EI  184 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP----CFYL  184 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC----HHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC----HHHH
Confidence            478899999999999999999999999875544 3333334444444432 3589999999985 7865432    2222


Q ss_pred             HHHH---HhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          143 RAWC---ASKGNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       143 ~~~~---~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      .+..   .....+.+..|||.+|+|+.+.++||.+.+..+
T Consensus       185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            2221   112358899999999999999999999877443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.42  E-value=5e-12  Score=98.12  Aligned_cols=87  Identities=20%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCCChhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   69 (206)
                      ....+++++|++|+|||||+|.|++... .....++.+..+....+.+.+.               ...+.++|+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4467999999999999999999999766 4455565555555555555541               13578999999432


Q ss_pred             -------hccchhhhhccCcEEEEEEECCC
Q 028647           70 -------FQSLGVAFYRGADCCVLVYDVNS   92 (206)
Q Consensus        70 -------~~~~~~~~~~~~d~~i~v~d~~~   92 (206)
                             +.......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22344556688999999999863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.41  E-value=8.3e-13  Score=99.65  Aligned_cols=97  Identities=19%  Similarity=0.124  Sum_probs=76.6

Q ss_pred             hhhhccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc-HHHHHH
Q 028647           67 QERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS-EKKARA  144 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~  144 (206)
                      ++++..+...+++++|++++|+|++++. ++..+..|+..+..  .     ++|+++|+||+|+.+.  .... .++..+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~-----~~~~ilV~NK~DL~~~--~~v~~~~~~~~  136 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--F-----KVEPVIVFNKIDLLNE--EEKKELERWIS  136 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--T-----TCEEEEEECCGGGCCH--HHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--C-----CCCEEEEEEcccCCCc--cccHHHHHHHH
Confidence            5667777788999999999999999986 88888888876543  1     7899999999999753  2212 345555


Q ss_pred             HHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647          145 WCASKGNIPYFETSAKEGINVEEAFQCIA  173 (206)
Q Consensus       145 ~~~~~~~~~~~~~S~~~~~~i~~l~~~l~  173 (206)
                      +....+ .+++++||++|.|++++++.+.
T Consensus       137 ~~~~~g-~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          137 IYRDAG-YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence            666665 7899999999999999987653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.38  E-value=4.5e-13  Score=103.76  Aligned_cols=88  Identities=22%  Similarity=0.135  Sum_probs=53.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCCChhhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERF   70 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~   70 (206)
                      ...++|+++|.+|+|||||+|+|++..+.....+++|..+....+.+.+.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45689999999999999999999988665555555555555555555432               235899999996654


Q ss_pred             cc-------chhhhhccCcEEEEEEECCCh
Q 028647           71 QS-------LGVAFYRGADCCVLVYDVNSM   93 (206)
Q Consensus        71 ~~-------~~~~~~~~~d~~i~v~d~~~~   93 (206)
                      ..       .....++.+|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            33       456678899999999999753

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.29  E-value=7.5e-13  Score=97.37  Aligned_cols=110  Identities=9%  Similarity=-0.046  Sum_probs=74.1

Q ss_pred             CCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeC-CCCCCCCcccccHHH
Q 028647           64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNK-IDVDGGNSRVVSEKK  141 (206)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~  141 (206)
                      .+||+..+..|.+++.++|++|||+|.+|.+-++ ...-+.++...+.+.. ..+.|++|++|| .|+.++..    ..+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams----~~E  268 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP----CFY  268 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC----HHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC----HHH
Confidence            4578899999999999999999999999876544 2222222222222111 238899999996 68876532    222


Q ss_pred             HHHHH---HhcCCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          142 ARAWC---ASKGNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       142 ~~~~~---~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +.+..   .....+.+..|||.+|+|+.+.++||.+.+..
T Consensus       269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            22221   11234789999999999999999999988743

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.17  E-value=1.1e-10  Score=91.23  Aligned_cols=143  Identities=14%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------------
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------------   70 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------   70 (206)
                      .++++|+|++|+|||||++.|.+..+....    .+..............+....++++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            467999999999999999999886532111    111111111111122222236789999873211             


Q ss_pred             -ccch----hhh---------hcc--CcE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           71 -QSLG----VAF---------YRG--ADC-CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        71 -~~~~----~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                       ...+    ...         ...  .|+ ++++.|...+-+...     .++...+..    +.|+|+|.||+|.....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~~----~~~vI~Vi~KtD~Lt~~  192 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLDS----KVNIIPIIAKADAISKS  192 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTCS----CSEEEEEESCGGGSCHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHhh----CCCEEEEEcchhccchH
Confidence             0011    111         111  233 555666654332222     133333332    78999999999987643


Q ss_pred             cccccHHHHHHHHHhcCCCcEEEeecc
Q 028647          134 SRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      +.....+.+.+..... +++++.+|..
T Consensus       193 E~~~l~~~I~~~L~~~-gi~I~~is~~  218 (427)
T 2qag_B          193 ELTKFKIKITSELVSN-GVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHHHBTT-BCCCCCCC--
T ss_pred             HHHHHHHHHHHHHHHc-CCcEEecCCC
Confidence            2222333333322333 4778887754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.16  E-value=5.8e-12  Score=97.56  Aligned_cols=140  Identities=17%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC------CCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-------cchh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGV   75 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~   75 (206)
                      .+|+++|.+|+|||||+|+|++.      .......++++..  ...+.+...   +.++||||.....       ....
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999975      2222233333333  333444432   6799999943211       1111


Q ss_pred             hhh---ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCC
Q 028647           76 AFY---RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        76 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      ..+   +..+.++++++......+..+..     +..+.   ..+.|+++++||.|..+.   .........+.+.++ .
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~---~~~~~~~~v~~k~d~~~~---~~~~~~~~~~~~~~g-~  305 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIK---GGRRSFVCYMANELTVHR---TKLEKADSLYANQLG-E  305 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEE---SSSEEEEEEECTTSCEEE---EEGGGHHHHHHHHBT-T
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE-----EEEcc---CCCceEEEEecCCccccc---ccHHHHHHHHHHhcC-C
Confidence            222   56899999998843211111100     11111   126899999999998763   333444444555565 5


Q ss_pred             cEEEeeccCCCCH
Q 028647          153 PYFETSAKEGINV  165 (206)
Q Consensus       153 ~~~~~S~~~~~~i  165 (206)
                      .+.+.++.+.+++
T Consensus       306 ~l~p~~~~~~~~~  318 (369)
T 3ec1_A          306 LLSPPSKRYAAEF  318 (369)
T ss_dssp             TBCSSCGGGTTTC
T ss_pred             ccCCCCchhhhhc
Confidence            6666666654444

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.11  E-value=1.5e-10  Score=85.79  Aligned_cols=139  Identities=16%  Similarity=0.206  Sum_probs=71.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CCccceeEEEEEEEeCCeE--EEEEEEeCCChhhhc-------
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY-------KATIGADFLTKEVQFEDRL--FTLQIWDTAGQERFQ-------   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~i~D~~g~~~~~-------   71 (206)
                      .++++++|++|+|||||++.|++...+...       ....+.......+......  ..++++|++|.....       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            489999999999999999999864322110       0000000011111122222  257899999821100       


Q ss_pred             ---cch------------------hhhhccCcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           72 ---SLG------------------VAFYRGADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        72 ---~~~------------------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                         ...                  ...+..+++.++++|.. .+-+... ...+..+    ..    ..++++|++|+|.
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L----~~----~~~vI~Vi~K~D~  152 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL----SK----VVNIIPVIAKADT  152 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH----HT----TSEEEEEETTGGG
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH----Hh----cCcEEEEEecccc
Confidence               000                  01123468889999865 2222111 2222222    11    3689999999998


Q ss_pred             CCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647          130 DGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      ....+.....+.+.+.....+ +.+++
T Consensus       153 lt~~e~~~~k~~i~~~l~~~~-i~i~~  178 (270)
T 3sop_A          153 MTLEEKSEFKQRVRKELEVNG-IEFYP  178 (270)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT-CCCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHcC-ccccC
Confidence            765433344444454445554 55543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.09  E-value=2.5e-10  Score=91.36  Aligned_cols=153  Identities=17%  Similarity=0.168  Sum_probs=83.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHh------cCCCC----CCCCCcc-----------ceeEEEEEEE-------------
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYV------NKKFS----NQYKATI-----------GADFLTKEVQ-------------   51 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------   51 (206)
                      .++..|+++|.+||||||++++|.      +.+..    +.+.+..           +..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998      33211    0111110           0111110000             


Q ss_pred             eCCeEEEEEEEeCCChhhhcc----chhhh--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEE
Q 028647           52 FEDRLFTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLG  124 (206)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~  124 (206)
                      .....+.+.|+||||......    .....  +..+|.+++|+|+.......   .....+..        .+|+ ++|+
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVl  247 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIV  247 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEE
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEE
Confidence            000225688999999643211    11111  22689999999998753311   12222221        2364 8999


Q ss_pred             eCCCCCCCCcccccHHHHHHHHHhcC-----------------CCcEEEeeccCCCC-HHHHHHHHHHH
Q 028647          125 NKIDVDGGNSRVVSEKKARAWCASKG-----------------NIPYFETSAKEGIN-VEEAFQCIAKN  175 (206)
Q Consensus       125 nK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~S~~~~~~-i~~l~~~l~~~  175 (206)
                      ||.|.......  ...    ....++                 ..+...+|+..|.| +.+|++++.+.
T Consensus       248 NK~D~~~~~g~--~l~----~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          248 TKLDGHAKGGG--ALS----AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ECTTSCCCCTH--HHH----HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             eCCccccchHH--HHH----HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99998643211  111    112222                 12234578888988 99999988766

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.06  E-value=1.4e-11  Score=95.28  Aligned_cols=135  Identities=13%  Similarity=0.133  Sum_probs=74.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc----chh--
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----LGV--   75 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~--   75 (206)
                      .+|+++|.+|+|||||+|+|++....       ....+.++  .....+.+.+.   +.++||||......    ...  
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999999875321       12222222  22333444433   67999999432211    111  


Q ss_pred             --hh--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647           76 --AF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN  151 (206)
Q Consensus        76 --~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                        ..  ....+.++++++.........+..     +..+.   ..+.|+++++||.|..+.   .........+.+.++ 
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~---~~~~~~~~v~nk~d~~~~---~~~~~~~~~~~~~~g-  303 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVS---GGRRAFTCHFSNRLTIHR---TKLEKADELYKNHAG-  303 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEE---SSSEEEEEEECTTSCEEE---EEHHHHHHHHHHHBT-
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE-----EEEec---CCCceEEEEecCcccccc---ccHHHHHHHHHHHhC-
Confidence              11  255788899998742211111100     11111   126899999999998763   333444444445555 


Q ss_pred             CcEEEeecc
Q 028647          152 IPYFETSAK  160 (206)
Q Consensus       152 ~~~~~~S~~  160 (206)
                      ..+.+.++.
T Consensus       304 ~~l~p~~~~  312 (368)
T 3h2y_A          304 DLLSPPTPE  312 (368)
T ss_dssp             TTBCSSCHH
T ss_pred             CccCCCchh
Confidence            445555543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.04  E-value=7.2e-10  Score=85.76  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=72.0

Q ss_pred             ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-ccccHHHHHH
Q 028647           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVSEKKARA  144 (206)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~  144 (206)
                      ..+.|.+...++.+.+|++++|+|+.++.     ..|...+.....     +.|+++|+||+|+.+... .....+....
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~~~~~~~~~~~l~~  124 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPKSVKHDKVKHWMRY  124 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence            35778888889999999999999999864     344444444433     789999999999976421 1112223333


Q ss_pred             HHHhcCC--CcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          145 WCASKGN--IPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       145 ~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      +....+.  ..++.+||++|.|++++++.|.+..
T Consensus       125 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            3455552  2799999999999999999997654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.03  E-value=4.1e-09  Score=82.36  Aligned_cols=162  Identities=14%  Similarity=0.177  Sum_probs=87.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc-ceeE--EEEEEEeCCeEEEEEEEeCCChhhhccchhhh-----hc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----YR   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   79 (206)
                      ...++++|++|||||||+|.+.+-..+....... +.+.  ...... ....-.+.++|++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            4579999999999999999998743221111100 0000  001111 1111147899999853221112222     23


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC---------CCCcccccHHHHHHHHH---
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD---------GGNSRVVSEKKARAWCA---  147 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~---------~~~~~~~~~~~~~~~~~---  147 (206)
                      ..+..++ ++...+.. . -..+...+...       +.|+++|.||.|+.         +...+....+.++++..   
T Consensus       148 ~~~~~~~-lS~G~~~k-q-rv~la~aL~~~-------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l  217 (413)
T 1tq4_A          148 EYDFFII-ISATRFKK-N-DIDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  217 (413)
T ss_dssp             GCSEEEE-EESSCCCH-H-HHHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccH-H-HHHHHHHHHhc-------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            3455555 77753211 1 11222222221       67999999999864         11112233344444431   


Q ss_pred             -h--cCCCcEEEeec--cCCCCHHHHHHHHHHHHHhcC
Q 028647          148 -S--KGNIPYFETSA--KEGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       148 -~--~~~~~~~~~S~--~~~~~i~~l~~~l~~~~~~~~  180 (206)
                       .  .+...++.+|+  .++.|++++.+.+.+.+.+.+
T Consensus       218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence             2  22346888999  566679999999988875544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.95  E-value=1.3e-09  Score=84.43  Aligned_cols=101  Identities=17%  Similarity=0.188  Sum_probs=71.4

Q ss_pred             ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-ccccHHHHHH
Q 028647           66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVSEKKARA  144 (206)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~  144 (206)
                      .++.|.+...+++..++++++|+|+.++.+     .|...+...+.     +.|+++|+||+|+.+... .....+...+
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~  126 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPRSVKYPKLLRWMRR  126 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence            477888888888899999999999998763     23333333332     679999999999976421 1122223333


Q ss_pred             HHHhcCC--CcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          145 WCASKGN--IPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       145 ~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      +....+.  ..++.+||++|.|++++++.+.+..
T Consensus       127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3455552  3689999999999999999997765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.89  E-value=2.7e-09  Score=79.63  Aligned_cols=101  Identities=15%  Similarity=0.103  Sum_probs=69.2

Q ss_pred             EEeCCChh-hhccchhhhhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc
Q 028647           61 IWDTAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV  137 (206)
Q Consensus        61 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  137 (206)
                      +-..||+. .........+..+|++++|+|+.+|.+...  +.++       ..     ++|.++|+||+|+.+.    .
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l~-----~kp~ilVlNK~DL~~~----~   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------LK-----NKPRIMLLNKADKADA----A   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------CS-----SSCEEEEEECGGGSCH----H
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------HC-----CCCEEEEEECcccCCH----H
Confidence            34578875 455667778899999999999999876542  2222       11     7899999999999752    1


Q ss_pred             cHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          138 SEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ..+...++....+ .+++.+|+.++.|++++++.+.+.+..
T Consensus        67 ~~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           67 VTQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            1223333444444 689999999999999999988877653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.77  E-value=1.6e-08  Score=79.49  Aligned_cols=140  Identities=16%  Similarity=0.132  Sum_probs=75.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc------CCCC----CCCCCc-----------cceeEEEEEEEeC------------
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN------KKFS----NQYKAT-----------IGADFLTKEVQFE------------   53 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~------~~~~----~~~~~~-----------~~~~~~~~~~~~~------------   53 (206)
                      ++..|+++|++|+||||++..|..      .++.    +.+.+.           .+...+......+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998863      1110    011110           0111111000000            


Q ss_pred             -CeEEEEEEEeCCChhhhccc----hh--hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647           54 -DRLFTLQIWDTAGQERFQSL----GV--AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK  126 (206)
Q Consensus        54 -~~~~~~~i~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  126 (206)
                       ...+.+.|+||+|.......    ..  ..+..+|.+++|+|+.......   .....+...       -.+..+|+||
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~-------~~i~gVIlTK  248 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA-------TPIGSIIVTK  248 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS-------CTTEEEEEEC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh-------CCCeEEEEEC
Confidence             01146789999994322111    11  2234589999999998653322   222333221       2256799999


Q ss_pred             CCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647          127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus       127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      .|....      ...+..+....+ .|+.+++.  |+++
T Consensus       249 lD~~~~------gG~~ls~~~~~g-~PI~fig~--Ge~v  278 (443)
T 3dm5_A          249 LDGSAK------GGGALSAVAATG-APIKFIGT--GEKI  278 (443)
T ss_dssp             CSSCSS------HHHHHHHHHTTC-CCEEEEEC--SSST
T ss_pred             CCCccc------ccHHHHHHHHHC-CCEEEEEc--CCCh
Confidence            997543      223334444554 78887775  4443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.60  E-value=4.3e-08  Score=73.09  Aligned_cols=57  Identities=25%  Similarity=0.430  Sum_probs=35.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ...++++++|.||+|||||+|+|.+.... ....+.+|...  ..+....   .+.++||||.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCc
Confidence            45689999999999999999999987633 22233333222  2222332   4689999995

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.55  E-value=4e-08  Score=77.19  Aligned_cols=90  Identities=18%  Similarity=0.060  Sum_probs=51.3

Q ss_pred             EEEEEEeCCChhh--hcc----chhh--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           57 FTLQIWDTAGQER--FQS----LGVA--FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        57 ~~~~i~D~~g~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                      +.+.++||||...  ...    ....  .....+.+++|+|+........   ....+...       -.+..||+||.|
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~-------~~~~gVIlTKlD  249 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA-------SPIGSVIITKMD  249 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH-------CSSEEEEEECGG
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc-------cCCcEEEEeccc
Confidence            4577999999533  111    1111  1224689999999986533222   22333222       235789999999


Q ss_pred             CCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647          129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      ....      ......+....+ .|+.+++.  |+++
T Consensus       250 ~~a~------~G~als~~~~~g-~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          250 GTAK------GGGALSAVVATG-ATIKFIGT--GEKI  277 (433)
T ss_dssp             GCSC------HHHHHHHHHHHT-CEEEEEEC--CSSS
T ss_pred             cccc------chHHHHHHHHHC-CCEEEEEC--CCCh
Confidence            6532      223334444454 78888776  5544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.51  E-value=4.5e-08  Score=72.23  Aligned_cols=56  Identities=27%  Similarity=0.371  Sum_probs=34.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (206)
                      ++++++|.+|+|||||+|+|.+..... ..++.+.+.....+....   .+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence            589999999999999999999876432 122222222222222222   46899999954

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.46  E-value=1.4e-07  Score=76.83  Aligned_cols=64  Identities=25%  Similarity=0.255  Sum_probs=38.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEe-CCeEEEEEEEeCCChh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI---GADFLTKEVQF-EDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~i~D~~g~~   68 (206)
                      ..+..+|+|+|.||+|||||+|+|++.........++   +.........+ ......+.++||||..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            4567899999999999999999999876321111111   11111111111 1122457899999954

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.45  E-value=7.2e-07  Score=70.32  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+..|+++|++|+||||+++.|..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.43  E-value=6.9e-07  Score=67.06  Aligned_cols=91  Identities=20%  Similarity=0.104  Sum_probs=53.4

Q ss_pred             EEEEEEeCCChhh--hcc-chh-----hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q 028647           57 FTLQIWDTAGQER--FQS-LGV-----AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKI  127 (206)
Q Consensus        57 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~  127 (206)
                      +.+.++||||...  ... ...     ..+..+|.+++|+|+.....   .......+..        ..| ..+|+||.
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~--------~~~i~gvVlnk~  249 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ--------ASKIGTIIITKM  249 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH--------TCTTEEEEEECG
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh--------hCCCCEEEEeCC
Confidence            4578999999655  221 111     13446899999999875322   2222222221        235 67899999


Q ss_pred             CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647          128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      |....      ......+....+ .|+.+++  .|+++++
T Consensus       250 D~~~~------~g~~~~~~~~~~-~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          250 DGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDE  280 (297)
T ss_dssp             GGCTT------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred             CCCcc------hHHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence            96432      223444555565 7887776  4555554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.37  E-value=3.6e-07  Score=68.73  Aligned_cols=92  Identities=13%  Similarity=0.049  Sum_probs=58.8

Q ss_pred             ccchhhhhccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647           71 QSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK  149 (206)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (206)
                      ....+..+.++|.+++|+|+.+|.. ...+.+++....    ..   ++|.++|+||+|+.+........+...++....
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~---~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~  149 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----AN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI  149 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HC---CCCEEEEEECCccCchhhhHHHHHHHHHHHHhC
Confidence            3444557889999999999997754 333333332221    11   789999999999986511001123344444445


Q ss_pred             CCCcEEEeeccCCCCHHHHHH
Q 028647          150 GNIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~l~~  170 (206)
                      + .+++.+|+.++.|+++|++
T Consensus       150 g-~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          150 G-YDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             T-CCEEECCHHHHTTCTTTGG
T ss_pred             C-CeEEEEecCCCCCHHHHHh
Confidence            5 7899999999888776543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.35  E-value=6.6e-07  Score=65.95  Aligned_cols=93  Identities=15%  Similarity=0.029  Sum_probs=60.8

Q ss_pred             CCChhh-hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH
Q 028647           64 TAGQER-FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA  142 (206)
Q Consensus        64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  142 (206)
                      .|||.. ........+.++|++++|+|+.+|.+....     .+    . . . ++|.++|+||+|+.+.   . ..+..
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l----~-l-l-~k~~iivlNK~DL~~~---~-~~~~~   67 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GV----D-F-S-RKETIILLNKVDIADE---K-TTKKW   67 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TS----C-C-T-TSEEEEEEECGGGSCH---H-HHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HH----H-h-c-CCCcEEEEECccCCCH---H-HHHHH
Confidence            466542 334567778999999999999988664321     11    1 1 1 6799999999999763   1 12233


Q ss_pred             HHHHHhcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647          143 RAWCASKGNIPYFETSAKEGINVEEAFQCIAK  174 (206)
Q Consensus       143 ~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  174 (206)
                      .++....+ .++ .+|+.++.|++++++.+.+
T Consensus        68 ~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           68 VEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence            33444444 677 9999999999998877654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.33  E-value=5.3e-07  Score=74.19  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++|+|+.|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.20  E-value=5.4e-06  Score=63.01  Aligned_cols=90  Identities=14%  Similarity=0.094  Sum_probs=49.0

Q ss_pred             EEEEeCCChhhhccchhh------hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           59 LQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      +.++|++|..........      ..-..|-.++++|+....   .+...+..+....      + ..++++||.|-...
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~------~-it~iilTKlD~~a~  283 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV------K-IDGIILTKLDADAR  283 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS------C-CCEEEEECGGGCSC
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc------C-CCEEEEeCcCCccc
Confidence            557999995332221111      112478899999986542   2223333333221      1 34788999995322


Q ss_pred             CcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647          133 NSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                            .-.........+ .|+.+++  .|+++++
T Consensus       284 ------~G~~l~~~~~~~-~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 ------GGAALSISYVID-APILFVG--VGQGYDD  309 (328)
T ss_dssp             ------CHHHHHHHHHHT-CCEEEEE--CSSSTTC
T ss_pred             ------hhHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence                  222334455555 7888877  5555543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.13  E-value=1.4e-05  Score=61.38  Aligned_cols=86  Identities=10%  Similarity=0.032  Sum_probs=53.8

Q ss_pred             hhhccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647           76 AFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ..+.++|.+++|.+. .|.. ...+.+++......       ++|.++|+||+|+.+.... ...+.........+ .++
T Consensus       126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G-~~v  195 (358)
T 2rcn_A          126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIG-YRV  195 (358)
T ss_dssp             EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTT-CCE
T ss_pred             HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchhH-HHHHHHHHHHHhCC-CcE
Confidence            346889999988665 4543 33344443322222       7788999999999864110 01122222333444 789


Q ss_pred             EEeeccCCCCHHHHHHH
Q 028647          155 FETSAKEGINVEEAFQC  171 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~  171 (206)
                      +.+|+.++.|++++...
T Consensus       196 ~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          196 LMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             EECBTTTTBTHHHHHHH
T ss_pred             EEEecCCCcCHHHHHHh
Confidence            99999999999987654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.07  E-value=7.1e-05  Score=59.07  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=23.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+..-|.|+|++++|||||+|.|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            456788999999999999999999863

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.94  E-value=0.0002  Score=56.46  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~   29 (206)
                      .++..|+++|.+|+||||+...|.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345788999999999999998876

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.83  E-value=1.5e-06  Score=69.42  Aligned_cols=100  Identities=10%  Similarity=0.005  Sum_probs=54.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--hccch--------h
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLG--------V   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~   75 (206)
                      ...+.|+++|.+||||||+.++|........ ..+.............+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999875421100 01100000000000011112235788888632  22222        4


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHH
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFL  107 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  107 (206)
                      .++...++.++|+|.++. +.+....|...+.
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~  146 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGE  146 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence            455567888999999986 3444455544443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.68  E-value=2.3e-05  Score=54.25  Aligned_cols=23  Identities=48%  Similarity=0.920  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++++++|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.62  E-value=3.9e-05  Score=52.70  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      |..+......|+++|++||||||+.+.|..
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            444444556799999999999999998864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.58  E-value=3.8e-05  Score=53.15  Aligned_cols=22  Identities=32%  Similarity=0.739  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.53  E-value=4.9e-05  Score=53.49  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.46  E-value=7e-05  Score=58.80  Aligned_cols=85  Identities=20%  Similarity=0.124  Sum_probs=45.3

Q ss_pred             EEEEEEeCCChhhhccchh------hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      +.+.|+||||.........      ..+-.+|.+++|+|+....   ........+....      + ..-+|+||.|-.
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l------~-i~GVIlTKlD~~  250 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV------G-VTGLVLTKLDGD  250 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT------C-CCEEEEESGGGC
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC------C-ceEEEEeCcCCc
Confidence            4578999999543321111      1123589999999986432   2222223332211      1 246789999964


Q ss_pred             CCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647          131 GGNSRVVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                      ..      ......+....+ .|+.++.
T Consensus       251 ~~------~g~alsi~~~~g-~PI~flg  271 (425)
T 2ffh_A          251 AR------GGAALSARHVTG-KPIYFAG  271 (425)
T ss_dssp             SS------CHHHHHHHHHHC-CCEEEEE
T ss_pred             cc------HHHHHHHHHHHC-CCEEEEe
Confidence            32      112333444554 6666655

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.46  E-value=6.9e-05  Score=52.75  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999998764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.42  E-value=1.7e-05  Score=55.19  Aligned_cols=21  Identities=33%  Similarity=0.725  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.41  E-value=8.8e-05  Score=52.53  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.41  E-value=9.3e-05  Score=51.48  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++++|++||||||+++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.40  E-value=7.7e-05  Score=51.17  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028647           10 KVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~   29 (206)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            57899999999999999654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.40  E-value=0.00036  Score=52.38  Aligned_cols=20  Identities=40%  Similarity=0.718  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028647           10 KVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~   29 (206)
                      .++++|++|+|||||+|.|.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999998

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.40  E-value=8.7e-05  Score=52.52  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.39  E-value=4.9e-05  Score=57.11  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.++++|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            368999999999999999998643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.39  E-value=9.5e-05  Score=52.91  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      --++|+|++|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999988643

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.38  E-value=9.9e-05  Score=51.81  Aligned_cols=23  Identities=26%  Similarity=0.678  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --|+|+|++|+|||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35789999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.37  E-value=0.00012  Score=51.78  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=23.9

Q ss_pred             CCcccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      |.+.......|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            334344567899999999999999998875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.37  E-value=9.8e-05  Score=52.76  Aligned_cols=23  Identities=39%  Similarity=0.735  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++|+|++|||||||++.|.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35799999999999999998864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.37  E-value=0.00011  Score=52.01  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=21.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+...|+|+|++|||||||++.|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.35  E-value=0.00011  Score=52.03  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      --|+|+|++||||||+++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            458999999999999999998653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.31  E-value=0.00015  Score=50.84  Aligned_cols=30  Identities=17%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.....+..|+|+|++||||||+.+.|...
T Consensus         2 ~~~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            2 GHEAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             ----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            344556688999999999999999998865

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.31  E-value=0.00016  Score=49.67  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5689999999999999999986

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.30  E-value=0.00014  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|+++|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988763

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.28  E-value=0.00015  Score=51.19  Aligned_cols=24  Identities=29%  Similarity=0.643  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-|+|+|++||||||+.+.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999998754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.28  E-value=0.00015  Score=51.30  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+++|+|||||+|...+|...
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.27  E-value=0.00015  Score=51.50  Aligned_cols=22  Identities=23%  Similarity=0.605  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.27  E-value=0.00014  Score=52.59  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4799999999999999988864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.27  E-value=0.00015  Score=50.98  Aligned_cols=25  Identities=28%  Similarity=0.472  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ...|+++|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3568999999999999999988654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.26  E-value=0.00016  Score=51.38  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.26  E-value=0.00017  Score=51.62  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.26  E-value=0.00017  Score=49.14  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHH
Q 028647            9 LKVIILGDSGVGKTSLMNQY   28 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l   28 (206)
                      +.|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.25  E-value=0.00017  Score=48.81  Aligned_cols=24  Identities=33%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999988754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.25  E-value=0.00016  Score=50.22  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++++|++||||||+++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.24  E-value=0.00018  Score=50.58  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.|+|+|++||||||+++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.23  E-value=0.00019  Score=48.87  Aligned_cols=23  Identities=13%  Similarity=0.182  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|+|.|++||||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.22  E-value=0.00019  Score=52.19  Aligned_cols=22  Identities=36%  Similarity=0.705  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 028647            8 LLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~   29 (206)
                      +..|+|+|++||||||+++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999988

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.22  E-value=0.00022  Score=51.78  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=22.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+++.|+|.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.21  E-value=0.00027  Score=48.90  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998874

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.21  E-value=0.00018  Score=51.64  Aligned_cols=22  Identities=36%  Similarity=0.412  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.20  E-value=0.00021  Score=54.82  Aligned_cols=24  Identities=42%  Similarity=0.595  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKF   33 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            579999999999999999997543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.19  E-value=0.0002  Score=49.94  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5799999999999999988753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.19  E-value=0.00021  Score=51.81  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.00018  Score=50.55  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+|+|++||||||+.+.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.17  E-value=0.00023  Score=50.80  Aligned_cols=24  Identities=17%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.+.|+|+|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.16  E-value=0.0003  Score=49.60  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.15  E-value=0.00023  Score=52.39  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.15  E-value=0.00027  Score=49.09  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.15  E-value=0.00024  Score=49.99  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.15  E-value=0.00023  Score=52.73  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.15  E-value=0.00026  Score=49.61  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.15  E-value=0.00024  Score=50.58  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999998864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.14  E-value=0.0051  Score=43.41  Aligned_cols=65  Identities=22%  Similarity=0.106  Sum_probs=43.8

Q ss_pred             EEEEEEeCCCh-hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           57 FTLQIWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        57 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      +.+.++|+|+. ..  ......+..+|.+++++..+ ..+.......+..+....      +.++.+|+|+.|..
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~------~~~~~vv~N~~~~~  133 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG------NNRFRILLTIIPPY  133 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC------SSSEEEEECSBCCT
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc------CCCEEEEEEecCCc
Confidence            45789999986 32  33455677899999999775 444555555555544321      45688999999854

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.14  E-value=0.00024  Score=51.45  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.13  E-value=0.00025  Score=52.28  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.13  E-value=0.00025  Score=52.15  Aligned_cols=22  Identities=18%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      =.++|+|++|||||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3589999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=0.0003  Score=49.37  Aligned_cols=23  Identities=26%  Similarity=0.615  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.|+++|++||||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.12  E-value=0.00025  Score=50.34  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.12  E-value=0.0003  Score=49.41  Aligned_cols=25  Identities=24%  Similarity=0.512  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999998875

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.12  E-value=0.00029  Score=48.45  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-++++|++|||||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.12  E-value=0.00029  Score=48.80  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....|+++|++||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999988764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.12  E-value=0.00033  Score=48.62  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.11  E-value=0.00028  Score=48.38  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998763

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.11  E-value=0.00026  Score=51.94  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988643

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.11  E-value=0.00033  Score=48.66  Aligned_cols=23  Identities=35%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999988864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.11  E-value=0.00034  Score=49.15  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +...|+++|++||||||+.+.|...
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999888753

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.11  E-value=0.0003  Score=48.77  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.11  E-value=0.00035  Score=52.84  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=21.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++-|+|+|++|||||||++.|..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999988764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.10  E-value=0.0003  Score=51.10  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999998864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.10  E-value=0.00028  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988643

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.10  E-value=0.00029  Score=52.83  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      =.++|+|++|+|||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3689999999999999998875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.09  E-value=0.00034  Score=52.74  Aligned_cols=27  Identities=19%  Similarity=0.219  Sum_probs=22.7

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .....-|+|+|++|||||||++.|.+-
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            345678999999999999999988753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.09  E-value=0.00028  Score=51.88  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999988864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.09  E-value=0.0003  Score=51.22  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.09  E-value=0.00023  Score=50.47  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.08  E-value=0.00029  Score=51.12  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.08  E-value=0.00028  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.07  E-value=0.00032  Score=51.21  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.07  E-value=0.00031  Score=51.26  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.07  E-value=0.00031  Score=51.48  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.06  E-value=0.00032  Score=49.93  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.+.|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.06  E-value=0.00039  Score=48.99  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|+|.|++||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            67999999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.06  E-value=0.00044  Score=47.94  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|++.|++||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.06  E-value=0.0005  Score=48.46  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=22.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+...|+|+|++||||||+.+.|...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.05  E-value=0.00038  Score=50.55  Aligned_cols=24  Identities=13%  Similarity=0.315  Sum_probs=21.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +...|+|+|+.|||||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.05  E-value=0.00033  Score=50.19  Aligned_cols=24  Identities=29%  Similarity=0.634  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +...|+|.|++||||||+.+.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.05  E-value=0.00035  Score=51.52  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.05  E-value=0.00046  Score=48.44  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .....|+|.|++||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.04  E-value=0.0002  Score=51.49  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=15.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh-cC
Q 028647            9 LKVIILGDSGVGKTSLMNQYV-NK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~-~~   31 (206)
                      --++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999998 54

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.04  E-value=0.0004  Score=47.16  Aligned_cols=22  Identities=14%  Similarity=0.318  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.04  E-value=0.00036  Score=51.22  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5799999999999999998864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.03  E-value=0.00034  Score=51.72  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|+.|||||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.03  E-value=0.00049  Score=51.34  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...+..|+|.|++|||||||.+.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999988754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.03  E-value=0.0003  Score=50.26  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.02  E-value=0.00039  Score=51.61  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.02  E-value=0.00036  Score=51.05  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.01  E-value=0.00033  Score=52.57  Aligned_cols=23  Identities=39%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|+|||||+|.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.01  E-value=0.00044  Score=47.76  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.00  E-value=0.00058  Score=47.27  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+...|+++|.+||||||+.+.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3457799999999999999998865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.00  E-value=0.00038  Score=51.29  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.99  E-value=0.00046  Score=51.42  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.-|++.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999999875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.98  E-value=0.00047  Score=48.36  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+|.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.98  E-value=0.00039  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++|+|++|||||||++.+...
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999999863

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.98  E-value=0.00047  Score=49.35  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.97  E-value=0.00044  Score=47.37  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.96  E-value=0.0013  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.96  E-value=0.0002  Score=49.13  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++|||||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.96  E-value=0.00064  Score=48.47  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .--|+|+|+|||||+|....|...
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345778999999999999888753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.94  E-value=0.0005  Score=49.51  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=21.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...+.|+|+|++||||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.94  E-value=0.00051  Score=50.52  Aligned_cols=23  Identities=48%  Similarity=0.670  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.94  E-value=0.00053  Score=46.84  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...++++|++|||||||+.+|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.94  E-value=0.00055  Score=48.13  Aligned_cols=25  Identities=40%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .....|+|+|++||||||+++.|..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.93  E-value=0.00022  Score=49.74  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.93  E-value=0.00049  Score=48.63  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.93  E-value=0.035  Score=43.88  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~   29 (206)
                      ..+..-|.|+|+.++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            5678889999999999999999654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.92  E-value=0.00041  Score=48.42  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ....|++.|++||||||+.+.|..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.91  E-value=0.00041  Score=50.66  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+..|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999998865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.90  E-value=0.00058  Score=47.39  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.89  E-value=0.00067  Score=51.06  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .....|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999988763

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.88  E-value=0.00068  Score=49.72  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.87  E-value=0.00056  Score=52.55  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++|+|++|||||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            789999999999999998865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.87  E-value=0.00056  Score=52.49  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999988743

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.86  E-value=0.00047  Score=53.15  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.86  E-value=0.00059  Score=51.28  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..-.++++|++||||||+++.+.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            345789999999999999999863

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.86  E-value=0.00077  Score=47.91  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.85  E-value=0.00063  Score=52.30  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|||||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            3689999999999999988864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.85  E-value=0.00063  Score=49.70  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            579999999999999998864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.85  E-value=0.00074  Score=49.24  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=21.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++.|+|.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999988865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.85  E-value=0.00043  Score=47.64  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=16.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.84  E-value=0.00052  Score=45.93  Aligned_cols=22  Identities=27%  Similarity=0.679  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|+|||||++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.84  E-value=0.00063  Score=50.32  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998863

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.84  E-value=0.00039  Score=52.28  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|+.|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999988753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.84  E-value=0.00066  Score=46.69  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|++||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999998874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.83  E-value=0.00059  Score=50.92  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.83  E-value=0.00082  Score=49.90  Aligned_cols=25  Identities=32%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++.|+|.|++||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998863

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.82  E-value=0.0035  Score=47.83  Aligned_cols=20  Identities=20%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.82  E-value=0.00058  Score=47.14  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999988865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.82  E-value=0.00067  Score=49.51  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 028647            9 LKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~   29 (206)
                      ..|+|+|++||||||+.+.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999887

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.82  E-value=0.00068  Score=51.99  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999988643

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.81  E-value=0.0007  Score=50.82  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.-.++++|+.||||||+++.+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345789999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.81  E-value=0.0007  Score=52.01  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            3689999999999999998864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.79  E-value=0.00075  Score=51.91  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            3689999999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.79  E-value=0.00095  Score=45.86  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.79  E-value=0.00075  Score=52.19  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999988643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.76  E-value=0.00095  Score=45.32  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -+|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.76  E-value=0.0008  Score=52.05  Aligned_cols=22  Identities=18%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      =.++|+|++||||||+++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.76  E-value=0.00074  Score=51.35  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++|||||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.76  E-value=0.00081  Score=48.98  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.76  E-value=0.00087  Score=45.64  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.75  E-value=0.0008  Score=51.97  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999988643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.75  E-value=0.00082  Score=51.87  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|||||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4689999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.75  E-value=0.00098  Score=45.82  Aligned_cols=24  Identities=25%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.75  E-value=0.00091  Score=48.20  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++.|++.|++||||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.74  E-value=0.00078  Score=51.90  Aligned_cols=23  Identities=30%  Similarity=0.679  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++|+|++|||||||++.+.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.74  E-value=0.0003  Score=49.80  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.73  E-value=0.00097  Score=47.87  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .--..++++|+|+|||||||+...|..
T Consensus         4 ~~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            4 HHHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccccceeeECCCCCCHHHHHHHHHH
Confidence            334568999999999999999998864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.72  E-value=0.0013  Score=46.03  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+.|+++|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4688999999999999999988753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.68  E-value=0.00094  Score=52.40  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++||||||+++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.66  E-value=0.001  Score=47.76  Aligned_cols=26  Identities=31%  Similarity=0.553  Sum_probs=22.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+..-|+|.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567999999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.64  E-value=0.0014  Score=47.08  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...-|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.63  E-value=0.00067  Score=51.89  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|||||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            4689999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.63  E-value=0.0011  Score=47.23  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.62  E-value=0.0014  Score=46.33  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +...|+++|.+||||||+.+.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.62  E-value=0.0012  Score=50.80  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.-.++++|+.||||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            345789999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.61  E-value=0.0011  Score=50.43  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+++.|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.61  E-value=0.0011  Score=51.51  Aligned_cols=21  Identities=33%  Similarity=0.782  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++++|++|||||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            478999999999999998875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.61  E-value=0.0012  Score=48.83  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999998864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.60  E-value=0.0052  Score=40.57  Aligned_cols=24  Identities=13%  Similarity=0.263  Sum_probs=20.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            356999999999999999877653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.58  E-value=0.0012  Score=53.27  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.++|+|++||||||+++.+.+--
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998643

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.56  E-value=0.0013  Score=47.93  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.|+++|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.55  E-value=0.0011  Score=45.35  Aligned_cols=24  Identities=42%  Similarity=0.620  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999888753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.55  E-value=0.0013  Score=52.50  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++|+|+.|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            45789999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.54  E-value=0.0016  Score=48.61  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.51  E-value=0.00066  Score=52.07  Aligned_cols=23  Identities=39%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999988643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.48  E-value=0.0015  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++|+|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.47  E-value=0.0018  Score=47.23  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +..+++.|++|+||||+++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.47  E-value=0.0018  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.+++.|++|+||||+++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.46  E-value=0.011  Score=44.78  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....+++.|++|+|||++++.+...
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3457999999999999999998654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.45  E-value=0.0018  Score=46.67  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .....|+|+|++||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0014  Score=52.07  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++|+|+.|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999998753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.44  E-value=0.0018  Score=45.84  Aligned_cols=21  Identities=29%  Similarity=0.180  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999986

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.43  E-value=0.0021  Score=45.02  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999888753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.42  E-value=0.0019  Score=49.47  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.41  E-value=0.0019  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999998863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.37  E-value=0.0021  Score=44.13  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999998754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.36  E-value=0.002  Score=48.70  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --++|+|+.|||||||++.+.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            45689999999999999999865

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.35  E-value=0.002  Score=49.84  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999999885

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.35  E-value=0.0018  Score=45.54  Aligned_cols=21  Identities=14%  Similarity=0.387  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .+++.||||+||||++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.32  E-value=0.0032  Score=47.11  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-.+++.|++|+|||++++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            357999999999999999988753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.30  E-value=0.0026  Score=44.56  Aligned_cols=24  Identities=46%  Similarity=0.684  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ..|+|+|++|+|||||...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.28  E-value=0.0023  Score=47.75  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+.-+++.|+||+|||+|.+.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788899999999999988764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.24  E-value=0.0025  Score=50.85  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.24  E-value=0.0028  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999988743

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.23  E-value=0.0031  Score=44.22  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.20  E-value=0.0029  Score=45.10  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++|.|++|+||||+++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.20  E-value=0.0028  Score=50.07  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999988753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.19  E-value=0.0031  Score=45.91  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +..+++.|++|+|||++++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.18  E-value=0.0027  Score=51.54  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46999999999999999988743

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.17  E-value=0.0033  Score=41.60  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|++|+|||++.+.+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999988764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.17  E-value=0.0042  Score=45.62  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=22.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ......+++.|++|+|||++++.+...
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            345678999999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.16  E-value=0.0035  Score=49.21  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+.-|+++|++||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998763

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.16  E-value=0.0032  Score=46.82  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.-.+++.|++|+|||++++.+...
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3467999999999999999998763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.15  E-value=0.0029  Score=46.78  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.003  Score=51.99  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57999999999999999988643

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.012  Score=42.09  Aligned_cols=23  Identities=13%  Similarity=0.085  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +=|++-|+++.||++|++++++.
T Consensus        30 ilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           30 ILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             eEEEecCcccccHHHHHHHHhcc
Confidence            33444499999999999999976

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.15  E-value=0.0029  Score=51.89  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999999999988764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.14  E-value=0.003  Score=46.69  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....+++.|++|+|||++++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999998764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.13  E-value=0.0041  Score=47.00  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.13  E-value=0.0034  Score=41.88  Aligned_cols=19  Identities=37%  Similarity=0.786  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028647           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3799999999999998865

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.13  E-value=0.0023  Score=46.89  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+...|+|.|.+||||||+.+.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999888754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.12  E-value=0.0044  Score=46.49  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.-|+|+||+|||||||...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            456889999999999999998753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.11  E-value=0.0036  Score=46.79  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .....+++.|++|+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999986654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.11  E-value=0.0034  Score=46.93  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 028647            8 LLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~   29 (206)
                      .-.++++|++|+||||++..|.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999998875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.09  E-value=0.0034  Score=51.48  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999988764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.05  E-value=0.0043  Score=42.75  Aligned_cols=21  Identities=14%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+|.++||||||..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999854

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.05  E-value=0.0044  Score=46.53  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.-.|+++|++|+||||++..|..
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            345789999999999999988763

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.04  E-value=0.0036  Score=46.83  Aligned_cols=24  Identities=33%  Similarity=0.464  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-.+++.|++|+|||+|++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999998864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.02  E-value=0.003  Score=45.33  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=17.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..-|++.|++||||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.01  E-value=0.0046  Score=44.62  Aligned_cols=24  Identities=21%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.-|++.|..||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.00  E-value=0.0039  Score=51.29  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+-.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999988743

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.99  E-value=0.0041  Score=44.74  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -+++.|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.99  E-value=0.0039  Score=47.07  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+++.|++|+|||||++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.98  E-value=0.0038  Score=44.22  Aligned_cols=22  Identities=14%  Similarity=0.447  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.|++.|++||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999988865

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.98  E-value=0.0041  Score=47.29  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.96  E-value=0.0018  Score=48.23  Aligned_cols=23  Identities=17%  Similarity=0.392  Sum_probs=17.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.95  E-value=0.0033  Score=51.70  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.95  E-value=0.004  Score=50.50  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998743

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.91  E-value=0.006  Score=46.66  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+|+++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            46799999999999999987653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.90  E-value=0.0052  Score=46.16  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|+|+||+|||||||...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999999754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.89  E-value=0.0051  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.88  E-value=0.0045  Score=47.55  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.87  E-value=0.005  Score=47.45  Aligned_cols=19  Identities=32%  Similarity=0.615  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028647           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      .+|+|+.|||||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4699999999999999876

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.86  E-value=0.081  Score=39.70  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +++-|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999998754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.86  E-value=0.0067  Score=46.05  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|+|+|++|||||||...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.85  E-value=0.0053  Score=50.53  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.85  E-value=0.0029  Score=51.86  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5799999999999999877753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.83  E-value=0.0048  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --+.|+|++|+|||||+..+...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.83  E-value=0.0055  Score=47.20  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|.|++|+||||+++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.82  E-value=0.004  Score=50.65  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....|+++|++|||||||.+.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4567999999999999999988764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.82  E-value=0.0053  Score=45.74  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.81  E-value=0.0067  Score=41.43  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-|++.|++|+||||+...|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            468999999999999999988743

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.0054  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.674  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028647           11 VIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++++|+.|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.78  E-value=0.0039  Score=51.21  Aligned_cols=22  Identities=41%  Similarity=0.652  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999987753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.76  E-value=0.0055  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.76  E-value=0.0062  Score=46.01  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +...+++.|+||+|||+|++.+...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3467999999999999999998754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.74  E-value=0.0058  Score=46.22  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.-.|++.|+||+|||+|++.+...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            3457999999999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.68  E-value=0.0069  Score=42.98  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..-|++.|++||||||+++.|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.007  Score=47.64  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++-.|++.||||+|||+|++.+.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            4568999999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.0072  Score=47.50  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++--|++.||||+|||+|++.+.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999998864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.59  E-value=0.0079  Score=45.19  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988765

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.58  E-value=0.0062  Score=46.82  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-.++|.|++|+||||+++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988753

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.57  E-value=0.04  Score=38.32  Aligned_cols=83  Identities=11%  Similarity=-0.006  Sum_probs=51.8

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (206)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ......+..+..... . .++.++.+|+|+.|...     
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~-~-~~~~~~~vv~N~~~~~~-----  144 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQA-Y-SRKVEARFLITRKIEMA-----  144 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSC-G-GGCCEEEEEECSBCTTE-----
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHH-h-CCCCcEEEEEeccCCCc-----
Confidence            457899999865  344556677799999999876543  555555555543321 1 22567899999999432     


Q ss_pred             ccHHHHHHHHHhcC
Q 028647          137 VSEKKARAWCASKG  150 (206)
Q Consensus       137 ~~~~~~~~~~~~~~  150 (206)
                      ...++..++...++
T Consensus       145 ~~~~~~~~~l~~~~  158 (206)
T 4dzz_A          145 TMLNVLKESIKDTG  158 (206)
T ss_dssp             EEEHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHcC
Confidence            12334445555554

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.56  E-value=0.0074  Score=45.89  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+++.|++|+||||+++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.55  E-value=0.0069  Score=49.00  Aligned_cols=19  Identities=37%  Similarity=0.646  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028647           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      ++|+|++|||||||++.|+
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.0079  Score=47.39  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++-.|++.||||+|||+|++.+...
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999998864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.55  E-value=0.01  Score=42.44  Aligned_cols=25  Identities=20%  Similarity=0.221  Sum_probs=21.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ....-|++.|.+||||||+++.|..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457799999999999999998864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.54  E-value=0.0033  Score=46.04  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++.|++|+|||+|++.+...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34889999999999999998753

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.53  E-value=0.0095  Score=47.90  Aligned_cols=28  Identities=11%  Similarity=0.186  Sum_probs=23.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.+..+.|.++|.+||||||+.+.|...
T Consensus       391 ~~~~~~~I~l~GlsGsGKSTIa~~La~~  418 (511)
T 1g8f_A          391 RPKQGFSIVLGNSLTVSREQLSIALLST  418 (511)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccccceEEEecccCCCCHHHHHHHHHHH
Confidence            4456689999999999999999888754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.50  E-value=0.011  Score=48.43  Aligned_cols=26  Identities=12%  Similarity=0.178  Sum_probs=22.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+..+.|.+.|.+||||||+.+.|..
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~  418 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQV  418 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHH
Confidence            44568899999999999999988865

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.49  E-value=0.0083  Score=45.98  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.48  E-value=0.0077  Score=48.01  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+++++|+||+|||++++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-50
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	6e-49
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-47
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-45
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-45
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-44
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-44
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-43
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-42
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-41
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-41
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	9e-41
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-40
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-40
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-38
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-37
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-37
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-36
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-36
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-36
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-36
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-36
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	8e-36
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-35
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-35
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-33
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-33
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-33
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-33
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-32
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-32
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	8e-31
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-29
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-29
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	9e-29
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-28
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-27
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-27
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	7e-27
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-26
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-26
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-25
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-24
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	7e-24
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-23
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-22
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	5e-20
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	6e-20
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-19
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-19
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	6e-18
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-13
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	3e-12
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	3e-11
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	8e-11
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-09
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-09
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	6e-09
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	8e-09
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-08
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-08
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	6e-08
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	7e-07
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	4e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	7e-04
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	8e-04
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	0.002
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.003

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (401), Expect = 2e-50
 Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 8/172 (4%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAG
Sbjct: 1   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYD+   ++F N+  W +           D    +++GNK
Sbjct: 61  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNK 116

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
            D+    +RVV+  +  A  A +  IP+ E+SAK   NV E F  +AK   +
Sbjct: 117 SDM---ETRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  155 bits (393), Expect = 6e-49
 Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  A+YRGA   +LVYD+ + KSFDN+ NW              +   ++LGNK 
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKC 121

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           DV+          +     A    I + ETSAK  INVE AF  +A++   
Sbjct: 122 DVNDKRQVSKERGE---KLALDYGIKFMETSAKANINVENAFFTLARDIKA 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 7e-47
 Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 5   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    A     +    V++GNKI
Sbjct: 65  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGNKI 120

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D+     R    ++     +   ++ Y ETSAKE  NVE+ F  +A   + 
Sbjct: 121 DL---AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (368), Expect = 3e-45
 Identities = 90/175 (51%), Positives = 125/175 (71%), Gaps = 3/175 (1%)

Query: 5   RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LG
Sbjct: 63  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122

Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           NKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L +
Sbjct: 123 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  145 bits (367), Expect = 8e-45
 Identities = 59/178 (33%), Positives = 101/178 (56%), Gaps = 7/178 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E               +++GNK 
Sbjct: 66  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID----RYATSTVLKLLVGNK- 120

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185
                  + V E       A    +P+ ETSA +  NVE+AF  +A+   +S  ++ +
Sbjct: 121 --CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 176

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (363), Expect = 2e-44
 Identities = 63/178 (35%), Positives = 106/178 (59%), Gaps = 7/178 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 4   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK 
Sbjct: 64  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 119

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185
           D+    +    E +A A      N+ + ETSA +  NVEEAF+ I     +   +++I
Sbjct: 120 DLRHLRAVPTDEARAFAEK---NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  142 bits (359), Expect = 5e-44
 Identities = 55/171 (32%), Positives = 97/171 (56%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ER++++  A+YRGA   +L+YD+ + +SF+ + +W  +    +     DN   +++GNK 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS----WDNAQVLLVGNKC 120

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D++          +     A      +FE SAK+ INV++ F+ +     +
Sbjct: 121 DMEDERVV---SSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  141 bits (356), Expect = 2e-43
 Identities = 141/186 (75%), Positives = 159/186 (85%), Gaps = 5/186 (2%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKI
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY- 186
           D+    +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y 
Sbjct: 122 DL---ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 178

Query: 187 -LPDTI 191
             P+ I
Sbjct: 179 EFPEPI 184

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 1e-42
 Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 8/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAG
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF+S+  A+YR A   +L+YDV +  SFDN+  W  E    A      +   ++LGNK
Sbjct: 66  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA----QHDVALMLLGNK 121

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +D    + RVV  +      A +  +P+ ETSAK G+NV+ AF  IAK   +
Sbjct: 122 VDSA--HERVVKREDGEKL-AKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 2e-41
 Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 7/173 (4%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAG
Sbjct: 6   TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF++L  ++YRGA   +LVYDV    +F  L+NW        +    ++   +++GNK
Sbjct: 66  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN---ELETYCTRNDIVNMLVGNK 122

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           ID     +R V   +   + A K ++ + E SAK    V+ AF+ + +  +++
Sbjct: 123 IDK---ENREVDRNEGLKF-ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 3e-41
 Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  KKF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 4   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +           N   +++GNK 
Sbjct: 64  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT----NPNTVIILIGNKA 119

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           D++        E K     A +  + + E SAK G NVE+AF   AK
Sbjct: 120 DLEAQRDVTYEEAK---QFAEENGLLFLEASAKTGENVEDAFLEAAK 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 9e-41
 Identities = 73/185 (39%), Positives = 110/185 (59%), Gaps = 16/185 (8%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL----------F 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 5   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +       +  +N
Sbjct: 65  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCEN 121

Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
              V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE+A + +    +
Sbjct: 122 PDIVLIGNKADLP--DQREVNERQAREL-ADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

Query: 178 KSGEE 182
           K  E+
Sbjct: 179 KRMEQ 183

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 2e-40
 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 10/177 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ KKF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 5   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF+S+  ++YRGA   +LVYD+ S ++++ L NW  +           N   ++ GNK 
Sbjct: 65  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA----RMLASQNIVIILCGNK- 119

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL---KSGE 181
                ++         +  A +  + + ETSA  G NVEEAF   A+  L   +SGE
Sbjct: 120 --KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  133 bits (335), Expect = 2e-40
 Identities = 111/172 (64%), Positives = 141/172 (81%), Gaps = 2/172 (1%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  +  ++ T+Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FPFV+LGNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           ID +  + ++VSEK A+    S G+IP F TSAK  INV+ AF+ IA++AL+
Sbjct: 122 IDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-38
 Identities = 64/171 (37%), Positives = 99/171 (57%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    +S     N   +++GNK 
Sbjct: 63  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKS 118

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D++        E +     A +  + + ETSAK   NVEEAF   AK   +
Sbjct: 119 DLESRRDVKREEGE---AFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 5e-37
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D+
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDL 117

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
                +     +     A + N+ + ETSAK G NV++ F+ +A 
Sbjct: 118 ---ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 5e-37
 Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           ERF +LG  +YR ++  +LVYD+    SF  + NW +E          +     ++GNKI
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIVGNKI 118

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           D++      + E ++    A      ++ TSAK+   +EE F  + K  +++
Sbjct: 119 DLEKERHVSIQEAES---YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 167

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 2e-36
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  D     V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + V S  SF+N+       +           PF+++G +ID
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH----HCPKTPFLLVGTQID 118

Query: 129 VDGGNSRVVSEKK----------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +    S +    K          A         + Y E SA     ++  F      AL+
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

Query: 179 SGEEEE 184
             E ++
Sbjct: 179 PPEPKK 184

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  122 bits (307), Expect = 3e-36
 Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 4/168 (2%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAG
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           QERF SL   +YR A   ++VYDV   +SF    +W +E   Q       +    ++GNK
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNK 117

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           ID+          ++     A +  + +FETSAK G NV + F  I +
Sbjct: 118 IDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 5e-36
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDL 120

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           +       SE +     A +   P+ ETSAK    V+E F  I +
Sbjct: 121 ESEREVSSSEGR---ALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 6e-36
 Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 19/181 (10%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + + S  SF+N+       +    P    N P +++G K+D
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLD 120

Query: 129 VDGGNSRVVSEK------------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           +   + +   EK            +  A     G + Y E SA     ++  F    +  
Sbjct: 121 LR--DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

Query: 177 L 177
           L
Sbjct: 179 L 179

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 7e-36
 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQ
Sbjct: 9   MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQ 67

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E +  L    Y   D  ++ + V +  SF N+       L + +P    N PF+++G +I
Sbjct: 68  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQI 123

Query: 128 D----------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
           D          ++    + +  ++ +      G   Y E SA     ++  F       L
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  121 bits (305), Expect = 8e-36
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T   D   K+V  +     + I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 119

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           D++      V E K     A + N+ Y ETSAK   NV++ F  + +    
Sbjct: 120 DLEDKRQVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 39/177 (22%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++ +LGD+  GK+SL+++++   +         ++   KE+  + +   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     F   AD  + V+ +    SF  ++      L              ++G +  
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHG-QLSSLRGEGRGGLALALVGTQDR 117

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185
           +   + RVV + +ARA CA      Y+ET A  G+NV+  FQ +A+  +   +++++
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 2e-35
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 15/180 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++I+GD   GKT L+      +F   Y  T+  +    +++ + +   L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +  L    Y   D  ++ + ++S  S +N+       +    P    N P +++GNK D
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKD 117

Query: 129 VDGGN----------SRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +                 V  ++ R      G   Y E SAK    V E F+   + AL+
Sbjct: 118 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 7/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNK--- 120

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
               ++   + +     A   ++ + ETSAK  +NV E F  IAK   K+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 10/170 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 68  ERFQSLGV-AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           ERF+   V  +YR     V VYD+ +M SF +L  W EE          ++ P +++GNK
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNK 118

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIA 173
            D+   ++  V    A+ + A   ++P FETSAK   +  +VE  F  +A
Sbjct: 119 CDLR--SAIQVPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI   +  + V        L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETCLLDILDTAGQEE 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D 
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKCD- 119

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
               +    E +     A    IPY ETSAK    VE+AF  + +   +
Sbjct: 120 ---LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-33
 Identities = 52/169 (30%), Positives = 93/169 (55%), Gaps = 6/169 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + +      LVY + +  +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDL 120

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +  + RVV +++ +       N  + E+SAK  INV E F  + +   +
Sbjct: 121 E--DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (285), Expect = 5e-33
 Identities = 53/170 (31%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +                +  
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-------DIPTALVQNK 115

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +D  +   +  ++     A +  + ++ TS KE +NV E F+ +A+  L+
Sbjct: 116 IDLLDDSCIKNEE-AEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +++++G  GVGK++L  Q++   F   Y  TI  D  TK+   +DR   L I DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  +  +LV+ V    SF+ +  ++ + L      D D FP +++GNK D+
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADL 122

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
           D        E +     A +  + Y E SAK  +NV++AF  + +   K  E
Sbjct: 123 DHQRQVTQEEGQ---QLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 171

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 8/171 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E         P +    + GNK D
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCD 120

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           +      +  + K     A   +  + ETSAK  IN+ E F  I++  + S
Sbjct: 121 LTDVREVMERDAK---DYADSIHAIFVETSAKNAININELFIEISR-RIPS 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 4e-32
 Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++++G  GVGK++L  Q++   F + Y      D  TK    +     L I DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           E F ++   + R     +LV+ +N  +SF+ +     + L      D D+FP V++GNK 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKA 121

Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
           D++   S+    +   +   +  ++ YFE SAK  +NV+EAF+ + +   K  E+
Sbjct: 122 DLE---SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (272), Expect = 8e-31
 Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 16/181 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDS  GKT+L++ +    F   Y  T+  +  T   + + +   L +WDT+G  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSP 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            + ++    Y  +D  ++ +D++  ++ D++    +  + +  P    N   +++G K D
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSD 117

Query: 129 VDGG----------NSRVVSEKKARAWCASKGNIPYFETSAKEGIN-VEEAFQCIAKNAL 177
           +                 VS  +        G   Y E SA +  N V + F       +
Sbjct: 118 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

Query: 178 K 178
            
Sbjct: 178 N 178

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  106 bits (264), Expect = 6e-30
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       T            E +  +  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQD 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +++     + V D N  +  +         L +    D      V    +  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA--VLLVFANKQDL 113

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
            +  N+  +++K          N     T A  G  + E    ++  
Sbjct: 114 PNAMNAAEITDKLGLHS-LRHRNWYIQATCATSGDGLYEGLDWLSNQ 159

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 4e-29
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F  L   +Y  A C ++++DV S  ++ N+ NW  + +        +N P V+ GNK+D+
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDI 119

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
                +    K        K N+ Y++ SAK   N E+ F  +A+  + 
Sbjct: 120 -----KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 4e-29
 Identities = 54/170 (31%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD GVGK++L  Q+  K F   Y  TI  D   K  + +++   L + DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP +++ NK+D+
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANKVDL 121

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEG-INVEEAFQCIAKNALK 178
              + R V+  +     A+K NIPY ETSAK+  +NV++ F  + +   +
Sbjct: 122 M--HLRKVTRDQ-GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 9e-29
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 6/169 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+   +          + TLQI DT G  +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD-KSICTLQITDTTGSHQ 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
           F ++           +LVY + S +S + L        I     D ++ P +++GNK D 
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIY--EQICEIKGDVESIPIMLVGNKCDE 120

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
                   SE +     A      + ETSAK   NV+E FQ +     +
Sbjct: 121 SPSREVQSSEAE---ALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 166

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score =  103 bits (256), Expect = 1e-28
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G +      +      T+++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           RF+S+   + RG    V + D    +  +   N     L +         P +VLGNK D
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRD 115

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
           + G        +K          I  +  S KE  N++   Q + +++
Sbjct: 116 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  101 bits (251), Expect = 6e-28
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++  +        TI           E R F L IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    ++   D  + V D    +   +     +  L++           ++  NK D
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQD 114

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           + G  S    ++          +      SA  G ++      +  +
Sbjct: 115 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 161

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 8/170 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++ILG  G GKT+++ +    +     K TIG +  T   +       L +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKN----LKLNVWDLGGQT 72

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y      + V D          +      L +    +  +   +V  NK D
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQD 129

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
             G  S     K+         +     +SA +G  + E    +     +
Sbjct: 130 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  100 bits (248), Expect = 3e-27
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+++ +    +       T+G +  T   +         +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKN----VKFNVWDVGGQD 67

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + L   +Y G    + V D       D             +  +  +   ++  NK D
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE---LHRIINDREMRDAIILIFANKQD 124

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           +         ++K         N     + A  G  + E    +  N
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 7e-27
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+ I G +GVGK++L+ +++ K+F  +Y  T+ + +   +   +D + +++I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
                     R  +  VLVYD+    SF+ +   +           P N   +++GNK D
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI---KKPKNVTLILVGNKAD 117

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG-INVEEAFQCIAKNALK 178
           +D        E +     A++    ++E SA  G  N+ E F  + +   +
Sbjct: 118 LDHSRQVSTEEGE---KLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 98.5 bits (244), Expect = 1e-26
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  ++  S+    T G +  + + Q     F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQSQG----FKLNVWDIGGQR 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + +    +++   D  + V D    K F+       E L +         P ++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQD 128

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           +          +                 SA  G  V++    + KN
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.1 bits (240), Expect = 3e-26
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG    GKT+L++   N + +     T+   +     +          +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            + L   ++   +  V + D    + FD      +     A   +  + PFV+LGNKID 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDA 113

Query: 130 DGGNSRV-------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
               S         +           +  +  F  S        EAFQ +++
Sbjct: 114 PNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (233), Expect = 4e-25
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+ ILG   VGK+SL  Q+V  +F + Y  TI  +  TK +    + + LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE-NTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
            +      +    +  +LVY V S+KSF+ +     + L           P +++GNK D
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM---VGKVQIPIMLVGNKKD 120

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           +         E K     A   N  + E+SAKE     + F+ I   A K
Sbjct: 121 LHMERVISYEEGK---ALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 6e-24
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 8/170 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       T              +    Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +     +Y   D  + V D           +     L +    +      VV  NK D
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQD 117

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           ++   +                    F+TSA +G  ++EA + + +    
Sbjct: 118 MEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 7e-24
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +           +   +         +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
             +S    +Y   +  ++V D    +          + L      D      ++  NK D
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQD 127

Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           V    +     +  +               A  G  + +  + +   
Sbjct: 128 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 174

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (221), Expect = 2e-23
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 4/172 (2%)

Query: 7   TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           T  +V+++G+ GVGK++L N +     S      +  +   +     D      I     
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
           + + ++  +  +           V S+    +     E  +        ++ P +++GNK
Sbjct: 62  ENKGENEWLHDHCMQVGDA-YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
            D+       VSE +    CA   +  + ETSA    NV+E F+ I +    
Sbjct: 121 SDLVRCREVSVSEGR---ACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.1 bits (214), Expect = 2e-22
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 8/169 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L   +   +   +           + +  +    +L ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
            + L        D  V+VY V    SF       E  +        D+ P +++GNK D+
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSF---EKASELRVQLRRARQTDDVPIILVGNKSDL 117

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
                  V E +    CA   +  + ETSA    NV+  F+ + +    
Sbjct: 118 VRSREVSVDEGR---ACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 163

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.5 bits (200), Expect = 5e-20
 Identities = 25/202 (12%), Positives = 59/202 (29%), Gaps = 43/202 (21%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+++LG    GK++++ Q      +       G      E  F  +    +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTG----IVETHFTFKDLHFKMFDVGGQR 53

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDN-------LNNWREEFLIQASPSDPDNFPFV 121
             +   +  + G    +    ++              ++   + F    +     +   +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKG-------------------------NIPYFE 156
           +  NK D+     ++        +    G                          I    
Sbjct: 114 LFLNKKDLF--EEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHF 171

Query: 157 TSAKEGINVEEAFQCIAKNALK 178
           T A +  NV+  F  +    +K
Sbjct: 172 TCATDTKNVQFVFDAVTDVIIK 193

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.5 bits (200), Expect = 6e-20
 Identities = 26/206 (12%), Positives = 58/206 (28%), Gaps = 42/206 (20%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K+++LG    GK++ + Q    +  +    T G         FE +    ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-------EEFLIQASPSDPDNFPF 120
              +      +      + +   +        +            F    +     N   
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 121 VVLGNKI------------------------DVDGGNSRVVSEKKARAWCASKGNIPYFE 156
           ++  NK                          +      +V   + +     +  + +  
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 157 TSAKEGINVEEAFQ----CIAKNALK 178
           T+A    N+   F+     I  + LK
Sbjct: 175 TTAINTENIRLVFRDVKDTILHDNLK 200

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.0 bits (199), Expect = 1e-19
 Identities = 23/197 (11%), Positives = 51/197 (25%), Gaps = 26/197 (13%)

Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           R   ++++LG    GK++++ Q            T G      + Q +       ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRI----LHVVLTSG--IFETKFQVDK--VNFHMFDVG 55

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-------EEFLIQASPSDPDNF 118
           GQ   +   +  +      + V   +S       +N           F    +       
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 119 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK---- 174
             ++  NK D+     +V++ K        +         A      +            
Sbjct: 116 SVILFLNKQDLLAE--KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 173

Query: 175 -----NALKSGEEEEIY 186
                +          Y
Sbjct: 174 EFLRISTASGDGRHYCY 190

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.4 bits (197), Expect = 2e-19
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 1/125 (0%)

Query: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
            V+ +G    GKT L  + +  ++ +    +I       +V          I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
              L   F   A   V V D  + +            ++  S +  ++   ++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 130 DGGNS 134
               S
Sbjct: 121 AMAKS 125

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.1 bits (191), Expect = 1e-18
 Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 44/206 (21%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+++LG    GK++ + Q      S     T G         F+ +    ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-------EEFLIQASPSDPDNFPFV 121
             +   +  +      + +  ++        ++           F    +     N   +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKG-------------------------NIPYFE 156
           +  NK D+     +++       +    G                          I    
Sbjct: 117 LFLNKKDLL--EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF 174

Query: 157 TSAKEGINVEEAFQ----CIAKNALK 178
           T A +  N+   F      I +  LK
Sbjct: 175 TCATDTENIRFVFAAVKDTILQLNLK 200

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 75.9 bits (185), Expect = 6e-18
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 20/179 (11%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   + +                  +      T   +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGHI 68

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           + + +   +    +  V + D    +         +  +         N P ++LGNKID
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNKID 125

Query: 129 VD------------GGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
                         G   +   +        +   +  F  S  +     E F+ +A+ 
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.0 bits (157), Expect = 1e-13
 Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 12/174 (6%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +II G    GKTSL+            + T+ +        ++    TL  +    + R+
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 71  QS---LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
           +    L            +V      K       +  + L     S  +    ++  NK 
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 128 DVDGGNSRVV----SEKKARAWCASKG-NIPYFETSAKEGINVEEAFQCIAKNA 176
           ++             E + +     +  ++   E    E    E     +    
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 60.5 bits (145), Expect = 3e-12
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 2/169 (1%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
           L ++ + G S VGK+S +N  +N+K   +  +  G           D L  + +     A
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
              + +                     ++  D  +    + +           P +V+  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           K D           K  R              S++     +EA+  I K
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 58.1 bits (139), Expect = 2e-11
 Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 11/179 (6%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--- 67
           V ++G    GK+SL+                        V          + D  G    
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEG 62

Query: 68  -ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
               + LG+ F R      ++  V                 + A        P +V  NK
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185
           +D+           KA A   ++  +     SA  G  +    + +    ++S    E+
Sbjct: 123 VDLLEEE-----AVKALADALAREGLAVLPVSALTGAGLPALKEALHA-LVRSTPPPEM 175

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 57.4 bits (137), Expect = 3e-11
 Identities = 27/170 (15%), Positives = 45/170 (26%), Gaps = 14/170 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+I G    GK+SL+N    ++ +       G                L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP---SDPDNFPFVVLGN 125
                            +      +   D       +            P   P  V+ N
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
           K D+                 +          SA+ G  V+     + ++
Sbjct: 121 KADI----------TGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQS 160

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 56.5 bits (135), Expect = 8e-11
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           V ++G   VGK++L++   + K     Y  T     L      + R F   + D  G   
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFV--MADLPGLIE 61

Query: 70  FQS----LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF----PFV 121
                  LG  F R  +   ++  V  M   +  + + +   I    S+ +      P +
Sbjct: 62  GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121

Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
           ++ NK+D+        +E           + P F  SA     + E    +A N L++  
Sbjct: 122 IVANKMDMPE-----AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVA-NQLENTP 175

Query: 182 EEEIYLPDTI 191
           E  +Y  + +
Sbjct: 176 EFPLYDEEEL 185

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 53.2 bits (126), Expect = 1e-09
 Identities = 26/165 (15%), Positives = 45/165 (27%), Gaps = 4/165 (2%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           V I+G   VGK++L+N  +  K +                   +    +   DT G  + 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130
                 F        L      +   D  +    E  + A    P      +L     +D
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 131 GGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
                   E+  +A+            SA +   V E    +   
Sbjct: 127 AAKYP---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 168

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 2e-09
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 3/168 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++V   G S  GK+S +N   N+K   +   T G   L    +  D    + +      E
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 69  RFQSLGVAFYRGADCC---VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
             + +   + R                +           +  +     D +    V+L  
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
              +  G  +        A  A  G++     S+ +   V++  Q + 
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 51.2 bits (121), Expect = 6e-09
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 13/177 (7%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +I  G S VGK++L+ +   KK     +  +    +  E +    +         G  + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 71  ---------QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD---PDNF 118
                            +  D  VLV D  +          R E  I           + 
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 119 PFVVLGNKIDVDGGNSRVVSEKKARAWCA-SKGNIPYFETSAKEGINVEEAFQCIAK 174
           P +V  NK+D       V++    +     S+ +  +   SAK G N+E     I +
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 179

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (120), Expect = 8e-09
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 7/179 (3%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           + I+G   VGK++L+N+ + +K S   +           +  E     +   DT G    
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 66

Query: 71  QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130
           +   +           + DV  +        W  +  +  +       P ++  NK+D  
Sbjct: 67  EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 126

Query: 131 GGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPD 189
              + ++   +  A       +     SA+ G+NV+     + K+      E   + P+
Sbjct: 127 QEKADLLPHLQFLASQ--MNFLDIVPISAETGLNVDTIAAIVRKHL----PEATHHFPE 179

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 34/180 (18%), Positives = 53/180 (29%), Gaps = 8/180 (4%)

Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
              +KV I+G   VGK++L N  +NK+ +       G      + +           DTA
Sbjct: 6   TDAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64

Query: 66  GQERFQSLGVAFYRGADCCVLVY-----DVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
           G  R   +            +V      DV  +         R++  +            
Sbjct: 65  GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV 124

Query: 121 VVLGNKIDV-DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
           VV      V           K  R         P   TSA +G N++     +   A  S
Sbjct: 125 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM-NLAYAS 183

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.0 bits (115), Expect = 4e-08
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 7/175 (4%)

Query: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           V+I+G   VGK++L N+ V KK +   +   G      +   E    T ++ DT G    
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 71  QSLGVAFYRGADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
               ++         ++ + +  +   D      +E    A          +++ NK + 
Sbjct: 62  PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 121

Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 184
                    E++ +    S G       SA+  IN++   + I K   + G + E
Sbjct: 122 LR-----EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 26/175 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++I+G   VGK++L+N+ +N+  +       G        +   R    +I DTAG  
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVR 59

Query: 69  RFQSLGVAFY---------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
              +  V              AD  + V D +S    ++                  N  
Sbjct: 60  SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE----------RIKNKR 109

Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
           ++V+ NK+DV    +    + K              + SA +G  +E+  + I +
Sbjct: 110 YLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGEGLEKLEESIYR 158

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 7e-07
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 7/138 (5%)

Query: 6   RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV--QFEDRLFTLQIWD 63
            ++L V + G++G GK+S +N         +  A  G   +T E        +  +  WD
Sbjct: 54  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
             G          +          YD   + S         +              F  +
Sbjct: 114 LPGIGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAI---SMMKKEFYFV 168

Query: 124 GNKIDVDGGNSRVVSEKK 141
             K+D D  N      + 
Sbjct: 169 RTKVDSDITNEADGEPQT 186

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 37/200 (18%)

Query: 4   RRRTLLKVIILGDSGVGKTSL---MNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           + +  + + ++G    GKT+L   +      K S + K  +       E          +
Sbjct: 4   KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKK 63

Query: 61  IW--------------------------DTAGQERFQSLGVAFYRGADCCVLVYDVNSMK 94
                                       D  G E   +  ++     D  +LV   N   
Sbjct: 64  PEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF 123

Query: 95  SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS--KGNI 152
                        I            +++ NK+DV      +   ++ + +       N+
Sbjct: 124 PQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV 177

Query: 153 PYFETSAKEGINVEEAFQCI 172
           P    SA   IN++   + I
Sbjct: 178 PIIPVSALHKINIDSLIEGI 197

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 13/201 (6%)

Query: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +       L ++++G  GVGK+S +N  + ++  +              V      FTL 
Sbjct: 25  LKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLN 83

Query: 61  IWDTAG--------QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP 112
           I DT G              +           +L  D       DNL+    + +  +  
Sbjct: 84  IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFG 143

Query: 113 SDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
               N   +V          +     E  ++   A    +     S K+     +    +
Sbjct: 144 KGIWN-KAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVR-SGASLKKDAQASDIPVVL 201

Query: 173 AKN--ALKSGEEEEIYLPDTI 191
            +N       + +E  LP+ I
Sbjct: 202 IENSGRCNKNDSDEKVLPNGI 222

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 35/206 (16%)

Query: 6   RTLLKVIILGDSGVGKTSL---MNQYVNKKFSNQYKATIGADFLTKE-----------VQ 51
           +  + V  +G    GKT+L   + + + +    ++K     D   +E           V+
Sbjct: 1   KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60

Query: 52  FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 111
           +          D  G   +    +      D C+LV   N     D       E L+ A 
Sbjct: 61  YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAN-----DGPMPQTREHLLLAR 115

Query: 112 PSDPDNFPFVVLGNKIDVDGGNSRV-VSEKKAR----AWCASKGNIPYFETSAKEGINVE 166
                    VV  NK D    +  V + E + R     +       P    SA   +   
Sbjct: 116 QI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQR 173

Query: 167 EAFQCIAKNALKSGEEEEIYLPDTID 192
           +      +  LKS ++    L D +D
Sbjct: 174 D-----PELGLKSVQK----LLDAVD 190

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 25/187 (13%), Positives = 45/187 (24%), Gaps = 24/187 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           + + I G    GKT+L           +  +T   D L +  +    +            
Sbjct: 6   INLGIFGHIDHGKTTLSKVLT------EIASTSAHDKLPESQKRGITIDIGFSAFKLENY 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
           R               ++   V++    D      +      + +             I 
Sbjct: 60  RITL----VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 115

Query: 129 VDGGNSRVVSEKKAR----------AWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
           V    S     ++ +              +  N      SAK G  V+E    I      
Sbjct: 116 VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL-- 173

Query: 179 SGEEEEI 185
                EI
Sbjct: 174 --NNAEI 178

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 11  VIIL-GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++ L GD G GKT+L    +          +     + +       ++   ++  A  E 
Sbjct: 35  MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEE 94

Query: 70  FQSLGVAFYRGADCCVLV 87
            + +G+  Y   D   L+
Sbjct: 95  LEFMGIRDYFNTDSICLI 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.92
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.91
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.91
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.9
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.88
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.83
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.83
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.79
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.79
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.78
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.78
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.77
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.66
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.59
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.47
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.46
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.41
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.25
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.21
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.14
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.69
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.62
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.61
d1okkd2	207	GTPase domain of the signal recognition particle r	98.57
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.57
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.55
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.52
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.52
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.47
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.36
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.28
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.05
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.91
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.86
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.84
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.83
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.79
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.79
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.78
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.74
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.73
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.72
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.71
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.66
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.65
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.63
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.63
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.62
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.61
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.59
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.57
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.56
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.5
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.5
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.49
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.48
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.45
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.39
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.36
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.34
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.33
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.32
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.32
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.32
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.32
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.31
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.28
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.25
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.25
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.24
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.24
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.23
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.23
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.22
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.21
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.21
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.19
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.19
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.19
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.18
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.18
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.18
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.17
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.16
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.16
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.15
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.14
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.11
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.11
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.09
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.09
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.08
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.06
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.06
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.05
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.02
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.02
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.02
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.98
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.96
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.92
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.92
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.9
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.89
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.88
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.86
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.83
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.8
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.76
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.76
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.72
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.63
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.61
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.6
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.54
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.51
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.46
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.42
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.42
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.4
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.36
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.32
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.32
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.3
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.3
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.1
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.09
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.08
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.04
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.02
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.95
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.92
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.91
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.83
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.8
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.79
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.73
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.71
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.62
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.56
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.54
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.53
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.45
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.43
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.41
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.4
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.24
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.21
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.13
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.0
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.97
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.94
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.93
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.82
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.8
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.79
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.78
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.77
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.76
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.69
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.65
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.61
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.57
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.55
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.47
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.45
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.33
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.29
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.24
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.98
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.52
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.46
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.44
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.36
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.12
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.0
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.92
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	90.89
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.63
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.38
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.24
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.42
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.02
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.55
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.52
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.24
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.11
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.06
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.05
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.81
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.89
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.84
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.15
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.87
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.44
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	84.42
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.32
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.92
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.78
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.75
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.51
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.87

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-36  Score=207.54  Aligned_cols=163  Identities=35%  Similarity=0.733  Sum_probs=150.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+++|.+|+|||||+++|..+.+...+.++.+.+........++..+.+.+||++|+..+......+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999989999999888888899999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|++++++++.+..|+..+.....     ++|+++|+||+|+.+.  +....++++++++.++ ++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~~iilVgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~e  153 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSE  153 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSSHH
T ss_pred             EeccchhhhhhcccccccccccCC-----CceEEEeeccCCcccc--eeeeehhhHHHHHHcC-CEEEEeccCCCcCHHH
Confidence            999999999999999999887765     7899999999999765  6678888999999987 7999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028647          168 AFQCIAKNALK  178 (206)
Q Consensus       168 l~~~l~~~~~~  178 (206)
                      +|+.|++.+++
T Consensus       154 ~f~~l~~~~lq  164 (164)
T d1z2aa1         154 VFKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998863

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-36  Score=206.80  Aligned_cols=171  Identities=33%  Similarity=0.535  Sum_probs=151.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (206)
                      +..+.+||+|+|.+|||||||+++|..+.+...+.++.+ +.....+.+++..+.+.+||++|++++...+..+++++|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            345679999999999999999999999998888777754 4456778899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647           84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI  163 (206)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (206)
                      +++|||++++.+++.+..|+..+.......   +.|+++|+||+|+.+.  +....+++..++..++ +++++|||++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~g~  154 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAKLRL  154 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSS---CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccC---CCceEEEEEeechhhc--cccchhhhhHHHHhcC-CEEEEEeCCCCc
Confidence            999999999999999999998887654322   7899999999999765  5677888999999887 899999999999


Q ss_pred             CHHHHHHHHHHHHHhcCc
Q 028647          164 NVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~~~~  181 (206)
                      |++++|+.|++.+.++++
T Consensus       155 gv~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         155 NVDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             SHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999977654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-35  Score=205.57  Aligned_cols=167  Identities=35%  Similarity=0.682  Sum_probs=150.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+...+..+.+.+||+||++++...+..+++.+|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            46799999999999999999999999999888999998898899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||+++++++.....|...+......    ..|+++|+||.|+.+.  +.+..++++.+++..+ ++++++||++|.|+
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iivv~nK~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gv  155 (169)
T d3raba_          83 LMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNINV  155 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCS----CCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred             EEEECccchhhhhhhhhhhhhhcccCC----cceEEEEEeecccccc--cccchhhhHHHHHHcC-CEEEEecCCCCcCH
Confidence            999999999999998888776655432    7899999999998765  5677888889998887 89999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028647          166 EEAFQCIAKNALKS  179 (206)
Q Consensus       166 ~~l~~~l~~~~~~~  179 (206)
                      +++|++|++.++++
T Consensus       156 ~e~f~~l~~~i~ek  169 (169)
T d3raba_         156 KQTFERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999988753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=205.65  Aligned_cols=167  Identities=40%  Similarity=0.649  Sum_probs=151.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ...+||+|+|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+...+..+++++|+++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            45799999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|.+++.+++.+..|...+......    ..|+++|+||+|+...  .....++++.+++..+ +++++|||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~~ilvgnK~D~~~~--~~v~~~~~~~~~~~~~-~~~~~~SAktg~gV  155 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESDNV  155 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             Eeeecccchhhhhhhhhhhhhcccccc----cccEEEEEeecccccc--cchhhhHHHHHHHhCC-CEEEEEccCCCCCH
Confidence            999999999999999998888765443    7899999999998764  5677888999998887 89999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028647          166 EEAFQCIAKNALKS  179 (206)
Q Consensus       166 ~~l~~~l~~~~~~~  179 (206)
                      +++|.+|++.++..
T Consensus       156 ~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         156 EKLFLDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999888764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.8e-35  Score=203.49  Aligned_cols=165  Identities=31%  Similarity=0.549  Sum_probs=145.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+|+|.+|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+......+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            458999999999999999999999999888888887665 4567789999999999999999999899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++.+++.+..|+..+.......   ++|+++|+||.|+.+.  +.+..++++.+++.++ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piiivgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gv~  155 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD  155 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCC---CCcEEEEecccccccc--ccccHHHHHHHHHHcC-CeEEEEcCCCCcCHH
Confidence            999999999999999999887765432   7899999999999764  6778899999999997 899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      ++|++|++.+..
T Consensus       156 e~f~~l~~~i~~  167 (168)
T d1u8za_         156 KVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
Confidence            999999998854

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-34  Score=200.83  Aligned_cols=166  Identities=30%  Similarity=0.551  Sum_probs=148.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+......+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            469999999999999999999999998888888876554 5667789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC-CH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-NV  165 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i  165 (206)
                      |||+++++|++.+..|+..+.......   +.|+++++||+|+...  +.+..++++++++.++ ++++++||+++. ||
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~---~~p~ilvgnK~Dl~~~--~~v~~e~~~~~~~~~~-~~~~e~Sak~~~~nV  155 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKDPPLNV  155 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSSSCBSH
T ss_pred             ecccccchhhhccchhhHHHHhhcccc---CccEEEEecccchhhh--ceeehhhHHHHHHHcC-CEEEEEcCCCCCcCH
Confidence            999999999999999999987765432   7899999999999876  6778899999999998 899999999886 99


Q ss_pred             HHHHHHHHHHHHhc
Q 028647          166 EEAFQCIAKNALKS  179 (206)
Q Consensus       166 ~~l~~~l~~~~~~~  179 (206)
                      +++|+.|++.+.++
T Consensus       156 ~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         156 DKTFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-35  Score=205.14  Aligned_cols=167  Identities=26%  Similarity=0.452  Sum_probs=144.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.. .......++..+.+.+||++|++++...+..+++++|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            4899999999999999999999999998888887754 456667888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCcEEEe
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ||+++++||+.+..|..........    +.|+++|+||+|+.+.          ..+.+..+++++++..+++.++++|
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVEC  157 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEEC
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCC----CCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEE
Confidence            9999999999998765555544433    7899999999998643          2245788899999999887899999


Q ss_pred             eccCCCCHHHHHHHHHHHHHhc
Q 028647          158 SAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ||++|.|++++|+.+++.+++.
T Consensus       158 SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         158 SALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             CTTTCTTHHHHHHHHHHHHTSC
T ss_pred             eCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999888543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=204.00  Aligned_cols=165  Identities=38%  Similarity=0.669  Sum_probs=145.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+|+|.+|+|||||+++|..+.+...+.++.+..........++..+.+.+||++|+..+...+..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            56999999999999999999999999999999999999989899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |||+++++|++.+..|+..+......    ..|+++|+||+|+...  +.+..++++++++.++ +++++|||++|.|++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~--~~v~~~e~~~~a~~~~-~~~~e~Sak~~~~v~  154 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKGIE  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBSHH
T ss_pred             EEeCCchhHHHhhhhhhhhccccccc----ccceeeeccccccccc--cccchHHHHHHHHHcC-CeEEEEecCCCcCHH
Confidence            99999999999999998877655443    6789999999999875  6778899999999987 899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      ++|.+|++.+++
T Consensus       155 e~F~~l~~~i~~  166 (167)
T d1z08a1         155 ELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-35  Score=202.98  Aligned_cols=165  Identities=32%  Similarity=0.474  Sum_probs=148.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.+||+|+|++|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+||++|...+......++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4568999999999999999999999998888888887765 567788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||++++++++.+..|+..+.......   ++|+++|+||+|+...  +.+..++++++++.++ ++++++||++|.|+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilvgnK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v  154 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQTA  154 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhccccc---ccceeeeccccccccc--cchhHHHHHHHHHHcC-CEEEEEecCCCCCH
Confidence            9999999999999999999888765433   7899999999999765  6678899999999998 89999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028647          166 EEAFQCIAKNAL  177 (206)
Q Consensus       166 ~~l~~~l~~~~~  177 (206)
                      +++|+.|++.+.
T Consensus       155 ~~~f~~li~~~~  166 (167)
T d1xtqa1         155 VDVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-35  Score=201.27  Aligned_cols=164  Identities=38%  Similarity=0.691  Sum_probs=149.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.+||+|+|.+|+|||||+++|.++.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            45799999999999999999999999999888888888999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|+++.++++.+..|+..+......    ..|+++++||.|+...  .....++++.+++..+ +++++|||++|.|+
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Saktg~~v  154 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGENV  154 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccc----cceEEEEcccccchhh--cccHHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            999999999999999998888766543    7899999999998765  5677788999998887 89999999999999


Q ss_pred             HHHHHHHHHHH
Q 028647          166 EEAFQCIAKNA  176 (206)
Q Consensus       166 ~~l~~~l~~~~  176 (206)
                      +++|+.|++.+
T Consensus       155 ~e~f~~i~~~i  165 (166)
T d1z0fa1         155 EDAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=203.52  Aligned_cols=164  Identities=24%  Similarity=0.326  Sum_probs=131.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+|+|.+|+|||||+++|.+..+... .++ +...+...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            8999999999999999999998765432 233 33444667788999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+......   .++|+++|+||+|+.+.  +++..+++++++..++ +++++|||++|.|++++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~---~~~piilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~~~~v~~~  153 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQAL  153 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-SEEEECBTTTTBSHHHH
T ss_pred             cccccccccccccccchhhccccc---ccceEEEeecccchhhh--cchhHHHHHHHHHhcC-CEEEEEeCCCCcCHHHH
Confidence            999999999999999988766432   26899999999999765  6678889999999988 89999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 028647          169 FQCIAKNALKSG  180 (206)
Q Consensus       169 ~~~l~~~~~~~~  180 (206)
                      |+.|++.+..++
T Consensus       154 f~~l~~~i~~~~  165 (168)
T d2gjsa1         154 FEGVVRQIRLRR  165 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999886653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-35  Score=204.93  Aligned_cols=171  Identities=26%  Similarity=0.429  Sum_probs=147.7

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      .+....+||+|+|.+|||||||+++|+.+.+...+.++.+.. ....+...+..+.+.+||++|++.+...+..+++++|
T Consensus         4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~-~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~   82 (185)
T d2atxa1           4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   82 (185)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee-eeEEEeeCCceEEeecccccccchhhhhhhhcccccc
Confidence            366889999999999999999999999999988888887644 4666778888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~  152 (206)
                      ++++|||+++++||+....|..........    +.|+++|+||+|+.+.          ..+.+..++++++++.++..
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~  158 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  158 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             eeeeccccchHHHHHHHHHHHHHHHHhcCC----CCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCC
Confidence            999999999999999876555555544333    7899999999999753          23567888999999999888


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +|++|||++|.|++++|+.++++++.
T Consensus       159 ~~~E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         159 CYVECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHcC
Confidence            99999999999999999999998853

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-35  Score=202.87  Aligned_cols=170  Identities=37%  Similarity=0.676  Sum_probs=148.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.+||+|+|++|||||||+++|.++.+...+.++.+.......+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            46799999999999999999999999999888888888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||.++++++..+..|+..+......    ++|+++|+||+|+.+.  +....+....+..... .+++++||++|.|+
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~----~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~i  154 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNV  154 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCC----CCcEEEEEeeeccccc--ccchHHHHHHhhcccC-ceEEEEecCCCcCH
Confidence            999999999999999999988777653    7899999999999764  4455666667766665 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCcc
Q 028647          166 EEAFQCIAKNALKSGEE  182 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~  182 (206)
                      +++|+.+++.+.+..++
T Consensus       155 ~e~f~~l~~~i~~~~~~  171 (175)
T d2f9la1         155 EEAFKNILTEIYRIVSQ  171 (175)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999998765443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=204.07  Aligned_cols=171  Identities=39%  Similarity=0.658  Sum_probs=154.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..+||+|+|.+|||||||+++|..+.+...+.++.+.......+..++....+.+||++|++.+...+..+++.+|+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            46799999999999999999999999999899999888888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|.++++++..+..|...+......    ++|+++|+||+|+...  .....+....++...+ ++++++||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~~~gi  155 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSALTGENV  155 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEecccchhHHHHhhhhcccccccCC----ceEEEEEEecccccch--hchhhhHHHHHHHhCC-CEEEEeeCCCCcCH
Confidence            999999999999999999988776554    7899999999998654  5677778888888887 89999999999999


Q ss_pred             HHHHHHHHHHHHhcCccc
Q 028647          166 EEAFQCIAKNALKSGEEE  183 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~~~~  183 (206)
                      +++|++|++.++++.+.+
T Consensus       156 ~e~f~~l~~~i~~~~~~~  173 (174)
T d2bmea1         156 EEAFVQCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999998765543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=199.56  Aligned_cols=171  Identities=53%  Similarity=1.007  Sum_probs=152.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      +.+.+||+|+|.+|||||||+++|+.+.+...+.++.+...........+..+.+.+||++|...........+..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            35678999999999999999999999999988999998888888888999999999999999999988999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++++|.+++.+++.+..|+.++..........+.|+++|+||+|+.+   +....++++++++..+..++++|||++|.|
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~---~~v~~~~~~~~~~~~~~~~~~e~Sak~~~g  159 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDATN  159 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh---ccCcHHHHHHHHHHcCCCeEEEEcCCCCcC
Confidence            99999999999999999999988877766666899999999999865   567888999999888778999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028647          165 VEEAFQCIAKNALK  178 (206)
Q Consensus       165 i~~l~~~l~~~~~~  178 (206)
                      ++++|++|++.++.
T Consensus       160 I~e~f~~l~~~il~  173 (174)
T d1wmsa_         160 VAAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-34  Score=201.66  Aligned_cols=176  Identities=35%  Similarity=0.660  Sum_probs=156.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      -+..+||+|+|++|||||||+++|+.+.+...+.++.+.......+.+.+..+.+.+||++|++.+...+..+++++|++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35679999999999999999999999999989999999888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      |+|+|+++++++.....|...+......    +.|+++|+||+|+.+.  .....++...++...+ .+++++||++|.|
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~SAk~g~g  155 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSALDSTN  155 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTTTCTT
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccC----CceEEEEEeccccccc--cchhHHHHhhhhhccC-cceEEEecCcCcc
Confidence            9999999999999999888877665443    7899999999999876  6677788888888877 8899999999999


Q ss_pred             HHHHHHHHHHHHHhcCccccccC
Q 028647          165 VEEAFQCIAKNALKSGEEEEIYL  187 (206)
Q Consensus       165 i~~l~~~l~~~~~~~~~~~~~~~  187 (206)
                      ++++|++|++.+.+.........
T Consensus       156 i~e~f~~l~~~i~~~~~~~~~~~  178 (194)
T d2bcgy1         156 VEDAFLTMARQIKESMSQQNLNE  178 (194)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhcccCc
Confidence            99999999999987666655543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-34  Score=199.93  Aligned_cols=163  Identities=40%  Similarity=0.710  Sum_probs=150.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+|+|.+|||||||+++|..+.+...+.++.+..........++....+.+||++|++.+...+..+++.+|++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999998988888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |||++++++++.+..|...+......    +.|+++|+||+|+.+.  +....+++++++..++ +++++|||++|.|++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAININ  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCT----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCC----cceEEEecccchhccc--cchhHHHHHHHHHHcC-CEEEEEecCCCCCHH
Confidence            99999999999999998887766543    7899999999999755  6788889999999987 899999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          167 EAFQCIAKNA  176 (206)
Q Consensus       167 ~l~~~l~~~~  176 (206)
                      ++|.+|++.+
T Consensus       156 e~f~~l~~~i  165 (167)
T d1z0ja1         156 ELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999886

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=200.14  Aligned_cols=166  Identities=30%  Similarity=0.541  Sum_probs=144.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+. .....+.+++..+.+.+||++|...+......+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            389999999999999999999999988888888764 4567778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|.+++++++.+..|...+.......   ..|+++|+||+|+...  +....+++.++++.++ +++++|||++|.|+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~~~~i~e  157 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRD---EFPMILIGNKADLDHQ--RQVTQEEGQQLARQLK-VTYMEASAKIRMNVDQ  157 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSS---CCSEEEEEECTTCTTS--CSSCHHHHHHHHHHTT-CEEEECBTTTTBSHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccC---CCCEEEEEeccchhhh--ccchHHHHHHHHHHcC-CEEEEEcCCCCcCHHH
Confidence            99999999999999998877665432   6899999999999765  6778889999999988 8999999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 028647          168 AFQCIAKNALKSG  180 (206)
Q Consensus       168 l~~~l~~~~~~~~  180 (206)
                      +|..|++.+.+++
T Consensus       158 ~f~~l~~~i~k~~  170 (171)
T d2erya1         158 AFHELVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999986543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-35  Score=200.63  Aligned_cols=162  Identities=38%  Similarity=0.669  Sum_probs=149.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+|+|.+|||||||+++|..+.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++|+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999999988888888888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      |.+++.+++.+..|+..+......    +.|+++|+||.|+.+.  +....+++.++++.++ +++++|||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~SAk~g~~v~e~  153 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNVKQL  153 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCC----CceEEEEecccchhhh--hhhhHHHHHHHHHHcC-CEEEEecCCCCcCHHHH
Confidence            999999999999999988776643    7899999999999765  5667889999999987 89999999999999999


Q ss_pred             HHHHHHHHH
Q 028647          169 FQCIAKNAL  177 (206)
Q Consensus       169 ~~~l~~~~~  177 (206)
                      |++|+++++
T Consensus       154 f~~i~~~l~  162 (164)
T d1yzqa1         154 FRRVAAALP  162 (164)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHhhC
Confidence            999998763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=201.47  Aligned_cols=169  Identities=39%  Similarity=0.682  Sum_probs=148.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+...........+..+.+.+||++|++.+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            46899999999999999999999999998888888888888888889989999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++++++.+..|+..+......    ++|+++|+||+|+...  +....++...+++..+ ++++++||++|.|++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~D~~~~--~~~~~~~~~~~a~~~~-~~~~e~Sa~tg~~V~  154 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTACNVE  154 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCC----CCeEEEEecCCchhhh--hhhHHHHHHHHHHHcC-CEEEEecCCCCCCHH
Confidence            99999999999999999888765543    7899999999998765  5677888999998887 899999999999999


Q ss_pred             HHHHHHHHHHHhcCcc
Q 028647          167 EAFQCIAKNALKSGEE  182 (206)
Q Consensus       167 ~l~~~l~~~~~~~~~~  182 (206)
                      ++|.+|++.+.++.++
T Consensus       155 e~f~~i~~~i~~~~~~  170 (173)
T d2a5ja1         155 EAFINTAKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999998875443

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=199.82  Aligned_cols=166  Identities=27%  Similarity=0.460  Sum_probs=144.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      ..||+|+|++|+|||||+++|..+.+...+.++.+. ........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-eccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            478999999999999999999999998888888764 4456677889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ||+++++||+.+..|..........    ++|+++|+||+|+.+..          .+....++++.+++.++..+|++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  156 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC  156 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCC----CCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEe
Confidence            9999999999987766665555443    78999999999997642          234678889999999987899999


Q ss_pred             eccCCCCHHHHHHHHHHHHHh
Q 028647          158 SAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       158 S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ||++|.|++++|+.+.+.+++
T Consensus       157 SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         157 SAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhC
Confidence            999999999999999998864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-35  Score=202.38  Aligned_cols=173  Identities=65%  Similarity=1.088  Sum_probs=138.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +.+||+|+|++|||||||+++|+++.+...+.++.+........... .....+.+||++|++.+...+..+++.+|+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            35899999999999999999999999888888877766655555443 34467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+.++..........++|+++|+||+|+.+. .+....+++++++..++..++++|||++|.|+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~-~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-KKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  159 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh-hcchhHHHHHHHHHHcCCCeEEEEeCCCCcCH
Confidence            99999999999999999999988776666668999999999999753 24467788899999988789999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 028647          166 EEAFQCIAKNALKSG  180 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~  180 (206)
                      +++|++|++.+++++
T Consensus       160 ~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         160 DTAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-35  Score=202.76  Aligned_cols=166  Identities=28%  Similarity=0.430  Sum_probs=144.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+|+|.+|+|||||+++|+.+.+...+.++.+..+ ......++..+.+.+||++|++.+......+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            468999999999999999999999998888888887554 4556788999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |||++++++++.+..|+..+......  ..++|+++|+||+|+.+.  +.+..++++++++.++ +++++|||++|.|++
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piilVgnK~Dl~~~--~~v~~~e~~~~~~~~~-~~~~e~Sak~~~~v~  154 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK  154 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred             Eeecccccchhcccchhhhhhhhhcc--CCCCcEEEEeeccccccc--ccccHHHHHHHHHHcC-CeEEEEcCCCCcCHH
Confidence            99999999999999998887665432  227899999999998765  6677889999999988 899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028647          167 EAFQCIAKNALK  178 (206)
Q Consensus       167 ~l~~~l~~~~~~  178 (206)
                      ++|+.|++.+.+
T Consensus       155 e~f~~l~~~~~~  166 (171)
T d2erxa1         155 ELFQELLNLEKR  166 (171)
T ss_dssp             HHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHH
Confidence            999999986543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-35  Score=204.19  Aligned_cols=163  Identities=29%  Similarity=0.620  Sum_probs=140.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+|+|++|+|||||+++|+.+.+...+.++.+.++....+..++..+.+.+||++|+..+...+..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999988999999888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      ||+++++|++.+..|+..+.....     ++|+++|+||+|+.....    .++...++...+ ++++++||++|.|+++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-----~~piilvgnK~Dl~~~~~----~~~~~~~~~~~~-~~~~e~Sak~~~~v~e  152 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN-LQYYDISAKSNYNFEK  152 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-----SCCEEEEEECCCCSCSCC----TTTSHHHHSSCS-SEEEEEBTTTTBTTTH
T ss_pred             cccccccccchhHHHHHHHhhccC-----CCceeeecchhhhhhhhh----hhHHHHHHHHcC-CEEEEEeCCCCCCHHH
Confidence            999999999999999998887764     789999999999976532    233445666665 8999999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 028647          168 AFQCIAKNALKSG  180 (206)
Q Consensus       168 l~~~l~~~~~~~~  180 (206)
                      +|++|++.++..+
T Consensus       153 ~f~~l~~~l~~~~  165 (170)
T d1i2ma_         153 PFLWLARKLIGDP  165 (170)
T ss_dssp             HHHHHHHHHHTCT
T ss_pred             HHHHHHHHHccCC
Confidence            9999999997543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=198.55  Aligned_cols=165  Identities=30%  Similarity=0.557  Sum_probs=146.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|+..+......+++++|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            358999999999999999999999999988888877555 5566788889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |||++++++++.+..|+..+......   +++|+++|+||+|+...  .....++...+++.+.+.++++|||++|.|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~---~~~p~ilvgnK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~  155 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCC---CCCeEEEEEEecCcccc--cccchhHHHHHHHHhCCCEEEEEcCCCCcCHH
Confidence            99999999999999999988775432   27899999999999865  56777888888888777999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028647          167 EAFQCIAKNAL  177 (206)
Q Consensus       167 ~l~~~l~~~~~  177 (206)
                      ++|++|++.+.
T Consensus       156 e~F~~l~~~i~  166 (167)
T d1c1ya_         156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-34  Score=202.38  Aligned_cols=174  Identities=79%  Similarity=1.250  Sum_probs=156.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.++........+..+.+.+||++|+..+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|.+++.+++.+..|+..+..........++|+++|+||+|+.+   +....++..+++....+.++++|||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  158 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  158 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc---cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHH
Confidence            99999999999999999888877766666889999999999876   456677777887777679999999999999999


Q ss_pred             HHHHHHHHHHhcCcccc
Q 028647          168 AFQCIAKNALKSGEEEE  184 (206)
Q Consensus       168 l~~~l~~~~~~~~~~~~  184 (206)
                      +|++|++.++++..+.+
T Consensus       159 ~f~~l~~~i~~~~~~~~  175 (184)
T d1vg8a_         159 AFQTIARNALKQETEVE  175 (184)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccc
Confidence            99999999988655443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=198.56  Aligned_cols=166  Identities=40%  Similarity=0.696  Sum_probs=151.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      +...+||+|+|.+|||||||+++|..+.+...+.++.+..............+.+.+||++|++.+...+..+++++|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   82 (170)
T d1r2qa_           3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             ceeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceE
Confidence            44579999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|.+++++++.+..|...+......    +.|+++|+||+|+.+.  +.+..+++++++...+ ++++++||++|.|
T Consensus        83 ilv~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~v~~e~~~~~~~~~~-~~~~e~SAk~g~~  155 (170)
T d1r2qa_          83 IVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMN  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred             EEEeccchhhHHHHHHHHhhhhhhccCC----CceEEeeccccccccc--ccccHHHHHHHHHhcC-CEEEEeeCCCCCC
Confidence            9999999999999999998888766543    7899999999999765  6788899999999887 8999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028647          165 VEEAFQCIAKNAL  177 (206)
Q Consensus       165 i~~l~~~l~~~~~  177 (206)
                      ++++|+.|++.+.
T Consensus       156 V~e~f~~l~~~i~  168 (170)
T d1r2qa_         156 VNEIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-34  Score=201.27  Aligned_cols=168  Identities=41%  Similarity=0.713  Sum_probs=122.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            46799999999999999999999999888888888888998999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|||++++.+++.+..|...+......    +.|+++|+||.|+...  .....+++..++...+ +++++|||++|+|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~~k~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~gv  156 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAKANINV  156 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC---CCH
T ss_pred             EEEECCChhhHHHHHHHHHHhhhhccC----CceEEEEEecccchhh--cccHHHHHHHHHHhcC-CEEEEEeCCCCCCH
Confidence            999999999999999998887655443    7899999999998875  5566677888888887 89999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 028647          166 EEAFQCIAKNALKSG  180 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~  180 (206)
                      +++|++|++.+..+.
T Consensus       157 ~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         157 ENAFFTLARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999886543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-34  Score=197.10  Aligned_cols=164  Identities=33%  Similarity=0.569  Sum_probs=145.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+|+|.+|||||||+++|+++.+...+.++.+. .......+++..+.+.+||++|++.+......+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            3599999999999999999999999988888887764 446677789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |+|++++++++.+..|...+......   +++|+++|+||+|+...  +....++++.+++.++ +++++|||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~g~~i~  154 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVD  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccC---CCCCEEEEEEccchhhc--ccchHHHHHHHHHHcC-CeEEEECCCCCcCHH
Confidence            99999999999999999887765432   27899999999999765  5667788889998887 889999999999999


Q ss_pred             HHHHHHHHHHH
Q 028647          167 EAFQCIAKNAL  177 (206)
Q Consensus       167 ~l~~~l~~~~~  177 (206)
                      ++|+.|++.+.
T Consensus       155 e~f~~i~~~i~  165 (167)
T d1kaoa_         155 ELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=193.79  Aligned_cols=163  Identities=33%  Similarity=0.592  Sum_probs=145.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+|+|++|||||||+++|+++.+...+.++.+..+. ......+..+.+.+||++|++.+......+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            499999999999999999999999998888888877664 4456788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|.+++.+++.+..|+..+.......   ++|+++|+||+|+..   +....++++++++.++ ++++++||++|+|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~e~Sak~g~gi~e  154 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKCDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVED  154 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCS---SCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCTTHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCC---CCeEEEEeccccccc---ccccHHHHHHHHHHhC-CeEEEEcCCCCcCHHH
Confidence            99999999999999999887765432   689999999999865   4567788999999987 8999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028647          168 AFQCIAKNALK  178 (206)
Q Consensus       168 l~~~l~~~~~~  178 (206)
                      +|.+|++.+.+
T Consensus       155 ~f~~i~~~i~~  165 (166)
T d1ctqa_         155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=203.07  Aligned_cols=170  Identities=43%  Similarity=0.696  Sum_probs=147.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC----------eEEEEEEEeCCChhhhccchh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED----------RLFTLQIWDTAGQERFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~g~~~~~~~~~   75 (206)
                      +..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+||++|++.+...+.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            4569999999999999999999999999888888888777776665543          346799999999999999999


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .+++++|++++|||++++.+++.+..|+..+....   .....|+++|+||.|+...  +.+..+++.++++.++ ++++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iilv~nK~Dl~~~--~~v~~~e~~~~~~~~~-~~~~  156 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPYF  156 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEE
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhc---cCCCceEEEEeeeccchhh--hcchHHHHHHHHHHcC-CEEE
Confidence            99999999999999999999999998887664432   2337899999999999765  6788889999999987 8999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~~~  181 (206)
                      ++||++|.|++++|++|++.+.++.+
T Consensus       157 e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         157 ETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-33  Score=194.62  Aligned_cols=168  Identities=36%  Similarity=0.635  Sum_probs=151.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      .+.+||+|+|.+|+|||||+++|.++.+...+.++.+.......+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999999898998888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+.++.......   ..|+++++||.|...   +....++++++++..+ ++++++||++|+|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~~i~~~~nk~d~~~---~~v~~~~~~~~~~~~~-~~~~e~Sa~tg~gv  157 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRN---DIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKTCDGV  157 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCS---CCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECCCccccccchhhhhhhccccccc---ceeeEEEeecccccc---ccccHHHHHHHHHHCC-CEEEEEeCCCCCCH
Confidence            9999999999999999998876544332   679999999999765   5677888889999887 89999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 028647          166 EEAFQCIAKNALKSG  180 (206)
Q Consensus       166 ~~l~~~l~~~~~~~~  180 (206)
                      +++|++|++.+++.+
T Consensus       158 ~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         158 QCAFEELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHccCc
Confidence            999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=197.03  Aligned_cols=169  Identities=25%  Similarity=0.440  Sum_probs=143.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.+||+|+|.+|||||||+++|+.+.+...+.++.+.. ....+..++..+.+.+||++|++.+......+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec-eeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            456999999999999999999999999998888887644 4566778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEE
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      +|||++++++++.+..|..........    ++|+++|+||+|+....          .......+...+++.++..+|+
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  157 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  157 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCC----CCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEE
Confidence            999999999999987644444443332    78999999999986541          1334566888888888888999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhc
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      +|||++|.|++++|+.|++.++..
T Consensus       158 E~SAk~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         158 ECSALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             EcCCCCCcCHHHHHHHHHHHHcCC
Confidence            999999999999999999998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-33  Score=193.55  Aligned_cols=164  Identities=40%  Similarity=0.717  Sum_probs=142.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+|+|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +|.+++++++.+..|...+......    ..|+++++||.|+..   .....++.++++..++ +++++|||++|+|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~i~~~~k~d~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~e  153 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVNE  153 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccC----cceeeeecchhhhhh---hhhhHHHHHHHHHhcC-CeEEEECCCCCCCHHH
Confidence            9999999999998888777766543    678999999999865   4566788888988887 8999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028647          168 AFQCIAKNALKS  179 (206)
Q Consensus       168 l~~~l~~~~~~~  179 (206)
                      +|++|++.+.++
T Consensus       154 ~f~~l~~~i~~k  165 (166)
T d1g16a_         154 IFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=195.17  Aligned_cols=164  Identities=27%  Similarity=0.479  Sum_probs=140.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+|+|++|+|||||+++|+.+.+...+.++.+..+. .....++..+.+.+||++|++.+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            489999999999999999999999999899999887764 445578888999999999987664 455678899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC-CHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-NVE  166 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~  166 (206)
                      ||++++++++.+..|...+......   .+.|+++|+||+|+...  +.+..++++++++.++ ++++++||++|. |++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~Saktg~gnV~  153 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGNIT  153 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTCHH
T ss_pred             cccCCccchhhhhhhcccccccccc---cCcceeeeccchhhhhh--ccCcHHHHHHHHHHhC-CeEEEEccccCCcCHH
Confidence            9999999999998877655444332   27899999999999764  6788999999999997 899999999998 599


Q ss_pred             HHHHHHHHHHHhc
Q 028647          167 EAFQCIAKNALKS  179 (206)
Q Consensus       167 ~l~~~l~~~~~~~  179 (206)
                      ++|..|++.+.++
T Consensus       154 e~F~~l~~~i~~~  166 (168)
T d2atva1         154 EIFYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-33  Score=191.02  Aligned_cols=165  Identities=41%  Similarity=0.693  Sum_probs=139.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      +..+||+|+|+++||||||+++|..+.+... ..++.+.++....+..++..+.+.+|||+|++.+...+..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            4569999999999999999999999887644 455567788888889999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      ++|+|+++++++..+..|...+......    ..|+++|+||.|+...  .....+++..+++.++ ++++++||++|.|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~~k~d~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~g  156 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTGLN  156 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTCTT
T ss_pred             EEEecCCcccchhhhhhhhhhhhhccCC----CceEEEEEeeechhhc--ccccHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence            9999999999999999988877766543    6799999999998876  6777889999999887 8999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028647          165 VEEAFQCIAKNAL  177 (206)
Q Consensus       165 i~~l~~~l~~~~~  177 (206)
                      ++++|++|++.+.
T Consensus       157 i~e~f~~l~~~i~  169 (170)
T d2g6ba1         157 VDLAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999998874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-33  Score=192.71  Aligned_cols=164  Identities=38%  Similarity=0.674  Sum_probs=148.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+.++....+...+..+.+.+||++|++.+......++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-NSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      ||.+++.+++.+..|...+......    ..|+++++||+|+.+. ..+....++++++++..+ ++++++||++|.|++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gV~  157 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVN  157 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred             EeCCcccchhhhhhhhhhhcccccc----ccceeeeecccccccccchhhhhHHHHHHHHHHcC-CEEEEecCCCCcCHH
Confidence            9999999999999998776665443    6799999999998643 346778889999999988 799999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          167 EAFQCIAKNA  176 (206)
Q Consensus       167 ~l~~~l~~~~  176 (206)
                      ++|..|++.+
T Consensus       158 e~F~~i~~~i  167 (170)
T d1ek0a_         158 DVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-32  Score=191.27  Aligned_cols=166  Identities=24%  Similarity=0.366  Sum_probs=138.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCC---hhhhccchhhhhccCc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAG---QERFQSLGVAFYRGAD   82 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~d   82 (206)
                      ..+||+++|.+|+|||||+++|.+..+.. ...++++.+.+...+.+++..+.+.+||+++   ++++  ....+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            36899999999999999999999876553 3445566677788888999999999999875   4444  4566789999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|||++++.+++.+..|...+.....   .+++|+++|+||+|+...  +.+..+++++++..++ ++++++||++|
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sak~g  153 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAVQ  153 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTT
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccc---cCCceEEEEecccccccc--ccccHHHHHHHHHHcC-CeEEEEeCCCC
Confidence            99999999999999999999888765432   227899999999999765  6677888999998887 89999999999


Q ss_pred             CCHHHHHHHHHHHHHhcC
Q 028647          163 INVEEAFQCIAKNALKSG  180 (206)
Q Consensus       163 ~~i~~l~~~l~~~~~~~~  180 (206)
                      .|++++|+.|++.+..++
T Consensus       154 ~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         154 HNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             BSHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHcc
Confidence            999999999999986654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-32  Score=192.27  Aligned_cols=167  Identities=22%  Similarity=0.409  Sum_probs=143.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+++|.+|||||||+++|..+.+...+.++.+.. ......+++..+.+.+||++|++.+......+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeec-ccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            4799999999999999999999999988888877544 455677888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCcEEEe
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIPYFET  157 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ||+++++||+.+..|..........    +.|+++|+||+|+...          ..+.+..++...+++..+...|++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~  156 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  156 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             eecccCCCHHHHHHHHHHHHhccCC----cceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEE
Confidence            9999999999988766555444433    7899999999998642          2355778899999999887899999


Q ss_pred             eccCCCC-HHHHHHHHHHHHHhc
Q 028647          158 SAKEGIN-VEEAFQCIAKNALKS  179 (206)
Q Consensus       158 S~~~~~~-i~~l~~~l~~~~~~~  179 (206)
                      ||++|.+ ++++|+.+++.++++
T Consensus       157 SAk~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         157 SALQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             eCCCCCcCHHHHHHHHHHHHhcC
Confidence            9999985 999999999998763

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-32  Score=188.59  Aligned_cols=169  Identities=23%  Similarity=0.438  Sum_probs=141.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+|+|++|||||||+++|..+.+... .++.+..+ ...+.+++..+.+.+||++|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            469999999999999999999999987643 44444444 667788999999999999997654     37889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      |||+++++||+.+..|...+..... ....++|+++|+||.|+.....+.+..++++.++....+++|++|||++|.|++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~-~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRG-EGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhh-cccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            9999999999999999887765432 233478999999999987766677888899999877766899999999999999


Q ss_pred             HHHHHHHHHHHhcCccc
Q 028647          167 EAFQCIAKNALKSGEEE  183 (206)
Q Consensus       167 ~l~~~l~~~~~~~~~~~  183 (206)
                      ++|..+++.++..+++.
T Consensus       156 ~~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         156 RVFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhc
Confidence            99999999998876554

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-32  Score=187.09  Aligned_cols=161  Identities=37%  Similarity=0.673  Sum_probs=142.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-chhhhhccCcEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCV   85 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   85 (206)
                      +.+||+|+|.+|||||||+++|..+.+...+.++.+.........+......+.+||++|...... .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999999999999988888888888999999999999999776655 4667889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC---C
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE---G  162 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~  162 (206)
                      +|||++++++++.+..|+..+......   +++|+++|+||+|+.+.  +.+..++++++++.++ +++++|||++   +
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~pi~lvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAkt~~~~  154 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPNDN  154 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGGGG
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccC---CCCeEEEEeccccchhc--cchhHHHHHHHHHHCC-CEEEEEecccCCcC
Confidence            999999999999999999988776543   27899999999999765  5678899999999987 8999999986   5


Q ss_pred             CCHHHHHHHHH
Q 028647          163 INVEEAFQCIA  173 (206)
Q Consensus       163 ~~i~~l~~~l~  173 (206)
                      +||+++|.+|+
T Consensus       155 ~~V~e~F~~lA  165 (165)
T d1z06a1         155 DHVEAIFMTLA  165 (165)
T ss_dssp             SCHHHHHHHHC
T ss_pred             cCHHHHHHHhC
Confidence            69999998873

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.98  E-value=9.9e-32  Score=184.89  Aligned_cols=161  Identities=23%  Similarity=0.385  Sum_probs=127.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+++|++|||||||+++|..+.+...+.+|.+.++.  .+...+  +.+.+||+||+..+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            689999999999999999999999988888887765543  344555  6789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHH-HHHHHHhcCCCcEEEeeccCCCCHH
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKK-ARAWCASKGNIPYFETSAKEGINVE  166 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~i~  166 (206)
                      +|+++.++++....++..+.....   .+++|+++|+||.|+.+........+. ...++... .++++++||++|+|++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~e~Sa~~g~gv~  153 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR-EICCYSISCKEKDNID  153 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS-CEEEEECCTTTCTTHH
T ss_pred             cccccccccchhhhhhhhhhhhhc---ccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhC-CCEEEEEeCcCCcCHH
Confidence            999999999998888877765433   237899999999999765322111111 11112222 3689999999999999


Q ss_pred             HHHHHHHHHH
Q 028647          167 EAFQCIAKNA  176 (206)
Q Consensus       167 ~l~~~l~~~~  176 (206)
                      ++|++|++++
T Consensus       154 e~~~~l~~~~  163 (164)
T d1zd9a1         154 ITLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHcc
Confidence            9999998853

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.4e-31  Score=186.11  Aligned_cols=165  Identities=23%  Similarity=0.357  Sum_probs=124.5

Q ss_pred             cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647            3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (206)
                      ...++.+||+++|++|||||||+++|.++.+... .++.+  .....+...+  +.+.+||++|++.+...+..+++.+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccc
Confidence            4556789999999999999999999998876422 22333  2334445555  67899999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647           83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (206)
                      ++++|+|++++.++.....++..+......   .++|+++|+||+|+.+........+...........+.+++|||++|
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~---~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKL---SCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGG---TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhcc---CCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            999999999999999988877776544332   37899999999999865322221111111111122367999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028647          163 INVEEAFQCIAKN  175 (206)
Q Consensus       163 ~~i~~l~~~l~~~  175 (206)
                      +|++++|++|++.
T Consensus       163 ~gv~e~~~~l~~~  175 (176)
T d1fzqa_         163 EGVQDGMNWVCKN  175 (176)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=9.8e-31  Score=180.02  Aligned_cols=159  Identities=19%  Similarity=0.337  Sum_probs=122.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+++|++|||||||+++|.+..+. ...++.+..  ...+...+  +.+.+||++|++.+...+..++..++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee--eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999887653 445555433  33444554  7789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH--Hh--cCCCcEEEeeccCCC
Q 028647           88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC--AS--KGNIPYFETSAKEGI  163 (206)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~S~~~~~  163 (206)
                      +|+++..++.....++........   ..+.|+++|+||+|+.+...    .++.....  ..  ...+++++|||++|+
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  149 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQDLPGALS----CNAIQEALELDSIRSHHWRIQGCSAVTGE  149 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eecccchhHHHHHHhhhhhhhhcc---cCCCceEEEEeccccccccC----HHHHHHHHHhhhhhcCCCEEEEEECCCCC
Confidence            999999998888777665543322   23789999999999976422    22222221  11  123678999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 028647          164 NVEEAFQCIAKNALK  178 (206)
Q Consensus       164 ~i~~l~~~l~~~~~~  178 (206)
                      |++++|++|++++.+
T Consensus       150 gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         150 DLLPGIDWLLDDISS  164 (165)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999998865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=1.3e-30  Score=182.16  Aligned_cols=163  Identities=19%  Similarity=0.328  Sum_probs=120.9

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .++.+||+++|.+|||||||+++|....+. ...++.+...  ......+  +.+.+||++|++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            456799999999999999999999877654 2334444333  3333444  7789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeecc
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~  160 (206)
                      ++|+|.+++.++.....|+..+.....   ..+.|++||+||+|+.+..    ..+++.+...    ....+++++|||+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~---~~~~piliv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~e~SA~  161 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEE---LQDAALLVFANKQDQPGAL----SASEVSKELNLVELKDRSWSIVASSAI  161 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSST---TSSCEEEEEEECTTSTTCC----CHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhc---cCCcceEEEEEeecccccc----CHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence            999999999999988888776654332   3378999999999997642    1222222211    1123679999999


Q ss_pred             CCCCHHHHHHHHHHHHHhc
Q 028647          161 EGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~  179 (206)
                      +|+|++++|++|++.+.++
T Consensus       162 ~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         162 KGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999988653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=7.2e-30  Score=176.97  Aligned_cols=162  Identities=17%  Similarity=0.301  Sum_probs=120.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.++|+++|++|||||||+++|..+.+.. ..++.+..  ........  +.+.+||+||+..+...+..+++.+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEE--EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeee--EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            456999999999999999999999876432 23333322  23333333  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHH-HHHHHHhcCCCcEEEeeccCCCC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKK-ARAWCASKGNIPYFETSAKEGIN  164 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~  164 (206)
                      +|+|+++.+++..+..|+..+.....   ..+.|+++|+||+|+.+........+. ....+... .+.+++|||++|+|
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~---~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~e~SA~tg~g  160 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR-NWYVQPSCATSGDG  160 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS-CEEEEECBTTTTBT
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcc---cccceeeeeeecccccccccHHHHHHHHHHHHHHhC-CCEEEEeeCCCCcC
Confidence            99999999999999888777654322   227899999999999764222111111 11111122 36789999999999


Q ss_pred             HHHHHHHHHHHH
Q 028647          165 VEEAFQCIAKNA  176 (206)
Q Consensus       165 i~~l~~~l~~~~  176 (206)
                      ++++|++|.+.+
T Consensus       161 v~e~~~~l~~~~  172 (173)
T d1e0sa_         161 LYEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=3.9e-28  Score=165.79  Aligned_cols=158  Identities=15%  Similarity=0.261  Sum_probs=119.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (206)
                      +||+++|++|||||||+++|.++.+..........   .  ...+...+.+.+||++|...+......++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---V--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---E--EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---E--EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988765443333221   2  223344478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc-ccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647           89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV-VSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus        89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      |..++.++.....|...+......   ...|+++++||.|+....... ...+....++... +++++++||++|+|+++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~SAktg~gi~e  151 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDEL---RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR-NWYIQATCATSGDGLYE  151 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGG---TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSC-CEEEEECBTTTTBTHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcc---cCceEEEEeecccccccccHHHHHHHHHHHHHhhC-CCEEEEeECCCCCCHHH
Confidence            999999999988887777644332   378999999999987653211 1111222223333 37899999999999999


Q ss_pred             HHHHHHHH
Q 028647          168 AFQCIAKN  175 (206)
Q Consensus       168 l~~~l~~~  175 (206)
                      +|++|.++
T Consensus       152 ~~~~l~~~  159 (160)
T d1r8sa_         152 GLDWLSNQ  159 (160)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.3e-26  Score=161.15  Aligned_cols=159  Identities=17%  Similarity=0.120  Sum_probs=111.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh--------ccchhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--------QSLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~   76 (206)
                      .+.-.|+|+|.+|+|||||+|+|++..... ...+.++...........+  ..+.+|||||....        ......
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            345579999999999999999999876432 3344444444444455555  46789999995332        233344


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .++++|++++|+|++++..... ..+...+ .....    +.|+++|+||+|+...     ..+....+...++...+++
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l-~~~~~----~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~  149 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARAL-KPLVG----KVPILLVGNKLDAAKY-----PEEAMKAYHELLPEAEPRM  149 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHH-GGGTT----TSCEEEEEECGGGCSS-----HHHHHHHHHHTSTTSEEEE
T ss_pred             ccccccceeeeechhhhhcccc-cchhhhe-ecccc----chhhhhhhcccccccC-----HHHHHHHHHhhcccCceEE
Confidence            5678999999999988654332 2333333 32222    6899999999998653     2334455556666678999


Q ss_pred             eeccCCCCHHHHHHHHHHHHH
Q 028647          157 TSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      +||++|.|+++|+++|++.++
T Consensus       150 iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         150 LSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCC
T ss_pred             EecCCCCCHHHHHHHHHHhCC
Confidence            999999999999999988764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=159.65  Aligned_cols=159  Identities=18%  Similarity=0.268  Sum_probs=115.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      ++.+||+|+|.+|||||||+++|.++.+.... ++.+  .........+  ..+.+||+++.......+...+..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc--eeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            56699999999999999999999988765322 2222  1222333344  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccC
Q 028647           86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~  161 (206)
                      +++|.++..+++....+.........   ....|+++|+||+|+......    ++..+...    ....++++++||++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~Sa~t  160 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKECMTV----AEISQFLKLTSIKDHQWHIQACCALT  160 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTCCCH----HHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             eecccccccchhhhhhhhhhhhhccc---ccceEEEEEEEcccccccCcH----HHHHHHHHHHhhHhcCCEEEEEeCCC
Confidence            99999999988877665554443322   227899999999999765322    22222221    22346899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028647          162 GINVEEAFQCIAKNA  176 (206)
Q Consensus       162 ~~~i~~l~~~l~~~~  176 (206)
                      |+|+++++++|.+++
T Consensus       161 g~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         161 GEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=1.6e-25  Score=155.56  Aligned_cols=162  Identities=19%  Similarity=0.150  Sum_probs=109.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc-------ceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-------GADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (206)
                      +.++|+++|++|+|||||+|+|++...........       +...........+  ..+.++|++|+..+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            56899999999999999999998644322211111       1111122222333  46789999999999998888999


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---CCCcEEE
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---GNIPYFE  156 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~  156 (206)
                      .+|++++++|+.++...+.. ..+..+...       ++|+++|+||+|+...+......+..+++....   .+.++++
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~-~~~~~~~~~-------~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  153 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTG-EHMLILDHF-------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  153 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHH-HHHHHHHHT-------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hccccccccccccccchhhh-hhhhhhhhc-------CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEE
Confidence            99999999999976443322 222222111       789999999999987533233333344444332   3468999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHh
Q 028647          157 TSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       157 ~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +||++|+|+++|++.|.+.+.+
T Consensus       154 iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         154 ISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEccCCcCHHHHHHHHHhcCCc
Confidence            9999999999999999998865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=9.3e-25  Score=149.96  Aligned_cols=164  Identities=20%  Similarity=0.338  Sum_probs=120.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+++|.+|||||||+++|+++.+... .++.+  ........++  +.+.++|.++...........+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            358999999999999999999999887642 23332  2333344444  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc-cHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647           87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-SEKKARAWCASKGNIPYFETSAKEGINV  165 (206)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (206)
                      ++|..+..++.....+.........   ....|+++++||.|+........ ..+....++... .++++++||++|.|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~~~SA~~g~gv  154 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDR-KWQIFKTSATKGTGL  154 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTS-CEEEEECCTTTCTTH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhc---cccceEEEEEeeccccccccHHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCH
Confidence            9999998887777665554443322   22679999999999986532211 111111222223 478999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028647          166 EEAFQCIAKNALKS  179 (206)
Q Consensus       166 ~~l~~~l~~~~~~~  179 (206)
                      +++|++|++.+.++
T Consensus       155 ~e~~~~l~~~l~~k  168 (169)
T d1upta_         155 DEAMEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999987553

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6.1e-25  Score=152.80  Aligned_cols=160  Identities=14%  Similarity=0.050  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh----c---cchhhhhccCc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----Q---SLGVAFYRGAD   82 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~d   82 (206)
                      +|+++|.+|||||||+|+|++...........+........... ....+.+|||||....    .   ......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeec-CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            59999999999999999999876543333343333333333222 2246789999994221    1   12334567899


Q ss_pred             EEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647           83 CCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK  160 (206)
Q Consensus        83 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (206)
                      ++++++|....  .+......++........     ++|+++|+||+|+....    ..++..+..... +.+++++||+
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~~----~~~~~~~~~~~~-~~~~~~iSA~  151 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALL-----RRPSLVALNKVDLLEEE----AVKALADALARE-GLAVLPVSAL  151 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHH-----HSCEEEEEECCTTSCHH----HHHHHHHHHHTT-TSCEEECCTT
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccc-----hhhhhhhhhhhhhhhHH----HHHHHHHHHHhc-CCeEEEEEcC
Confidence            99999998753  233333344433322222     57999999999997641    233344444444 4899999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcC
Q 028647          161 EGINVEEAFQCIAKNALKSG  180 (206)
Q Consensus       161 ~~~~i~~l~~~l~~~~~~~~  180 (206)
                      +|.|+++|++.|.+.+....
T Consensus       152 tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         152 TGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             TCTTHHHHHHHHHHHHHTSC
T ss_pred             CCCCHHHHHHHHHHHHhhcC
Confidence            99999999999988886543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.8e-25  Score=152.78  Aligned_cols=150  Identities=23%  Similarity=0.323  Sum_probs=108.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc--------cchhhhhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYR   79 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   79 (206)
                      ++|+++|.+|||||||+|+|++..... ...++.+.......+...+  ..+.++|++|.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999876542 3334444444444555565  567899999943222        22345568


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      .+|++++++|..+..+.+....|...+... ..    +.|+++|+||+|+.......          ......+++++||
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~----~~~iilv~NK~Dl~~~~~~~----------~~~~~~~~~~iSA  144 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PA----KLPITVVRNKADITGETLGM----------SEVNGHALIRLSA  144 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CT----TCCEEEEEECHHHHCCCCEE----------EEETTEEEEECCT
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-cc----ccceeeccchhhhhhhHHHH----------HHhCCCcEEEEEC
Confidence            899999999999877766555554443332 22    78999999999987653211          1234578999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 028647          160 KEGINVEEAFQCIAKN  175 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~  175 (206)
                      ++|.|+++|+++|.+.
T Consensus       145 k~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         145 RTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             TTCTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.8e-24  Score=147.85  Aligned_cols=153  Identities=24%  Similarity=0.353  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (206)
                      ||+++|++|||||||+++|.++.+. ...++.+...  ......+  ....+||+++...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeE--EEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999998765 3344444333  2333334  567899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-----------hcCCCcEEEee
Q 028647           90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-----------SKGNIPYFETS  158 (206)
Q Consensus        90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~S  158 (206)
                      .++..++.....+.........   ..+.|+++++||.|+....    ...+......           ....+.+++||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~~~k~d~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNAV----SEAELRSALGLLNTTGSQRIEGQRPVEVFMCS  149 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTT---TTTCCEEEEEECTTSSSCC----CHHHHHHHHTCSSCCC---CCSSCCEEEEEEB
T ss_pred             ccchhhhhhhhHHHHhhhhhhc---cCCceEEEEeccccccccC----CHHHHHHHhhhhhhhHHHhhcccCCCEEEEee
Confidence            9999988887777666554333   3478999999999997642    2222222211           12235799999


Q ss_pred             ccCCCCHHHHHHHHHH
Q 028647          159 AKEGINVEEAFQCIAK  174 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~  174 (206)
                      |++|+|++++|+||.+
T Consensus       150 A~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         150 VVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTTTBSHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHhC
Confidence            9999999999999975

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=6.4e-24  Score=146.39  Aligned_cols=158  Identities=21%  Similarity=0.265  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccchhhhhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAFYR   79 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~   79 (206)
                      .|+|+|++|||||||+++|++..... ...+..+.......+...+  ..+.++|++|..         .+......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            68999999999999999999766432 2233333333333344444  568899999931         12333445567


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      .+|++++++|......... ..++..+...       ++|+++|+||+|+..+    ...+...++ ...+...++++||
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~-------~~pviiv~NK~Dl~~~----~~~~~~~~~-~~~~~~~~i~iSA  146 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS-------TVDTILVANKAENLRE----FEREVKPEL-YSLGFGEPIPVSA  146 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH-------TCCEEEEEESCCSHHH----HHHHTHHHH-GGGSSCSCEECBT
T ss_pred             cCcEEEEeecccccccccc-cccccccccc-------cccccccchhhhhhhh----hhhHHHHHH-HhcCCCCeEEEec
Confidence            8999999999986544322 2333333322       7899999999998642    222222223 3345577899999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCcc
Q 028647          160 KEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       160 ~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                      ++|.|+++++++|.+.+.++...
T Consensus       147 k~g~gid~L~~~i~~~l~e~~~~  169 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLEEKGLD  169 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999998776543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.91  E-value=8.5e-24  Score=148.71  Aligned_cols=165  Identities=17%  Similarity=0.196  Sum_probs=111.3

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccce--eEEEEEEE-------------------eCCeEEEEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGA--DFLTKEVQ-------------------FEDRLFTLQ   60 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~--~~~~~~~~-------------------~~~~~~~~~   60 (206)
                      +++.++|+++|+.++|||||+++|++.....   ......+.  .+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            5678999999999999999999998643221   11111111  11111111                   112235689


Q ss_pred             EEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCCcccccH
Q 028647           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKIDVDGGNSRVVSE  139 (206)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~~~~~  139 (206)
                      ++|+||+..|.......+..+|++++|+|+.++.......+.+......       ++ ++++++||+|+.+........
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-------~~~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-------GQKNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-------TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-------cCccceeeeecccchhhHHHHHHH
Confidence            9999999999999998899999999999998753222222222222211       43 478899999998754333444


Q ss_pred             HHHHHHHHhcC--CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          140 KKARAWCASKG--NIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       140 ~~~~~~~~~~~--~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      +...++...+.  .++++++||.+|+|+++|++.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            55555555443  47899999999999999999998865

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.91  E-value=9.5e-24  Score=149.54  Aligned_cols=169  Identities=15%  Similarity=0.151  Sum_probs=110.6

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---ccc--eeEEEEEEE------------------------e
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA---TIG--ADFLTKEVQ------------------------F   52 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~---~~~--~~~~~~~~~------------------------~   52 (206)
                      +.+.++.++|+++|+.++|||||+++|++.........   ...  .........                        .
T Consensus         2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (205)
T d2qn6a3           2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDE   81 (205)
T ss_dssp             CCCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSC
T ss_pred             CCCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecc
Confidence            45678889999999999999999999986322110000   000  000000100                        0


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCC-CcEEEEEeCCCCCC
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGNKIDVDG  131 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~  131 (206)
                      ......+.++|+||+..|.......+..+|++|+|+|+.++.........+... ..+      + .|+||++||+|+.+
T Consensus        82 ~~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~-~~~------~i~~iIV~vNK~Dl~~  154 (205)
T d2qn6a3          82 PKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL-GII------GVKNLIIVQNKVDVVS  154 (205)
T ss_dssp             CEEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT------TCCCEEEEEECGGGSC
T ss_pred             ccceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHH-HHc------CCceeeeccccCCCcc
Confidence            112246899999999999999999999999999999998753112222222111 111      4 37899999999987


Q ss_pred             CCcccccHHHHHHHHHhcC--CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          132 GNSRVVSEKKARAWCASKG--NIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ........+...++.....  .++++++||++|.|+++|++.|.++++
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         155 KEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             chHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            5433333444444444332  478999999999999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=8e-24  Score=144.31  Aligned_cols=149  Identities=23%  Similarity=0.281  Sum_probs=102.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh---------ccchhhhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFY   78 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   78 (206)
                      +||+++|.+|+|||||+|+|++.... ....++.+.......+...+  ..+.+||+||....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999976533 33344444444444555666  56789999993211         12233446


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647           79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (206)
                      ..+|++++|+|++++...+...-+ .    ...     ..++++++||.|+.+..    ..++.....  ....+++++|
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~----~~~-----~~~~i~~~~k~d~~~~~----~~~~~~~~~--~~~~~~~~vS  142 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-E----RIK-----NKRYLVVINKVDVVEKI----NEEEIKNKL--GTDRHMVKIS  142 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-H----HHT-----TSSEEEEEEECSSCCCC----CHHHHHHHH--TCSTTEEEEE
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-h----hcc-----cccceeeeeeccccchh----hhHHHHHHh--CCCCcEEEEE
Confidence            789999999999987764433222 1    112     66899999999998752    223333222  2237899999


Q ss_pred             ccCCCCHHHHHHHHHHH
Q 028647          159 AKEGINVEEAFQCIAKN  175 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~  175 (206)
                      |++|+|+++|+++|.+.
T Consensus       143 A~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         143 ALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             GGGTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhc
Confidence            99999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=5.2e-23  Score=143.60  Aligned_cols=160  Identities=23%  Similarity=0.144  Sum_probs=104.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh------------ccc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------QSL   73 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~   73 (206)
                      ..++|+|+|.+|+|||||+|+|++.... ....+..+.......+..++  ..+.++|+||....            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            4699999999999999999999986543 12233333333344455666  45788899994322            223


Q ss_pred             hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH----HHHhc
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA----WCASK  149 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~  149 (206)
                      ....++.+|++++|+|+..+...+ ...++..+...       +.|+|+|+||+|+....  ....++..+    .....
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~~-------~~~~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~  154 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERR-------GRASVVVFNKWDLVVHR--EKRYDEFTKLFREKLYFI  154 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT-------TCEEEEEEECGGGSTTG--GGCHHHHHHHHHHHCGGG
T ss_pred             HHHHHhcCCEEEEeecccccchhh-HHHHHHHHHHc-------CCceeeeccchhhhcch--hhhhhhHHHHHHHHhccc
Confidence            445567899999999998754322 22333322221       78999999999987553  222233222    22234


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          150 GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      +..+++++||++|.|+++|++.|.+.+-.
T Consensus       155 ~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         155 DYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             TTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            55789999999999999999999776643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=2.9e-23  Score=144.55  Aligned_cols=160  Identities=19%  Similarity=0.294  Sum_probs=112.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (206)
                      .++..||+++|.+|||||||+++|.+..+... .++.+.+  ...+...+  ..+.++|+.++..+...........+++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI   84 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc--eeEEEecc--cccccccccchhhhhhHHhhhhccccee
Confidence            35679999999999999999999998876533 2333322  23344555  4578999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---------------
Q 028647           85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---------------  149 (206)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------  149 (206)
                      ++++|.++...+.....+........   ...+.|+++++||.|+....    ...++.+.....               
T Consensus        85 ~~~~d~~d~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~K~D~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~  157 (186)
T d1f6ba_          85 VFLVDCADHERLLESKEELDSLMTDE---TIANVPILILGNKIDRPEAI----SEERLREMFGLYGQTTGKGSVSLKELN  157 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCG---GGTTSCEEEEEECTTSTTCC----CHHHHHHHHTCTTTCCCSSCCCTTTCC
T ss_pred             eeeeeccCccchHHHHHHHHHhhccc---ccCCCceEEEEeccCccccC----CHHHHHHHHhhcccchhhhhhhHHHhh
Confidence            99999999988887766554444322   22378999999999987642    233333332211               


Q ss_pred             -CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          150 -GNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       150 -~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                       ..+++++|||++|+|++++|+||.+++
T Consensus       158 ~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         158 ARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             SCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence             124689999999999999999998754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=4.2e-24  Score=153.63  Aligned_cols=164  Identities=23%  Similarity=0.223  Sum_probs=105.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEE----------------EeCCeEEEEEEEeCCChhhhccch
Q 028647           11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV----------------QFEDRLFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~g~~~~~~~~   74 (206)
                      |+|+|++++|||||+++|++...........+........                .+.....++.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998643221111111111101111                122233568899999999998888


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc-----------------
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-----------------  137 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----------------  137 (206)
                      ...+..+|++|+|+|+.++-..... ..+..+...       ++|+|+|+||+|+........                 
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~-------~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQ-EALNILRMY-------RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ  159 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchh-HHHHHhhcC-------CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHH
Confidence            8888999999999999875443332 222222211       789999999999976542111                 


Q ss_pred             -cHHHHHHHHHh-----------------cCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647          138 -SEKKARAWCAS-----------------KGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE  182 (206)
Q Consensus       138 -~~~~~~~~~~~-----------------~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~  182 (206)
                       ..+...+....                 ....+++++||.+|.|+++|++.|.....+..++
T Consensus       160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         160 KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence             01111111111                 1125789999999999999999998877554443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=4.6e-24  Score=148.95  Aligned_cols=162  Identities=16%  Similarity=0.098  Sum_probs=103.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-------hhhhhccC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GVAFYRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~   81 (206)
                      .+|+++|++|||||||+|+|++........+..+.+.......+.+. ..+.+|||||.......       ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            36999999999999999999987655444444444443444444332 35789999995322211       22334568


Q ss_pred             cEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-CCCcEEEee
Q 028647           82 DCCVLVYDVNSMKSFDNL--NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-GNIPYFETS  158 (206)
Q Consensus        82 d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S  158 (206)
                      +.++++++....+.....  ..+... ..........++|+++|+||+|+.+.      .+....+...+ .+.+++.+|
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~kp~ivv~NK~Dl~~~------~~~~~~~~~~~~~~~~v~~iS  153 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQ-ELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPIS  153 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHH-HHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCS
T ss_pred             hhhhheeeecccccchhhhhhhhhhh-ccchhhhhccCCcchhhccccchHhH------HHHHHHHHHHhccCCcEEEEE
Confidence            999988887654322211  111111 11222233337899999999998753      22333344433 247899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHh
Q 028647          159 AKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       159 ~~~~~~i~~l~~~l~~~~~~  178 (206)
                      |++|.|+++|++.|.+.+.+
T Consensus       154 A~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         154 AVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             SCCSSTTHHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHhhhh
Confidence            99999999999999998744

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=1e-23  Score=146.96  Aligned_cols=159  Identities=20%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------------hhccch
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------------RFQSLG   74 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------------~~~~~~   74 (206)
                      .|+++|.+|||||||+|+|++........+++|.+.  ..+...+    +.++|+||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            689999999999999999998876555555444433  2333333    4689999931               112223


Q ss_pred             hhhhccCcEEEEEEECCChhhHHHHHHH------HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-
Q 028647           75 VAFYRGADCCVLVYDVNSMKSFDNLNNW------REEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-  147 (206)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-  147 (206)
                      ...++.+|++++|+|+............      ...+...+...   ++|+++|+||+|+...  .....+...+... 
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~---~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~  150 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL---DIPTIVAVNKLDKIKN--VQEVINFLAEKFEV  150 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT---TCCEEEEEECGGGCSC--HHHHHHHHHHHHTC
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc---CCCEEEEEeeeehhhh--HHHHHHHHHHHhcc
Confidence            3445779999999999754322111100      00111111111   7899999999998754  2222222111111 


Q ss_pred             hcC--CCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          148 SKG--NIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       148 ~~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      .+.  ...++++||++|.|+++|+++|.+.+.++
T Consensus       151 ~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         151 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            011  13589999999999999999999988653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.4e-23  Score=146.16  Aligned_cols=164  Identities=15%  Similarity=0.211  Sum_probs=111.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+++|..|||||||+++|....++.     .+  .....+....  ..+.+||++|++.+...+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~--~~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAG-----TG--IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCC-----CS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-----cc--EEEEEEEeee--eeeeeeccccccccccchhhcccCCceeee
Confidence            36899999999999999999998766542     22  2223333444  778999999999999999999999999999


Q ss_pred             EEECCChhhHHH-------HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-------------cccccHHHHH---
Q 028647           87 VYDVNSMKSFDN-------LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-------------SRVVSEKKAR---  143 (206)
Q Consensus        87 v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~~~~~~~~~~---  143 (206)
                      |+|.++.+++..       .......+...+......+.|+++++||.|+....             ......++..   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            999998765421       11112222222233333378999999999863210             0011111111   


Q ss_pred             --HHHHhc-----CCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          144 --AWCASK-----GNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       144 --~~~~~~-----~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                        .+....     ..+.+++|||+++.|++++|+.+.+-++++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence              111111     124577899999999999999999888764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=6e-23  Score=144.38  Aligned_cols=160  Identities=19%  Similarity=0.158  Sum_probs=96.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh-------------hhcc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------------RFQS   72 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~   72 (206)
                      ....+|+|+|++|||||||+|+|++...........+.+..........   .+.+.|+++..             .+..
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHh
Confidence            3345899999999999999999997653222222222222222222222   23456666511             1112


Q ss_pred             chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCC
Q 028647           73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI  152 (206)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      .....+..+|++++++|+..+..- ....++..+...       ++|+++|+||+|+.+........+...+.....+..
T Consensus        98 ~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~-------~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          98 TYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY-------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             hhhccccchhhhhhhhhccccccc-cccccccccccc-------cCcceechhhccccCHHHHHHHHHHHHHHhcccCCC
Confidence            223344567999999999865432 122333333221       789999999999876533333444444444444567


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHH
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      +++.+||.+|.|+++++++|.+.+
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHh
Confidence            899999999999999999998876

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.90  E-value=2.3e-23  Score=145.83  Aligned_cols=162  Identities=17%  Similarity=0.100  Sum_probs=110.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC----------------CCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK----------------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (206)
                      ++.++|+++|+.++|||||+++|++.                ........+.+  .......+......+.++|+||+..
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiT--i~~~~~~~~~~~~~~~~iDtPGh~~   78 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGIT--INAAHVEYSTAARHYAHTDCPGHAD   78 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEE--EECEEEEEECSSCEEEEEECSSHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCcc--CCcceEEEEeceeeEEeecCcchHH
Confidence            35799999999999999999999741                11112222333  3333333433345788999999999


Q ss_pred             hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc-cccHHHHHHHHHh
Q 028647           70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-VVSEKKARAWCAS  148 (206)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~  148 (206)
                      |.......+..+|++++|+|+.++..-++. +.+...... .     ..|+||++||+|+..+..+ ....++++.+...
T Consensus        79 f~~~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~-~-----~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~  151 (196)
T d1d2ea3          79 YVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI-G-----VEHVVVYVNKADAVQDSEMVELVELEIRELLTE  151 (196)
T ss_dssp             HHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT-T-----CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHh-c-----CCcEEEEEecccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986443322 222222111 1     3478999999999764322 2233355666655


Q ss_pred             cCC----CcEEEeeccCC----------CCHHHHHHHHHHHH
Q 028647          149 KGN----IPYFETSAKEG----------INVEEAFQCIAKNA  176 (206)
Q Consensus       149 ~~~----~~~~~~S~~~~----------~~i~~l~~~l~~~~  176 (206)
                      ++.    ++++++|+.+|          .++.+|++.|.+++
T Consensus       152 ~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             hCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            543    78999999988          48888888876654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=5.9e-23  Score=144.71  Aligned_cols=163  Identities=15%  Similarity=0.141  Sum_probs=118.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (206)
                      +.+||+++|..|||||||+++|..+.+  .+.||.|.+..  .+..  ..+.+++||++|+..+...+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY--PFDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE--EEEC--SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE--EEec--cceeeeeccccccccccccccccccccceeeE
Confidence            368999999999999999999988775  35677775543  2333  44678999999999999999999999999999


Q ss_pred             EEECCChh-----------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------------cccccHHH
Q 028647           87 VYDVNSMK-----------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--------------SRVVSEKK  141 (206)
Q Consensus        87 v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~  141 (206)
                      ++|.++.+           .++....|...+.....    .+.|+++++||.|+....              ......+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~----~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWF----QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA  150 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGG----SSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhc----cCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHH
Confidence            99998754           34445556555543332    288999999999974321              11122222


Q ss_pred             HHHHHH----hc-----CCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          142 ARAWCA----SK-----GNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       142 ~~~~~~----~~-----~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ...+..    ..     ..+.++++||++|.|++++|+.+.+.+++.
T Consensus       151 ~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         151 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            233221    11     124478999999999999999998888754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=5.4e-23  Score=145.04  Aligned_cols=162  Identities=15%  Similarity=0.207  Sum_probs=107.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (206)
                      .+||+++|.+|||||||+++|.   +...+.||.|...  ..+...+  ..+.+||++|+..+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   3455677777433  3444544  6789999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------------cccccHHHHH
Q 028647           88 YDVNSMKS----------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--------------SRVVSEKKAR  143 (206)
Q Consensus        88 ~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~  143 (206)
                      +|.++..+          ++....++..+   +......+.|+++++||.|+.+..              ......+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~  151 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETI---VNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ  151 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHH---HTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHH---hhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHH
Confidence            99987432          23333333333   333334488999999999984310              0112223333


Q ss_pred             HHHHh----c------CCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          144 AWCAS----K------GNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       144 ~~~~~----~------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ++...    .      ..+.++++||+++.||+++|+.+.+.+++.
T Consensus       152 ~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         152 KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            32221    1      124567899999999999999998877654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7.5e-22  Score=139.95  Aligned_cols=123  Identities=20%  Similarity=0.295  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-cchhhhhccCcEEEEEE
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~v~   88 (206)
                      +|+++|++|||||||+++|+++.+... .++.+.+.....+ ..+..+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999999887654 3455544433332 23445678999999998775 45677789999999999


Q ss_pred             ECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647           89 DVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR  135 (206)
Q Consensus        89 d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (206)
                      |+++..+ +.....++..++...... ..++|++||+||+|++.....
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~-~~~~pilvv~NK~Dl~~a~~~  126 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMAL-KNSPSLLIACNKQDIAMAKSA  126 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTS-TTCCEEEEEEECTTSTTCCCH
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHh-hcCCcEEEEEECcccCCCCCH
Confidence            9998765 344445554443322221 126899999999999876433

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=4.4e-22  Score=140.37  Aligned_cols=146  Identities=16%  Similarity=0.106  Sum_probs=97.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC------C--C---------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK------K--F---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~------~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (206)
                      +++++|+++|++++|||||+++|+..      .  .         ........+.+.....+.+++  ..+.|+||||+.
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~   78 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA   78 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCch
Confidence            46799999999999999999999631      0  0         011111334444444555555  567899999999


Q ss_pred             hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHH
Q 028647           69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~  146 (206)
                      .|.......+..+|++|+|+|+.++...+....|.. ....       ++| ++|++||+|+.+...+ ....++++.+.
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~~-------gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l  150 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  150 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHHc-------CCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999998765544333322 2111       666 7788999998764211 22334555555


Q ss_pred             HhcC----CCcEEEeeccC
Q 028647          147 ASKG----NIPYFETSAKE  161 (206)
Q Consensus       147 ~~~~----~~~~~~~S~~~  161 (206)
                      ..++    ..++++.|+..
T Consensus       151 ~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         151 NQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHTTSCTTTSCEEECCHHH
T ss_pred             HhcCCCcccceeeeeechh
Confidence            5433    36788888753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=4.9e-21  Score=132.58  Aligned_cols=161  Identities=15%  Similarity=0.136  Sum_probs=105.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce-eEEEEEEEeCCeEEEEEEEeCCChh---------hhccchh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-DFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~   75 (206)
                      .+.-.|+++|.+|+|||||+|+|++...........+. ...........  ..+..+|++|..         .......
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccc
Confidence            45567999999999999999999987654332222222 22223333334  345567888732         1222233


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .....+++++++.|..+.....  ..+...+..   .    ..|.++|+||.|....  .....+..+.+...++..+++
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~~---~----~~~~i~v~~k~d~~~~--~~~~~~~~~~~~~~~~~~~~~  149 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPDD--EMVLNKLRE---G----KAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIV  149 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHHH--HHHHHHHHS---S----SSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEE
T ss_pred             cchhhcceeEEEEecCccchhH--HHHHHHhhh---c----cCceeeeeeeeeccch--hhhhhhHhhhhhhhcCCCCEE
Confidence            3345678888888887643222  222222221   1    5689999999998765  444456666777778878999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHHhc
Q 028647          156 ETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       156 ~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                      ++||++|.|+++|++.|.+++.+.
T Consensus       150 ~vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         150 PISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             ECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             EEeCcCCCCHHHHHHHHHHhCCCC
Confidence            999999999999999998877443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=6.2e-21  Score=136.40  Aligned_cols=166  Identities=14%  Similarity=0.149  Sum_probs=113.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (206)
                      +..+||+++|..|||||||+++|....+    .||.|.  ....+.+++  +.+.+||++|+..+...|..++..+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~--~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGI--FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSC--EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCe--EEEEEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence            4568999999999999999999976543    355553  334455665  67899999999999999999999999999


Q ss_pred             EEEECCChhh-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc------------------------
Q 028647           86 LVYDVNSMKS-------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS------------------------  134 (206)
Q Consensus        86 ~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------------------  134 (206)
                      +++|.++.+.       ...+.+....+...+......++|++|++||+|+.+..-                        
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            9999986321       112222333333334444445899999999999854210                        


Q ss_pred             ----ccccHHHHHH-----HHHhc-------CCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647          135 ----RVVSEKKARA-----WCASK-------GNIPYFETSAKEGINVEEAFQCIAKNALKS  179 (206)
Q Consensus       135 ----~~~~~~~~~~-----~~~~~-------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~  179 (206)
                          .....+.+..     |.+..       ..+...++||.++.+++.+|+.+.+.+++.
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                0001222222     22111       113356899999999999998877666653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.83  E-value=6.2e-20  Score=130.59  Aligned_cols=154  Identities=18%  Similarity=0.206  Sum_probs=101.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CCCCCccceeEEEEEE
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS---------------------------------NQYKATIGADFLTKEV   50 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~   50 (206)
                      .++..++|+++|+.++|||||+.+|+.....                                 .....+.+.+.....+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            4677899999999999999999999632110                                 0001111222222233


Q ss_pred             EeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q 028647           51 QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDV  129 (206)
Q Consensus        51 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  129 (206)
                      ...+  ..+.++|+||+..|.......+..+|++++|+|+.....-+....+ . +...+      +++ +|+++||+|+
T Consensus        85 ~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~-~~~~~------gv~~iiv~vNK~D~  154 (222)
T d1zunb3          85 STAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-Y-IASLL------GIKHIVVAINKMDL  154 (222)
T ss_dssp             ECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-H-HHHHT------TCCEEEEEEECTTT
T ss_pred             eccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-H-HHHHc------CCCEEEEEEEcccc
Confidence            3334  4688999999999999999999999999999999876443333222 1 11111      555 8899999999


Q ss_pred             CCCCcc--cccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647          130 DGGNSR--VVSEKKARAWCASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       130 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      .+....  ....+++..+....+    .++++++||.+|+|+.+
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         155 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            875322  122234455555543    25789999999999843

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.2e-19  Score=130.50  Aligned_cols=154  Identities=16%  Similarity=0.216  Sum_probs=103.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEe
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQF   52 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   52 (206)
                      +.++.++|+++|+.++|||||+.+|+...-                               ........+.+.....+.+
T Consensus         2 ~~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~   81 (239)
T d1f60a3           2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET   81 (239)
T ss_dssp             CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred             CCCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc
Confidence            456779999999999999999999863110                               0112233344444445555


Q ss_pred             CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhH-------HHHHHHHHHHHhhcCCCCCCCCc-EEEEE
Q 028647           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSF-------DNLNNWREEFLIQASPSDPDNFP-FVVLG  124 (206)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~~~~p-~ivv~  124 (206)
                      .+  .++.|+|+||+..|...+...+..+|++|+|+|+.....-       +....+. .. ..+      ++| +|+++
T Consensus        82 ~~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~-~~~------gv~~iiv~i  151 (239)
T d1f60a3          82 PK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LA-FTL------GVRQLIVAV  151 (239)
T ss_dssp             SS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HH-HHT------TCCEEEEEE
T ss_pred             CC--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HH-HHc------CCCeEEEEE
Confidence            55  6789999999999999999999999999999999864210       1111111 11 111      665 78899


Q ss_pred             eCCCCCCCCcc--cccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647          125 NKIDVDGGNSR--VVSEKKARAWCASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       125 nK~Dl~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      ||+|+.+....  ....+++..+....+    .++++++|+..|+|+-+
T Consensus       152 NKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         152 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            99999875422  122344455555443    36789999999998644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=6.2e-20  Score=129.99  Aligned_cols=122  Identities=14%  Similarity=0.175  Sum_probs=84.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhh----hccCc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF----YRGAD   82 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d   82 (206)
                      +..+|+++|++|||||||+|+|++..+.    ++++.......+..++  ..+.+||+||+..+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            3568999999999999999999987654    3333333333333344  457899999987665554443    34568


Q ss_pred             EEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647           83 CCVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS  134 (206)
Q Consensus        83 ~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  134 (206)
                      .+++++|..+ ..+++....|+..+..........++|+++|+||+|+.+...
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            8999998764 566666666665544333333334899999999999987643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=6.1e-19  Score=122.53  Aligned_cols=165  Identities=18%  Similarity=0.073  Sum_probs=89.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh-------hhccc---
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RFQSL---   73 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~---   73 (206)
                      +.+..++|+++|.+|+|||||+|+|++.+.........+................+...+.++..       .....   
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence            34667999999999999999999999876553333332222222222222222222222222211       11111   


Q ss_pred             hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC-CC
Q 028647           74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG-NI  152 (206)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~  152 (206)
                      ........+.++.+.+........ ...++..+...       ..++++++||+|+..........+..++....+. ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~  163 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVDS-------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  163 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT-------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             hhhhhhheeEEEEeecccccchhH-HHHHHHHhhhc-------cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence            111223345566666666543322 22333333222       6689999999999875444444444454444443 46


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHH
Q 028647          153 PYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       153 ~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      +++++||++|.|+++|++.|.+.+
T Consensus       164 ~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         164 QVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHh
Confidence            799999999999999999987654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.78  E-value=5.3e-19  Score=127.69  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=85.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEEeC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   53 (206)
                      .++.++|+++|+.++|||||+.+|+...-.                               .......+.+.....+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            356789999999999999999999531100                               0111111111112222333


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD------NLNNWREEFLIQASPSDPDNFP-FVVLGNK  126 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK  126 (206)
                      +  ..+.++|+||+..|.......+..+|++++|+|+.....-.      +....+. +...+      ++| +++++||
T Consensus       101 ~--~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~-l~~~~------~i~~iiv~iNK  171 (245)
T d1r5ba3         101 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQ------GINHLVVVINK  171 (245)
T ss_dssp             S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHT------TCSSEEEEEEC
T ss_pred             c--ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHH-HHHHc------CCCeEEEEEEc
Confidence            3  46899999999999999999999999999999998742110      1111111 11111      555 8899999


Q ss_pred             CCCCCCCccccc----HHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHH
Q 028647          127 IDVDGGNSRVVS----EKKARAWCASKG------NIPYFETSAKEGINVEEAFQ  170 (206)
Q Consensus       127 ~Dl~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~  170 (206)
                      +|+......+..    .+++..+.....      .++++++||++|+|+.++++
T Consensus       172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            999764322221    222333323321      25799999999999976543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=4.7e-18  Score=123.81  Aligned_cols=117  Identities=19%  Similarity=0.260  Sum_probs=84.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CCC----------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ++..||+++|+.++|||||+.+++..  ...                .......+.......+.+++  .++.|+||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCch
Confidence            34568999999999999999998631  100                11222223333344455555  56899999999


Q ss_pred             hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ..|.......++-+|++|+|+|+.++-...+..-|.. ..    ..   ++|.++++||+|..+.
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~----~~---~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AE----KY---KVPRIAFANKMDKTGA  138 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HH----TT---TCCEEEEEECTTSTTC
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HH----Hc---CCCEEEEEeccccccc
Confidence            9999999999999999999999998765555444422 22    11   8899999999999774

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=7.4e-19  Score=125.61  Aligned_cols=154  Identities=15%  Similarity=0.196  Sum_probs=95.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEeCC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (206)
                      ++.++|+++|+.++|||||+.+|+...-                               ........+.......+..++
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~   80 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   80 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence            3579999999999999999998853110                               011122222222223333333


Q ss_pred             eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD------NLNNWREEFLIQASPSDPDNFPFVVLGNKID  128 (206)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (206)
                        ..+.++|+||+..|.......+.-+|++|+|+|+.+...-.      +..+.+. +...+.     ..++|+++||+|
T Consensus        81 --~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~-~~~~~~-----~~~iIv~iNK~D  152 (224)
T d1jnya3          81 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHII-LAKTMG-----LDQLIVAVNKMD  152 (224)
T ss_dssp             --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHH-HHHHTT-----CTTCEEEEECGG
T ss_pred             --ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHH-HHHHhC-----CCceEEEEEccc
Confidence              67899999999999999999999999999999999753211      1111111 111111     336889999999


Q ss_pred             CCCCCcccccH----HHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647          129 VDGGNSRVVSE----KKARAWCASKG----NIPYFETSAKEGINVEE  167 (206)
Q Consensus       129 l~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~S~~~~~~i~~  167 (206)
                      +..........    +.+..+...++    .++++++||..|.|+.+
T Consensus       153 ~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         153 LTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             GSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            87643222222    23333444332    36789999999998753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.73  E-value=8.6e-17  Score=116.80  Aligned_cols=112  Identities=17%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-C-----------------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFS-N-----------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (206)
                      .+|+|+|+.++|||||+.+|+...-. .                 ......+.......+.+++  ..+.++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            58999999999999999998631100 0                 0112233444445556666  56889999999999


Q ss_pred             ccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      .......++-+|++++|+|+.++-......-|.. ....       ++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~-~~~~-------~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWTV-AERL-------GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHHh-hhhc-------cccccccccccccc
Confidence            9999999999999999999998765555444432 2221       78999999999974

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=7.6e-17  Score=120.82  Aligned_cols=122  Identities=18%  Similarity=0.209  Sum_probs=83.9

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcCC------------C----CCCCCCccceeEEEEEEEe--------------C
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK------------F----SNQYKATIGADFLTKEVQF--------------E   53 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~------------~----~~~~~~~~~~~~~~~~~~~--------------~   53 (206)
                      ..++..+|+|+|+.++|||||+.+|+...            +    ..+.+...+.......+.+              +
T Consensus        13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~   92 (341)
T d1n0ua2          13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   92 (341)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccc
Confidence            44556689999999999999999996210            0    1111222222222222211              3


Q ss_pred             CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN  133 (206)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  133 (206)
                      +..+.+.++||||+..|.......++-+|++++|+|+..+-..++..-|.... ..       ++|+++++||+|....+
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~~-------~~p~i~viNKiDr~~~e  164 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE-------RIKPVVVINKVDRALLE  164 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT-------TCEEEEEEECHHHHHHT
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-Hc-------CCCeEEEEECccccccc
Confidence            45678999999999999999999999999999999999876655544433322 11       78999999999976543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=6.8e-16  Score=118.82  Aligned_cols=161  Identities=14%  Similarity=0.140  Sum_probs=92.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CccceeEEEEEEEeCCeEEEEEEEeCCChhhhccch-----h
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-----ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-----V   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~   75 (206)
                      ..+++|+|+|.+|+|||||+|.|.+........     ..++.+.  ..+...+. -.+.+|||||........     .
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~  130 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEK  130 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSC-TTEEEEECCCGGGSSCCHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccCC-CeEEEEeCCCcccccccHHHHHHH
Confidence            357999999999999999999999754322111     1112222  22222221 246799999954332222     2


Q ss_pred             hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----C----cccccHHHHHH--
Q 028647           76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-----N----SRVVSEKKARA--  144 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~----~~~~~~~~~~~--  144 (206)
                      ..+..+|.++++.|..-.+.-.   .++..+...       ++|+++|+||+|....     .    ......+++++  
T Consensus       131 ~~~~~~d~~l~~~~~~~~~~d~---~l~~~l~~~-------~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~  200 (400)
T d1tq4a_         131 MKFYEYDFFIIISATRFKKNDI---DIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC  200 (400)
T ss_dssp             TTGGGCSEEEEEESSCCCHHHH---HHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred             hhhhcceEEEEecCCCCCHHHH---HHHHHHHHc-------CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHH
Confidence            2345689988888754332222   223333222       7899999999996311     0    01111222221  


Q ss_pred             --HHHh--cCCCcEEEeeccC--CCCHHHHHHHHHHHHHhc
Q 028647          145 --WCAS--KGNIPYFETSAKE--GINVEEAFQCIAKNALKS  179 (206)
Q Consensus       145 --~~~~--~~~~~~~~~S~~~--~~~i~~l~~~l~~~~~~~  179 (206)
                        ....  ....+++.+|..+  ..++.+|.+.+.+.+...
T Consensus       201 ~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         201 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence              1222  2235688888765  348999999998877554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.60  E-value=1.1e-14  Score=105.81  Aligned_cols=124  Identities=15%  Similarity=0.106  Sum_probs=76.6

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-------chhh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVA   76 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~   76 (206)
                      ....++|+++|.+|+|||||+|.+++..... ...+..+...........+  ..+.++||||......       ....
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            4567999999999999999999999876543 2333444444455556666  4688999999422111       1111


Q ss_pred             --hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647           77 --FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus        77 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                        .....|++++|++++...--......+..+...+...-  -.+++||+||.|....
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~--~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI--WNKAIVALTHAQFSPP  162 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGG--GGGEEEEEECCSCCCG
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhh--hhCEEEEEECcccCCc
Confidence              12457899999988753211112222333333322100  2479999999998764

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.59  E-value=9.7e-16  Score=110.45  Aligned_cols=113  Identities=12%  Similarity=-0.029  Sum_probs=67.8

Q ss_pred             EEEEEeCCChhhhccchhhhh-----ccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647           58 TLQIWDTAGQERFQSLGVAFY-----RGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV  129 (206)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~-----~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  129 (206)
                      .+.++|+||+...........     ...+.+++++|+..   +.................      ..|.++|+||+|+
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~------~~~~ivvinK~D~  169 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKVDL  169 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCGGG
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh------CCCceeeeecccc
Confidence            378899999876544332221     23568999999864   333222221111111111      6799999999999


Q ss_pred             CCCCcccccHH-------------------------HHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647          130 DGGNSRVVSEK-------------------------KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA  176 (206)
Q Consensus       130 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~  176 (206)
                      ..........+                         .........+.++++++||++|+|+++|++.|.+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         170 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            87432111000                         000011123457899999999999999999988764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2e-14  Score=107.26  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=55.0

Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc------C
Q 028647           77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK------G  150 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~  150 (206)
                      +...+|.+++|.++...+..+.....+   +.         ++-++|+||+|+...........+.......+      .
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi---~e---------~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w  231 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGL---ME---------VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEW  231 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHH---HH---------HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTB
T ss_pred             hhhccceEEEEecCCCchhhhhhchhh---hc---------cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCC
Confidence            456699999999887655443333322   22         24489999999876432223333333333222      1


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647          151 NIPYFETSAKEGINVEEAFQCIAKNAL  177 (206)
Q Consensus       151 ~~~~~~~S~~~~~~i~~l~~~l~~~~~  177 (206)
                      ..+++.+||.+|+|+++|++.|.++.-
T Consensus       232 ~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         232 QPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            257999999999999999999987653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.47  E-value=2.3e-13  Score=101.42  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=61.7

Q ss_pred             EEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc
Q 028647           58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV  137 (206)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  137 (206)
                      .+.|+.|.|...   .-......+|..++|..+..++..+....   .++         .++-++|+||+|+.+..  ..
T Consensus       145 d~iiiETVG~gq---~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~---gil---------E~aDi~vvNKaD~~~~~--~~  207 (323)
T d2qm8a1         145 DVILVETVGVGQ---SETAVADLTDFFLVLMLPGAGDELQGIKK---GIF---------ELADMIAVNKADDGDGE--RR  207 (323)
T ss_dssp             CEEEEEECSSSS---CHHHHHTTSSEEEEEECSCC------CCT---THH---------HHCSEEEEECCSTTCCH--HH
T ss_pred             CeEEEeehhhhh---hhhhhhcccceEEEEeeccchhhhhhhhh---hHh---------hhhheeeEeccccccch--HH
Confidence            356677776321   11123345999999999987755443322   122         23559999999987652  22


Q ss_pred             cHHHHHHHHHh---c------CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          138 SEKKARAWCAS---K------GNIPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       138 ~~~~~~~~~~~---~------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ..+....+...   +      ...+++.+|+.+|+|+++++++|.++.-.
T Consensus       208 ~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         208 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            22221122211   1      23689999999999999999999876543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=6.3e-13  Score=98.29  Aligned_cols=91  Identities=20%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             CcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCC
Q 028647            2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTA   65 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~   65 (206)
                      ..+....++|+++|.|+||||||++.+++... .....|++|.++....+.+.+.               ...+.+.|.|
T Consensus         4 ~~~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~Dva   83 (296)
T d1ni3a1           4 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA   83 (296)
T ss_dssp             CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred             cCCCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecc
Confidence            34555679999999999999999999997654 3445566666555555544331               2368899999


Q ss_pred             Chh-------hhccchhhhhccCcEEEEEEECCC
Q 028647           66 GQE-------RFQSLGVAFYRGADCCVLVYDVNS   92 (206)
Q Consensus        66 g~~-------~~~~~~~~~~~~~d~~i~v~d~~~   92 (206)
                      |.-       .........++.+|++++|+|+.+
T Consensus        84 GLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          84 GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             GGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            822       222345556789999999999854

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.41  E-value=3.3e-12  Score=93.52  Aligned_cols=84  Identities=24%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe------------E---EEEEEEeCCCh-----
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR------------L---FTLQIWDTAGQ-----   67 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~i~D~~g~-----   67 (206)
                      .++|+++|.|+||||||++++++........|++|..+....+.+.+.            .   ..+.+.|.||-     
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999988766555666665555555544332            1   25889999992     


Q ss_pred             --hhhccchhhhhccCcEEEEEEECC
Q 028647           68 --ERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        68 --~~~~~~~~~~~~~~d~~i~v~d~~   91 (206)
                        ..........++++|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence              223334556678899999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=4.3e-11  Score=88.42  Aligned_cols=118  Identities=17%  Similarity=0.251  Sum_probs=70.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEe----------CC----------------------
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQF----------ED----------------------   54 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~----------~~----------------------   54 (206)
                      ..+|+|+|..++|||||+|.|++..+. ....+++..........-          .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            457999999999999999999998864 333443322111111100          00                      


Q ss_pred             ---------e--------EEEEEEEeCCChhh-------------hccchhhhhccCcE-EEEEEECCChhhHHHHHHHH
Q 028647           55 ---------R--------LFTLQIWDTAGQER-------------FQSLGVAFYRGADC-CVLVYDVNSMKSFDNLNNWR  103 (206)
Q Consensus        55 ---------~--------~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~  103 (206)
                               .        ...+.++|+||...             .......++...+. +++|.++....+......+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                     0        01278999999321             12334556666664 55666666544434444555


Q ss_pred             HHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647          104 EEFLIQASPSDPDNFPFVVLGNKIDVDGG  132 (206)
Q Consensus       104 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  132 (206)
                      ..+...       ..++++|+||+|+...
T Consensus       186 ~~~~~~-------~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEVDPQ-------GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHCTT-------CSSEEEEEECGGGSCT
T ss_pred             HHhCcC-------CCceeeEEeccccccc
Confidence            444221       5689999999998764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=1.4e-11  Score=92.01  Aligned_cols=84  Identities=14%  Similarity=0.100  Sum_probs=46.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE----------------------eCCeEEEEEEEeCCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ----------------------FEDRLFTLQIWDTAG   66 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~D~~g   66 (206)
                      ++|+++|.||||||||+|.|++........|++|.++......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998776555555555433221110                      012335789999999


Q ss_pred             hhh-------hccchhhhhccCcEEEEEEECCC
Q 028647           67 QER-------FQSLGVAFYRGADCCVLVYDVNS   92 (206)
Q Consensus        67 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   92 (206)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            321       22233345678999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.14  E-value=1.1e-10  Score=86.46  Aligned_cols=27  Identities=26%  Similarity=0.641  Sum_probs=24.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNKKFS   34 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~   34 (206)
                      ..+|+|+|..++|||||+|.|++..+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            357999999999999999999988764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.69  E-value=1.2e-08  Score=73.98  Aligned_cols=57  Identities=25%  Similarity=0.430  Sum_probs=36.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (206)
                      ...++|+|+|.||||||||+|+|.+.... ....|+.|.+.  ..+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~--~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccc--eEEECCC---CeEEecCCCc
Confidence            45799999999999999999999987654 33344444332  2333333   3689999994

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=5e-08  Score=67.69  Aligned_cols=27  Identities=19%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +...+..|+++|++||||||.+.+|..
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            446678899999999999999888763

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=1.1e-06  Score=61.54  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-.+|.|.-|||||||+++++..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            345789999999999999999874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.57  E-value=1.3e-07  Score=65.36  Aligned_cols=92  Identities=15%  Similarity=0.120  Sum_probs=51.1

Q ss_pred             EEEEEEeCCChhhhccc----hhhh---h-----ccCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 028647           57 FTLQIWDTAGQERFQSL----GVAF---Y-----RGADCCVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVL  123 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv  123 (206)
                      ..+.++||+|.......    ...+   .     ...+-+++|+|++. .+....+......+          + +--++
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI  157 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV----------G-LTGVI  157 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH----------C-CSEEE
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc----------C-CceEE
Confidence            35789999994433322    1111   1     13578899999875 44444444444433          2 23568


Q ss_pred             EeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647          124 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA  168 (206)
Q Consensus       124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l  168 (206)
                      +||.|-...      .-.+..+....+ .|+.+++.  |++.+++
T Consensus       158 ~TKlDet~~------~G~~l~~~~~~~-~Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         158 VTKLDGTAK------GGVLIPIVRTLK-VPIKFVGV--GEGPDDL  193 (207)
T ss_dssp             EECTTSSCC------CTTHHHHHHHHC-CCEEEEEC--SSSTTCE
T ss_pred             EeccCCCCC------ccHHHHHHHHHC-CCEEEEeC--CCChHhC
Confidence            999996543      222333444555 77777763  4545443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.57  E-value=2.1e-07  Score=64.38  Aligned_cols=91  Identities=20%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             EEEEEEeCCChhhhcc------chhhh--hccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647           57 FTLQIWDTAGQERFQS------LGVAF--YRGADCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI  127 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (206)
                      ..+.++||+|...+..      ....+  ....+-+++|++++.. +..+........    .      + +--+++||.
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~----~------~-~~~lI~TKl  163 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA----S------K-IGTIIITKM  163 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH----C------T-TEEEEEECT
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc----c------C-cceEEEecc
Confidence            3578999999543321      11111  1236788999998754 333333222221    1      2 234679999


Q ss_pred             CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647          128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      |-..      ..-.+..+....+ .|+.+++  .|+++++
T Consensus       164 Det~------~~G~~l~~~~~~~-lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         164 DGTA------KGGGALSAVAATG-ATIKFIG--TGEKIDE  194 (211)
T ss_dssp             TSCS------CHHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred             cCCC------cccHHHHHHHHHC-cCEEEEe--CCCCccc
Confidence            9543      3445555566665 8888877  4666544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=2.7e-07  Score=64.24  Aligned_cols=85  Identities=24%  Similarity=0.241  Sum_probs=60.7

Q ss_pred             hhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-CCCcE
Q 028647           77 FYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-GNIPY  154 (206)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  154 (206)
                      .+.+.|.+++|+++.+|+ +...+.+++-.....       ++|.+||+||+||.+..    ..+...++...+ ...++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~-------~i~pvIvlnK~DL~~~~----~~~~~~~~~~~~~~~~~v   75 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-------ELETVMVINKMDLYDED----DLRKVRELEEIYSGLYPI   75 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-------TCEEEEEECCGGGCCHH----HHHHHHHHHHHHTTTSCE
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEeCcccCCHH----HHHHHHHhhcccccceeE
Confidence            467899999999998764 445556665544332       88999999999997631    223333344333 23689


Q ss_pred             EEeeccCCCCHHHHHHHH
Q 028647          155 FETSAKEGINVEEAFQCI  172 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l  172 (206)
                      +.+|++++.|++++..++
T Consensus        76 ~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          76 VKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEeccccchhHhhHHHHh
Confidence            999999999999988776

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=2.8e-08  Score=69.51  Aligned_cols=89  Identities=13%  Similarity=0.070  Sum_probs=61.1

Q ss_pred             hhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647           76 AFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY  154 (206)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      -.+.+.|.+++|+++.+|+ +...+.+++-.....       +++.+||+||+||.++.......+...+.....+ .++
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~-------~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~v   77 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN-------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YDV   77 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT-------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CCE
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEecccccccHHHHHHHHHHHHHHhhcc-ccc
Confidence            3467899999999998764 455566665544322       8899999999999875222222222333334445 899


Q ss_pred             EEeeccCCCCHHHHHHHH
Q 028647          155 FETSAKEGINVEEAFQCI  172 (206)
Q Consensus       155 ~~~S~~~~~~i~~l~~~l  172 (206)
                      +.+|+.++.|++++..++
T Consensus        78 ~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          78 YLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             EECCHHHHTTCTTTGGGG
T ss_pred             eeeecCChhHHHHHHHhh
Confidence            999999999998876654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.8e-07  Score=63.62  Aligned_cols=91  Identities=18%  Similarity=0.129  Sum_probs=50.6

Q ss_pred             EEEEEEeCCChhhhcc----chh---hhhc-----cCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 028647           57 FTLQIWDTAGQERFQS----LGV---AFYR-----GADCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVL  123 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~----~~~---~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv  123 (206)
                      +.+.++||+|......    ...   ..++     ..+-.++|+|+... +....+......+          + +--++
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI  160 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV----------G-LTGIT  160 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS----------C-CCEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc----------C-CceEE
Confidence            3578999999432221    111   1222     25688999998753 3333333333222          2 34678


Q ss_pred             EeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647          124 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE  167 (206)
Q Consensus       124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (206)
                      +||.|-...      .-.+.......+ .|+.+++  .|+++++
T Consensus       161 lTKlDe~~~------~G~~l~~~~~~~-~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         161 LTKLDGTAK------GGVIFSVADQFG-IPIRYIG--VGERIED  195 (211)
T ss_dssp             EECCTTCTT------TTHHHHHHHHHC-CCEEEEE--CSSSGGG
T ss_pred             EeecCCCCC------ccHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence            999995443      233344455555 7788777  5655544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=5.2e-08  Score=67.92  Aligned_cols=59  Identities=22%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (206)
                      ..+++|++|+|||||+|+|..+....      ....+..++.....+.+.+..   .++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            56899999999999999998653221      111111122223334454433   489999965443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=2.1e-07  Score=67.29  Aligned_cols=92  Identities=16%  Similarity=0.118  Sum_probs=63.6

Q ss_pred             cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647           72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN  151 (206)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ......++.+|++++|+|+.+|.+...  ..+..+   ..     +.|.|+|+||+|+.+.   .. .+...++....+ 
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~---~~-----~Kp~IlVlNK~DLv~~---~~-~~~w~~~f~~~~-   71 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDI---LK-----NKPRIMLLNKADKADA---AV-TQQWKEHFENQG-   71 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHH---CS-----SSCEEEEEECGGGSCH---HH-HHHHHHHHHTTT-
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHH---Hc-----CCCeEEEEECccCCch---HH-HHHHHHHHHhcC-
Confidence            345567889999999999998866442  222233   22     6799999999999863   22 222333333333 


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647          152 IPYFETSAKEGINVEEAFQCIAKNALK  178 (206)
Q Consensus       152 ~~~~~~S~~~~~~i~~l~~~l~~~~~~  178 (206)
                      ...+.+|+.++.+..++...+.+.+.+
T Consensus        72 ~~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          72 IRSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             CccceeecccCCCccccchhhhhhhhh
Confidence            779999999999988888777666554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.36  E-value=1.6e-06  Score=59.69  Aligned_cols=84  Identities=20%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             EEEEEeCCChhhhccc----hhhh--hccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647           58 TLQIWDTAGQERFQSL----GVAF--YRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD  130 (206)
Q Consensus        58 ~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  130 (206)
                      .+.++||+|.......    +..+  ..+.+-+++|.|+..+. ..+.+    ..+.....       .--++++|.|-.
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~----~~f~~~~~-------~~~~I~TKlDe~  162 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA----RAFDEKVG-------VTGLVLTKLDGD  162 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH----HHHHHHTC-------CCEEEEECGGGC
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHH----HHHHhhCC-------CCeeEEeecCcc
Confidence            5789999994433322    1222  23578899999997653 23222    22222221       235789999954


Q ss_pred             CCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647          131 GGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      ..      .-.+..+....+ .|+.+++.
T Consensus       163 ~~------~G~~l~~~~~~~-~Pi~~i~~  184 (207)
T d1ls1a2         163 AR------GGAALSARHVTG-KPIYFAGV  184 (207)
T ss_dssp             SS------CHHHHHHHHHHC-CCEEEEC-
T ss_pred             cc------chHHHHHHHHHC-CCEEEEeC
Confidence            32      334444555565 77766653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=8.9e-08  Score=66.94  Aligned_cols=22  Identities=41%  Similarity=0.685  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++|++|+|||||+|+|..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4579999999999999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.05  E-value=1.1e-06  Score=58.94  Aligned_cols=22  Identities=50%  Similarity=0.921  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      +||+++|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999886

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.91  E-value=2.8e-06  Score=56.59  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=23.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +++.++|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            356789999999999999999998753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.86  E-value=4.7e-06  Score=56.74  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=22.8

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.++..|+|+|+|||||||+.++|...
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            445578899999999999999998753

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.84  E-value=3.4e-06  Score=56.73  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+|+|.|++|||||||++.|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.83  E-value=3.8e-06  Score=55.77  Aligned_cols=24  Identities=38%  Similarity=0.666  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+++|+|||||||+.+.|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999998653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=5.8e-06  Score=54.75  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999985

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.79  E-value=5.8e-06  Score=55.55  Aligned_cols=23  Identities=22%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999888653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.78  E-value=4.6e-06  Score=56.57  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+++|+|+|+|||||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3588999999999999999988754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.74  E-value=7.7e-06  Score=55.46  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.++|+++|+|||||||+...|...
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHH
Confidence            4589999999999999999988753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.73  E-value=7.9e-06  Score=55.04  Aligned_cols=23  Identities=26%  Similarity=0.631  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.72  E-value=8.6e-06  Score=55.30  Aligned_cols=26  Identities=27%  Similarity=0.539  Sum_probs=22.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+.++|+|+|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.71  E-value=9.1e-06  Score=54.63  Aligned_cols=23  Identities=30%  Similarity=0.622  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+|+|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.1e-05  Score=54.12  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+|+|+|||||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999888653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.65  E-value=1.3e-05  Score=52.03  Aligned_cols=21  Identities=24%  Similarity=0.667  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++.|+|||||||+.++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.4e-05  Score=54.33  Aligned_cols=61  Identities=28%  Similarity=0.265  Sum_probs=39.4

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEEEEEEe-CCeEEEEEEEeCCCh
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-----YKATIGADFLTKEVQF-EDRLFTLQIWDTAGQ   67 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~   67 (206)
                      ..+..-|.|+|+.++|||+|+|.|++....-.     ...|.|.  ......+ .+....+.++||.|.
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Gi--w~~~~~~~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI--WMWCVPHPKKPGHILVLLDTEGL   95 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE--EEEEEECSSSTTCEEEEEEECCB
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCce--EEEEeeccCCCCceEEEEecccc
Confidence            45677899999999999999999997653211     1223332  2222222 333346788999994

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.63  E-value=1.8e-05  Score=52.68  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=23.0

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +....+.|.++|.|||||||+.+.|..
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            445678999999999999999988864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.7e-05  Score=53.88  Aligned_cols=23  Identities=35%  Similarity=0.548  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.6e-05  Score=53.42  Aligned_cols=24  Identities=17%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|+|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999998753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.59  E-value=1.8e-05  Score=52.38  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.57  E-value=1.9e-05  Score=52.23  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|++.|+|||||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1e-05  Score=54.42  Aligned_cols=21  Identities=33%  Similarity=0.773  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=3.3e-05  Score=51.51  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+.-|+++|.|||||||+..++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567889999999999999998864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.7e-05  Score=50.95  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=3.1e-05  Score=53.01  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.-|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999985

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.8e-05  Score=51.86  Aligned_cols=21  Identities=38%  Similarity=0.691  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.45  E-value=1.8e-05  Score=53.84  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=22.0

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+.--|+|+|+|||||||+...|...
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            344456899999999999999998763

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.39  E-value=4.3e-05  Score=51.63  Aligned_cols=25  Identities=40%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++-|+|-|++|||||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4467899999999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.36  E-value=5e-05  Score=49.95  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.34  E-value=5.5e-05  Score=50.54  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -|+|.|++||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.33  E-value=6.3e-05  Score=49.78  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|++.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999888754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=5.2e-05  Score=50.02  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+++|++||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999998887643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=5.8e-05  Score=50.86  Aligned_cols=21  Identities=33%  Similarity=0.725  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=5.7e-05  Score=51.26  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-.|+++|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998763

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=6.1e-05  Score=49.68  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --++++|++||||||+.+.|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34677999999999999998753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=6.2e-05  Score=52.82  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++|||||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999988764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.28  E-value=6.9e-05  Score=50.24  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.25  E-value=7.8e-05  Score=50.86  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999998643

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=9e-05  Score=50.90  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      |+-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            58899999999999999998854

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.24  E-value=8.1e-05  Score=49.89  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=17.4

Q ss_pred             EE-EEEcCCCCCHHHHHHHHhc
Q 028647           10 KV-IILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i-~viG~~~~GKStli~~l~~   30 (206)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45 4579999999999998864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=8.5e-05  Score=51.70  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4689999999999999988753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.23  E-value=8.8e-05  Score=52.10  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|||||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999988753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.23  E-value=8.6e-05  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|++.|++||||||+.+.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3667799999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.22  E-value=8.3e-05  Score=51.72  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4689999999999999977764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00081  Score=47.02  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..++++.|++|+||||+++.+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999988764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.21  E-value=9.1e-05  Score=52.38  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5899999999999999988753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=4.7e-05  Score=51.35  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.|.++|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999998864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=9.9e-05  Score=49.87  Aligned_cols=21  Identities=33%  Similarity=0.729  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+||+|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.19  E-value=0.0001  Score=52.41  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+--|++.|+||+|||||.+.+.+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999998764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.00046  Score=44.84  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      +..-|++-|+-|||||||++.++..-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            44678999999999999999998653

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.18  E-value=0.0001  Score=48.84  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999988864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.18  E-value=0.00011  Score=51.32  Aligned_cols=21  Identities=24%  Similarity=0.574  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++++|+.|||||||++.+.+-
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCChHHHHHHHHHcC
Confidence            578999999999999998874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00011  Score=51.90  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|+.|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5799999999999999988763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.16  E-value=0.00011  Score=49.67  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=24.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.++++-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            4567789999999999999999988753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.00017  Score=48.63  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            5788999999999999999888654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.15  E-value=0.00012  Score=51.13  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|||||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4799999999999999988764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00012  Score=50.04  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.11  E-value=0.00013  Score=50.35  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++|+|.|||||||||....|..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999998875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00014  Score=52.28  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|+.|||||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4899999999999999998864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.09  E-value=0.00014  Score=50.78  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999887643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00013  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4689999999999999988764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.08  E-value=0.00014  Score=50.79  Aligned_cols=26  Identities=27%  Similarity=0.577  Sum_probs=22.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...-.+++.||||+||||+++.+.+.
T Consensus        33 ~~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          33 EPLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             SCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999988764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.06  E-value=9.4e-05  Score=51.35  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37999999999999999998743

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.06  E-value=0.00015  Score=50.81  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998743

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00011  Score=51.18  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|||||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999999873

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.00017  Score=50.42  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999988754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00021  Score=48.15  Aligned_cols=23  Identities=26%  Similarity=0.661  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -+++++|+||+|||+++..|...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            47899999999999999888753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.02  E-value=0.00026  Score=49.83  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=22.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+...|++.||||+|||++++.+...
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhc
Confidence            45677999999999999999998753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.98  E-value=0.00012  Score=51.80  Aligned_cols=21  Identities=38%  Similarity=0.539  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++|+|++|||||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999987765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.00018  Score=50.24  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.||||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            457999999999999999988753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.92  E-value=0.00024  Score=50.31  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4799999999999999988764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.92  E-value=0.00036  Score=51.09  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .+|+|.|++|||||||++.|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.90  E-value=0.00025  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028647           11 VIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++++|+.|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999998753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00029  Score=50.05  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+++++|+||+|||++++.|...
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            357899999999999999888753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.88  E-value=0.00012  Score=51.18  Aligned_cols=23  Identities=39%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999888743

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.86  E-value=0.00034  Score=47.89  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .++.+-|.+.|.|||||||+.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35678899999999999999998864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.83  E-value=0.012  Score=41.29  Aligned_cols=88  Identities=14%  Similarity=0.027  Sum_probs=49.1

Q ss_pred             EEEEEEeCCChhhhcc-chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc
Q 028647           57 FTLQIWDTAGQERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNS  134 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~  134 (206)
                      +.+.++|+|+.-.... ........+|.++++.+. +..++.........+.......   +.+ .-+|.|+.+....  
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~---~~~~~~vv~N~~~~~~~--  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSG---GVRLGGIICNSRKVANE--  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTB---BCEEEEEEEECCSSSCC--
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhcccc---ceeccceEEeeecCCCc--
Confidence            3478899987432222 222233457888888866 4556666555555554443321   333 3478899886542  


Q ss_pred             ccccHHHHHHHHHhcCCCcEE
Q 028647          135 RVVSEKKARAWCASKGNIPYF  155 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~  155 (206)
                          .+..+++.+.++ .+++
T Consensus       190 ----~~~~~~~~~~~~-~~~~  205 (269)
T d1cp2a_         190 ----YELLDAFAKELG-SQLI  205 (269)
T ss_dssp             ----HHHHHHHHHHHT-CCEE
T ss_pred             ----cchhhhhHhhcC-CeEE
Confidence                344555666665 4443

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00035  Score=47.96  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|+|.|||||||||+...|..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788899999999999888753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00053  Score=49.70  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=22.5

Q ss_pred             cceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            5 RRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.++-|+|.|++||||||+.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            46679999999999999999888753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.76  E-value=0.00043  Score=48.84  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+-.++|.|+||+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999988754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.72  E-value=0.00047  Score=47.75  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++.||+|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.63  E-value=0.00051  Score=48.74  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.0006  Score=47.76  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+++.||||+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00083  Score=48.07  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=21.7

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHh
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~   29 (206)
                      .++.++=|+|-|++|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34567899999999999999987663

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.60  E-value=0.00051  Score=49.97  Aligned_cols=25  Identities=28%  Similarity=0.570  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++-.++++||||+|||.|.+.+...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4467999999999999999998763

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.00058  Score=52.11  Aligned_cols=22  Identities=27%  Similarity=0.676  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      =||+++||+|||||-|.++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.51  E-value=0.00064  Score=47.99  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999874

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.00081  Score=47.22  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.|++.||||+|||++++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            45999999999999999999863

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00075  Score=46.50  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      .++++.||+|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4689999999999999988764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00087  Score=46.38  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++.||+|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999988753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.00098  Score=47.02  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +-.+++.||||+|||++++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            346999999999999999998853

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.001  Score=46.96  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +..|++.||||+|||++++.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999998864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.32  E-value=0.0011  Score=44.87  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0016  Score=44.28  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      +-|+|.|.+||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            568999999999999998876543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.0018  Score=43.91  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +-|+|.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            67999999999999999877643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.001  Score=45.79  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++.|++|+||||++..+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35899999999999999998764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.10  E-value=0.0022  Score=42.31  Aligned_cols=24  Identities=46%  Similarity=0.684  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-|++.|++|+||||+...|..+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988754

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.0011  Score=49.51  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=18.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-+++++|+||+|||+++..|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            35679999999999999876653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0017  Score=44.16  Aligned_cols=20  Identities=40%  Similarity=0.556  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0025  Score=46.28  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.-.++++||+|+|||.|...|..
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHh
Confidence            3445789999999999999998864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0017  Score=46.00  Aligned_cols=24  Identities=33%  Similarity=0.464  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +..|++.|++|+|||+|++.+...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            456999999999999999999864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.95  E-value=0.0026  Score=41.97  Aligned_cols=24  Identities=33%  Similarity=0.621  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-|++.|++|+||||+...|....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.92  E-value=0.0011  Score=48.55  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0025  Score=43.45  Aligned_cols=20  Identities=20%  Similarity=0.424  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998887754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0016  Score=45.10  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.|+|-|+.||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988763

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0029  Score=42.81  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -+.|.|+||+|||+|...|...
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999888754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.73  E-value=0.0012  Score=47.11  Aligned_cols=21  Identities=19%  Similarity=0.449  Sum_probs=15.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 028647            9 LKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~   29 (206)
                      .-|+|.|++||||||+.+.|.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            359999999999999998874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.71  E-value=0.0028  Score=46.97  Aligned_cols=25  Identities=20%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.-+++++||+|+|||-|.++|..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            4567899999999999999998864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.62  E-value=0.0042  Score=40.69  Aligned_cols=24  Identities=33%  Similarity=0.646  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-|++.|++|+||||+.-.|....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            468999999999999998888664

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.56  E-value=0.0035  Score=46.38  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.+++.||||+|||++...+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.54  E-value=0.0053  Score=44.80  Aligned_cols=26  Identities=19%  Similarity=0.356  Sum_probs=23.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...++|.|=|.-|+||||+++.|...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            45789999999999999999988864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0034  Score=43.26  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -+.|.|+||+|||+|...+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999888754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.45  E-value=0.003  Score=47.46  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      =|+|.|++||||||.+..++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            4899999999999999998864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0042  Score=42.93  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|+|-|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999998753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.41  E-value=0.0043  Score=43.03  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028647           10 KVIILGDSGVGKTSLMNQYVNKK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++|.|+||+|||+|...+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999998887543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.40  E-value=0.0046  Score=45.09  Aligned_cols=25  Identities=24%  Similarity=0.612  Sum_probs=22.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.24  E-value=0.0063  Score=44.29  Aligned_cols=24  Identities=46%  Similarity=0.610  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            7 TLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++|.|-|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            357899999999999999998875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.21  E-value=0.0056  Score=43.51  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-|+|.|..|+|||||+..+++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999988754

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.13  E-value=0.0061  Score=42.05  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --++|.|+||+|||+|...+...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35789999999999999888653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.00  E-value=0.0076  Score=43.67  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999998753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.97  E-value=0.0074  Score=41.68  Aligned_cols=22  Identities=14%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-|++.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998865

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0073  Score=41.11  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      |++-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0014  Score=43.93  Aligned_cols=18  Identities=33%  Similarity=0.708  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028647           12 IILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~   29 (206)
                      +|+|+.||||||++..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.80  E-value=0.011  Score=42.85  Aligned_cols=25  Identities=36%  Similarity=0.601  Sum_probs=20.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++.-.++++|++|+|||.+.+.|..
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHH
Confidence            3344688999999999999988764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.0094  Score=40.34  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.78  E-value=0.0068  Score=40.69  Aligned_cols=23  Identities=13%  Similarity=0.280  Sum_probs=19.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.+++.||+++|||+|+..|+.
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            35689999999999999988764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.77  E-value=0.0085  Score=41.21  Aligned_cols=21  Identities=33%  Similarity=0.339  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -+.|.|+||+|||+|...+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999988864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0093  Score=41.22  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 028647            9 LKVIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --+.|.|+||+|||+|...++..
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999888753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.69  E-value=0.0096  Score=40.52  Aligned_cols=21  Identities=38%  Similarity=0.631  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +.+.|++|+|||.|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.61  E-value=0.0068  Score=43.27  Aligned_cols=17  Identities=35%  Similarity=0.702  Sum_probs=14.0

Q ss_pred             EEEEcCCCCCHHHH-HHH
Q 028647           11 VIILGDSGVGKTSL-MNQ   27 (206)
Q Consensus        11 i~viG~~~~GKStl-i~~   27 (206)
                      ++|+|+||+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            68999999999976 444

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.0091  Score=44.97  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=19.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 028647            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+++|+|.+|+|||+++..++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            35699999999999999877664

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.55  E-value=0.0068  Score=43.42  Aligned_cols=18  Identities=28%  Similarity=0.639  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028647           12 IILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~   29 (206)
                      +++|+.||||||++..+.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999998873

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.012  Score=40.75  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .+++-|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999988754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.45  E-value=0.0087  Score=43.05  Aligned_cols=18  Identities=28%  Similarity=0.695  Sum_probs=14.5

Q ss_pred             EEEEEcCCCCCHHHHH-HH
Q 028647           10 KVIILGDSGVGKTSLM-NQ   27 (206)
Q Consensus        10 ~i~viG~~~~GKStli-~~   27 (206)
                      .++|.|++||||||.+ ++
T Consensus        26 ~~lV~g~aGSGKTt~l~~r   44 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHR   44 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHH
Confidence            3789999999999764 44

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.33  E-value=0.013  Score=41.29  Aligned_cols=20  Identities=25%  Similarity=0.552  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999877763

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.021  Score=34.86  Aligned_cols=27  Identities=11%  Similarity=0.192  Sum_probs=23.3

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.+..|.|.+.|..|+||||+.+.|..
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHHH
Confidence            445679999999999999999998864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.24  E-value=0.013  Score=39.85  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028647           10 KVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~   29 (206)
                      -+.|.|+||+|||+|...++
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46889999999999987764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.98  E-value=0.014  Score=43.47  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=17.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 028647            8 LLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~   29 (206)
                      .++ +|+|+.|||||+++..+.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            354 588999999999999874

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.021  Score=39.97  Aligned_cols=19  Identities=26%  Similarity=0.358  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028647           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      .+|.|++|+|||||+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999987765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.46  E-value=0.023  Score=39.95  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3445678999999999999988775

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.025  Score=40.19  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            789999999999999988765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.025  Score=41.60  Aligned_cols=19  Identities=32%  Similarity=0.543  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 028647           10 KVIILGDSGVGKTSLMNQY   28 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l   28 (206)
                      -.+|.|+||+||||++.++
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4688999999999987553

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.12  E-value=0.54  Score=31.41  Aligned_cols=65  Identities=9%  Similarity=0.080  Sum_probs=43.3

Q ss_pred             EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCC
Q 028647           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDG  131 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~  131 (206)
                      +.+.++|+++..  .......+..+|.++++...+ ..+.....+....+...       +.|++ +|+|+.+..+
T Consensus       112 ~d~IiiD~~~~~--~~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-------~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGL--QLDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-------GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSS--SHHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-------TCEEEEEEEEEETSCT
T ss_pred             CCEEEEcccccc--cccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh-------hhhhhhhhhccccccc
Confidence            347889999754  233445567799999999775 44555555555444321       66765 8999998654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.00  E-value=0.079  Score=37.25  Aligned_cols=21  Identities=43%  Similarity=0.771  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            689999999999999888764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.076  Score=37.12  Aligned_cols=21  Identities=38%  Similarity=0.425  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -+.+.|++++|||||.-.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            357899999999999877664

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.89  E-value=0.059  Score=35.40  Aligned_cols=21  Identities=14%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028647           11 VIILGDSGVGKTSLMNQYVNK   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.63  E-value=0.08  Score=36.62  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=18.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 028647            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-|+|.|++|+||+++.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3579999999999999888764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.38  E-value=0.09  Score=32.41  Aligned_cols=21  Identities=14%  Similarity=0.166  Sum_probs=16.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 028647            9 LKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~   29 (206)
                      -..+|.++.|+|||+++-.+.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            445779999999999876554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=0.1  Score=36.63  Aligned_cols=25  Identities=28%  Similarity=0.325  Sum_probs=18.6

Q ss_pred             ccceeEEEEEEcCCCCCHHHHHHHH
Q 028647            4 RRRTLLKVIILGDSGVGKTSLMNQY   28 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l   28 (206)
                      ....+.-|++.|.-|+||||+.-.+
T Consensus         4 ~~~~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           4 LQNIPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             GSSCCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCCCCeEEEEECCCcChHHHHHHHH
Confidence            3344556788999999999976554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.02  E-value=0.13  Score=35.17  Aligned_cols=19  Identities=37%  Similarity=0.471  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028647           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999998864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.55  E-value=0.15  Score=34.69  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028647           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      ++|.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999998863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.52  E-value=0.33  Score=31.45  Aligned_cols=26  Identities=12%  Similarity=0.337  Sum_probs=18.0

Q ss_pred             ceeEEEEEEcC-CCCCHHHHHHHHhcCC
Q 028647            6 RTLLKVIILGD-SGVGKTSLMNQYVNKK   32 (206)
Q Consensus         6 ~~~~~i~viG~-~~~GKStli~~l~~~~   32 (206)
                      ++++||+|+|. .+.|-| |+..|..+.
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~   48 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGE   48 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCc
Confidence            56799999996 666655 555566543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.24  E-value=0.13  Score=36.68  Aligned_cols=14  Identities=50%  Similarity=0.807  Sum_probs=12.9

Q ss_pred             EEEcCCCCCHHHHH
Q 028647           12 IILGDSGVGKTSLM   25 (206)
Q Consensus        12 ~viG~~~~GKStli   25 (206)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999975

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.11  E-value=0.15  Score=35.96  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      |++++|++|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            689999999999999876653

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.06  E-value=0.22  Score=32.99  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=16.3

Q ss_pred             EEEEEcCC-CCCHHHHHHHHh
Q 028647           10 KVIILGDS-GVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~-~~GKStli~~l~   29 (206)
                      ++.|.|.. |+||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            67899995 999999876654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.05  E-value=0.19  Score=33.40  Aligned_cols=25  Identities=8%  Similarity=0.044  Sum_probs=21.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647            6 RTLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .....+++-|++|+|||++...+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999988764

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.81  E-value=0.14  Score=36.65  Aligned_cols=15  Identities=47%  Similarity=0.756  Sum_probs=13.4

Q ss_pred             EEEEcCCCCCHHHHH
Q 028647           11 VIILGDSGVGKTSLM   25 (206)
Q Consensus        11 i~viG~~~~GKStli   25 (206)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999975

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.89  E-value=0.26  Score=34.43  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      +.+.|++++|||+|...+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999876653

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.84  E-value=0.17  Score=36.18  Aligned_cols=15  Identities=47%  Similarity=0.753  Sum_probs=13.4

Q ss_pred             EEEEcCCCCCHHHHH
Q 028647           11 VIILGDSGVGKTSLM   25 (206)
Q Consensus        11 i~viG~~~~GKStli   25 (206)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999986

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.15  E-value=0.28  Score=34.19  Aligned_cols=20  Identities=35%  Similarity=0.348  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028647           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      +-+.|++++|||+|...+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            57899999999999877764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.87  E-value=0.31  Score=33.82  Aligned_cols=20  Identities=30%  Similarity=0.615  Sum_probs=14.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHH
Q 028647            9 LKVIILGDSGVGKTSLMNQY   28 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l   28 (206)
                      .-|++.|.-|+||||+.-.|
T Consensus        21 ~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            33466699999999985544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.44  E-value=0.33  Score=33.97  Aligned_cols=114  Identities=11%  Similarity=0.151  Sum_probs=57.9

Q ss_pred             EEEEEEeCCChhhhccchhh-hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCc
Q 028647           57 FTLQIWDTAGQERFQSLGVA-FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGNKIDVDGGNS  134 (206)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~  134 (206)
                      +.+.++|+|+.......... ....++.++++... +..+...+......+.......   +.++ .+|.|+.+...   
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~---~~~~~gvv~n~~~~~~---  191 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSG---SVRLGGLICNSRNTDR---  191 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTS---CCEEEEEEEECCCCTT---
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcc---cccccceeehhhcchh---
Confidence            34678888875322222221 22346767666644 4455555555555554333221   3444 37889887432   


Q ss_pred             ccccHHHHHHHHHhcCCCcEEEee---------ccCCC---------CHHHHHHHHHHHHHhcCc
Q 028647          135 RVVSEKKARAWCASKGNIPYFETS---------AKEGI---------NVEEAFQCIAKNALKSGE  181 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~S---------~~~~~---------~i~~l~~~l~~~~~~~~~  181 (206)
                         ..+...++.+.++ .+++.+-         ...|.         ..-+-+..|.+.++++.+
T Consensus       192 ---~~~~~~~~~~~~g-~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~  252 (289)
T d2afhe1         192 ---EDELIIALANKLG-TQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKL  252 (289)
T ss_dssp             ---HHHHHHHHHHHHT-SCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCC
T ss_pred             ---hHHHHHHHHHHcC-CeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCC
Confidence               2344555666665 4444321         11222         233456777777776553

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=84.42  E-value=2.2  Score=27.19  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=37.2

Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647           91 NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA  159 (206)
Q Consensus        91 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (206)
                      +|..+++.....+..++   ...   +.|+|+++......+      ..+++.++++..+ ++++.+..
T Consensus         3 sd~~~l~~~v~~~~~~l---~~A---krPvIi~G~g~~~~~------a~~~l~~lae~~~-~Pv~tt~~   58 (175)
T d1zpda1           3 SDEASLNAAVDETLKFI---ANR---DKVAVLVGSKLRAAG------AEEAAVKFTDALG-GAVATMAA   58 (175)
T ss_dssp             CCHHHHHHHHHHHHHHH---TTC---SCEEEEECTTTTTTT------CHHHHHHHHHHHC-CCEEEEGG
T ss_pred             CChHHHHHHHHHHHHHH---HcC---CCEEEEECcCccccc------hHHHHHHHHHhhc-eeEEeccc
Confidence            45555555544333333   332   679999999888543      5888899999997 77775543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.32  E-value=0.34  Score=30.10  Aligned_cols=17  Identities=35%  Similarity=0.487  Sum_probs=13.7

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 028647           12 IILGDSGVGKTS-LMNQY   28 (206)
Q Consensus        12 ~viG~~~~GKSt-li~~l   28 (206)
                      +++||=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            578999999999 55554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.92  E-value=0.21  Score=35.01  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028647           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +++++|++|+|||+|+..+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            678999999999999876543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.78  E-value=0.38  Score=31.41  Aligned_cols=16  Identities=31%  Similarity=0.553  Sum_probs=13.2

Q ss_pred             EEEEEcCCCCCHHHHH
Q 028647           10 KVIILGDSGVGKTSLM   25 (206)
Q Consensus        10 ~i~viG~~~~GKStli   25 (206)
                      ++++.+++|+|||...
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            4678999999999643

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.96  E-value=4.5  Score=26.47  Aligned_cols=61  Identities=15%  Similarity=0.043  Sum_probs=37.4

Q ss_pred             EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q 028647           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDV  129 (206)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  129 (206)
                      +.++|+|+...  ......+..+|.++++...+ ..+.....+........       +.+ +-+|+|+.+-
T Consensus       112 ~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~iv~N~~~~  173 (232)
T d1hyqa_         112 ILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-------GTKVLGVVVNRITT  173 (232)
T ss_dssp             EEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-------TCEEEEEEEEEECT
T ss_pred             eeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc-------cccccccccccccc
Confidence            67899988542  33444566799999999875 33444444433333222       334 4478999863

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.75  E-value=0.46  Score=29.94  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=17.4

Q ss_pred             eeEEEEEEcC-CCCCHHHHHHHHhcC
Q 028647            7 TLLKVIILGD-SGVGKTSLMNQYVNK   31 (206)
Q Consensus         7 ~~~~i~viG~-~~~GKStli~~l~~~   31 (206)
                      .++||+|+|. .++|.+... .|..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~   26 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNG   26 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHH
Confidence            4689999995 788888554 45543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.51  E-value=6.2  Score=27.02  Aligned_cols=20  Identities=25%  Similarity=0.534  Sum_probs=16.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHH
Q 028647            9 LKVIILGDSGVGKTSLMNQY   28 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l   28 (206)
                      -+|+|-|.-|+||||+.-.|
T Consensus         3 r~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36788899999999986554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.87  E-value=0.25  Score=29.96  Aligned_cols=16  Identities=25%  Similarity=0.355  Sum_probs=12.9

Q ss_pred             EEEEEEcCCCCCHHHH
Q 028647            9 LKVIILGDSGVGKTSL   24 (206)
Q Consensus         9 ~~i~viG~~~~GKStl   24 (206)
                      -++++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4667889999999943