Citrus Sinensis ID: 028667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY
Secondary Structure (PSIPRED)
cHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccHHHHccccccccHHHHHHHccccccccEEEEccccHHHHHHHHHHHcccEEEEEEEccccccEEEEEEHHHHHHHHHHcccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEcEEEccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHccccccccEEEEcccHHHHHHHHHHHHccccEEEEEccccccEEEEEEEHHHHHHHHHHcccccccccHHHHccccccEEEEcccccHHHHHHHHHHccccccEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLvnpmlrpvvssrFESVSSarmeehgfesttISDILKakgkgadgswlwcttdDTVYDAVKSMTQHNVGAlvvvkpgeqksvagiITERDYLRKIIVQgrsskstkvgdimteenklitvspDTKVLRAMQLMTDnrirhipviddkgmigMVSIGDVVRAVVSEHREELNRLNAFIQGGY
Flexible Loop (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSsarmeehgfesttisdILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVgalvvvkpgeqksvagiiterdylrkiivqgrsskstkvgdimteenklitvspdtKVLRAMQLMtdnrirhipviddkgmiGMVSIGDVVRAVVSEHREelnrlnafiqggy
Low Complexity Region (SEG)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY
Disordered region (IsUnstruct)
*******FLSHGNIVKSAVLQRIRLVNPMLRPVV********************TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG********GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAF*****
Disordered Region (DISOPRED)
***********GNIVKSAVLQRIRLVN******************************DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQ***
Disordered Region (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY
Disordered Region (DISPRO)
*QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9LEV3	206	CBS domain-containing pro	yes	no	1.0	0.995	0.830	7e-98
P54606	140	CBS domain-containing pro	yes	no	0.502	0.735	0.348	2e-12
P50100	196	Uncharacterized protein M	yes	no	0.570	0.596	0.336	7e-12
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.565	0.707	0.367	9e-12
O34682	148	Uncharacterized protein Y	no	no	0.570	0.790	0.353	2e-11
Q58069	194	Uncharacterized protein M	yes	no	0.497	0.525	0.327	4e-11
P21879	488	Inosine-5'-monophosphate	no	no	0.595	0.25	0.3	3e-08
Q4L385	488	Inosine-5'-monophosphate	yes	no	0.546	0.229	0.285	3e-08
Q8NY70	488	Inosine-5'-monophosphate	yes	no	0.526	0.221	0.286	1e-07
Q6GC82	488	Inosine-5'-monophosphate	yes	no	0.526	0.221	0.286	1e-07

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score =  356 bits (913), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 171/206 (83%), Positives = 189/206 (91%), Gaps = 1/206 (0%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
           MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query: 60  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKI
Sbjct: 61  MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120

Query: 120 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 179
           IVQGRSSKSTKVGDIMTEENKLITV+P+TKVLRAMQLMTDNRIRHIPVI DKGMIGMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSI 180

Query: 180 GDVVRAVVSEHREELNRLNAFIQGGY 205
           GDVVRAVV EHREEL RLNA+IQGGY
Sbjct: 181 GDVVRAVVHEHREELQRLNAYIQGGY 206

Arabidopsis thaliana (taxid: 3702)

>sp|P54606|YHCV_BACSU CBS domain-containing protein YhcV OS=Bacillus subtilis (strain 168) GN=yhcV PE=4 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 68/109 (62%), Gaps = 6/109 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + + T+ +A   M QHNVGA+ VV   EQ  + G++T+RD   +   QGR  + T V +
Sbjct: 15  VSPNQTIQEAASLMKQHNVGAIPVV---EQGVLKGMLTDRDIALRTTAQGRDGQ-TPVSE 70

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 182
           +M+ E  L++ +P+  +  A QLM  ++IR +P++D   ++G+V++GD+
Sbjct: 71  VMSTE--LVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLVGIVALGDL 117

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 75/125 (60%), Gaps = 8/125 (6%)

Query: 78  DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
           +T  +    M +H +G++V+V   E+    GIITERD + K++ QG++       DIM++
Sbjct: 21  ETAVEIAYKMREHGIGSVVIV--NEKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQ 78

Query: 138 ENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA---VVSEHREE 193
              +ITV  D +V  A++LM D  IR +P++DD G +IG+V++ D+++    +V+   EE
Sbjct: 79  --PVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLVATIEEE 136

Query: 194 LNRLN 198
           + +  
Sbjct: 137 MKKFQ 141

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 70.1 bits (170), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 12/128 (9%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS--TKVGDIMT 136
           T+ +A K M +HN+G+LVV+    Q  V GIITERD     IV+  S++   + V   MT
Sbjct: 21  TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERD-----IVKAASNRDIDSPVEKYMT 73

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHREELN 195
           ++ K +T   DT+V  A+ +M +N  RH+P+I   G + G+VSI D+ RA++  H  +  
Sbjct: 74  KDVKGVT--EDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARALLDVHTMQFG 131

Query: 196 RLNAFIQG 203
           +    ++G
Sbjct: 132 KPAEEVKG 139

Acidianus ambivalens (taxid: 2283)

>sp|O34682|YLBB_BACSU Uncharacterized protein YlbB OS=Bacillus subtilis (strain 168) GN=ylbB PE=4 SV=2

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 13/130 (10%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
           T I D++ A          +CT  D VY+A   M   NVGA+ VV   + +++ GI+T+R
Sbjct: 2   TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDR 53

Query: 114 DY-LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
           D  LR I +  +   S K+ D MTE  K ++V  D  V   + LM  +++R IPV  +K 
Sbjct: 54  DLVLRGIAI--KKPNSQKITDAMTE--KPVSVEEDASVDEVLHLMASHQLRRIPVTKNKK 109

Query: 173 MIGMVSIGDV 182
           + G+V++GD+
Sbjct: 110 LTGIVTLGDL 119

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 69/113 (61%), Gaps = 11/113 (9%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T + ++YD    MT++N+GA+V+V   E     GI+TERD +++++     SK+ K  D+
Sbjct: 21  TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVV-----SKNLKPKDV 72

Query: 135 MTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184
           + EE    K+IT+  +  +  A ++M  + I+ +PV+ D  ++G+V+  D+VR
Sbjct: 73  LAEEVMSKKIITIPQNASITEAAKIMATHGIKRLPVVKDGELVGIVTQSDIVR 125

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P21879|IMDH_BACSU Inosine-5'-monophosphate dehydrogenase OS=Bacillus subtilis (strain 168) GN=guaB PE=1 SV=2

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 8/130 (6%)

Query: 58  DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           D +K   +G   +  + T D  V+DA   M ++ +  + +V   E + + GIIT RD LR
Sbjct: 86  DKVKRSERGVITNPFFLTPDHQVFDAEHLMGKYRISGVPIVNNEEDQKLVGIITNRD-LR 144

Query: 118 KIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GM 176
            I     S  S K+ D+MT+E +L+T S  T +  A +++  ++I  +P++DD+  + G+
Sbjct: 145 FI-----SDYSMKISDVMTKE-ELVTASVGTTLDEAEKILQKHKIEKLPLVDDQNKLKGL 198

Query: 177 VSIGDVVRAV 186
           ++I D+ + +
Sbjct: 199 ITIKDIEKVI 208

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q4L385|IMDH_STAHJ Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=guaB PE=3 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 7/119 (5%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
            + T D++VY+A   M ++ +  + +V   E + + GI+T RD LR I        S K+
Sbjct: 100 FYLTPDESVYEAEALMGKYRISGVPIVSDKESRELVGILTNRD-LRFI-----EDFSIKI 153

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH 190
            D+MT+EN LIT    T +  A  ++ +++I  +P++++  + G+++I D+ + +   H
Sbjct: 154 SDVMTKEN-LITAPVGTTLDEAETILQEHKIEKLPLVENGRLEGLITIKDIEKVLEFPH 211

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q8NY70|IMDH_STAAW Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=guaB PE=3 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 67/115 (58%), Gaps = 7/115 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
            + T +++VY+A   M ++ +  + +V   E +++ GI+T RD LR I        S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
            D+MT+EN LIT   +T +  A +++  ++I  +P++ D  + G+++I D+ + +
Sbjct: 154 VDVMTQEN-LITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVI 207

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q6GC82|IMDH_STAAS Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=guaB PE=3 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 67/115 (58%), Gaps = 7/115 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
            + T +++VY+A   M ++ +  + +V   E +++ GI+T RD LR I        S K+
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRD-LRFI-----EDFSIKI 153

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
            D+MT+EN LIT   +T +  A +++  ++I  +P++ D  + G+++I D+ + +
Sbjct: 154 VDVMTQEN-LITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVI 207

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
357491617	242	Cbs domain protein [Medicago truncatula]	1.0	0.847	0.863	1e-103
357491619	254	Cbs domain protein [Medicago truncatula]	1.0	0.807	0.863	1e-103
357491615	205	Cbs domain protein [Medicago truncatula]	1.0	1.0	0.863	1e-103
224127037	205	predicted protein [Populus trichocarpa]	1.0	1.0	0.858	1e-101
225434277	205	PREDICTED: CBS domain-containing protein	1.0	1.0	0.868	1e-101
297745725	262	unnamed protein product [Vitis vinifera]	1.0	0.782	0.868	1e-101
388511535	205	unknown [Lotus japonicus]	1.0	1.0	0.839	1e-100
449444316	206	PREDICTED: CBS domain-containing protein	1.0	0.995	0.849	5e-99
351722175	205	uncharacterized protein LOC100527191 [Gl	1.0	1.0	0.839	8e-99
449475831	206	PREDICTED: LOW QUALITY PROTEIN: CBS doma	1.0	0.995	0.844	2e-98

>gi|357491617|ref|XP_003616096.1| Cbs domain protein [Medicago truncatula] gi|355517431|gb|AES99054.1| Cbs domain protein [Medicago truncatula]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/205 (86%), Positives = 198/205 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 38  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 98  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 157

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG 180
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMTDNRIRHIPVI+DKGM+GMVSIG
Sbjct: 158 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVINDKGMLGMVSIG 217

Query: 181 DVVRAVVSEHREELNRLNAFIQGGY 205
           DVVRAVV EHR+EL+RLNA+IQGGY
Sbjct: 218 DVVRAVVGEHRQELDRLNAYIQGGY 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491619|ref|XP_003616097.1| Cbs domain protein [Medicago truncatula] gi|355517432|gb|AES99055.1| Cbs domain protein [Medicago truncatula]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/205 (86%), Positives = 198/205 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 50  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 109

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 110 KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 169

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG 180
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMTDNRIRHIPVI+DKGM+GMVSIG
Sbjct: 170 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVINDKGMLGMVSIG 229

Query: 181 DVVRAVVSEHREELNRLNAFIQGGY 205
           DVVRAVV EHR+EL+RLNA+IQGGY
Sbjct: 230 DVVRAVVGEHRQELDRLNAYIQGGY 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491615|ref|XP_003616095.1| Cbs domain protein [Medicago truncatula] gi|217073214|gb|ACJ84966.1| unknown [Medicago truncatula] gi|355517430|gb|AES99053.1| Cbs domain protein [Medicago truncatula] gi|388522955|gb|AFK49539.1| unknown [Medicago truncatula]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/205 (86%), Positives = 198/205 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 1   MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 61  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG 180
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVLRAMQLMTDNRIRHIPVI+DKGM+GMVSIG
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVINDKGMLGMVSIG 180

Query: 181 DVVRAVVSEHREELNRLNAFIQGGY 205
           DVVRAVV EHR+EL+RLNA+IQGGY
Sbjct: 181 DVVRAVVGEHRQELDRLNAYIQGGY 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127037|ref|XP_002319991.1| predicted protein [Populus trichocarpa] gi|222858367|gb|EEE95914.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/205 (85%), Positives = 197/205 (96%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGA+++ L+HGN+VK ++LQ +R+++P+LRP+V SRFESVSSAR+EEHGFEST I+DIL
Sbjct: 1   MQGALRACLTHGNVVKDSLLQHVRVLSPLLRPIVFSRFESVSSARIEEHGFESTRIADIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 61  KEKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG 180
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVL+AMQLMTD RIRHIPVIDDK MIGMVSIG
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLKAMQLMTDKRIRHIPVIDDKEMIGMVSIG 180

Query: 181 DVVRAVVSEHREELNRLNAFIQGGY 205
           DVVRAVVSEHREE++RLNA+IQGGY
Sbjct: 181 DVVRAVVSEHREEVDRLNAYIQGGY 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434277|ref|XP_002262902.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 1 [Vitis vinifera] gi|225434279|ref|XP_002262927.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 2 [Vitis vinifera] gi|225434281|ref|XP_002262956.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 3 [Vitis vinifera]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/205 (86%), Positives = 195/205 (95%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGAIQ+ +SHG+IVK+AVL +IRLVNP++  VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 1   MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 61  KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG 180
           VQGRSSKSTKVGDIMTEENKLITVSP+TKVLRAMQLMTDNRIRHIPVIDDK MIGMVSIG
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVSPNTKVLRAMQLMTDNRIRHIPVIDDKEMIGMVSIG 180

Query: 181 DVVRAVVSEHREELNRLNAFIQGGY 205
           DVVRAVV+EHREEL+RLNA+IQGGY
Sbjct: 181 DVVRAVVTEHREELDRLNAYIQGGY 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745725|emb|CBI15781.3| unnamed protein product [Vitis vinifera]

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/205 (86%), Positives = 195/205 (95%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGAIQ+ +SHG+IVK+AVL +IRLVNP++  VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 58  MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 117

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 118 KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKII 177

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG 180
           VQGRSSKSTKVGDIMTEENKLITVSP+TKVLRAMQLMTDNRIRHIPVIDDK MIGMVSIG
Sbjct: 178 VQGRSSKSTKVGDIMTEENKLITVSPNTKVLRAMQLMTDNRIRHIPVIDDKEMIGMVSIG 237

Query: 181 DVVRAVVSEHREELNRLNAFIQGGY 205
           DVVRAVV+EHREEL+RLNA+IQGGY
Sbjct: 238 DVVRAVVTEHREELDRLNAYIQGGY 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511535|gb|AFK43829.1| unknown [Lotus japonicus]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/205 (83%), Positives = 196/205 (95%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG +++  S GN++K+AVLQ++R+VNP+L+PV  SR+ESVS AR+EEHGFESTTI+DIL
Sbjct: 1   MQGGMRAIFSRGNVIKNAVLQQVRMVNPLLKPVAFSRYESVSPARIEEHGFESTTIADIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           KAKGKGADGSWLWCTT+DTVY+AVKSMTQ+NVGALVVVKP E+KS+AGIITERDYLRKII
Sbjct: 61  KAKGKGADGSWLWCTTEDTVYEAVKSMTQNNVGALVVVKPAEEKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG 180
           VQGRSSKSTKVGDIMTEENKLITV+PDT+VLRAMQLMTDNRIRHIPVID KGM+GMVSIG
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTRVLRAMQLMTDNRIRHIPVIDGKGMLGMVSIG 180

Query: 181 DVVRAVVSEHREELNRLNAFIQGGY 205
           DVVRAVVSEHR+EL+RLNAFIQGGY
Sbjct: 181 DVVRAVVSEHRQELDRLNAFIQGGY 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444316|ref|XP_004139921.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like isoform 1 [Cucumis sativus] gi|449444318|ref|XP_004139922.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like isoform 2 [Cucumis sativus]

 Score =  365 bits (938), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 175/206 (84%), Positives = 192/206 (93%), Gaps = 1/206 (0%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 59
           MQGA++SFLSHGN+VK+AVLQ+IR+ NP +RP + SRF  S SSA +EEHGFESTTI DI
Sbjct: 1   MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESTTIDDI 60

Query: 60  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           LKAKGK ADGSWLWCTT+D+VYDAV+SMTQHNVGALVVVKP EQ S+AGIITERDYLRKI
Sbjct: 61  LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLRKI 120

Query: 120 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 179
           IVQGRSSKSTKVGDIMTEENKLITV+PDTKVL AMQLMTDNRIRHIPVID+KGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLLAMQLMTDNRIRHIPVIDEKGMKGMVSI 180

Query: 180 GDVVRAVVSEHREELNRLNAFIQGGY 205
           GDVVRAVVSEHREEL+RLNA+IQGGY
Sbjct: 181 GDVVRAVVSEHREELDRLNAYIQGGY 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722175|ref|NP_001236211.1| uncharacterized protein LOC100527191 [Glycine max] gi|255631750|gb|ACU16242.1| unknown [Glycine max]

 Score =  365 bits (936), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 172/205 (83%), Positives = 192/205 (93%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG  QSFLSHGN++++AVLQR+R+VNP+L+P+VSSRFESV+ AR+EEHGFESTTISDIL
Sbjct: 1   MQGGFQSFLSHGNVIRNAVLQRVRMVNPLLQPIVSSRFESVTPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
             KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVK    K++AGIITERDYLRKII
Sbjct: 61  NDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG 180
           VQGRSSKSTKVGDIMTEENKLITV+PDTKVL+AMQLMTD RIRHIPVID+KGM+GMVSIG
Sbjct: 121 VQGRSSKSTKVGDIMTEENKLITVTPDTKVLQAMQLMTDKRIRHIPVIDEKGMVGMVSIG 180

Query: 181 DVVRAVVSEHREELNRLNAFIQGGY 205
           DVVRAVV EHR+E+ RLNAFIQ GY
Sbjct: 181 DVVRAVVREHRQEVERLNAFIQRGY 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475831|ref|XP_004154564.1| PREDICTED: LOW QUALITY PROTEIN: CBS domain-containing protein CBSX3, mitochondrial-like [Cucumis sativus]

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/206 (84%), Positives = 191/206 (92%), Gaps = 1/206 (0%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 59
           MQGA++SFLSHGN+VK+AVLQ+IR+ NP +RP + SRF  S SSA +EEHGFES TI DI
Sbjct: 1   MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESXTIDDI 60

Query: 60  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           LKAKGK ADGSWLWCTT+D+VYDAV+SMTQHNVGALVVVKP EQ S+AGIITERDYLRKI
Sbjct: 61  LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLRKI 120

Query: 120 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 179
           IVQGRSSKSTKVGDIMTEENKLITV+PDTKVL AMQLMTDNRIRHIPVID+KGM GMVSI
Sbjct: 121 IVQGRSSKSTKVGDIMTEENKLITVTPDTKVLLAMQLMTDNRIRHIPVIDEKGMKGMVSI 180

Query: 180 GDVVRAVVSEHREELNRLNAFIQGGY 205
           GDVVRAVVSEHREEL+RLNA+IQGGY
Sbjct: 181 GDVVRAVVSEHREELDRLNAYIQGGY 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2183740	206	CBSX3 "AT5G10860" [Arabidopsis	1.0	0.995	0.830	8.6e-88
TAIR|locus:4515102654	193	AT1G47271 "AT1G47271" [Arabido	0.902	0.958	0.502	3.8e-46
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.595	0.835	0.425	2.9e-23
UNIPROTKB|Q0BYV1	144	HNE_2660 "CBS domain protein"	0.687	0.979	0.337	1.1e-18
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.663	0.944	0.347	1.4e-16
TIGR_CMR|SPO_2201	144	SPO_2201 "CBS domain protein"	0.663	0.944	0.347	1.4e-16
UNIPROTKB|Q81UY6	139	BAS0687 "CBS domain protein" [	0.487	0.719	0.339	6.2e-14
TIGR_CMR|BA_0720	139	BA_0720 "CBS domain protein" [	0.487	0.719	0.339	6.2e-14
UNIPROTKB|Q60B97	150	MCA0583 "CBS domain protein" [	0.604	0.826	0.341	1e-13
UNIPROTKB|Q5LLL6	174	Q5LLL6 "CBS domain protein" [R	0.687	0.810	0.284	3.5e-11

TAIR|locus:2183740 CBSX3 "AT5G10860" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 171/206 (83%), Positives = 189/206 (91%)

Query:     1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
             MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct:     1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query:    60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
             +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKI
Sbjct:    61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120

Query:   120 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 179
             IVQGRSSKSTKVGDIMTEENKLITV+P+TKVLRAMQLMTDNRIRHIPVI DKGMIGMVSI
Sbjct:   121 IVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSI 180

Query:   180 GDVVRAVVSEHREELNRLNAFIQGGY 205
             GDVVRAVV EHREEL RLNA+IQGGY
Sbjct:   181 GDVVRAVVHEHREELQRLNAYIQGGY 206

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:4515102654 AT1G47271 "AT1G47271" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 94/187 (50%), Positives = 138/187 (73%)

Query:    19 VLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDD 78
             +L R   V  + +  VS+ F  ++S    E G E+ T++D+L  K    D +W+ C T+D
Sbjct:     8 LLARANEVPKIHQRKVSAGFGCLTSPPPPEKGLENLTVADVLSTKDTDID-TWISCRTND 66

Query:    79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
             TV DAVK+M +HN+G+LVV++PG+Q+ +AGI+TERDY++KII  GRSSK TKVG++MT+E
Sbjct:    67 TVSDAVKNMAKHNIGSLVVLEPGDQQYIAGIVTERDYMKKIIGAGRSSKLTKVGEVMTDE 126

Query:   139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLN 198
             +KL+TVS  T +++AMQLM++N IRH+PVID K ++G++S+ DVV+A+V     EL RLN
Sbjct:   127 SKLVTVSSGTNIIKAMQLMSENHIRHVPVIDGK-IVGLISMVDVVKAIVDHQNGELKRLN 185

Query:   199 AFIQGGY 205
              FI+G Y
Sbjct:   186 EFIKGDY 192

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/127 (42%), Positives = 85/127 (66%)

Query:    77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             D  V DA++ M + N+GAL VV   E   V G+++ERDY RK+I++GRSS  T V +IM+
Sbjct:    24 DQMVLDALRLMAEKNIGALPVV---EGNVVVGVVSERDYARKVILKGRSSVGTPVREIMS 80

Query:   137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNR 196
               NK+ITV     V   M +MTD+ +RH+PV++D  ++G++SIGD+V+  ++E    + +
Sbjct:    81 --NKVITVDSQQSVEACMGIMTDSHLRHLPVVEDGRLLGLLSIGDLVKEAIAEQASLIQQ 138

Query:   197 LNAFIQG 203
             L  +I+G
Sbjct:   139 LEQYIRG 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BYV1 HNE_2660 "CBS domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 51/151 (33%), Positives = 87/151 (57%)

Query:    56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP-GEQKSVAGIITERD 114
             I  IL  KG+      +    DDT+ +A + + +  +GA+V +   GE   + G+++ERD
Sbjct:     3 IEQILNDKGREV----ITLRADDTLREAARLLDERRIGAVVTLDADGE---IVGVLSERD 55

Query:   115 YLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
              +R+   QG  +    VG+ MT    +IT+S D +V  A+QLMTD RIRH+PV+ +  + 
Sbjct:    56 IVRQFARQGEGALDMPVGNAMTRA--VITISADAEVDEALQLMTDRRIRHLPVVRNSRLT 113

Query:   175 GMVSIGDVVRAVVSEHREELNRLNAFIQGGY 205
             G VSIGD+V+  ++E + E   + +++   +
Sbjct:   114 GFVSIGDLVKWKIAETQAEAEAMKSYLSSQF 144

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 49/141 (34%), Positives = 78/141 (55%)

Query:    63 KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122
             K K +DG  +  +   TV  A   + +  +G +VV   GE  +  GI++ERD +R++   
Sbjct:     8 KSKASDGV-VTVSAAATVAQAAAILAEKRIGTVVVSDDGE--TAQGILSERDIVRELAAS 64

Query:   123 GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 182
             G    S  V   MT++  LIT   D KV   +  MT+ R RH+PVI++  ++G+V++GDV
Sbjct:    65 GSGCLSEPVSTYMTKD--LITCGRDAKVQDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDV 122

Query:   183 VRAVVSEHREELNRLNAFIQG 203
             V+A ++E   E + L   I G
Sbjct:   123 VKAQLAELAMEKDALEGMIMG 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2201 SPO_2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 49/141 (34%), Positives = 78/141 (55%)

Query:    63 KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122
             K K +DG  +  +   TV  A   + +  +G +VV   GE  +  GI++ERD +R++   
Sbjct:     8 KSKASDGV-VTVSAAATVAQAAAILAEKRIGTVVVSDDGE--TAQGILSERDIVRELAAS 64

Query:   123 GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 182
             G    S  V   MT++  LIT   D KV   +  MT+ R RH+PVI++  ++G+V++GDV
Sbjct:    65 GSGCLSEPVSTYMTKD--LITCGRDAKVQDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDV 122

Query:   183 VRAVVSEHREELNRLNAFIQG 203
             V+A ++E   E + L   I G
Sbjct:   123 VKAQLAELAMEKDALEGMIMG 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81UY6 BAS0687 "CBS domain protein" [Bacillus anthracis (taxid:1392)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/112 (33%), Positives = 71/112 (63%)

Query:    74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK---STK 130
             CT  D VY+A   M + ++G + VV   E + V G++T+RD    ++V+G + K   S K
Sbjct:    15 CTPLDNVYEAAVKMKEESIGLIPVV---ENEQVVGLVTDRD----LVVRGIAEKHPGSNK 67

Query:   131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 182
             + ++MT    +I+V+PD  + +A +LM  ++IR +PV++   ++GM+++GD+
Sbjct:    68 ITNVMT--TNIISVAPDDSLEKATELMAQHQIRRLPVVESDQLVGMLALGDL 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0720 BA_0720 "CBS domain protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/112 (33%), Positives = 71/112 (63%)

Query:    74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK---STK 130
             CT  D VY+A   M + ++G + VV   E + V G++T+RD    ++V+G + K   S K
Sbjct:    15 CTPLDNVYEAAVKMKEESIGLIPVV---ENEQVVGLVTDRD----LVVRGIAEKHPGSNK 67

Query:   131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 182
             + ++MT    +I+V+PD  + +A +LM  ++IR +PV++   ++GM+++GD+
Sbjct:    68 ITNVMT--TNIISVAPDDSLEKATELMAQHQIRRLPVVESDQLVGMLALGDL 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60B97 MCA0583 "CBS domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 44/129 (34%), Positives = 75/129 (58%)

Query:    77 DDTVYDAVKSMTQHNVGALVVVKPGEQK-SVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
             DDT+ +A K M  H+VG++VVV+  E      GI+T+RD + +I+ +  +  +  VGD+M
Sbjct:    17 DDTIVEAAKVMRAHHVGSVVVVEEAEGGCKPLGILTDRDLVVEILAEEVAPDAVTVGDVM 76

Query:   136 TEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM-IGMVSIGDVVRAVVSEHREEL 194
             + E  L+T      +   +Q M  + +R IPV+D++G+ +G++S  D +  +  E   EL
Sbjct:    77 SFE--LVTAQEQDGLWETLQRMRAHGVRRIPVVDERGLLVGIISADDYLEILAGE-LGEL 133

Query:   195 NRLNAFIQG 203
              RL A  +G
Sbjct:   134 ARLLAREKG 142

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLL6 Q5LLL6 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 43/151 (28%), Positives = 78/151 (51%)

Query:    54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
             +T++D+L  KG+            DT+   V  +    +GA++V    +  ++ GI++ER
Sbjct:    33 STVADLLGGKGEAVFS----VRPGDTIGQVVGVLKDKRIGAVLVTD--QNGALLGILSER 86

Query:   114 DYLRKII-VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
             D +R++    G++      G +MT   +  T +PD  +   ++ MT+ R RH+PV+ D  
Sbjct:    87 DIVRRMADTPGQTLPQQAEG-LMTRAVQ--TCAPDETLNVVLKRMTEGRFRHLPVMRDGK 143

Query:   173 MIGMVSIGDVVRAVVSEHREELNRLNAFIQG 203
             + GM++IGDVV   + E   E  ++   I G
Sbjct:   144 LCGMITIGDVVNFRLRELEYEALKMKQMIVG 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LEV3	CBSX3_ARATH	No assigned EC number	0.8300	1.0	0.9951	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	3e-49
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-29
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	2e-28
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-22
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-21
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	1e-21
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	5e-21
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	1e-19
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-19
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	3e-19
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	1e-17
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-17
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	5e-17
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	5e-16
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-15
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	5e-15
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	7e-15
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	9e-15
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	2e-14
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	3e-14
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	4e-14
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	4e-14
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	4e-14
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	5e-14
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	8e-14
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	9e-14
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-13
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	1e-13
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-13
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-13
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	2e-13
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	2e-13
pfam00571	57	pfam00571, CBS, CBS domain	7e-12
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	8e-12
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	2e-11
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-11
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-10
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	2e-10
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	3e-10
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	6e-10
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	7e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-09
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	1e-08
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	1e-08
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	1e-08
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	2e-08
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	2e-08
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	2e-08
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	3e-08
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	4e-08
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	7e-08
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-07
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-07
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-07
PRK10892	326	PRK10892, PRK10892, D-arabinose 5-phosphate isomer	3e-07
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	4e-07
cd04619	114	cd04619, CBS_pair_6, The CBS domain, named after h	4e-07
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	5e-07
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	6e-07
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	7e-07
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	9e-07
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	1e-06
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	1e-06
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	1e-06
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	1e-06
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	2e-06
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	2e-06
cd04582	106	cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contain	2e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	5e-06
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	5e-06
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	5e-06
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	7e-06
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	8e-06
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	8e-06
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	8e-06
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	9e-06
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	1e-05
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-05
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	2e-05
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	2e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-05
pfam00571	57	pfam00571, CBS, CBS domain	4e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	5e-05
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	8e-05
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	9e-05
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	1e-04
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	1e-04
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-04
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	1e-04
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	1e-04
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	2e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	2e-04
cd04594	104	cd04594, CBS_pair_EriC_assoc_archaea, This cd cont	2e-04
cd04594	104	cd04594, CBS_pair_EriC_assoc_archaea, This cd cont	2e-04
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	2e-04
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	2e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	2e-04
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	2e-04
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	2e-04
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	3e-04
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	3e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	4e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-04
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	4e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	4e-04
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	5e-04
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	5e-04
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	6e-04
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	6e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	8e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	0.001
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.001
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.001
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	0.002
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	0.002
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.002
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	0.003
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.003
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	0.003
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	0.004
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	0.004

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  155 bits (394), Expect = 3e-49
 Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 4/117 (3%)

Query: 69  GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS 128
              +    D TV +A K M + N+GA+VVV  G +  + GI +ERD +RK+ ++G S+  
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGR--LVGIFSERDIVRKVALRGASALD 58

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           T V +IMT    +ITV+PD  V  AM LMT+ R RH+PV+D   ++G+VSIGDVV+A
Sbjct: 59  TPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  105 bits (264), Expect = 1e-29
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 6/114 (5%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           + C+ D T+ +A + MT+H V +L+VV  G    + GI+T+RD   +++ +G     T V
Sbjct: 4   VTCSPDTTIREAARLMTEHRVSSLLVVDDGR---LVGIVTDRDLRNRVVAEGLDP-DTPV 59

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
            ++MT     IT+ PD  V  A+ LM +  I H+PV+DD  ++G++S  D++R 
Sbjct: 60  SEVMTAP--PITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  102 bits (257), Expect = 2e-28
 Identities = 45/114 (39%), Positives = 75/114 (65%), Gaps = 6/114 (5%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
             + DDT+ +A + M +H+VGAL V    E   + GI+T+RD + + + +GR   +T VG
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPVC---ENDRLVGIVTDRDIVVRAVAEGRDPDTTTVG 61

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           D+MT    ++TV+ D  V  A +LM ++++R +PV+DD G ++G+VS+GD+ RA
Sbjct: 62  DVMTRG--VVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 87.9 bits (218), Expect = 1e-22
 Identities = 44/113 (38%), Positives = 73/113 (64%), Gaps = 6/113 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + DDTV +A++ M +H +  L VV   +   + GI+TERD L + + +G       VGD
Sbjct: 6   VSPDDTVAEALRLMLEHGISGLPVVD--DDGRLVGIVTERD-LLRALAEGGLDPLVTVGD 62

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           +MT +  ++TVSPDT +  A +LM ++ IR +PV+DD+G ++G+V+  D++RA
Sbjct: 63  VMTRD--VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.1 bits (211), Expect = 1e-21
 Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 5/111 (4%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
             D TVY+A   MT++N+G L+VV   +     GIITERD ++K++ +    +   VG++
Sbjct: 7   DPDTTVYEAANIMTENNIGRLIVVDNEK---PVGIITERDLVKKVVSRNLKPREVPVGEV 63

Query: 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           M+    LIT+ P+  +  A +LM  + I+ +PV+DD  ++G+V+  D+V  
Sbjct: 64  MS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVMG 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.0 bits (211), Expect = 1e-21
 Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 3/107 (2%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           TV +A++ M +H V +LVV K  E     GI+T RD L+K++ +GR      V +IMT+ 
Sbjct: 11  TVAEALQLMKEHGVSSLVVEKRRES-DAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK- 68

Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
             LI+VSPD  +    +LM    IR  PV+++  +IG++S+ D+  A
Sbjct: 69  -PLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 83.4 bits (207), Expect = 5e-21
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            +   TV +A K M +  V  ++V+   +   + GI T +D   +++ QG   +ST V  
Sbjct: 6   VSPTTTVQEAAKLMREKRVSCVLVM---DGNKLVGIFTSKDIALRVVAQGLDPESTLVER 62

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           +MT     +  + DT VL A+ LM   + RH+PV+D  G ++G++ +  +  A
Sbjct: 63  VMTPNP--VCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 7/113 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D ++ +A K M + NVG++VVV P E     GI+TERD +R +   G     T V +
Sbjct: 6   VDPDTSIREAAKLMAEENVGSVVVVDPDE--RPIGIVTERDIVRAV-AAGIDL-DTPVSE 61

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           IMT    L+TV PD  V  A +LM  N IRH  V+D  G ++G++SI D+VR 
Sbjct: 62  IMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 79.1 bits (196), Expect = 2e-19
 Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 8/113 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C  D ++ +A   M +  + ++VVV  G      GI+TERD LR ++  G   ++  VG+
Sbjct: 6   CPPDTSLAEAASRMRERRISSIVVVDDGRP---LGIVTERDILR-LLASGPDLQTP-VGE 60

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           +M+  + L+TV  DT +  A QLM ++ IRH+ V+DD G ++G++S  D+++ 
Sbjct: 61  VMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQN 111

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 5/112 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            +   ++ DA + M    V +LVV+         GI+T +D   ++I  GRS K+ KV +
Sbjct: 162 VSPQASIQDAARKMKDEGVSSLVVLDDSGPLL--GIVTRKDLRSRVIADGRS-KTQKVSE 218

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           +MT    +I+V     +  AM +M  NRI+H+PV +D   +G++++ D++R 
Sbjct: 219 VMTSP--VISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRL 268

Length = 610

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 5/109 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           +  + +AV +M + ++G+LVV++ GE   + G++T R+ L+ +   G     T V  IM 
Sbjct: 9   ETLLSEAVATMAEQDLGSLVVMERGE---LVGLLTFREVLQAMAQHGAGVLDTTVRAIMN 65

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
            E   I  SPD  +    +LM +  +R++PV+D   ++G++S  DV +A
Sbjct: 66  PEP--IVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAKA 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 74.8 bits (184), Expect = 1e-17
 Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 10/113 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D +V DA+  M+++ V A+ VV   +   + GIITERD LR +       +   V +
Sbjct: 12  VKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRALA--AGGKRLLPVKE 66

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDN-RIRHIPVIDDKGM--IGMVSIGDVV 183
           +MT    ++TV PDT +  A++LM +  +IR +PV+DD G   +G++++ D++
Sbjct: 67  VMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 72.9 bits (180), Expect = 5e-17
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + D ++ DA+  M++  +G   VV   E   + GI T+ D LR+ + +G    +  V D
Sbjct: 7   VSPDTSLKDALLEMSRKGLGMTAVVD--EDGRLVGIFTDGD-LRRALEKGLDILTLPVAD 63

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM-IGMVSIGDVVRA 185
           +MT      T+ PD     A++LM +N+I  +PV+DD G  +G++ I D++RA
Sbjct: 64  VMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLRA 114

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 70.3 bits (173), Expect = 5e-16
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             ++ DA + M +H   AL+V        + GI+T  D L  +++ G  S ST VG+I T
Sbjct: 9   STSIRDAARLMREHGADALLV--RDGDPRL-GIVTRTDLLDAVLLDGLPS-STPVGEIAT 64

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 182
               LITV PD  +  A+ LMT +RI  + V +   ++G++   D+
Sbjct: 65  --FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 69.9 bits (172), Expect = 1e-15
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 25/130 (19%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI---IVQGRS-------- 125
           + +V +A + M  +++  L VV    +  + GI++E D LR+      + R+        
Sbjct: 10  ETSVAEAARLMLDNHISGLPVVDDDGR--LVGIVSEGDLLRRAELGTERRRARWLDLLAG 67

Query: 126 ----------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIG 175
                     S   KV D+MT    ++TV  DT +    +LM ++RI+ +PV+    ++G
Sbjct: 68  AEELAAAFVRSHGRKVADVMTRP--VVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVG 125

Query: 176 MVSIGDVVRA 185
           +VS  D++RA
Sbjct: 126 IVSRADLLRA 135

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 67.5 bits (166), Expect = 5e-15
 Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 10/113 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + D TV +A++ M ++ +  L VV   +   + GI+T RD LR       +     V +
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVD--DDGKLVGIVTNRD-LRFE-----TDLDKPVSE 58

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           +MT EN L TV   T +  A++L+ +++I  +PV+DD+G + G++++ D+ + 
Sbjct: 59  VMTPENLLTTV-EGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEKR 110

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 67.7 bits (166), Expect = 7e-15
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 14/124 (11%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR------- 124
           +  T D ++ +A   + +H + AL VV     + + GI+T+RD LR     GR       
Sbjct: 5   VTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRL 62

Query: 125 --SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGD 181
               K   VGDIM+    ++TV PDT +   + L+ D    H+PV+D+   ++G+V+  D
Sbjct: 63  RGRDKPETVGDIMSPP--VVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTD 120

Query: 182 VVRA 185
           ++ A
Sbjct: 121 LIAA 124

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 67.3 bits (165), Expect = 9e-15
 Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 25/126 (19%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST----- 129
           T D ++ +A+K M ++++  L VV  G+   + GI+T+RD     +     SK+T     
Sbjct: 7   TPDTSLMEALKLMKENSIRRLPVVDRGK---LVGIVTDRD-----LKLASPSKATTLDIW 58

Query: 130 ---------KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSI 179
                    KV DIMT     ITVSPD  V  A +LM + +I  +PV+DD+G ++G+++ 
Sbjct: 59  ELYYLLSKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITE 116

Query: 180 GDVVRA 185
            D+ RA
Sbjct: 117 SDLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 8/109 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + T+ +A + + ++   AL VV+ G    V GII+ RD + K +  G       V D M+
Sbjct: 10  EATIEEARELLLRYGHTALPVVEGGR---VVGIISRRD-VEKALRHGLGH--APVKDYMS 63

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
            +  ++TV PDT +    +LM ++ I  +PV++D  ++G+V+  D++R 
Sbjct: 64  TD--VVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.6 bits (161), Expect = 3e-14
 Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 7/113 (6%)

Query: 75  TTDDTVYDAVKSMTQHNV-GALVVVKPGEQKSVAGIITERDYLRKIIVQG-RSSKSTKVG 132
           T D +V +AV+ + +  + G  VV    +  ++ G ++E+D L++++           V 
Sbjct: 7   TPDMSVTEAVEKLLKSKISGGPVV---DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVR 63

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           DIMT E  ++TVSPD  ++   QLM   + +  PV+DD  ++G +S  DV+RA
Sbjct: 64  DIMTTE--VLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLRA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.8 bits (161), Expect = 4e-14
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 16/119 (13%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK------ 130
           DD V  A + M  H++  L V++ G+   + GI+TE+D    +    R     +      
Sbjct: 9   DDRVSHARRLMLDHDISRLPVIEGGK---LVGIVTEKDIADAL-RSFRPLVRDRHQERRI 64

Query: 131 ----VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
               V DIMT    +IT+ PDT V     LM +N I  +PV+DD  ++G+V+  D++R 
Sbjct: 65  RNLPVSDIMTRP--VITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILRY 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 26/129 (20%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD------------YLRKIIVQGRSS 126
           ++   V  M ++ VG ++VV   +     G+IT RD              +K I   R +
Sbjct: 11  SLLHVVDEMEKNGVGRVIVVD--DNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA 68

Query: 127 K----------STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGM 176
                           DIMTEE   ITVSP+  V+ A +LM +  I  +PV+D+  ++G+
Sbjct: 69  GQKRYRYVKEVPLVAEDIMTEEI--ITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGV 126

Query: 177 VSIGDVVRA 185
           ++  D+ R 
Sbjct: 127 ITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.1 bits (159), Expect = 4e-14
 Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 11/107 (10%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           T  D ++ + ++ V  + VVK   +  + GIIT +D LR         +  ++  +MT +
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGE--LVGIITRKDLLRNP-------EEEQLALLMTRD 61

Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
               TVSPD  V  A +LM +N IR +PV+DD  ++G+V++ D+VRA
Sbjct: 62  --PPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 69.1 bits (169), Expect = 5e-14
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI----IVQGRSSKSTKV 131
           TD ++  A K + +H + AL V+   E + + GI+T+RD L+        + R  +   V
Sbjct: 260 TDTSIDHARKLLQEHRIKALPVLD--EHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTV 317

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
             IMT    ++TV PDT  +  +  + D  +  +PV+D  G ++G+VS  D++ A
Sbjct: 318 KGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAA 370

Length = 382

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.0 bits (159), Expect = 8e-14
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 14/122 (11%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR--------KIIVQGRSS 126
                + +A K M ++    L VV  G  K + GIIT  D L+          I  G   
Sbjct: 7   PPTTPIMEAAKIMVRNGFRRLPVVDEGTGK-LVGIITATDILKYLGGGEKFNKIKTGNGL 65

Query: 127 K--STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVV 183
           +  +  V  IMT    +IT++PD  +  A +LM + R+  +PV+DD G ++G+V+  D++
Sbjct: 66  EAINEPVRSIMTRN--VITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

Query: 184 RA 185
           +A
Sbjct: 124 KA 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.5 bits (160), Expect = 9e-14
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 36/143 (25%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------- 125
           C  DDT+ DA + + ++ +    V+  G+   + GI++E D L+ ++    S        
Sbjct: 6   CNADDTISDAARLLRENKISGAPVLDGGK---LVGIVSESDILKLLVTHDPSGNLWLPSP 62

Query: 126 -----------------------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRI 162
                                  +   KV DIMT+  K+IT+SPD  +  A +LM  ++I
Sbjct: 63  LELIELPLREFINWEETKRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKI 120

Query: 163 RHIPVIDDKGMIGMVSIGDVVRA 185
           + +PV++D  ++G+V+ GD++  
Sbjct: 121 KRLPVVEDGRLVGIVTRGDIIEG 143

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 13/119 (10%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII--------VQGRSSK 127
            DD++ DA + M +H +  L VV   E   + G++T+RD LR  +              +
Sbjct: 8   EDDSLADAEELMREHRIRHLPVVN--EDGKLVGLLTQRDLLRAALSSLSDNGEESLTKER 65

Query: 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
              V ++M     ++TV+PDT +  A ++M +N+I  +PV+DDKG ++G+++  D +R 
Sbjct: 66  DVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 15/119 (12%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII----VQGRSSK----- 127
           DD + +  +   +H    L+VV+  E   + G+I++RDYL+ I       G + K     
Sbjct: 9   DDRLEEVREIFEKHKFHHLLVVEDNE---LVGVISDRDYLKAISPFLGTAGETEKDLATL 65

Query: 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           + +   IMT     ITVSPDT V  A +L+ +N I  +PV+D+ G +IG+++  D+++ 
Sbjct: 66  NRRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           D TV + +  M         VV  G    + GI+T    +R++  +GR +    VGD+MT
Sbjct: 9   DLTVDEVLALMFGERHRGYPVVDDGR---LVGIVT-LADIRRVPAEGREAT-VLVGDVMT 63

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
                +T SPD  +  A++ M +  I  +PV+DD G ++G+VS  D++RA
Sbjct: 64  --RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 67.5 bits (166), Expect = 2e-13
 Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 10/114 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D T+ +A+  M ++ +  + VV   E   + GIIT RD +R       +  S  V +
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVD--ENGKLVGIITNRD-VRFE-----TDLSQPVSE 151

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           +MT+E  L+TV   T +  A++L+ ++RI  +PV+DD G + G++++ D+ +A 
Sbjct: 152 VMTKER-LVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204

Length = 486

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T D  V DA+  M+Q    + V+V   E+  + GI TERD +R +   G+      +G++
Sbjct: 7   TPDTPVADAIALMSQQGDSSCVLVV--EKGRLLGIFTERDIVR-LTAIGKDLSDLPIGEV 63

Query: 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           MT+    +  S    +  A+ L   ++IRH+PV+DD+G +IG+V+   + + 
Sbjct: 64  MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV 115

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 12/108 (11%)

Query: 78  DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
           D+V  A + M +H +G L VV   E   + GIIT RD +R      R+  +  V D MT 
Sbjct: 10  DSVGRAARLMEKHRIGGLPVV---EDGKLVGIITSRD-VR------RAHPNRLVADAMTR 59

Query: 138 ENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           E  ++T+SP+  +L A +LM + +I  +PV+ ++ ++G+++ G +   
Sbjct: 60  E--VVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIALE 105

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 57.9 bits (141), Expect = 7e-12
 Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 3/59 (5%)

Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
           V DIMT    ++TV PDT +  A++LM +N I  +PV+D+ G ++G+V++ D++RA++ 
Sbjct: 1   VKDIMTP--DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 31/111 (27%), Positives = 63/111 (56%), Gaps = 9/111 (8%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
           + TV D ++ M +  +  + VV+ G+    + GIIT+RD      ++    K   V ++M
Sbjct: 96  ETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRD------IRFVKDKGKPVSEVM 149

Query: 136 TEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           T E  +ITV     +  A++++ ++RI  +PV+D  G ++G++++ D+V+ 
Sbjct: 150 TREE-VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKR 199

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 23/131 (17%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI-------------- 119
              DDT+ D V+ +    +  + VV    +  V GI++E D +RKI              
Sbjct: 6   VKKDDTLRDVVEILLTGKISGVPVVD--NEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYS 63

Query: 120 -----IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
                  + +     KV +IMT+  K+ITV  DT +    ++M+   I+ +PV+DD  ++
Sbjct: 64  VIFLDESKIKKLLGKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLV 121

Query: 175 GMVSIGDVVRA 185
           G++S GD++R+
Sbjct: 122 GIISRGDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 12/119 (10%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR--------KIIVQGRSS 126
           T   T+ +A++ M +H +  L VV   E+  + GI+T+RD               +    
Sbjct: 7   TPTTTIAEALELMREHKIRHLPVVD--EEGRLVGIVTDRDLRDASPSPFTTLSEHELYLL 64

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
               V +IMT++  +ITV P   V  A  LM ++RI  +PV++D  ++G+++  D++R 
Sbjct: 65  LKMPVKEIMTKD--VITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLRT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 17/47 (36%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
            ++T++P T +  A++LM +++IRH+PV+D++G ++G+V+  D+  A
Sbjct: 2   DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDA 48

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
            +V D+  +  K +TVSPDT +  A  LM +N ++ +PV+D++G ++G+VS+ D+ RA +
Sbjct: 68  PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYM 125

Query: 188 SEHREE 193
                E
Sbjct: 126 DILDPE 131

Length = 546

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + +VYDA+ ++   +VG+L VV   E   + G+++ +D L+  I      +   VG IMT
Sbjct: 9   NTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMT 65

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
               + T +P+  VL A + + ++++  +PV++   
Sbjct: 66  RMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVD 101

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 25/64 (39%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH 190
           V DIMT++  +ITV PDT V  A+ LM++N +  +PV+DD  ++G+++  D++RA+ +  
Sbjct: 1   VKDIMTKD--VITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGG 58

Query: 191 REEL 194
           +  L
Sbjct: 59  KRLL 62

Length = 117

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 52.1 bits (126), Expect = 7e-10
 Identities = 19/47 (40%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           ++TVSPDT +  A++L+ +N IR +PV+D++G ++G+V+  D+++A+
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHREEL 194
            ++TVSPD  V  A++LM ++ I  +PV+DD G ++G+V+  D++RA+     + L
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL 57

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 12/114 (10%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS---KSTKV 131
             +  +  AV  M      AL VV   ++K + GIIT  D    ++     S   K  KV
Sbjct: 7   VLNTDIARAVAEMYTSGSRALPVVD--DKKRLVGIITRYD----VLSYALESEELKDAKV 60

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVR 184
            ++M   + +IT+  +  + +A  LM++N I  +PV+DDKG + G+V+  D++R
Sbjct: 61  REVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
             D ++ +A+  M ++N   ++V    E+  + G++T  D L   +    S    KV +I
Sbjct: 7   DEDASIREALHEMLKYNTNEIIVKDNEEK--LKGVVTFTDILD--LDLFESFLEKKVFNI 62

Query: 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVV 183
           +     +  V+ +  +  A+ +M + +I  +PV+DD  +IG+V   D++
Sbjct: 63  V--SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 13/121 (10%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV--------QGRS 125
           CT DD V      M +     L VV+  +   + GIIT RD +R   V        + ++
Sbjct: 6   CTPDDPVSKVWDLMLESGFTGLPVVQ--KAGELIGIITRRDIIRAGSVRTSVEDQQRTQT 63

Query: 126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVR 184
             S  V  IM+    + +V+PD  +  A++LM ++ I  +PV+++K  ++G+V   DV++
Sbjct: 64  KASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121

Query: 185 A 185
           A
Sbjct: 122 A 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSE 189
            ++TVSP+T V  A +LM DN I  +PV+DD G ++G+VS GD++R     
Sbjct: 3   DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELG 53

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           DDTV  A++ M ++ V  L VV  G    V G I E D L   +++G++  S  V ++M 
Sbjct: 9   DDTVSQAIERMREYGVSQLPVVDDGR---VVGSIDESD-LLDALIEGKAKFSLPVREVMG 64

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
           E   L TV PD  +    +L+  +R     V+D+ G
Sbjct: 65  E--PLPTVDPDAPIEELSELL--DRGNVAVVVDEGG 96

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           D  + + +  +         VV   +   + GI++  D +R+I+            DIMT
Sbjct: 9   DTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDD-IREILFDPSLYDLVVASDIMT 65

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG--MIGMVS 178
                + V P+  +  A++   D+    +PV+DD    ++G++S
Sbjct: 66  --KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILS 107

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 11/114 (9%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
             T D T+ +A+K M    V +L+VV    +  + GI++    L +   + +S     + 
Sbjct: 6   TITPDRTLAEAIKLMRDKKVDSLLVVDKDNK--LLGIVSLES-LEQAYKEAKS-----LE 57

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           DIM E+  + TV PD  +   + L+     +++PV+D+ G ++G+++   +V  
Sbjct: 58  DIMLED--VFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVDT 109

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 11/113 (9%)

Query: 75  TTDDTVYDAVKSMTQHNV-GALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
             + T+ +A +    H++ GA VV    +   + GI+T  D    I    R  +  KV D
Sbjct: 7   NPNATLREAARLFNTHHIHGAPVV----DDGKLVGIVTLSDIAHAI---ARGLELAKVKD 59

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM-IGMVSIGDVVRA 185
           +MT++  +IT+  D ++  A++LM  + +  + V DD+G  +G+++  D++R+
Sbjct: 60  VMTKD--VITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 10/109 (9%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           D ++ +A K M + N+  L VV   E   + GI+T  D + K + + +      V DIMT
Sbjct: 10  DASIKEAAKLMIEENINHLPVVD--EDGRLVGIVTSWD-ISKAVARDKK----SVEDIMT 62

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVR 184
               +IT +PD  +  A + M  + I  +PV+D +  +IG+++  D+ +
Sbjct: 63  R--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSE 189
            +ITV PD  V  A +LM +  I  + V+DD G ++G+ S  D+VR V   
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALR 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 20/49 (40%), Positives = 33/49 (67%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVS 188
             ITV+PDT ++ A++LM +N IR +PV+D   ++G+V+  D+  A  S
Sbjct: 2   NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPS 50

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 18/49 (36%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
           ++T+S D  +  A +LM ++RIRH+PV+++ G ++G+++  D++RA +S
Sbjct: 3   VVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALS 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             ++ DA+  +T+ N+G  V+    +   + GI T+ D LR++   G   +   + D+MT
Sbjct: 220 TASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGD-LRRVFDMGIDLRQASIADVMT 276

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVV 187
                I V P    + A+ LM    I  + V D   ++G++ + D++RA V
Sbjct: 277 PGG--IRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRAGV 325

Length = 326

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 29/161 (18%)

Query: 32  PVVSSRFESVSSARM-----EEHG----FESTTISD----ILKAKGKGA----DGSWLWC 74
           P+VS+  +SVS   M      E G    F S +I      + + K   A      S L  
Sbjct: 53  PLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNL-- 110

Query: 75  TTDDTVYDAV--KSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKV 131
           T D+T+ D +  K  T H+  A  V + G     + GI+T RDY        R S  TKV
Sbjct: 111 TPDNTLADVLDLKEKTGHSTVA--VTEDGTAHGKLLGIVTSRDYR-----ISRMSLDTKV 163

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
            D MT   KL+T +  T +  A  ++ D+++  +P++D  G
Sbjct: 164 KDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNG 204

Length = 502

>gnl|CDD|239991 cd04619, CBS_pair_6, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           T+  A K + +  +  +VV  P     +AG++T+ D +R++   G    +  V ++MT  
Sbjct: 11  TLQRAAKILGEPGIDLVVVCDPH--GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRA 68

Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRA 185
             +++  P   +    Q+M    +++IPV+D +   +G+++  D ++ 
Sbjct: 69  --VVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALKV 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 13/47 (27%), Positives = 31/47 (65%)

Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVV 187
           +++V+PD  V +A++ M +  +  +PV+DD  ++G +   D++ A++
Sbjct: 3   VVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALI 49

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVS 188
           ITVSPD +V  A +LM D+ I  +PVI+   ++G+V+  D+  A+ S
Sbjct: 4   ITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRS 50

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 94  ALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRA 153
             VVV    +    GII+  D LR I     +   T V  +MT   KL+TV  +  +   
Sbjct: 27  RFVVVDNEGR--YVGIISLAD-LRAIPTSQWAQ--TTVIQVMTPAAKLVTVLSEESLAEV 81

Query: 154 MQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVR 184
           ++L+ +  +  + V++D G +IG+++  D++R
Sbjct: 82  LKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 91  NVGALVVVKPGEQKSVA--GIITERDYLRKIIV----QGRSSKSTKVGDIMTEENKLITV 144
           N+G  V V P     +   G +  RD     I+    +  S    KV ++M++  KLITV
Sbjct: 128 NIGDSVRVGPTPVNKLVVEGKVIGRDDTANEILIDISKMVSIPKEKVKNLMSK--KLITV 185

Query: 145 SPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
            PD  +  A +L  +  IR  PV+DD  ++G++++ D+ +A+
Sbjct: 186 RPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAI 227

Length = 294

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 11/113 (9%)

Query: 76  TDDTVYDAVKSMTQHNV-GALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
            DDT+ +A K   +  + GA VV    +   + GIIT  D + K I  G      KV D 
Sbjct: 187 PDDTLREAAKLFYEKGIRGAPVV----DDDKIVGIITLSD-IAKAIANGN--LDAKVSDY 239

Query: 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAV 186
           M +   +IT++ D  +  A++LM  N +  + V D  G   G+++  D++  +
Sbjct: 240 MRKN--VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290

Length = 294

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 25/116 (21%)

Query: 108 GIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPV 167
           GI+T RD            KST V ++MT   KL+  +    +  A +++ ++R   +P+
Sbjct: 144 GIVTSRDIDF------VKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPI 197

Query: 168 IDDKG-MIGMVSIGDVVR------------------AVVSEHREELNRLNAFIQGG 204
           ++D G ++ +VS  D+ +                  A +S   E++ R  A I+ G
Sbjct: 198 VNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAG 253

Length = 495

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 27/172 (15%)

Query: 32  PVVSSRFESVSSARMEE-----------HGFEST----TISDILKAKGKGADGSWLWCTT 76
           P+VS+  ++V+ +RM             H   S          +K    G     +  + 
Sbjct: 38  PLVSANMDTVTESRMAIAMAREGGIGVIHKNMSIEEQAEEVRKVKRFESGFITDPVTVSP 97

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVA-GIITERDYLRKIIVQGRSSKSTKVGDIM 135
           D TV +A++   ++ +  + V + G+      GI T RD              +KV  +M
Sbjct: 98  DTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDIDF----------LSKVSVVM 147

Query: 136 TEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           T    L+T      +  A +++ +++I  +P++DD G ++G+++  D+ +A 
Sbjct: 148 TMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIEKAR 199

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
           LR ++    +   T V DIM  +  +I+VS D       +L     +  +PV+D++G ++
Sbjct: 43  LRDLL---LADPDTPVSDIMDTD--VISVSADDDQEEVARLFEKYDLLALPVVDEEGRLV 97

Query: 175 GMVSIGDVV 183
           G++++ DV+
Sbjct: 98  GIITVDDVI 106

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 7/113 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + DD++ D V  M    +  L V+   E+  V G ITE D +R ++    S +S +V +
Sbjct: 78  VSPDDSISDVVNLMRDKGISQLPVI---EEDKVVGSITENDIVRALLEGMESIRSLRVRE 134

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
           +M E     TVSPD  +    QL+ ++    + V+++  ++G+++  D+++ +
Sbjct: 135 VMGE--PFPTVSPDESLNVISQLLEEHPA--VLVVENGKVVGIITKADIMKLL 183

Length = 187

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 108 GIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPV 167
           GI+T RD          +   T + ++MT    L+       +  A +++ +++   +P+
Sbjct: 42  GIVTSRDI------DFLTDSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPI 95

Query: 168 IDDKG-MIGMVSIGDVVRA 185
           ++D G ++ +V+  D+ + 
Sbjct: 96  VNDDGELVALVTRSDLKKN 114

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239955 cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM-IGMVSIGDVVRA---VVSEH 190
            ITV PD  +  A+ LM D+ +R + V+D  G  +G V+  +  RA      +H
Sbjct: 3   PITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASGGCCGDH 56

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 106

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
             T DD++ DA + M +  VG L VV   +   + GI+TERD L+
Sbjct: 82  TITPDDSIKDAAELMLEKRVGGLPVVD--DDGKLVGIVTERDLLK 124

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD------------YLRKIIV 121
             +D+ V DA K M ++N+  L VV   E+  + G I+  D              R I  
Sbjct: 6   IDSDERVLDAFKLMRKNNISGLPVVD--EKGKLIGNISASDLKGLLLSPDDLLLYRTITF 63

Query: 122 QGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIG 180
           +  S K T       +   LIT +P + +   +  +  N++  + V+D++G  IG++++ 
Sbjct: 64  KELSEKFTD--SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLT 121

Query: 181 DVVR 184
           D++ 
Sbjct: 122 DIIS 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAVVS 188
           +TV P      A++++ +     +PV+D+ G I GMV++G+++ ++ S
Sbjct: 5   VTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS 52

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDV 182
           +K++++  D +VL A +LM  N I  +PV+D+KG +IG +S  D+
Sbjct: 1   SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDL 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           ++TV+PDT +  A  L+  +RI+ +PV+D    ++G+V+  D++R  
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA 50

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 17/114 (14%)

Query: 75  TTDDTVYDAVKSM--TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
           + D+TV D +K +  T H+ G  VV    +   V GI++ RD L K            V 
Sbjct: 8   SPDNTVKDVIKLIKETGHD-GFPVV----DNGKVVGIVSARDLLGK-------DPDETVE 55

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           +IM+++  L+   P+  ++ A ++M    I  +PV+D+   ++G+++  DV+R+
Sbjct: 56  EIMSKD--LVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIRS 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 21/98 (21%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
            T   V  A  ++ ++ + +  +    +Q+   G++T  D++   I++            
Sbjct: 7   DTKLPVKKAFNALVENGIRSAPLWDSRKQQ-FVGMLTITDFIL--ILR------------ 51

Query: 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
                 L+++ P+  +  A  L+  N+I  +PVID   
Sbjct: 52  ------LVSIHPERSLFDAALLLLKNKIHRLPVIDPST 83

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 25/103 (24%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           L  + D ++ DA++ + ++ +  ++VV   E   + G +T+ D +R+ +++G  S    V
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVD--ENGRLLGTVTDGD-IRRALLKG-LSLDDPV 60

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
            ++M        V    + + A  LM +  IRH+P++D++G +
Sbjct: 61  SEVMNRNPITAKVGSSREEILA--LMRERSIRHLPILDEEGRV 101

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
            +V D++    K +T  P+  +  A+ LM ++ IR +PV+DD G   G++++ D+   
Sbjct: 58  PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAEK 113

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
               DTV +A   M +H +G L VV+ G    + GIITE D LR
Sbjct: 80  VHPLDTVEEAALLMREHRIGCLPVVEDGR---LVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             +++ A++ +    +  + V +  E   V GI+++R  +  +    RS         + 
Sbjct: 9   TASLFQAIEILGSGGIHRVAVTE-EESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIP 67

Query: 137 ------EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM-IGMVSIGDV 182
                   + +I+++ D  ++ A+ LM +  I  + V+D++G  IG +S+ DV
Sbjct: 68  LRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           +  DA+  M++  +G+ +V     Q  + G+ T+ D LR+ ++ G S KS  V D MT  
Sbjct: 174 SFKDALLEMSEKRLGSAIVCDENNQ--LVGVFTDGD-LRRALLGGGSLKSE-VRDFMTLG 229

Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
            K  T   D  +L A++ +   +I  + V+DD  
Sbjct: 230 PK--TFKLDALLLEALEFLERRKITSLVVVDDHN 261

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
            LIT++P+  +  A +L   + I   PV+DD  ++G+V++ D+  A+
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAI 48

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +    D ++ +A++ M ++ +  L VV   E   + GI+T RD LR ++
Sbjct: 10  VTVPPDTSLEEALELMRENGISRLPVV--DEDGKLVGIVTLRDLLRALL 56

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHR 191
           ITV PDT V  A  +MT+N I  + V+D++  +G+++  D+V+ VVS + 
Sbjct: 4   ITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNL 53

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 102 EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNR 161
           E+  V GI+T +D   K          T +  +MT+    ITV+P T V     +M    
Sbjct: 33  EKNKVVGIVTSKDVAGK-------DPDTTIEKVMTKNP--ITVNPKTSVASVAHMMIWEG 83

Query: 162 IRHIPVIDD-KGMIGMVSIGDVVRA 185
           I  +PV+DD K ++G++S  DV++A
Sbjct: 84  IEMLPVVDDNKKLLGIISRQDVLKA 108

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
             +T +PD  V  A++ +  ++I   PV+DD G ++G +S  D ++ ++ 
Sbjct: 2   NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 10/54 (18%), Positives = 30/54 (55%)

Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHRE 192
           + + TV+P+T +  A+  M +  +  + V++   ++G+++  +V++A+      
Sbjct: 1   DTIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAG 54

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVS 178
           ITVSPD  V  A++LM +  I  +PV+DD G ++G+V+
Sbjct: 5   ITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVT 42

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG--MIGMVSIGDVVRAVVSEHR 191
            ++TV P T ++ A ++M  N  R +PV+D+    ++G+++  D+++ +    +
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEK 55

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
              +    + +A + + +   G+ +VV       V GIIT  D LR +        S  V
Sbjct: 4   PVLSATTPLREAAEQLIESKHGSALVVDRDGG--VVGIITLPDLLRALEADEAGEPSA-V 60

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM---IGMVSIGDVVRA 185
            ++ T    L+TV PD  +  A+  M    +R +PV+D       +G+++  +V+ A
Sbjct: 61  DEVATPP--LLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
             T+    +        ++ V + G   S + G +T+RD          + + TK+ ++M
Sbjct: 116 SSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRD------WDFVNDRETKLSEVM 169

Query: 136 TEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           T ++ L+T      +  A  ++ D++   +P++++ G ++ +V+  DV R 
Sbjct: 170 TSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220

Length = 505

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGD 181
           DIM+ +  ++TVS DT +  A +L+ ++RI+ +PV+D+   ++G+V+  D
Sbjct: 249 DIMSRD--VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRD 296

Length = 382

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
            + D T+ +A++ + ++ +  L VV   E+  + GI+T RD ++ + 
Sbjct: 5   VSPDTTLEEALELLRENGIRRLPVVD--EEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239967 cd04594, CBS_pair_EriC_assoc_archaea, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           I V    KV  A ++M +N +  +PV+D    +G V + D+  A
Sbjct: 4   IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENA 47

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 104

>gnl|CDD|239967 cd04594, CBS_pair_EriC_assoc_archaea, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
            D VY+A + M ++++ +L VV   +     G +    YL+ I     ++    V D + 
Sbjct: 9   YDKVYEAKRIMIENDLLSLPVV---DYNKFLGAV----YLKDI----ENATYGDVVDYIV 57

Query: 137 EENKLIT-VSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
              + I  V   +    A ++M  N+ R  PV+DD    G+V++  ++ A
Sbjct: 58  ---RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSILDA 104

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 104

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 23/105 (21%)

Query: 82  DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKL 141
            AV+ M   NV AL V+   +   ++GIITERD + K  V                    
Sbjct: 14  VAVRIMELANVKALPVL--DDDGKLSGIITERDLIAKSEV-------------------- 51

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           +T +  T V    Q M  NRI  IP+I+    +IG++   D+++ 
Sbjct: 52  VTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 12/112 (10%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           + DDTV DA+  + +   GA+VVV   E+    G++TE D        G   + T+V D+
Sbjct: 103 SPDDTVGDALALLPKRAHGAVVVV--DEEGRPVGVVTEAD------CAGVD-RFTQVRDV 153

Query: 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           M+ +  L+T+   T    A  L+   R++  PV+D  G ++G+++    +RA
Sbjct: 154 MSTD--LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRA 203

Length = 479

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 21/127 (16%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
             DD+V  A+  + +H +  L VV   +   + GI+T  D +  ++   R     + GD 
Sbjct: 7   REDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFVV---RDRDKARTGDR 61

Query: 135 MTEENKL-------------ITVSPDTKVLRAMQLMTDNRIRHIPVI---DDKGMIGMVS 178
             E+ ++             IT SP+  V  A+  M +N    + V+   DD  ++G+++
Sbjct: 62  SGEKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILT 121

Query: 179 IGDVVRA 185
             DV+RA
Sbjct: 122 KKDVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
                DTV + ++ + +     + V   G+  ++ GI+  +D LR ++            
Sbjct: 220 ALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALLDGQSD------L 272

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRAVVSEHR 191
           D+       + V     +   ++   + R     V+D   G+ G+V++ D++  +V E  
Sbjct: 273 DLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP 332

Query: 192 EE 193
           +E
Sbjct: 333 DE 334

Length = 429

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 102 EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNR 161
           E+  + G+++    LR ++    +     + D+M ++  +++V  D       +L     
Sbjct: 176 EKGKLLGVVS----LRDLL---TAEPDELLKDLMEDD--VVSVLADDDQEEVARLFEKYD 226

Query: 162 IRHIPVIDDKG-MIGMVSIGDVVRAVVSEHREE 193
           +  +PV+D+   +IG+++I D++  V+ E   E
Sbjct: 227 LLAVPVVDEDNRLIGIITIDDIID-VIEEEATE 258

Length = 451

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 23  IRLVNPMLRPVVSSRFESVSSARMEEHGF-------ESTTISDILKAKGKGADGSWLWCT 75
           I+L N    PV+S+ +++ + A M            +  T+ DI+      +     +  
Sbjct: 150 IKLANEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTS-----YLR 204

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
             DTV D +  + +       VV       V G++T RD L K         ST +  +M
Sbjct: 205 ETDTVEDWLDLVEKTGHSRFPVVN--RSMKVVGVVTMRDVLDK-------KPSTTIEKVM 255

Query: 136 TEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRA 185
           T+    ITV   T V    Q+M    I  +PV+D +  ++G+++  DV+++
Sbjct: 256 TKN--PITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKS 304

Length = 432

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 114 DYLRKIIVQGRSSKSTKVGDIMTE-ENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-K 171
           +Y+ + I +   S+      I        IT + D     A+QLM D R+  + V+D   
Sbjct: 224 EYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQN 283

Query: 172 GMIGMVSIGDVVRA 185
            ++G+V +  + +A
Sbjct: 284 KLVGVVDVESIKQA 297

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
             +T SPDT +  A +LMT++R+  + V+DD  ++G+V+  D+   VV+E
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE 51

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNR 196
           +TV  D  V   + LM   R R  PV+DD  ++G+V++ D +R V +E RE    
Sbjct: 4   VTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLAD-IRRVPAEGREATVL 57

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
             IT+ P   V RA +LM  +RI  +PV++D  ++G+++  DV RA
Sbjct: 2   DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRA 47

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 19/111 (17%)

Query: 81  YDAVKSMTQHNVGALV----------VVKPGEQKSVAGIITERD--YLRKIIVQGRSSKS 128
            D   +  +  V  L+          V++  ++  V  I T  D     ++I Q     S
Sbjct: 191 EDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLINQ-----S 245

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVS 178
             V  IMT E+ L+T S D  +    ++M  +R R  PV+D+ G ++G++S
Sbjct: 246 IPVSYIMTTED-LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVIS 295

Length = 546

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 47  EEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
           E    ++TT+ D++           +  T DD V +A + M +H V  L VV   +   +
Sbjct: 51  EGRDPDTTTVGDVMT-------RGVVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRL 101

Query: 107 AGIITERDYLRK 118
            GI++  D  R 
Sbjct: 102 VGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           K + VSPD  +L A++ +  N +R + V+D+ G ++G V+ GD+ RA
Sbjct: 3   KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRA 49

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
           IT + D  +  A +L+ +N+I   PV+D   ++G+VS  D+++ +V+ 
Sbjct: 4   ITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTH 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
            IM     +++VSPD  +   + LM D  I  +PVI++  ++G ++  D+VRA+
Sbjct: 69  TIMHSP--VVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRAL 120

Length = 187

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
             + D+   K             D ++ +A   M ++NV  L VV    +  + G+++  
Sbjct: 68  PQVRDLEIDKPVTVS-------PDTSLKEAWNLMDENNVKTLPVVDEEGK--LLGLVSLS 118

Query: 114 DYLRKIIVQGRSSKSTKVG 132
           D  R  +        +K  
Sbjct: 119 DLARAYMDILDPEILSKSP 137

Length = 546

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
            ++T+S D  +  A +LM +  I H+PV+D+ G ++G+V+  D+ +AV 
Sbjct: 3   PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
           ITV  D  V +A+ ++ ++ I  +PV+DD G + G+V+  D+V  VV 
Sbjct: 4   ITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVR 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
              +V DA+  +++  +G + V     Q+ V G+ T+ D LR+ +V G  + +T V + M
Sbjct: 214 LTASVMDAMLELSRTGLGLVAVCD--AQQQVQGVFTDGD-LRRWLVGG-GALTTPVNEAM 269

Query: 136 TEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           T      T+   ++ + A +++   +I   PV+D+ G + G +++ D  +A
Sbjct: 270 TRGG--TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318

Length = 321

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRAVVSE 189
           +TV PDT +  A +LM +  +  + V+D D+  IG+V+  D+VRAV + 
Sbjct: 4   VTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           ITV  D  +   ++++   +I  +PV+D++G ++G+VS GD++R +
Sbjct: 4   ITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKI 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 11/53 (20%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 143 TVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHREEL 194
            +S  T +  A + + +++     V+D  G ++G++++ D++RA+ ++   E 
Sbjct: 5   VLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEP 57

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 17/52 (32%), Positives = 33/52 (63%)

Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHR 191
            ++TVSPD  +  A +LM ++ +  +PV ++  ++G+V+  D+V   V+E R
Sbjct: 2   DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGR 53

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           ++T  PDT +  A   M + RI  I V+DD   +G+V+  D++R 
Sbjct: 3   ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRL 47

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           + T  PDT ++  + ++ + R+  +P++D+ G ++ + S  DV+   
Sbjct: 3   IATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDV 182
           +TV+PDT +  A+ LM    I  +PV+D+ G ++G+++  DV
Sbjct: 98  VTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDV 139

Length = 486

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 48  EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
             G E   + D++       D        D+ +YDA++ M +HNVG L+V    E + V 
Sbjct: 49  ARGLELAKVKDVMTKDVITIDE-------DEQLYDAIRLMNKHNVGRLIVTD-DEGRPV- 99

Query: 108 GIITERDYLR 117
           GIIT  D LR
Sbjct: 100 GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
COG2524	294	Predicted transcriptional regulator, contains C-te	99.83
COG4109	432	Predicted transcriptional regulator containing CBS	99.81
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.79
COG3620	187	Predicted transcriptional regulator with C-termina	99.78
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.77
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.76
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.76
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.75
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.74
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.74
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.74
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.73
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.73
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.73
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.73
COG2905	610	Predicted signal-transduction protein containing c	99.72
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.71
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.71
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.7
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.7
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.7
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.7
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.7
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.69
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.69
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.69
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.69
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.69
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.69
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.68
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.68
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.68
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.68
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.68
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.68
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.68
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.68
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.68
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.68
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.68
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.68
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.68
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.68
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.67
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.67
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.67
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.67
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.67
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.67
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.67
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.67
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.66
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.66
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.66
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.66
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.65
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.65
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.65
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.65
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.65
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.64
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.64
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.64
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.64
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.63
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.63
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.63
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.62
PRK11573	413	hypothetical protein; Provisional	99.62
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.62
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.61
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.61
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.61
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.61
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.6
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.59
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.59
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.59
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.58
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.58
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.57
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.57
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.56
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.55
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.55
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.54
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.51
COG0517	117	FOG: CBS domain [General function prediction only]	99.51
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.48
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.44
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.35
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.23
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.2
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.1
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.09
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.09
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.01
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.88
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.87
COG3620	187	Predicted transcriptional regulator with C-termina	98.75
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.64
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.59
COG2524	294	Predicted transcriptional regulator, contains C-te	98.57
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.52
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.48
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.44
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.4
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.37
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.37
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.35
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.32
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.31
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.31
PRK11573	413	hypothetical protein; Provisional	98.3
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.3
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.29
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.29
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.28
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.28
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.28
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.27
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.25
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.24
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.24
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.24
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.22
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.21
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.21
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.21
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.21
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.2
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.2
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.19
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.19
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.19
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.19
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.18
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.18
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.17
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.17
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.17
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.17
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.16
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.16
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.16
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.16
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.15
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.14
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.14
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.14
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.14
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.14
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.13
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.12
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.12
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.12
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.11
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.11
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.11
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.11
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.11
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.1
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.1
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.08
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.08
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.08
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.07
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.07
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.07
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.06
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.06
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.05
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.04
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.04
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.02
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.02
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.02
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.01
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.99
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.96
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.92
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.91
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.91
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.85
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.85
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.84
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.79
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.79
COG0517	117	FOG: CBS domain [General function prediction only]	97.75
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.7
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.67
COG4109	432	Predicted transcriptional regulator containing CBS	97.66
COG2905	610	Predicted signal-transduction protein containing c	97.59
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.55
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.39
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.31
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.16
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	97.15
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.1
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.99
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	95.7
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.54
KOG2118	498	consensus Predicted membrane protein, contains two	95.08
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.44
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	94.14
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.54
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	89.78
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	88.4
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	86.21

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.83  E-value=9.6e-20  Score=140.14  Aligned_cols=123  Identities=24%  Similarity=0.457  Sum_probs=111.3

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      ....+|+++|.++       +.++.+++|+.+++++|.+++++..||+  |++ +++|++|..|+..++ .++  ..+.+
T Consensus       169 iPk~~V~~~~s~~-------~i~v~~d~tl~eaak~f~~~~i~GaPVv--d~d-k~vGiit~~dI~~ai-a~g--~~~~k  235 (294)
T COG2524         169 IPKEKVKNLMSKK-------LITVRPDDTLREAAKLFYEKGIRGAPVV--DDD-KIVGIITLSDIAKAI-ANG--NLDAK  235 (294)
T ss_pred             cCcchhhhhccCC-------ceEecCCccHHHHHHHHHHcCccCCcee--cCC-ceEEEEEHHHHHHHH-HcC--Ccccc
Confidence            4678999999997       9999999999999999999999999999  544 999999999977654 443  24789


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee-CCeEEEEEeHHHHHHHHHh
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~-~~~~vGiIt~~dil~~l~~  188 (205)
                      |+++|++.  +++++.|+.+.+|+++|..++++++.|+| +|+.+|+||++|++..+..
T Consensus       236 V~~~M~k~--vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         236 VSDYMRKN--VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             HHHHhccC--CceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence            99999996  99999999999999999999999999999 5999999999999998753

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.81  E-value=2.4e-19  Score=143.45  Aligned_cols=164  Identities=26%  Similarity=0.388  Sum_probs=144.0

Q ss_pred             HHhhcCCCCccccccccccccccccccccc-------ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCe
Q 028667           22 RIRLVNPMLRPVVSSRFESVSSARMEEHGF-------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA   94 (205)
Q Consensus        22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~   94 (205)
                      .+...+....|.+.++|+++.-+.+.++++       +-.+|.|+|.|.++     ..++.+++++.+..++..+.++++
T Consensus       149 vi~lAne~~lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~-----~~yL~~~d~v~d~~~l~~kt~~sR  223 (432)
T COG4109         149 VIKLANEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLED-----TSYLRETDTVEDWLDLVEKTGHSR  223 (432)
T ss_pred             HHHhhcccCCceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhcccccc-----ceeccccccHHHHHHHHHHcCCCc
Confidence            445677888899999999999888888775       34789999998755     899999999999999999999999


Q ss_pred             EEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeE
Q 028667           95 LVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGM  173 (205)
Q Consensus        95 ~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~  173 (205)
                      |||+  |...+++|+|+.+|+..       ..+..++..+|+++  |.++.+.+++..+.+.|.-.++..+||+++ .++
T Consensus       224 fPVv--n~~~kvvGvVt~rDv~~-------~~~~t~ieKVMtkn--p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~l  292 (432)
T COG4109         224 FPVV--NRSMKVVGVVTMRDVLD-------KKPSTTIEKVMTKN--PITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTL  292 (432)
T ss_pred             ccee--cccceEEEEEEehhhhc-------CCCCccHHHHhccC--CeeecccchHHHHHHHHHhccceeeeEEcCCceE
Confidence            9999  89999999999999875       45688999999996  999999999999999999999999999998 799


Q ss_pred             EEEEeHHHHHHHHHhhhhHH--HHHHHhhh
Q 028667          174 IGMVSIGDVVRAVVSEHREE--LNRLNAFI  201 (205)
Q Consensus       174 vGiIt~~dil~~l~~~~~~~--~~~l~~~i  201 (205)
                      +|+||++|+++.+.....+-  .+++++.|
T Consensus       293 lGiitR~dvlk~lq~~q~qpqvget~~d~I  322 (432)
T COG4109         293 LGIITRQDVLKSLQMIQRQPQVGETISDQI  322 (432)
T ss_pred             EEEEEHHHHHHHHHHhccCCcccccHHHHH
Confidence            99999999999998665543  55555544

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.79  E-value=1.5e-18  Score=136.05  Aligned_cols=169  Identities=23%  Similarity=0.357  Sum_probs=131.2

Q ss_pred             CcchHHHHHHHhhcCCCCcccccc--cccccccccccccccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhc
Q 028667           13 NIVKSAVLQRIRLVNPMLRPVVSS--RFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH   90 (205)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~   90 (205)
                      .+.++++-..|+..+..+--....  ..-...+.+...+.+..++++|+|.++       ++++++++++.+|.++|.++
T Consensus       202 gfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSrd-------Vvtv~~~ts~dhA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSRD-------VVTVSTDTSIDHARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCcc-------ceecCCcCChHHHHHHHHHc
Confidence            456666766666655443111000  011112222334446789999999998       99999999999999999999


Q ss_pred             CCCeEEEEecCCCCceEEEEehHHHHHHHH----HcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEE
Q 028667           91 NVGALVVVKPGEQKSVAGIITERDYLRKII----VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIP  166 (205)
Q Consensus        91 ~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~----~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~p  166 (205)
                      +++.+||+  |++.+++|+|+.+|+++..-    +.-.......++.+|++.  ..++.++++..+.+-.|.+.+.+.+|
T Consensus       275 ~ikaLPV~--d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~--v~tv~pdtpa~~lvp~lad~g~H~lp  350 (382)
T COG3448         275 RIKALPVL--DEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTP--VVTVRPDTPAVELVPRLADEGLHALP  350 (382)
T ss_pred             Cccccccc--ccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCc--ceeecCCCcHHHHHHHhhcCCcceee
Confidence            99999999  89999999999999887321    111123466899999974  99999999999999999999999999


Q ss_pred             EeeC-CeEEEEEeHHHHHHHHHhhhhH
Q 028667          167 VIDD-KGMIGMVSIGDVVRAVVSEHRE  192 (205)
Q Consensus       167 Vv~~-~~~vGiIt~~dil~~l~~~~~~  192 (205)
                      |+|+ |+++||||++|++.++.+....
T Consensus       351 vld~~g~lvGIvsQtDliaal~r~~~~  377 (382)
T COG3448         351 VLDAAGKLVGIVSQTDLIAALYRNWSQ  377 (382)
T ss_pred             EEcCCCcEEEEeeHHHHHHHHHHHHHH
Confidence            9998 9999999999999999877543

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.78  E-value=2.7e-18  Score=123.12  Aligned_cols=123  Identities=25%  Similarity=0.435  Sum_probs=111.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ..++++.+|+..       ++.+.|++++.+++++|.+++++++||+  + +++++|-||.+++.+.++..........+
T Consensus        63 ~~ita~~iM~sp-------vv~v~pdDsi~~vv~lM~~~g~SQlPVi--~-~~k~VGsItE~~iv~~~le~~e~i~~~~v  132 (187)
T COG3620          63 TRITAKTIMHSP-------VVSVSPDDSISDVVNLMRDKGISQLPVI--E-EDKVVGSITENDIVRALLEGMESIRSLRV  132 (187)
T ss_pred             ceEeHhhhccCC-------eeEECchhhHHHHHHHHHHcCCccCcee--e-CCeeeeeecHHHHHHHHhccccchhhhhH
Confidence            568899999986       9999999999999999999999999999  4 49999999999998888777666667889


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~  188 (205)
                      .++|..  +++++++++++.-+.+++.+++.  +.|+++|+++|+||+.|+++.+.+
T Consensus       133 r~vM~e--~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         133 REVMGE--PFPTVSPDESLNVISQLLEEHPA--VLVVENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             HHHhcC--CCCcCCCCCCHHHHHHHHhhCCe--EEEEeCCceEEEEeHHHHHHHHhc
Confidence            999988  49999999999999999998755  778888999999999999998764

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.77  E-value=1.1e-17  Score=138.08  Aligned_cols=122  Identities=25%  Similarity=0.440  Sum_probs=107.4

Q ss_pred             ccccHhHHhhh--cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           52 ESTTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        52 ~~~~v~d~m~~--~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      ...+|+++|.+  +       ++++++++++.++++.|.+++.+.+||+  +++|+++|+|+.+|+.+ +...+..+...
T Consensus       200 ~~~~V~dim~~~~~-------~~~v~~~~sl~~a~~~~~~~~~~~~vVv--d~~g~lvGivt~~Dl~~-~~~~~~~~~~~  269 (326)
T PRK10892        200 LLLRVSDIMHTGDE-------IPHVSKTASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGDLRR-VFDMGIDLRQA  269 (326)
T ss_pred             ccCcHHHHhCCCCC-------CeEECCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEecHHHHH-HHhcCCCcccC
Confidence            67789999996  4       8999999999999999998888888888  88999999999999765 44433233456


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHH
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA  185 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~  185 (205)
                      +++++|++.  ++++.+++++.+|++.|.+++.+++||+++|+++|+||++|+++.
T Consensus       270 ~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~  323 (326)
T PRK10892        270 SIADVMTPG--GIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CHHHhcCCC--CEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence            899999885  899999999999999999999999999999999999999999874

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.76  E-value=2.2e-17  Score=115.58  Aligned_cols=110  Identities=21%  Similarity=0.394  Sum_probs=96.8

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..+.+++++.++.+.|.+.+...+||+  |++|+++|+++.+++++.+..........++.++|...  ++++++++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l   78 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVC--DPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRA--VVSCRPGDLL   78 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCC--CeeECCCCCH
Confidence            6789999999999999999999999999  88999999999999876554322233456899999875  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .+|++.|.+++.+++||+++ |+++|+|+++|+++
T Consensus        79 ~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          79 HDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            99999999999999999986 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.76  E-value=3.1e-17  Score=114.71  Aligned_cols=110  Identities=35%  Similarity=0.562  Sum_probs=97.0

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      ++.+.+++++.++++.|.+.+.+.+||+  +++ |+++|+++.+|+++.+..........++.++|...  +++++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~   78 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVE--KRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKP--LISVSPDMD   78 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEE--ECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCC--CeeECCCCC
Confidence            7899999999999999998899999999  676 89999999999887665543233346789999774  899999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+++...+||+++|+++|+|+..|+++
T Consensus        79 l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~  113 (114)
T cd04630          79 IKYCARLMERTNIRRAPVVENNELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhc
Confidence            99999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.75  E-value=2.1e-17  Score=141.46  Aligned_cols=132  Identities=19%  Similarity=0.373  Sum_probs=116.1

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHh-----cCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS  125 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~-----~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~  125 (205)
                      |.+.+++++|.++       +.++++++|+.++.+.|++     .+...+||+  |++++++|+|+.+|++..       
T Consensus       128 ~~e~tvg~iMt~~-------~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv--d~~~~l~GvV~l~dLl~a-------  191 (449)
T TIGR00400       128 YSDDSAGRIMTIE-------YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT--NESKHLKGVLSIRDLILA-------  191 (449)
T ss_pred             CCcchHHHhCcCc-------eEEECCCCcHHHHHHHHHhcCCCccceeEEEEE--CCCCeEEEEEEHHHHhcC-------
Confidence            7889999999986       8999999999999999975     345678999  888999999999997641       


Q ss_pred             CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHhh
Q 028667          126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNAF  200 (205)
Q Consensus       126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~~  200 (205)
                      ..+.+++++|++.  +.++++++++.+|++.|.+++...+||+|+ |+++|+||.+|+++.+.+...++..+....
T Consensus       192 ~~~~~v~~im~~~--~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ed~~~~~gv  265 (449)
T TIGR00400       192 KPEEILSSIMRSS--VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEATEDFYMIAAV  265 (449)
T ss_pred             CCCCcHHHHhCCC--CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhHHHHHHhcCC
Confidence            2456899999985  889999999999999999999999999997 999999999999999998888777766644

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.74  E-value=1.1e-16  Score=111.17  Aligned_cols=111  Identities=46%  Similarity=0.736  Sum_probs=96.7

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      ++..++++.++.++.+.|.+.+.+.+||+  +++++++|+++.+++++.+..........++.++|.+.  +.+++++++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~   77 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVV--DDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRN--VITVTPDDT   77 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCC--cEEECCCCc
Confidence            37889999999999999999999999999  78899999999999887654433222245789999774  899999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+.+..++||+++|+++|+|+..|+++
T Consensus        78 ~~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~  112 (113)
T cd04623          78 VDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhhc
Confidence            99999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.74  E-value=8.5e-17  Score=112.10  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=93.5

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +.++.+++++.++.+.|.+.+.+.+||+  +++|+++|+|+..|+.+. .  .......++.++|...  +.++++++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~-~--~~~~~~~~v~~~~~~~--~~~v~~~~~l   75 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVV--DEENKVLGQVTLSDLLEI-G--PNDYETLKVCEVYIVP--VPIVYCDSKV   75 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHhh-c--cccccccChhheeecC--CcEECCCCcH
Confidence            7889999999999999998889999999  888999999999997652 1  1122245789999874  8899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .+|++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus        76 ~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          76 TDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999999987 99999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.74  E-value=6.3e-17  Score=133.17  Aligned_cols=122  Identities=20%  Similarity=0.394  Sum_probs=106.6

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~  132 (205)
                      ..+|+++|.++.+     ++++++++++.++.+.|...+...+||+  |++|+++|+|+..|+.+.+.. + .....++.
T Consensus       196 ~~~V~~im~~~~~-----~~~v~~~~sv~~a~~~~~~~~~~~~~Vv--d~~g~~iG~vt~~dl~~~~~~-~-~~~~~~v~  266 (321)
T PRK11543        196 LNKVHHLMRRDDA-----IPQVALTASVMDAMLELSRTGLGLVAVC--DAQQQVQGVFTDGDLRRWLVG-G-GALTTPVN  266 (321)
T ss_pred             HhHHHHHhccCCC-----CcEeCCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEecHHHHHHHHhC-C-CCcCCcHH
Confidence            6899999998532     7899999999999999988888999999  889999999999997664432 2 12356799


Q ss_pred             cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHH
Q 028667          133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRA  185 (205)
Q Consensus       133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~  185 (205)
                      ++|++.  ++++.+++++.+|++.|.+++..++||+++ |+++|+||++|++++
T Consensus       267 ~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        267 EAMTRG--GTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             HhcCCC--CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            999885  889999999999999999999999999996 899999999999864

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.73  E-value=3e-17  Score=133.01  Aligned_cols=132  Identities=18%  Similarity=0.384  Sum_probs=113.4

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      |.+.+|+++|.+..+     ++++++++++.++.+.+.+++++.+||+  +++ ++++|+|+.+|++..+ ..+  ....
T Consensus        64 l~~~~V~diMtpr~~-----i~~l~~~~sl~e~~~~i~~~~~sr~PV~--~~~~d~iiGiv~~kDll~~~-~~~--~~~~  133 (292)
T PRK15094         64 IADQRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFM-RSD--AEAF  133 (292)
T ss_pred             cCCCEEeEEccchHH-----EEEEeCCCCHHHHHHHHHhcCCcEEEEe--cCCCCcEEEEEEHHHHHhHh-hcc--CCcC
Confidence            788999999998433     8999999999999999999999999999  555 7999999999987543 211  1234


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHH
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELN  195 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~  195 (205)
                      .+.++|++   +.++++++++.++++.|.+++.+.+||+|+ |.++|+||.+|+++.+.+...++..
T Consensus       134 ~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d  197 (292)
T PRK15094        134 SMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYD  197 (292)
T ss_pred             CHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccc
Confidence            58899987   679999999999999999999999999998 8999999999999999987665443

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.73  E-value=1.8e-16  Score=111.58  Aligned_cols=111  Identities=25%  Similarity=0.488  Sum_probs=95.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +.++++++++.++++.|..++...+||+  |++|+++|+|+..++++..... ......+++++|...+++.++++++++
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCCCCCcEEECCCCcH
Confidence            7899999999999999999999999999  7889999999999987765432 223356788999741138899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC----CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD----KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~----~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+++||+++    |+++|+||++|+++
T Consensus        80 ~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999999999999986    48999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.73  E-value=4.8e-17  Score=143.41  Aligned_cols=168  Identities=14%  Similarity=0.230  Sum_probs=131.8

Q ss_pred             hcCCcchHHHHHHHhhcCCCCcccccccc-----------cccccc-------cccccccccccHhHHhhhcCCCCCCCc
Q 028667           10 SHGNIVKSAVLQRIRLVNPMLRPVVSSRF-----------ESVSSA-------RMEEHGFESTTISDILKAKGKGADGSW   71 (205)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~-------~~~~~~~~~~~v~d~m~~~~~~~~~~~   71 (205)
                      -++|++.--+..|++.......|.+....           .+..+.       ......+...+|+|+|+++       +
T Consensus       385 ~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~~~~~~L~~~~V~dim~~~-------~  457 (574)
T PRK01862        385 TQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDEAERERLRTTQMRELIQPA-------Q  457 (574)
T ss_pred             HccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhccccchhhHHhhCcHHHHhcCC-------C
Confidence            46788888888888766666666544420           011111       1112236789999999987       8


Q ss_pred             eEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHH
Q 028667           72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVL  151 (205)
Q Consensus        72 ~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~  151 (205)
                      ..+++++++.++.+.+.+++.+.+||+  |++++++|+|+.+|+.+.+.... ...+.++.++|++.  ++++++++++.
T Consensus       458 ~~v~~~~tl~ea~~~l~~~~~~~~~Vv--D~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim~~~--~~~v~~d~~L~  532 (574)
T PRK01862        458 TVVPPTASVADMTRVFLEYPVKYLYVV--DDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYAHTP--FPLLTPDMPLG  532 (574)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCceEEEE--cCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhccCC--CeeECCCCCHH
Confidence            889999999999999999999999999  88999999999999876543322 22346789999885  89999999999


Q ss_pred             HHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHHHHHhh
Q 028667          152 RAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       152 ~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~~l~~~  189 (205)
                      ++++.|.+++.+.+||+|+   ++++|+||++|+++.+.+.
T Consensus       533 ~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~~  573 (574)
T PRK01862        533 DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRRM  573 (574)
T ss_pred             HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHhh
Confidence            9999999999999999986   3899999999999998653

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.73  E-value=1.7e-16  Score=111.93  Aligned_cols=111  Identities=22%  Similarity=0.345  Sum_probs=90.5

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc------ccccCCceEE
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD------IMTEENKLIT  143 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~------im~~~~~~~~  143 (205)
                      ++.++++++++.++.+.|.+++.+.+||+  +++|+++|+++.+|++..+..........++.+      .|..  ++.+
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv--~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   77 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIV--DENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRT   77 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeE
Confidence            48899999999999999999999999999  789999999999998864432211111122333      2222  3789


Q ss_pred             EcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          144 VSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       144 v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +++++++.++++.|.+++.+.+||+++ |+++|+||++|+++
T Consensus        78 v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          78 CSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             EcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999999999999997 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.72  E-value=3e-17  Score=138.61  Aligned_cols=162  Identities=26%  Similarity=0.469  Sum_probs=139.4

Q ss_pred             cchHHHHHHHhhcCCCCccccccccccccc---ccccc---cccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHH
Q 028667           14 IVKSAVLQRIRLVNPMLRPVVSSRFESVSS---ARMEE---HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM   87 (205)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~   87 (205)
                      +.|.++|.++...++.|..++.+....+..   .+..+   ..+-..+|++++..+       ++++++..++.+|++.|
T Consensus       103 ~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~-------~~~v~~~~~i~~aa~km  175 (610)
T COG2905         103 LLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLP-------AVTVSPQASIQDAARKM  175 (610)
T ss_pred             ecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCC-------CcccCccCcHHHHHHHH
Confidence            578899999999999997777655443221   11222   225567888888886       99999999999999999


Q ss_pred             HhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEE
Q 028667           88 TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPV  167 (205)
Q Consensus        88 ~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV  167 (205)
                      .+.+.+.+.++  ++++...|+||.+|+..+++..+.. ...+|+.+|+.  ++.+++..+.+.+|+-.|.+.++.++||
T Consensus       176 ~~~gv~s~v~l--~~~~~~~GIvT~~dl~~~v~~~g~~-~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V  250 (610)
T COG2905         176 KDEGVSSLVVL--DDSGPLLGIVTRKDLRSRVIADGRS-KTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPV  250 (610)
T ss_pred             HhcCCCeEEEE--cCCCCccceeehHHHHHHHHhcCCC-cccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeee
Confidence            99999999999  8899999999999999999887754 57899999998  4999999999999999999999999999


Q ss_pred             eeCCeEEEEEeHHHHHHHHH
Q 028667          168 IDDKGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       168 v~~~~~vGiIt~~dil~~l~  187 (205)
                      +++|+++|+||.+||++...
T Consensus       251 ~e~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         251 TEDGQPLGILTLTDILRLFS  270 (610)
T ss_pred             ecCCeeeEEeeHHHHHHhhC
Confidence            99999999999999999877

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=4.6e-16  Score=108.13  Aligned_cols=109  Identities=28%  Similarity=0.508  Sum_probs=92.6

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      ++.+.+++++.++++.|.+++...++|.  + +|+++|+++.+++++.+...+......++.++|...  +.++++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l   77 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVM--E-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPE--PIVASPDDSI   77 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEe--e-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCC--CeEECCCCCH
Confidence            7889999999999999987777777766  4 589999999999877654322222346799999874  8899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++...+||+++|+++|+||.+|+++
T Consensus        78 ~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~  111 (112)
T cd04625          78 DEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence            9999999999999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=4.4e-16  Score=112.53  Aligned_cols=111  Identities=30%  Similarity=0.499  Sum_probs=95.5

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCC----------------------C
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----------------------K  127 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~----------------------~  127 (205)
                      +++++.+++++.++++.|.+.+.+.+||+  |++|+++|+++..++++.+.......                      .
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVV--DDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEE--CCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            37889999999999999999999999999  88899999999999887543211110                      1


Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      ..++.++|.+.  +..+.+++++.++++.|.+.+.+++||+++|+++|+|+..|+++
T Consensus        80 ~~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTEE--IITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCCC--CeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence            34789999874  88999999999999999999999999999999999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.1e-16  Score=135.36  Aligned_cols=171  Identities=19%  Similarity=0.362  Sum_probs=139.6

Q ss_pred             cCCcchHHHHHHHhhcCCCCccccccccccccccccccc-ccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHh
Q 028667           11 HGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEH-GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ   89 (205)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~   89 (205)
                      .+++.+++....+.+........+.+............. .|.+.+++.+|...       ++.+.++.|+.+++..+++
T Consensus        88 ie~m~~Dd~~~ll~elp~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e-------~v~l~~~~Tv~~al~~ir~  160 (451)
T COG2239          88 IEELDIDDAADLLDELPDEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTE-------FVTLPEDVTVDEALDRIRE  160 (451)
T ss_pred             HHhcCcHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceee-------eEEeccCcCHHHHHHHHHH
Confidence            344445555555555555554444444443333333222 37889999999997       9999999999999999985


Q ss_pred             c-----CCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCE
Q 028667           90 H-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRH  164 (205)
Q Consensus        90 ~-----~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~  164 (205)
                      .     ....++|+  |+++++.|+++.++++.       ..++.++.++|.+.  +..+.++++.+++.++|++++.-.
T Consensus       161 ~~~~~e~~~~lyVv--D~~~~L~Gvvsl~~Ll~-------a~~~~~i~~im~~~--~~~V~~~~dqeevA~~~~~ydl~a  229 (451)
T COG2239         161 RAEDAETIYYLYVV--DEKGKLLGVVSLRDLLT-------AEPDELLKDLMEDD--VVSVLADDDQEEVARLFEKYDLLA  229 (451)
T ss_pred             hcccccccceEEEE--CCccceEEEeeHHHHhc-------CCcHhHHHHHhccc--ceeecccCCHHHHHHHHHHhCCee
Confidence            3     46889999  89999999999999875       35678999999996  999999999999999999999999


Q ss_pred             EEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHh
Q 028667          165 IPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNA  199 (205)
Q Consensus       165 ~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~  199 (205)
                      +||+|+ ++++|+||..|++..+.++..++..++.+
T Consensus       230 ~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G  265 (451)
T COG2239         230 VPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAG  265 (451)
T ss_pred             cceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence            999998 89999999999999999999999999887

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.70  E-value=3.4e-16  Score=109.03  Aligned_cols=110  Identities=31%  Similarity=0.501  Sum_probs=96.1

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC-CCCcCccccccccCCceEEEcCCCc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-SSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~-~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      +..++++.++.++.+.|.+.+.+.+||+  +++++++|+|+..++++.+..... .....++.++|.+.  +..+.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~   78 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKSKISGGPVV--DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTE--VLTVSPDDS   78 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhcCCCCccEE--CCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccC--ceEECCCCc
Confidence            7889999999999999988888999999  888999999999998876543221 12356789999874  889999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+++.+++||+++|+++|+||.+|+++
T Consensus        79 l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~  113 (114)
T cd04629          79 IVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence            99999999999999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.70  E-value=7e-16  Score=107.52  Aligned_cols=108  Identities=23%  Similarity=0.474  Sum_probs=94.5

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..++++.++.++++.|.+.+.+.+||+  +++|+++|+++.+|+++.+...  .....++.++|.+.  +.++++++++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~~~--~~~~~~v~~~~~~~--~~~v~~~~~l   77 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVV--DENGRLLGTVTDGDIRRALLKG--LSLDDPVSEVMNRN--PITAKVGSSR   77 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEE--CCCCCEEEEEEcHHHHHHHhcC--CCcCCCHHHhhcCC--CEEEcCCCCH
Confidence            6789999999999999998899999999  8889999999999987654422  12345789999874  8899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+++||+++ |+++|+||.+|+++
T Consensus        78 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          78 EEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            99999999999999999986 89999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.70  E-value=4.8e-16  Score=109.96  Aligned_cols=111  Identities=33%  Similarity=0.598  Sum_probs=95.2

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------CCCcCccccccccCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------SSKSTKVGDIMTEENK  140 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---------~~~~~~v~~im~~~~~  140 (205)
                      ++.++.++.++.++.+.|.+.+.+.+||+  +++|+++|+++.++++..+.....         .....++.++|...  
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--   78 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPP--   78 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEE--CCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCC--
Confidence            38899999999999999999999999999  778999999999998765432211         01244689999875  


Q ss_pred             eEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.++++++++.++++.|..++.+.+||+++ |+++|+|+..|+++
T Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          79 VVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             CeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            999999999999999999999999999995 99999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.70  E-value=8.2e-16  Score=107.51  Aligned_cols=109  Identities=25%  Similarity=0.434  Sum_probs=94.5

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..+.+++++.++.+.|.+.+.+.+||+  +++|+++|+++.+|++..+.. .......++.++|...  +.++.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~~-~~~~~~~~~~~~~~~~--~~~v~~~~~l   77 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVV--DRDGGVVGIITLPDLLRALEA-DEAGEPSAVDEVATPP--LLTVHPDEPL   77 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEE--cCCCCEEEEEEHHHHHHHHhc-ccccccccHHHhccCC--ceEECCCCCH
Confidence            7789999999999999999999999999  888999999999998765442 2222344588898874  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+.+||+++   |+++|+||.+|+++
T Consensus        78 ~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          78 AHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            99999999999999999985   59999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=7.2e-16  Score=106.98  Aligned_cols=107  Identities=22%  Similarity=0.394  Sum_probs=94.6

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +.++.++.++.++++.|.+.+...+||+  +++|+++|+|+..++++.+...   ....++.++|...  +.++++++++
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~---~~~~~v~~~~~~~--~~~i~~~~~~   75 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVV--DGDGHLVGLLTRDDLIRALAEG---GPDAPVRGVMRRD--FPTVSPSATL   75 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEE--CCCCcEEEEeeHHHHHHHHHhc---CCCCcHHHHhcCC--CcEECCCCcH
Confidence            7889999999999999988889999999  7789999999999987655432   1345789999774  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++..++||+++ |+++|++|+.|+.+
T Consensus        76 ~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          76 DAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.69  E-value=2e-16  Score=133.81  Aligned_cols=137  Identities=14%  Similarity=0.292  Sum_probs=116.0

Q ss_pred             ccccccc--cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           44 ARMEEHG--FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        44 ~~~~~~~--~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ..+..+.  |.+.+|+|+|.|..+     +++++.++++.++.+.+.+++++++||++ ++.++++|+|+.+|++..+. 
T Consensus       179 ~~~i~~vl~l~~~~v~diMtpr~~-----v~~l~~~~~~~e~~~~~~~~~~sR~PV~~-~~~d~ivGiv~~kDll~~~~-  251 (408)
T TIGR03520       179 QKILQGIVSFGNTDTKQVMRPRLD-----IFALDIETSFSEIIPKIIENGYSRIPVYK-ETIDNITGVLYIKDLLPHLN-  251 (408)
T ss_pred             HHHHHHHhccCCCEeeeeCCchHh-----EEEEECCCCHHHHHHHHHhCCCCEEEEEc-CCCCceEEEEEHHHHHhHhc-
Confidence            3444443  689999999998544     89999999999999999999999999994 33478999999999876421 


Q ss_pred             cCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHH
Q 028667          122 QGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREEL  194 (205)
Q Consensus       122 ~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~  194 (205)
                      .    ...++.++|++   +.++++++++.++++.|.+++.+.++|+|+ |.++|+||.+|+++.+.+...++.
T Consensus       252 ~----~~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~  318 (408)
T TIGR03520       252 K----KNFDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEF  318 (408)
T ss_pred             c----CCCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcC
Confidence            1    23457889887   889999999999999999999999999998 999999999999999987765443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.69  E-value=4.8e-16  Score=108.52  Aligned_cols=109  Identities=23%  Similarity=0.338  Sum_probs=92.7

Q ss_pred             ceEeCCCchHHHHHHHHHhcC-CCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~-~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      +.++++++++.++.+.|.+++ .+.+||+  |++|+++|+|+.+|++......   ....++.++|.+..+++++.++++
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~~~---~~~~~v~~~~~~~~~~~~v~~~~~   77 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVV--DNEGRYVGIISLADLRAIPTSQ---WAQTTVIQVMTPAAKLVTVLSEES   77 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEE--cCCCcEEEEEEHHHHHHHHHhh---ccccchhhhhcccccceEECCCCc
Confidence            788999999999999997664 8899999  7889999999999987654321   124578899975323678999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.+|++.|.+++.+++||+++ |+++|+|+.+|+++
T Consensus        78 l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          78 LAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            999999999999999999997 89999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=1.2e-15  Score=105.91  Aligned_cols=108  Identities=23%  Similarity=0.422  Sum_probs=94.0

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..++++.++.++++.|.+.+.+.+||+  +++|+++|+++.++++.... .. .....++.++|.+.  +.++.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~-~~~~~~v~~~~~~~--~~~v~~~~~l   76 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVK--DNEEKLKGVVTFTDILDLDL-FE-SFLEKKVFNIVSQD--VFYVNEEDTI   76 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEE--cCCCCEEEEEehHHhHHHHh-hc-ccccCcHHHHhcCC--cEEEcCCCcH
Confidence            7889999999999999999999999999  78899999999999875432 11 11245788899874  8899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+.+||+++|+++|+||..|++.
T Consensus        77 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~  110 (111)
T cd04626          77 DEALDIMREKQIGRLPVVDDNKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence            9999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=1.2e-15  Score=106.24  Aligned_cols=109  Identities=30%  Similarity=0.443  Sum_probs=94.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..+.+++++.++++.|.+.+.+.+||+  |++++++|+++..++++.+... ......++.++|.+.  +.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~~~~--~~~v~~~~~l   77 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVV--DDKKRLVGIITRYDVLSYALES-EELKDAKVREVMNSP--VITIDANDSI   77 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEE--cCCCCEEEEEEHHHHHHhhhhh-hhhcCCcHHHhccCC--ceEECCCCcH
Confidence            6789999999999999999999999999  7889999999999987644332 223456789999874  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+.+||+++ |+++|+++..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          78 AKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999987 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=1.1e-15  Score=109.74  Aligned_cols=111  Identities=32%  Similarity=0.547  Sum_probs=94.8

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC-------------------cCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK-------------------STK  130 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~-------------------~~~  130 (205)
                      ++.++.++.++.++.+.|.+.+.+.+||+  |++|+++|+++..++++.+........                   ..+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVV--DNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceE--CCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            37889999999999999998889999999  788999999999998765543221110                   127


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      +.++|.+.  +..+++++++.++++.|.+.+.+.+||+++|+++|++|..|+++
T Consensus        80 v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~  131 (132)
T cd04636          80 VEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR  131 (132)
T ss_pred             HHHhccCC--ceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence            88888774  89999999999999999999999999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.68  E-value=9.9e-16  Score=105.99  Aligned_cols=104  Identities=34%  Similarity=0.470  Sum_probs=93.3

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      ++.++++++++.++.+.|.+.+.+.+||+  +++|+++|+++..+++..       ....++.++|...  +.+++++++
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~~--~~~v~~~~~   71 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVV--DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTKN--PITVNPKTS   71 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEE--CCCCeEEEEecHHHHhcc-------cccccHHHHhcCC--CeEECCCCC
Confidence            38899999999999999999888999999  889999999999997642       2345799999874  899999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.++++.|..++...+||+++ |+++|+++..|+++
T Consensus        72 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          72 VASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            999999999999999999986 89999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.68  E-value=5.3e-16  Score=132.92  Aligned_cols=121  Identities=27%  Similarity=0.417  Sum_probs=107.8

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      ++..++.++|.++       ++++++++++.++++.|.+++.+.+||+  |++++++|+|+.+|+..       .....+
T Consensus        86 l~~VKv~~iMi~~-------pvtv~~d~tv~eA~~~m~~~~~s~l~VV--D~~gklvGIVT~rDL~~-------~~~~~~  149 (479)
T PRK07807         86 VAWVKSRDLVFDT-------PVTLSPDDTVGDALALLPKRAHGAVVVV--DEEGRPVGVVTEADCAG-------VDRFTQ  149 (479)
T ss_pred             HhhcccccccccC-------CeEECCCCCHHHHHHHHHhcCCceEEEE--CCCCeEEEEEeHHHHhc-------CccCCC
Confidence            4678888999876       9999999999999999999999999999  88999999999999642       113457


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +.++|++.  ++++++++++.+|++.|.+++.+.+||+|+ |+++|+||++||++.....
T Consensus       150 V~diMt~~--~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        150 VRDVMSTD--LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             HHHhccCC--ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            99999985  999999999999999999999999999996 9999999999999976644

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=8.3e-16  Score=107.40  Aligned_cols=108  Identities=22%  Similarity=0.377  Sum_probs=91.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC----cCccccccccCCceEEEcC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK----STKVGDIMTEENKLITVSP  146 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~----~~~v~~im~~~~~~~~v~~  146 (205)
                      ++++++++++.++.+.|.+.+.+.+||+  |++|+++|+++.+++++.+........    ..++.++|.+.  +.++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~   78 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGYSAIPVL--DKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTD--VPVIID   78 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCCceeeeE--CCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCC--CceecC
Confidence            8899999999999999999999999999  888999999999998765432211111    45788999875  899999


Q ss_pred             CCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          147 DTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       147 ~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      ++++.++++.|.+.+  .+||+++ |+++|+||..|+++
T Consensus        79 ~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          79 DADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            999999999998865  5899986 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.68  E-value=1.9e-15  Score=104.96  Aligned_cols=108  Identities=31%  Similarity=0.458  Sum_probs=94.3

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      ++.++++.++.++.+.|.+.+...++|+  ++ |+++|+++..+++.... .+......++.++|.+.  +..+++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~~--~~~v~~~~~l   76 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVR--DG-DPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATFP--LITVDPDDFL   76 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe--cC-CeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCCC--cEEECCCCcH
Confidence            7789999999999999998888999999  67 89999999999876443 22223456789999874  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+.+||+++|+++|+||..|+++
T Consensus        77 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~  110 (111)
T cd04589          77 FNALLLMTRHRIHRVVVREGGEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhhc
Confidence            9999999999999999999999999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=5.9e-16  Score=105.77  Aligned_cols=92  Identities=17%  Similarity=0.366  Sum_probs=82.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC-CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~-~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      ++++++++++.++.+.|.+++.+.+||+  ++ +|+++|+|+..|+.+.+.                    +.+++++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~~Givt~~Dl~~~~~--------------------~~~v~~~~~   60 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLW--DSRKQQFVGMLTITDFILILR--------------------LVSIHPERS   60 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEE--eCCCCEEEEEEEHHHHhhhee--------------------eEEeCCCCc
Confidence            7899999999999999999999999999  66 489999999999765210                    578999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~  184 (205)
                      +.+|++.|.+++.+++||+++  |+++|+||.+|++.
T Consensus        61 l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          61 LFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            999999999999999999984  69999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.68  E-value=9.3e-16  Score=106.67  Aligned_cols=109  Identities=28%  Similarity=0.501  Sum_probs=94.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      ++.+.++.++.++.+.|.+++.+.+||+  ++ ++++|+|+..+++..+...+......++.++|.+.  +.++++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~--~~~v~~~~~l   77 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREKRVSCVLVM--DG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPN--PVCATSDTPV   77 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCC--CeEEcCCCCH
Confidence            7889999999999999998888999999  66 99999999999876555433222226789999874  8899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+++||+++ |+++|+|+..|++.
T Consensus        78 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          78 LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            99999999999999999987 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.68  E-value=1.9e-15  Score=104.85  Aligned_cols=108  Identities=36%  Similarity=0.681  Sum_probs=94.3

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +.+++++.++.++.+.|.+.+.+.+||+  ++ ++++|+++..+++..+...+ .....++.++|...  ++.+++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~~~~--~~~v~~~~~l   76 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRVSSLLVV--DD-GRLVGIVTDRDLRNRVVAEG-LDPDTPVSEVMTAP--PITIPPDATV   76 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHhccC-CCccCCHHHHhCCC--CeEECCCCcH
Confidence            7889999999999999998888999999  66 99999999999876544332 22346788999774  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+++||+++|+++|+++.+|+++
T Consensus        77 ~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~  110 (111)
T cd04800          77 FEALLLMLERGIHHLPVVDDGRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence            9999999999999999999899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=2.4e-15  Score=104.47  Aligned_cols=109  Identities=36%  Similarity=0.676  Sum_probs=94.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..+.++.++.++.+.|.+.+.+.+||+  +++ +++|+++..++++.+..........++.++|.+.  +..+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~l   77 (112)
T cd04802           3 VITVDPDTTVYEAANIMTENNIGRLIVV--DNE-KPVGIITERDLVKKVVSRNLKPREVPVGEVMSTP--LITIDPNASL   77 (112)
T ss_pred             cEEECCCCCHHHHHHHHHHCCCCEEEEE--ECC-EEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCC--cEEECCCCCH
Confidence            7889999999999999998889999999  544 9999999999887655432222356789999874  8899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+.+||+++++++|+|+++|+++
T Consensus        78 ~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~  111 (112)
T cd04802          78 NEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence            9999999999999999999889999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.68  E-value=2e-15  Score=104.59  Aligned_cols=107  Identities=29%  Similarity=0.461  Sum_probs=94.0

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      +++.++++.++.++.+.|.+.+.+.+||+  ++ |+++|+++..++++.+ ..+  ....++.++|.+.  +.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~dl~~~~-~~~--~~~~~~~~~~~~~--~~~v~~~~~   74 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVV--EG-GRVVGIISRRDVEKAL-RHG--LGHAPVKDYMSTD--VVTVPPDTP   74 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEe--eC-CEEEEEEEHHHHHHHH-hcc--cccCcHHHHhcCC--CEEECCCCc
Confidence            37899999999999999998888999999  66 9999999999976643 222  2456889999874  899999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+++.+++||+++|+++|+||..|+++
T Consensus        75 l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~  109 (110)
T cd04595          75 LSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence            99999999999999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1.2e-15  Score=107.57  Aligned_cols=110  Identities=31%  Similarity=0.576  Sum_probs=95.1

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC--------CCcCccccccccCCceE
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS--------SKSTKVGDIMTEENKLI  142 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~--------~~~~~v~~im~~~~~~~  142 (205)
                      +.++.+++++.++.+.|.+.+.+.+||+  +++|+++|+++..++++.+......        ....++.++|...  +.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~   78 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVV--NEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTD--VL   78 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCcccccEE--CCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCC--Ce
Confidence            7889999999999999999999999999  7789999999999987654322111        1345788999774  89


Q ss_pred             EEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          143 TVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       143 ~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .+++++++.++++.|.+.+.+++||+++ |+++|+||..|+++
T Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          79 TVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            9999999999999999999999999998 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1.2e-15  Score=108.00  Aligned_cols=110  Identities=22%  Similarity=0.400  Sum_probs=89.7

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCC--c------CccccccccCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSK--S------TKVGDIMTEENK  140 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~--~------~~v~~im~~~~~  140 (205)
                      ++..+.+++++.++++.|.+.+...+||+  |++ |+++|+|+..|+++.+........  .      ....++|..  +
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   77 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVT--EEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS--D   77 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEE--eCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC--C
Confidence            47889999999999999998889999999  776 899999999998775433211100  0      112245655  4


Q ss_pred             eEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHH
Q 028667          141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVV  183 (205)
Q Consensus       141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil  183 (205)
                      +.++++++++.+|++.|.+++.+++||+++ |+++|+||.+|+-
T Consensus        78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          78 VISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            899999999999999999999999999987 8999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.68  E-value=4e-16  Score=111.11  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=94.6

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +.++.++.++.++++.|.+++.+.+||+  +++|+++|+++.+++++.+.... .....+++++|.+.  +.++++++++
T Consensus         4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~Gii~~~dl~~~~~~~~-~~~~~~v~~im~~~--~~~v~~~~~~   78 (124)
T cd04608           4 PVTVLPTVTCAEAIEILKEKGFDQLPVV--DESGKILGMVTLGNLLSSLSSGK-VQPSDPVSKALYKQ--FKRVNKNDTL   78 (124)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHHhc-cCCCCcHHHHhhcc--ceecCCCCCH
Confidence            7899999999999999999999999999  88899999999999887655433 23567999999985  9999999999


Q ss_pred             HHHHHHHHhC---------CCCEEEEeeC-CeEEEEEeHHHHHHHH
Q 028667          151 LRAMQLMTDN---------RIRHIPVIDD-KGMIGMVSIGDVVRAV  186 (205)
Q Consensus       151 ~~a~~~~~~~---------~~~~~pVv~~-~~~vGiIt~~dil~~l  186 (205)
                      .+++++|...         +...+||+++ |+++|+||..|+++++
T Consensus        79 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          79 GKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             HHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence            9999965432         4667788876 8999999999999763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1.6e-15  Score=105.40  Aligned_cols=109  Identities=39%  Similarity=0.713  Sum_probs=93.7

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +.++.++.++.++.+.|.+++.+.+||+  ++ |+++|+++..+++......+......++.++|...  +.++++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~   77 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVC--EN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRG--VVTVTEDDDV   77 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCC--ccEECCCCCH
Confidence            7889999999999999999899999999  66 99999999999874444333222233589999875  8899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|...+.+++||+++ |+++|+|+..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          78 DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.68  E-value=8.5e-16  Score=110.66  Aligned_cols=111  Identities=30%  Similarity=0.534  Sum_probs=95.3

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------------------CCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------------------SSKS  128 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---------------------~~~~  128 (205)
                      +++++.++.++.++.+.|.+++...+||+  +++++++|+++..++++.+.....                     ....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVV--DDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEE--CCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            37889999999999999999999999999  888999999999998764321100                     0124


Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      .++.++|.+.  +..+.+++++.++++.|.+.+.+.+||+++|+++|+||+.|+++
T Consensus        81 ~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADVMTRP--VVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHHhCCC--ceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence            5788999874  89999999999999999999999999999999999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2.7e-15  Score=104.21  Aligned_cols=108  Identities=40%  Similarity=0.613  Sum_probs=94.8

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..+.++.++.++.+.|.+.+.+.+||+  +++|+++|+++..++++.+...  .....++.++|.+.  ++.+.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~l~~~~~~~--~~~~~~v~~~~~~~--~~~v~~~~~~   76 (112)
T cd04624           3 VVTVDPDTSIREAAKLMAEENVGSVVVV--DPDERPIGIVTERDIVRAVAAG--IDLDTPVSEIMTRD--LVTVDPDEPV   76 (112)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEeeHHHHHHHHhcc--CCCccCHHHhccCC--CEEECCCCcH
Confidence            7889999999999999998899999999  7789999999999987755432  22356788999874  8899999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++...+||+++ |+++|+++++|+++
T Consensus        77 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          77 AEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            99999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.67  E-value=2.3e-15  Score=104.66  Aligned_cols=109  Identities=19%  Similarity=0.345  Sum_probs=95.1

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +++++++.++.++.+.|.+.+.+.+||+  +++|+++|+|+..++++.+. ........++.++|.+.  +.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~v~~~~~~~--~~~v~~~~~~   77 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDDIREILF-DPSLYDLVVASDIMTKP--PVVVYPEDSL   77 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCCcceeEE--CCCCCEEEEEEHHHHHHHHh-cccccccEEHHHhccCC--CcEEcCCCCH
Confidence            7899999999999999999899999999  77899999999999876443 32222236789999885  9999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~  184 (205)
                      .++++.|...+.+.+||+++  |+++|+++..|++.
T Consensus        78 ~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          78 EDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999999987  89999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.67  E-value=2.1e-15  Score=104.93  Aligned_cols=110  Identities=31%  Similarity=0.524  Sum_probs=95.0

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      ++++++++.++.++.+.|.+.+.+.+||+  +++|+++|+++..++++.+. ........++.++|.+.  +.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~~--~~~v~~~~~   77 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVV--DEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTRN--PKTIDPDAL   77 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEE--cCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhccC--CeEECCCCc
Confidence            37889999999999999988888999999  78899999999999776543 32222345799999885  889999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.++++.|..++.+++||+++ |+++|+|+..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          78 AAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999999985 99999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.67  E-value=2.9e-15  Score=103.72  Aligned_cols=106  Identities=29%  Similarity=0.477  Sum_probs=92.9

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      ++..+.++.++.++++.|.+++.+.+||+  +++|+++|+++.+++++.+...     ..++.++|.+.  +.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~-----~~~~~~~~~~~--~~~v~~~~~   73 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVV--DEDGRLVGIVTSWDISKAVARD-----KKSVEDIMTRN--VITATPDEP   73 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEE--CCCCcEEEEEeHHHHHHHHhhC-----ccCHHHhcCCC--CeEECCCCc
Confidence            38899999999999999999999999999  7889999999999987643321     23588888774  889999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+++...+||+++ |+++|+|++.|+++
T Consensus        74 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          74 IDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            999999999999999999986 89999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.67  E-value=2.4e-15  Score=103.44  Aligned_cols=102  Identities=24%  Similarity=0.317  Sum_probs=90.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +++++++.++.++++.|.+.+.+.+||+  +++|+++|+++..|+++.        ...++.++|.+.  +..+.+++++
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~--d~~g~~~Giv~~~dl~~~--------~~~~~~~~~~~~--~~~~~~~~~~   70 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRREAARA--------SGGCCGDHAEPF--KVTVSVDDDL   70 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEeHHHHHHh--------cccchhhhcccC--CEEECCCCCH
Confidence            7889999999999999998889999999  788999999999998753        123578888874  7889999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+.+||+++ |+++|+|+++++++
T Consensus        71 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          71 RIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999999987 89999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.67  E-value=2.3e-15  Score=104.40  Aligned_cols=106  Identities=19%  Similarity=0.367  Sum_probs=91.4

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      +.+++++.++.++.+.|.+.+.+.+||+  +++ |+++|+++..++++... ....  ..++.++|.+   +.+++++++
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~--~~~~~~~~G~v~~~~l~~~~~-~~~~--~~~~~~~~~~---~~~v~~~~~   74 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVY--DGDLDNIIGVVHVKDLLRALA-EGEE--DLDLRDLLRP---PLFVPESTP   74 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEE--CCCCceEEEEEEHHHHHHHHH-cCCC--cCCHHHHhcC---CeecCCCCc
Confidence            7889999999999999999889999999  777 99999999999877543 2211  1456777754   788999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+++.+++||+++ |+++|+||+.|+++
T Consensus        75 l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          75 LDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            999999999999999999987 99999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2.2e-15  Score=107.23  Aligned_cols=112  Identities=26%  Similarity=0.388  Sum_probs=90.7

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH-----HHHcCCCCCcCccccccccCCceEEE-
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK-----IIVQGRSSKSTKVGDIMTEENKLITV-  144 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~-----~~~~~~~~~~~~v~~im~~~~~~~~v-  144 (205)
                      +.++.+++++.++++.|.+.+.+.+||+  +++|+++|+++..|+...     +...+......+++++|.+....+.+ 
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~   80 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVV--DSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALD   80 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhcccc
Confidence            7889999999999999998889999999  788999999999997742     22211223456799999864111223 


Q ss_pred             ---cCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHH
Q 028667          145 ---SPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVR  184 (205)
Q Consensus       145 ---~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~  184 (205)
                         .+++++.++++.|.+++.+++||+++  |+++|+||++|+++
T Consensus        81 ~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          81 LEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence               26889999999999999999999986  59999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.67  E-value=2.7e-15  Score=103.58  Aligned_cols=104  Identities=25%  Similarity=0.454  Sum_probs=92.3

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..++++.++.++.+.|.+.+...+||+  +++|+++|+++..|++...      ....++.++|.+.  +.++++++++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~------~~~~~v~~~~~~~--~~~v~~~~~~   73 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLESLEQAY------KEAKSLEDIMLED--VFTVQPDASL   73 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCceEEEE--cCCCcEEEEEEHHHHHHHh------hcCCcHhHhhcCC--ceEECCCCcH
Confidence            7889999999999999999899999999  7789999999999986532      1235788899875  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++..++||+++ |+++|++|.+|+++
T Consensus        74 ~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          74 RDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            99999999999999999986 89999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=1.8e-15  Score=107.15  Aligned_cols=110  Identities=29%  Similarity=0.466  Sum_probs=93.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCC----------CCcCccccccccCC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRS----------SKSTKVGDIMTEEN  139 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~----------~~~~~v~~im~~~~  139 (205)
                      +.++.++.++.++++.|.+.+...+||+  +++ |+++|+|+..++++.+......          ....++.++|.+. 
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~--d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGFRRLPVV--DEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRN-   79 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCcccceeE--eCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCC-
Confidence            7889999999999999999999999999  676 9999999999987654321100          0134788898774 


Q ss_pred             ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                       ++++++++++.++++.|.+.+.+++||+++ |+++|+||..|+++
T Consensus        80 -~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          80 -VITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             -ceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence             999999999999999999999999999987 89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.66  E-value=4.2e-15  Score=102.92  Aligned_cols=107  Identities=36%  Similarity=0.597  Sum_probs=93.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..++++.++.++.+.|.+.+...+||+  ++ ++++|+++.+++++...... . ...+++++|.+.  +..+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~~l~~~~~~~~-~-~~~~v~~~~~~~--~~~~~~~~~l   75 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVV--DD-GRPLGIVTERDILRLLASGP-D-LQTPVGEVMSSP--LLTVPADTSL   75 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEeHHHHHHHHhcCC-C-CCcCHHHhcCCC--ceEECCCCCH
Confidence            7889999999999999998888999999  55 89999999999876543221 1 456789999874  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+.+.+++||+++ |+++|+|+.+|+++
T Consensus        76 ~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          76 YDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            99999999999999999987 99999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.66  E-value=3.9e-15  Score=102.17  Aligned_cols=101  Identities=33%  Similarity=0.574  Sum_probs=90.7

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..+.+++++.++++.|.+++.+.+||+  + +++++|+++.++++..       ....++.++|.+.  +.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d-~~~~~Giv~~~~l~~~-------~~~~~~~~~~~~~--~~~v~~~~~l   70 (105)
T cd04599           3 PITIDPLDSVGRAARLMEKHRIGGLPVV--E-DGKLVGIITSRDVRRA-------HPNRLVADAMTRE--VVTISPEASL   70 (105)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEehHHhhcc-------cccCCHHHHccCC--CEEECCCCCH
Confidence            7889999999999999988888999999  6 5899999999997652       1345688999875  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVV  183 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil  183 (205)
                      .++++.|.+++...+||+++|+++|+||..+++
T Consensus        71 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          71 LEAKRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             HHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence            999999999999999999999999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=3.1e-15  Score=105.37  Aligned_cols=110  Identities=33%  Similarity=0.514  Sum_probs=93.8

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------CCCcCccccccccCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------SSKSTKVGDIMTEENK  140 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---------~~~~~~v~~im~~~~~  140 (205)
                      ++.++.++.++.++.+.|.+.+.+.+||+  ++ |+++|+++..++++.+.....         .....++.++|...  
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   76 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVI--EG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRP--   76 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEE--EC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCC--
Confidence            37889999999999999998899999999  65 999999999998765432211         11245788889774  


Q ss_pred             eEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      +.++++++++.+++..|.+.+...+||+++|+++|+|+..|+++
T Consensus        77 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~  120 (121)
T cd04633          77 VITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR  120 (121)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence            89999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.5e-15  Score=106.34  Aligned_cols=110  Identities=25%  Similarity=0.399  Sum_probs=93.3

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC------------CCCCcCccccccccC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG------------RSSKSTKVGDIMTEE  138 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~------------~~~~~~~v~~im~~~  138 (205)
                      +..+.+++++.++.+.|.+.+.+.+||+  +++|+++|+++.++++..+....            ......++.++|...
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP   80 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEE--CCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence            7889999999999999999999999999  88899999999999876443210            011245688999774


Q ss_pred             CceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHH
Q 028667          139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVR  184 (205)
Q Consensus       139 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~  184 (205)
                        ++++++++++.++++.|.+.+...+||+++   |+++|+||++|+++
T Consensus        81 --~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          81 --VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             --CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence              899999999999999999999999999853   89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3e-15  Score=106.55  Aligned_cols=109  Identities=23%  Similarity=0.395  Sum_probs=89.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCc-------------Ccccccccc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS-------------TKVGDIMTE  137 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~-------------~~v~~im~~  137 (205)
                      ++++++++++.++++.|.+++.+.+||+  |++|+++|+++..|+++...... ....             ....+.|..
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~--d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVV--DEKGKLIGNISASDLKGLLLSPD-DLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEE--CCCCcEEEEEEHHHhhhhhcCcc-hhhcccchhhhhhhhhcccccccccC
Confidence            7899999999999999999999999999  78899999999999876442211 1111             012234545


Q ss_pred             CCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          138 ENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       138 ~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                        ++.++++++++.+|++.|.+++.+.+||+++ |+++|+||..|+++
T Consensus        80 --~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          80 --PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             --CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence              4899999999999999999999999999997 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.65  E-value=3.4e-15  Score=102.69  Aligned_cols=101  Identities=23%  Similarity=0.319  Sum_probs=89.6

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      -.++.+++++.++++.|.+.+...+||+  ++ |+++|+++..++++.        ...++.++|.+.  +.++++++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~--------~~~~~~~~~~~~--~~~v~~~~~l   69 (104)
T cd04594           3 DIKVKDYDKVYEAKRIMIENDLLSLPVV--DY-NKFLGAVYLKDIENA--------TYGDVVDYIVRG--IPYVRLTSTA   69 (104)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHHhhh--------cccchhhhhhcC--CcEEcCCCCH
Confidence            3578999999999999999999999999  66 999999999997652        123577888775  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+.+||+++|+++|+||.+|++.
T Consensus        70 ~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~~  103 (104)
T cd04594          70 EEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHHHHHHHcCcceEEEEECCEEEEEEEHHHhhc
Confidence            9999999999999999999999999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.4e-15  Score=102.31  Aligned_cols=93  Identities=33%  Similarity=0.473  Sum_probs=84.2

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      +++.+.++.++.++++.|.+.+.+.+||+  |++|+++|+++.+|++..        .          .  +.+++++++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~--------~----------~--~~~v~~~~~   59 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVL--DDDGKLSGIITERDLIAK--------S----------E--VVTATKRTT   59 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHhcC--------C----------C--cEEecCCCC
Confidence            37899999999999999998999999999  888999999999997641        0          1  678999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+++.+++||+++ |+++|+||++|+++
T Consensus        60 l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          60 VSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999999999999999997 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=5.9e-15  Score=103.06  Aligned_cols=108  Identities=31%  Similarity=0.556  Sum_probs=89.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcC-CCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCC--
Q 028667           71 WLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD--  147 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~-~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--  147 (205)
                      +..++++.++.++++.|...+ ...+||+  + +|+++|+++..|+++.+. ........++.++|...  +++++++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~~--~~~v~~~~~   76 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVV--E-KGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQP--VVTLQESEI   76 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEc--C-CCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCCC--cEEEecccc
Confidence            778999999999999998877 6677777  5 589999999999876433 22222346788999874  7888877  


Q ss_pred             CcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          148 TKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       148 ~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +++.++++.|.+++.+.+||+++ |+++|+||++|+++
T Consensus        77 ~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          77 QDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             cCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            68999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.64  E-value=5.2e-15  Score=103.40  Aligned_cols=104  Identities=18%  Similarity=0.315  Sum_probs=89.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcC-
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP-  146 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-  146 (205)
                      +.++.+++++.++.+.|.+++.+.+||+  |+   +|+++|+++..+++.. .     ....++.++|...  +..+.. 
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~~~~G~v~~~dl~~~-~-----~~~~~v~~~~~~~--~~~~~~~   73 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGFSGIPVT--EDGKSGGKLLGIVTSRDIDFL-T-----DSETPLSEVMTPR--EVLVVAP   73 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCCCceEEe--eCCCcCCEEEEEEEhHHhhhh-h-----ccCCCHHHhcCCC--ceEEECC
Confidence            7889999999999999998888999999  65   7899999999997532 1     1235688999875  566655 


Q ss_pred             -CCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          147 -DTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       147 -~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                       ++++.++++.|.+++.+.+||+++ |+++|+||++|+++
T Consensus        74 ~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          74 TGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence             999999999999999999999986 99999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.64  E-value=3.5e-15  Score=103.40  Aligned_cols=101  Identities=27%  Similarity=0.469  Sum_probs=88.0

Q ss_pred             eCCCchHHHHHHHHHhcC-----CCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCC
Q 028667           74 CTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (205)
Q Consensus        74 v~~~~~l~~a~~~~~~~~-----~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  148 (205)
                      +.+++++.++++.|.+++     ...+||+  +++|+++|+++.+++++.       ....++.++|.+.  +..+.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~~--~~~i~~~~   70 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVSLRDLLLA-------DPDTPVSDIMDTD--VISVSADD   70 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEE--CCCCCEEEEEEHHHHhcC-------CCcchHHHHhCCC--CeEEcCCC
Confidence            578899999999998766     4689999  788999999999997641       1345788999874  89999999


Q ss_pred             cHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHH
Q 028667          149 KVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRA  185 (205)
Q Consensus       149 ~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~  185 (205)
                      ++.++++.|.+.+.+++||+++ |+++|+|+..|+++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          71 DQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             CHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9999999999999999999986 899999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.64  E-value=8.2e-15  Score=102.98  Aligned_cols=109  Identities=34%  Similarity=0.528  Sum_probs=93.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC---------CCcCccccccccCCce
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---------SKSTKVGDIMTEENKL  141 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~---------~~~~~v~~im~~~~~~  141 (205)
                      +.++.++.++.++.+.|.+.+...+||+  ++ |+++|+++..+++.........         ....++.++|.+.  +
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   77 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSIRRLPVV--DR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRD--P   77 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCcceeeEe--cC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCC--C
Confidence            7889999999999999999999999999  66 9999999999987654321110         0135688899874  8


Q ss_pred             EEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       142 ~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++++++.+++..|.+.+.+.+||+++ |+++|+||..|+++
T Consensus        78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          78 ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999999997 99999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.64  E-value=1.1e-14  Score=100.76  Aligned_cols=106  Identities=26%  Similarity=0.477  Sum_probs=92.4

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..++++.++.++.+.|.+.+.+.+||+  ++ |+++|+++..++++.. ..+  ....++.++|...  +.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~~l~~~~-~~~--~~~~~v~~~~~~~--~~~v~~~~~~   74 (110)
T cd04588           3 LITLNPNATLREAARLFNTHHIHGAPVV--DD-GKLVGIVTLSDIAHAI-ARG--LELAKVKDVMTKD--VITIDEDEQL   74 (110)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEHHHHHHHH-hcc--ccccCHHHHhcCC--ceEECCCCCH
Confidence            7889999999999999999899999999  67 8999999999987643 222  1235788888764  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+.+.+.+||+++ |+++|+|++.|+++
T Consensus        75 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          75 YDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            99999999999999999987 99999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=5.4e-15  Score=104.24  Aligned_cols=110  Identities=31%  Similarity=0.498  Sum_probs=93.7

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC---CC-----CCcCccccccccCCceE
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG---RS-----SKSTKVGDIMTEENKLI  142 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~---~~-----~~~~~v~~im~~~~~~~  142 (205)
                      +..++++.++.++.+.|.+.+.+.+||+  |++|+++|+++..++++......   ..     ....++.++|...  +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   78 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGFTGLPVV--QKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTP--VY   78 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCC--Ce
Confidence            7889999999999999998899999999  88899999999999876421110   00     1345688888774  89


Q ss_pred             EEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          143 TVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       143 ~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .+++++++.++++.|.+++.+.+||+++ |+++|++|..|+++
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          79 SVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             eECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            9999999999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.63  E-value=5.3e-15  Score=127.47  Aligned_cols=122  Identities=25%  Similarity=0.299  Sum_probs=102.9

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      .+|+++|.....    +++++++++++.++++.|.+++.+.+||+  |+   +++++|+||.+|+...     ....+.+
T Consensus        94 ~kVk~~~~g~i~----~~~tV~pd~tl~eAl~~m~~~~~~~vpVV--D~~~~~gkLvGIVT~~DLr~~-----~~~~~~~  162 (502)
T PRK07107         94 RRVKNYKAGFVV----SDSNLTPDNTLADVLDLKEKTGHSTVAVT--EDGTAHGKLLGIVTSRDYRIS-----RMSLDTK  162 (502)
T ss_pred             HHHHHHhcCCcC----CCCEeCCCCcHHHHHHHHHhcCCCeEEEE--eCCCcCCEEEEEEEcHHhhcc-----ccCCCCC
Confidence            357888863211    16799999999999999999999999999  54   6899999999997431     1234678


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHH
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAV  186 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l  186 (205)
                      ++++|++.++++++++++++.+|+++|.++++..+||+|+ |+++|+||++|+++..
T Consensus       163 V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            9999996435899999999999999999999999999996 8999999999999864

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.63  E-value=9.2e-15  Score=100.99  Aligned_cols=98  Identities=20%  Similarity=0.318  Sum_probs=87.4

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD  147 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~  147 (205)
                      ...++++.++.++.+.+.+.+...+||+  ++   +|+++|+|+.+++......            +|.+.  +.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~~~G~v~~~dl~~~~~~------------~m~~~--~~~v~~~   67 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVV--DSTEESPRLVGYILRSQLVVALKN------------YIDPS--PFTVSPR   67 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceE--cCCCCCCEEEEEEeHHHHHHHHHH------------hccCC--CceECCC
Confidence            6789999999999999999888899999  66   6999999999997654211            77764  8899999


Q ss_pred             CcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          148 TKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       148 ~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      +++.++++.|.+++.+++||+++|+++|+|+++|+++
T Consensus        68 ~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~~  104 (105)
T cd04591          68 TSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLK  104 (105)
T ss_pred             CcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhhc
Confidence            9999999999999999999998899999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.62  E-value=7e-15  Score=101.63  Aligned_cols=104  Identities=26%  Similarity=0.478  Sum_probs=90.3

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcC-CCc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP-DTK  149 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~  149 (205)
                      +..+.++.++.++.+.|.+++.+.+||+  +++|+++|+++.++++..      .....++.++|...  +..+.. +++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~------~~~~~~v~~~~~~~--~~~~~~~~~~   73 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVV--DDDGKLVGIVTNRDLRFE------TDLDKPVSEVMTPE--NLLTTVEGTS   73 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCEEEEEEEhhHeeec------ccCCCCHHHhcccC--ceEEecCCCC
Confidence            7889999999999999998899999999  788999999999997532      12346789999764  566666 999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+.+.+.+||+++ |+++|+|+.+|+++
T Consensus        74 l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          74 LEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            999999999999999999986 99999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>PRK11573 hypothetical protein; Provisional

Probab=99.62  E-value=6.1e-15  Score=124.86  Aligned_cols=135  Identities=15%  Similarity=0.278  Sum_probs=115.3

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      |++.+|+++|.|..+     +.+++.+.++.++.+.+.+++++++||++ ++.++++|+|..+|++..... +.......
T Consensus       184 l~~~~v~eiMtPr~~-----i~~l~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IiGiv~~kDll~~~~~-~~~~~~~~  256 (413)
T PRK11573        184 LEKVTVDDIMVPRNE-----IVGIDINDDWKSILRQLTHSPHGRIVLYR-DSLDDAISMLRVREAYRLMTE-KKEFTKEN  256 (413)
T ss_pred             cCCCChhhcCCccce-----EEEEECCCCHHHHHHHHHhCCCceEEEEc-CCCCceEEEEEHHHHHHHhhc-cCcCCHHH
Confidence            789999999999876     99999999999999999999999999995 455889999999998864332 11112234


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHH
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELN  195 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~  195 (205)
                      +.+++++   +..++++.++.++++.|++++.+...|+|+ |...|+||.+|+++.+.+...++++
T Consensus       257 l~~~~r~---~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d  319 (413)
T PRK11573        257 MLRAADE---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMS  319 (413)
T ss_pred             HHhhccC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccC
Confidence            5567766   899999999999999999999999999999 9999999999999999988766543

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=2.6e-14  Score=98.37  Aligned_cols=103  Identities=35%  Similarity=0.585  Sum_probs=90.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      ..+++++.++.++.+.|.+.+.+.+||+  +++++++|+++.++++..       ....++.++|...  +.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~v~~~~l~~~-------~~~~~~~~~~~~~--~~~v~~~~~l   71 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVV--KKSGELVGIITRKDLLRN-------PEEEQLALLMTRD--PPTVSPDDDV   71 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhc-------cccchHHHHhcCC--CceECCCCCH
Confidence            7889999999999999998888999999  777999999999997641       1234678888774  8889999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      .+++..|..++..++||+++|+++|+|+..|+++
T Consensus        72 ~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~~  105 (106)
T cd04638          72 KEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence            9999999999999999999899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.61  E-value=1.8e-14  Score=99.15  Aligned_cols=102  Identities=28%  Similarity=0.561  Sum_probs=90.3

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      ++++..+.++.++++.|.+.+...+||+  ++ ++++|+++..+++..       ....++.++|.+.  +..+.+++++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~-~~~~g~v~~~~l~~~-------~~~~~~~~~~~~~--~~~v~~~~~l   71 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGHDGFPVV--DN-GKVVGIVSARDLLGK-------DPDETVEEIMSKD--LVVAVPEMDI   71 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhcc-------CccccHHHhCCCC--CeEECCCCCH
Confidence            7889999999999999988888889999  66 999999999997641       2345789999875  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++...+||+++ |+++|+|+..++++
T Consensus        72 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          72 MDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999987 89999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.61  E-value=2.2e-14  Score=99.27  Aligned_cols=107  Identities=32%  Similarity=0.475  Sum_probs=91.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      ++.++++.++.++.+.|.+.+.+.+||+  ++ ++++|+++..|+++... ... ....++.++|.+.  +.++.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~-~~~-~~~~~~~~~~~~~--~~~v~~~~~~   75 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGERHRGYPVV--DD-GRLVGIVTLADIRRVPA-EGR-EATVLVGDVMTRD--PVTASPDETL   75 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcceEe--eC-CeEEEEEEHHHHHHHHh-cCc-ccccCHHHhccCC--CeEECCCCCH
Confidence            7899999999999999998888999999  66 99999999999876432 211 1123677888774  9999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+++.+++||+++ |+++|+|+..|+++
T Consensus        76 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          76 RDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            99999999999999999987 99999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.61  E-value=2.1e-14  Score=101.04  Aligned_cols=110  Identities=31%  Similarity=0.449  Sum_probs=94.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC--------CCCcCccccccccCCceE
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--------SSKSTKVGDIMTEENKLI  142 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~--------~~~~~~v~~im~~~~~~~  142 (205)
                      +..++++.++.+|.+.|.+.+.+.+||+  |++|+++|+++..++++.......        .....++.++|.+.  ++
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~   78 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKIRHLPVV--DEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKD--VI   78 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCC--Ce
Confidence            7889999999999999998889999999  788999999999998754321100        12345788999874  89


Q ss_pred             EEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          143 TVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       143 ~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      ++++++++.++++.|.+++...+||+++|+++|+++..|+++
T Consensus        79 ~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~  120 (121)
T cd04584          79 TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR  120 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence            999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.61  E-value=1.9e-14  Score=123.76  Aligned_cols=122  Identities=20%  Similarity=0.304  Sum_probs=104.0

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      ++..+++++|.++       +.++.+++++.++++.|.+++.+.+||+  |++++++|+|+.+|+++.+.... .....+
T Consensus       332 l~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~-~~~~~~  401 (454)
T TIGR01137       332 LKNATVKDLHLPA-------PVTVHPTETVGDAIEILREYGFDQLPVV--TEAGKVLGSVTLRELLSALFAGK-ANPDDA  401 (454)
T ss_pred             hccCCHHHhCcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHhccC-CCcCCC
Confidence            6788999999886       8999999999999999999899999999  78899999999999877554322 223457


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHH
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV  186 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l  186 (205)
                      +.++|.+.  +.++++++++.++++.|.+++  ..+|+++|+++|+||++|+++.+
T Consensus       402 v~~im~~~--~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       402 VSKVMSKK--FIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             HHHhcCCC--CeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHHHhh
Confidence            99999874  889999999999999998864  35566679999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.60  E-value=2.2e-14  Score=123.89  Aligned_cols=110  Identities=17%  Similarity=0.305  Sum_probs=98.0

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD  147 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~  147 (205)
                      ++++++++++.++.+.|.+++++.+||+  |+   +++++|+|+.+|+...      .....++.++|++.+++++++++
T Consensus       110 pvtV~pd~tV~dA~~lm~~~~~~~lpVv--D~~~~~GklvGIVT~~DL~~v------~~~~~~V~eIMt~~~~lvtv~~~  181 (505)
T PLN02274        110 PVVKSPSSTISSLDELKASRGFSSVCVT--ETGTMGSKLLGYVTKRDWDFV------NDRETKLSEVMTSDDDLVTAPAG  181 (505)
T ss_pred             CeeeCCCCcHHHHHHHHHhcCCceEEEE--eCCCcCCeEEEEEEHHHHhhc------cccCCcHHHHhccCCCcEEECCC
Confidence            8999999999999999999999999999  55   4899999999997532      13467899999975347899999


Q ss_pred             CcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          148 TKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       148 ~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +++.+|++.|.+++...+||+|+ ++++|+||++|+++.+..
T Consensus       182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            99999999999999999999986 999999999999999875

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.59  E-value=1.9e-14  Score=123.37  Aligned_cols=120  Identities=25%  Similarity=0.372  Sum_probs=104.4

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      +...++.++|.++       ++++.+++++.++++.|.+++.+.+||+  | +++++|+|+.+|+..       .....+
T Consensus        85 v~~VKv~eim~~~-------pvtv~p~~tI~eA~~lm~~~~~~~~vVv--D-~gklvGIVT~rDL~~-------~~~~~~  147 (475)
T TIGR01303        85 VAFVKSRDLVLDT-------PITLAPHDTVSDAMALIHKRAHGAAVVI--L-EDRPVGLVTDSDLLG-------VDRFTQ  147 (475)
T ss_pred             HhhcchhhccccC-------CeEECCCCCHHHHHHHHHhcCCeEEEEE--E-CCEEEEEEEHHHhhc-------CCCCCC
Confidence            3567888888876       8999999999999999999999999998  5 468999999999642       123467


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +.++|++.  ++++++++++.+|+++|.+++.+++||+|+ |+++|+||.+|+++.....
T Consensus       148 V~dIMt~~--litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       148 VRDIMSTD--LVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             HHHHccCC--ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            99999985  999999999999999999999999999995 9999999999999976644

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.59  E-value=3.6e-14  Score=97.95  Aligned_cols=107  Identities=29%  Similarity=0.414  Sum_probs=89.3

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      ++.++.+++++.++.+.|.+++.+.+||+  ++ ++++|+++..++++.+.... .....++.++|.+.  +..++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~~--~~~v~~~~~   75 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVV--DD-GRVVGSIDESDLLDALIEGK-AKFSLPVREVMGEP--LPTVDPDAP   75 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEe--eC-CeeEEEEeHHHHHHHHhccc-cccCcCHHHHhcCC--CceeCCCCc
Confidence            47889999999999999999999999999  66 99999999999877544322 22245788999774  889999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.++++.|.+ .. .+||+++ |+++|+||.+|+++
T Consensus        76 l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          76 IEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence            9999999988 33 4678876 99999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=4e-14  Score=99.85  Aligned_cols=109  Identities=31%  Similarity=0.524  Sum_probs=92.5

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC-C--------CCcCccccccccCCce
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-S--------SKSTKVGDIMTEENKL  141 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~-~--------~~~~~v~~im~~~~~~  141 (205)
                      ++.++++.++.++.+.|.+.+.+.+||+  ++ |+++|+++.+++++.+..... .        ....++.++|...  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   77 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKHKFHHLLVV--ED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRD--P   77 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhCCCCEEEEE--eC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCC--C
Confidence            7889999999999999999899999999  65 899999999998765431100 0        0134688888874  9


Q ss_pred             EEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       142 ~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +.+++++++.++++.|.+++...+||+++ |+++|++++.|+++
T Consensus        78 ~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          78 ITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             eeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            99999999999999999999999999987 89999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=7.8e-14  Score=101.58  Aligned_cols=110  Identities=31%  Similarity=0.623  Sum_probs=93.3

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC--C----------------------
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--S----------------------  125 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~--~----------------------  125 (205)
                      +++++++++++.++.+.|.+.+.+.+||+  ++ |+++|+++.+++++.+.....  .                      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVL--DG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEe--EC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            37899999999999999999999999999  66 899999999998765432210  0                      


Q ss_pred             -------CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          126 -------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       126 -------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                             ....++.++|...  +.++++++++.+++..|.+.+..++||+++|+++|+|+..|++.
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~  142 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKK--VITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence                   0234677888774  89999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.58  E-value=3.5e-14  Score=113.99  Aligned_cols=114  Identities=23%  Similarity=0.436  Sum_probs=98.6

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~  132 (205)
                      -.+|+++|.++      +++.+.+++++.++++.|.+.+.+.+||+  |++|+++|+|+..|+++.+. .+ .....++.
T Consensus       154 ~~~v~~im~~~------~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv--d~~g~~~Givt~~dl~~~~~-~~-~~~~~~v~  223 (268)
T TIGR00393       154 LVKVKDLMQTT------DLPLIAPTTSFKDALLEMSEKRLGSAIVC--DENNQLVGVFTDGDLRRALL-GG-GSLKSEVR  223 (268)
T ss_pred             hhhHHHHhCCC------CCCcCCCCCcHHHHHHHHhhcCCcEEEEE--eCCCCEEEEEEcHHHHHHHh-cC-CcccCcHH
Confidence            47899999874      16789999999999999998899999999  78899999999999876433 22 22456799


Q ss_pred             cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEe
Q 028667          133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVS  178 (205)
Q Consensus       133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt  178 (205)
                      ++|.+.  ++++++++++.+|++.|.+++..++||+++ |+++|+|+
T Consensus       224 ~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       224 DFMTLG--PKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             HhCCCC--CeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            999884  889999999999999999999999999987 89999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.57  E-value=2.5e-14  Score=122.53  Aligned_cols=117  Identities=25%  Similarity=0.449  Sum_probs=101.1

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC---CceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~---~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ++++.|.++       +++++++.++.++.+.|.+++++.+||+  +++   ++++|+|+.+|++..      .....++
T Consensus        81 ~~~~~~~~~-------~vtl~~~~tv~eal~~m~~~~~s~lpVv--d~~~~~~~lvGIVt~rDL~~~------~~~~~~V  145 (450)
T TIGR01302        81 RAENGIISD-------PVTISPETTVADVLELMERKGISGIPVV--EDGDMTGKLVGIITKRDIRFV------KDKGKPV  145 (450)
T ss_pred             cccCceecC-------ceEeCCCCCHHHHHHHHHHcCCCEEEEE--eCCCCCCeEEEEEEHHHHhhh------hcCCCCH
Confidence            445556554       8999999999999999999999999999  666   799999999997642      1235689


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      .++|++. +++++++++++.++++.|.+++.+.+||+|+ |+++|+||++|+++.+.
T Consensus       146 ~dvm~~~-~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       146 SEVMTRE-EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             HHhhCCC-CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            9999831 3999999999999999999999999999997 99999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=1.4e-13  Score=94.57  Aligned_cols=109  Identities=39%  Similarity=0.671  Sum_probs=93.1

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      +..+.++.++.++.+.|.+.+...+||+  +++++++|+++.++++........ .....+.++|...  +..+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~   77 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVV--DDDGRLVGIVTERDLLRALAEGGL-DPLVTVGDVMTRD--VVTVSPDTSL   77 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEE--CCCCCEEEEEeHHHHHHHHHhccC-CccccHHHHhcCC--ceecCCCcCH
Confidence            7889999999999999999889999999  788999999999998876543221 1112266788774  8999999999


Q ss_pred             HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++++.|.+.+.+++||+++ |+++|+++..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          78 EEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999988 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.56  E-value=6e-14  Score=121.29  Aligned_cols=117  Identities=29%  Similarity=0.459  Sum_probs=102.8

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccc
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~i  134 (205)
                      .++++|..+       +.+++++.++.++.+.|.+++++.+||+  +++++++|+|+.+|+...      .....++.++
T Consensus        88 ~~~dim~~~-------~v~i~~~~tv~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~DL~~~------~~~~~~V~di  152 (486)
T PRK05567         88 RSESGVVTD-------PVTVTPDTTLAEALALMARYGISGVPVV--DENGKLVGIITNRDVRFE------TDLSQPVSEV  152 (486)
T ss_pred             hhhhcccCC-------CeEeCCCCCHHHHHHHHHHhCCCEEEEE--ccCCEEEEEEEHHHhhhc------ccCCCcHHHH
Confidence            467777765       9999999999999999999999999999  889999999999997532      1235679999


Q ss_pred             cccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       135 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      |.+. +++++++++++.++++.|.+++.+.+||+++ |+++|+||.+|+++.+.
T Consensus       153 m~~~-~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        153 MTKE-RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             cCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence            9822 4899999999999999999999999999997 99999999999998864

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.55  E-value=6.6e-14  Score=119.38  Aligned_cols=142  Identities=17%  Similarity=0.327  Sum_probs=118.9

Q ss_pred             cccccccc--cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           43 SARMEEHG--FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        43 ~~~~~~~~--~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ...+.++.  |.+.+|+++|.|..+     +.+++.+.++.++.+.+.+++++++||++ ++.+.++|++..+|++....
T Consensus       193 E~~mi~~v~~l~~~~v~eiMtPR~~-----i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~  266 (429)
T COG1253         193 EREMINNVLDLDDRTVREIMTPRTD-----IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALL  266 (429)
T ss_pred             HHHHHHHHhccCCcEeeeEeeeccc-----EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHh
Confidence            33454443  689999999999765     89999999999999999999999999995 57889999999999998765


Q ss_pred             HcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHH
Q 028667          121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNR  196 (205)
Q Consensus       121 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~  196 (205)
                      ....   .......+.+   ++.+++.+++.++++.|++++.+...|+|+ |.+.|+||.+||++.+.+...++++.
T Consensus       267 ~~~~---~~~~~~~~~~---~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~  337 (429)
T COG1253         267 DGQS---DLDLRVLVRP---PLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDE  337 (429)
T ss_pred             cCcc---ccchhhcccC---CeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccc
Confidence            4321   1222233334   899999999999999999999999999999 99999999999999999988766543

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.55  E-value=8.6e-14  Score=97.64  Aligned_cols=109  Identities=18%  Similarity=0.278  Sum_probs=88.6

Q ss_pred             ceEeCCCchHHHHHHHHHhcC-CCeEEEEecCCCCceEEEEehHHHHHHHHHc--CCCCCcCccccccccCCceEEEcCC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQ--GRSSKSTKVGDIMTEENKLITVSPD  147 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~-~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~--~~~~~~~~v~~im~~~~~~~~v~~~  147 (205)
                      ++++++++++.++.+.|...+ .+.+||+  ++ |+++|+++.++++..+...  .......++.++|.+.  +..++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~   77 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDLSALAVV--DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPD--PLIVEAD   77 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCccEEEEE--EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCC--cEEecCC
Confidence            778999999999999998876 8899999  77 9999999999987543211  0011345799999874  9999999


Q ss_pred             CcHHHHHHHHHhCCCC---EEEEeeC-CeEEEEEeHHHHHH
Q 028667          148 TKVLRAMQLMTDNRIR---HIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       148 ~~l~~a~~~~~~~~~~---~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      +++.++++.|.+++..   ..||+++ |+++|+|+..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          78 TPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999999998753   3456665 99999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.54  E-value=5.8e-14  Score=121.19  Aligned_cols=109  Identities=21%  Similarity=0.335  Sum_probs=96.1

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD  147 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~  147 (205)
                      ++++++++++.++.++|.+.+++.+||+  ++   +++++|+|+.+|+...      .....++.++|++.+++++++++
T Consensus       106 pvtv~pd~tv~eA~~lm~~~~~s~vpVv--d~~~~~gkLvGIVt~~DL~~~------~~~~~~V~diMt~~~~lvtv~~~  177 (495)
T PTZ00314        106 PYVLSPNHTVADVLEIKEKKGFSSILIT--VDGKVGGKLLGIVTSRDIDFV------KDKSTPVSEVMTPREKLVVGNTP  177 (495)
T ss_pred             CeecCCCCCHHHHHHHHHHcCCcEEEEE--eCCccCCeEEEEEEHHHHhhc------ccCCCCHHHhhCCcCCceEeCCC
Confidence            8999999999999999999999999999  55   4899999999997521      22456899999873248999999


Q ss_pred             CcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          148 TKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       148 ~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      +++.+|+++|.+++...+||+|+ ++++|+||++|+++...
T Consensus       178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            99999999999999999999997 89999999999998754

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.51  E-value=7.6e-14  Score=106.62  Aligned_cols=168  Identities=17%  Similarity=0.291  Sum_probs=138.4

Q ss_pred             hcCCcchHHHHHHHhhcCCCCcccccccccccccccccccc--cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHH
Q 028667           10 SHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHG--FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM   87 (205)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~   87 (205)
                      +..|-..+++++.++.+....       ........|.+..  ..++.|+|+|.|..+     ..++..+.++.+.+..+
T Consensus        28 ~gEpknr~eLl~liRdse~n~-------LiD~dt~~mlEGvm~iadl~vrDiMIPRSQ-----M~~l~~~~~l~~~l~~i   95 (293)
T COG4535          28 HGEPKNREELLELIRDSEQNE-------LIDADTLDMLEGVMDIADLRVRDIMIPRSQ-----MITLKRNQTLDECLDVI   95 (293)
T ss_pred             cCCCcCHHHHHHHHHHhhhcc-------ccChhHHHHHHHHHHHHHhhHhhhcccHHH-----heeccccCCHHHHHHHH
Confidence            556777888888887655533       3334444455554  578999999999866     89999999999999999


Q ss_pred             HhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEE
Q 028667           88 TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPV  167 (205)
Q Consensus        88 ~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV  167 (205)
                      .+..++.+||+. ++...+.|++..+||++.+..+   .....+.++.+|   .+.++++..+...++-|+..+.+...|
T Consensus        96 iesaHSRfPVi~-edkD~v~GIL~AKDLL~~~~~~---~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIV  168 (293)
T COG4535          96 IESAHSRFPVIS-EDKDHVEGILLAKDLLPFMRSD---AEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIV  168 (293)
T ss_pred             HHhccccCCccc-CCchhhhhhhhHHHHHHHhcCC---cccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEE
Confidence            999999999996 5667899999999999874322   123568889888   789999999999999999999999999


Q ss_pred             eeC-CeEEEEEeHHHHHHHHHhhhhHHHHH
Q 028667          168 IDD-KGMIGMVSIGDVVRAVVSEHREELNR  196 (205)
Q Consensus       168 v~~-~~~vGiIt~~dil~~l~~~~~~~~~~  196 (205)
                      +|+ |-+-|.||..|+++.+.+...++++.
T Consensus       169 iDEfGgVsGLVTIEDiLEqIVGdIEDE~De  198 (293)
T COG4535         169 IDEFGGVSGLVTIEDILEQIVGDIEDEYDE  198 (293)
T ss_pred             EeccCCeeeeEEHHHHHHHHhcccccccch
Confidence            999 99999999999999999887765543

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.51  E-value=5.8e-13  Score=92.95  Aligned_cols=106  Identities=36%  Similarity=0.646  Sum_probs=92.3

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV  150 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  150 (205)
                      ++++.++.++.+|...|.+++...+||+  + .++++|++|.+|+++.+......  ..++.++|...  +.++.+++++
T Consensus         9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~--~-~~~l~Giit~~di~~~~~~~~~~--~~~v~~v~~~~--~~~~~~~~~~   81 (117)
T COG0517           9 VITVKPDTSVRDALLLMSENGVSAVPVV--D-DGKLVGIITERDILRALAAGGKR--LLPVKEVMTKP--VVTVDPDTPL   81 (117)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe--e-CCEEEEEEEHHHHHHHHhccCCc--cccHHHhccCC--cEEECCCCCH
Confidence            8999999999999999999999999999  3 34799999999988876543321  12689999973  8999999999


Q ss_pred             HHHHHHHHh-CCCCEEEEeeC-C-eEEEEEeHHHHH
Q 028667          151 LRAMQLMTD-NRIRHIPVIDD-K-GMIGMVSIGDVV  183 (205)
Q Consensus       151 ~~a~~~~~~-~~~~~~pVv~~-~-~~vGiIt~~dil  183 (205)
                      .++++.|.. ++...+||+++ + +++|++|..|++
T Consensus        82 ~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          82 EEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            999999999 79999999998 4 999999999873

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.48  E-value=6.1e-13  Score=95.94  Aligned_cols=98  Identities=23%  Similarity=0.386  Sum_probs=78.8

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC----------cCcccccccc---
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK----------STKVGDIMTE---  137 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~----------~~~v~~im~~---  137 (205)
                      +..+.+++++.+|++.|..++.+.+||+  |++|+++|+++..|+++.+........          ...+.++|.+   
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~Vv--D~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVV--DSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            7899999999999999999999999999  888999999999998876643221100          0113446531   


Q ss_pred             ----CCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC
Q 028667          138 ----ENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD  170 (205)
Q Consensus       138 ----~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~  170 (205)
                          ..+++++++++++.+|++.|.+++++.+||+++
T Consensus        81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence                114889999999999999999999999999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.44  E-value=2.2e-12  Score=113.42  Aligned_cols=124  Identities=27%  Similarity=0.364  Sum_probs=106.3

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------  124 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---------  124 (205)
                      .+|+++|.++       ++++++++++.+|++.|.+++.+.+||+  |++|+++|+|+..|+.+.+.....         
T Consensus        68 ~~V~dim~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~  138 (546)
T PRK14869         68 PQVRDLEIDK-------PVTVSPDTSLKEAWNLMDENNVKTLPVV--DEEGKLLGLVSLSDLARAYMDILDPEILSKSPT  138 (546)
T ss_pred             CcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCC
Confidence            6899999976       8999999999999999999999999999  888999999999998875443110         


Q ss_pred             -------------------------------------------------------------------------C------
Q 028667          125 -------------------------------------------------------------------------S------  125 (205)
Q Consensus       125 -------------------------------------------------------------------------~------  125 (205)
                                                                                               .      
T Consensus       139 t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~  218 (546)
T PRK14869        139 SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVL  218 (546)
T ss_pred             CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHH
Confidence                                                                                     0      


Q ss_pred             ------------------------CCcCccccccc-cCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeH
Q 028667          126 ------------------------SKSTKVGDIMT-EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSI  179 (205)
Q Consensus       126 ------------------------~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~  179 (205)
                                              ....+++++|+ ++  +.++++++++.++.+.|.+++...+||+|+ |+++|+||+
T Consensus       219 ~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~--~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~  296 (546)
T PRK14869        219 ELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTED--LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISR  296 (546)
T ss_pred             HHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCC--cEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEH
Confidence                                    01246778898 54  999999999999999999999999999996 999999999


Q ss_pred             HHHHHHHHh
Q 028667          180 GDVVRAVVS  188 (205)
Q Consensus       180 ~dil~~l~~  188 (205)
                      .|+++...+
T Consensus       297 ~dl~~~~~~  305 (546)
T PRK14869        297 YHLLSPVRK  305 (546)
T ss_pred             HHhhccccC
Confidence            999986553

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.35  E-value=3.3e-12  Score=103.75  Aligned_cols=137  Identities=18%  Similarity=0.311  Sum_probs=116.2

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      ++.++|.|+|.+..+     +..++.+++.+++.+.+....+..+|+.. |+-++.+|++..+++++.+..... .....
T Consensus       197 Le~~tV~DIMvpR~~-----i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnIiGvlh~r~llr~l~e~~~-~~k~d  269 (423)
T COG4536         197 LENLTVSDIMVPRNE-----IIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNIIGVLHVRDLLRLLNEKNE-FTKED  269 (423)
T ss_pred             cccceeeeeeccccc-----eeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHhhhhhhHHHHHHHhhccCc-ccHhH
Confidence            689999999999755     88999999999999999999999999996 566779999999998887654432 33344


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHH
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRL  197 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l  197 (205)
                      +..+..+   |+.+++.+++.+-+..|.+++-+...|+|+ |.+.|+||.+||++.+.+...+.+...
T Consensus       270 ~~~~a~e---pyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~  334 (423)
T COG4536         270 ILRAADE---PYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTL  334 (423)
T ss_pred             HHHHhcC---CeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCccc
Confidence            4444455   999999999999999999999999999999 999999999999999998877554443

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.23  E-value=6.9e-11  Score=72.26  Aligned_cols=56  Identities=27%  Similarity=0.504  Sum_probs=52.2

Q ss_pred             HhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        56 v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      |+++|.++       ++++++++++.++.+.|.+++.+.+||+  |++|+++|+|+.+|+++.+.
T Consensus         1 v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPP-------PITVSPDDSLEEALEIMRKNGISRLPVV--DEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSS-------SEEEETTSBHHHHHHHHHHHTSSEEEEE--STTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCC-------CEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHhhhh
Confidence            68899986       9999999999999999999999999999  89999999999999988653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.20  E-value=7.8e-11  Score=72.02  Aligned_cols=55  Identities=42%  Similarity=0.758  Sum_probs=51.2

Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      ++++|++.  ++++++++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++++.
T Consensus         1 v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPP--PITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSS--SEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCC--CEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            46889884  999999999999999999999999999986 99999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.10  E-value=2.8e-09  Score=89.06  Aligned_cols=107  Identities=22%  Similarity=0.408  Sum_probs=91.1

Q ss_pred             eEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHH
Q 028667           72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVL  151 (205)
Q Consensus        72 ~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~  151 (205)
                      ....++.+..++.+.|...+...++|+  ++++++.|+++.+++.....      ....+.+.+.+.  ..++++++++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~  322 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVV--DRQNKLVGVVDVESIKQARK------KAQGLQDVLIDD--IYTVDAGTLLR  322 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEE--cCCCCEEEEEeHHHHHHHhh------cCCchhhhhccC--CceECCCCcHH
Confidence            455667789999999999999999999  88999999999999764321      223577777764  88999999999


Q ss_pred             HHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          152 RAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       152 ~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +++..|.+++.+ +||+++ |+++|+|++.++++.+...
T Consensus       323 ~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       323 ETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             HHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence            999999999999 999996 9999999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.09  E-value=2.7e-09  Score=90.13  Aligned_cols=105  Identities=15%  Similarity=0.244  Sum_probs=89.3

Q ss_pred             eCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHH
Q 028667           74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRA  153 (205)
Q Consensus        74 v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a  153 (205)
                      ..++.+..+++..|...+.+.++|+  |++++++|+++..++.+.. .     ....+.+.+.+.  ..++++++++.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~-~-----~~~~~~~~~~~~--~~~~~~~~~~~~~  359 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVI--ERGNKFVGAVSIDSLKTAL-T-----QQQGLDAALIDA--PLAVDAQTPLSEL  359 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEE--cCCCcEEEEEeHHHHHhhh-h-----cCCchhhhhccC--CceeCCCCCHHHH
Confidence            4467788999999999999999999  8999999999999975432 1     123577777664  8899999999999


Q ss_pred             HHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          154 MQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       154 ~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +..+..+..+ +||+|+ |+++|+|+..++++.+...
T Consensus       360 ~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        360 LSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             HHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            9999998877 999996 9999999999999998653

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.09  E-value=1.7e-09  Score=90.71  Aligned_cols=117  Identities=18%  Similarity=0.309  Sum_probs=94.3

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc-cccccc----cCCceEEEc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK-VGDIMT----EENKLITVS  145 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~-v~~im~----~~~~~~~v~  145 (205)
                      +..+..++++.+|++.|...+.+.+||+  +..|+.+|.++..|.........-...... ++....    ...+++++.
T Consensus       239 i~~i~~~~~v~~al~~m~~~~is~lpvV--~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~  316 (381)
T KOG1764|consen  239 IASISEDTPVIEALKIMSERRISALPVV--DENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR  316 (381)
T ss_pred             heeecCCCcHHHHHHHHHhcCcCcceEE--cCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence            7889999999999999999999999999  888888999999996544332221111222 222211    112479999


Q ss_pred             CCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          146 PDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       146 ~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +++++.+++..|.+++++++.|+++ |.++|+||..|++..+...
T Consensus       317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence            9999999999999999999999998 9999999999999998743

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.01  E-value=8.7e-10  Score=90.60  Aligned_cols=110  Identities=22%  Similarity=0.334  Sum_probs=96.2

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEec-CCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCC
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKP-GEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  148 (205)
                      +++.++|+.++.++++....+++..+||.++ --.++++|+||.+|+ .++     ......++++|+++  +++.+++.
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~-----~~~~~~~~~vmt~~--~~~~~~gi  188 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL-----EDNSLLVSDVMTKN--PVTGAQGI  188 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh-----hcccchhhhhcccc--cccccccc
Confidence            4889999999999999999999999999942 123689999999995 544     23467899999997  79999999


Q ss_pred             cHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          149 KVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       149 ~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      ++.++-+++.++.-+.+||+|+ |+++.+|+++|+.+...
T Consensus       189 ~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~  228 (503)
T KOG2550|consen  189 TLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRD  228 (503)
T ss_pred             cHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcC
Confidence            9999999999999999999998 99999999999988643

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.88  E-value=1e-09  Score=94.33  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=95.9

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      .+.+++++|.+.       ++++++++++.++++.|.+++...+||+  |++|+++|+|+.+|++..+..       ...
T Consensus       193 ~~~~v~~im~~~-------~~~v~~~~~~~eal~~m~~~~~~~lpVV--D~~g~lvGiIt~~Dil~~l~~-------~~~  256 (449)
T TIGR00400       193 PEEILSSIMRSS-------VFSIVGVNDQEEVARLIQKYDFLAVPVV--DNEGRLVGIVTVDDIIDVIQS-------EAT  256 (449)
T ss_pred             CCCcHHHHhCCC-------CeeECCCCCHHHHHHHHHHcCCCEEeEE--cCCCeEEEEEEHHHHHHHHHh-------hhH
Confidence            456799999986       8899999999999999999999999999  889999999999999876532       234


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                      +++|+..  ..+..+++.+.+++..|.+++..|++|+   .+.|+++ ..++..+.+..
T Consensus       257 ed~~~~~--gv~~~~~~~l~~~~~~~~~~R~~wL~v~---~~~~~~t-~~ii~~f~~~l  309 (449)
T TIGR00400       257 EDFYMIA--AVKPLDDSYFDTSILVMAKNRIIWLLVL---LVSSTFT-ATIISNYEDLL  309 (449)
T ss_pred             HHHHHhc--CCCCCcchhhhchHHHHHHhccchHHHH---HHHHHHH-HHHHHHHHHHH
Confidence            7888763  4444456788999999999999999885   6778888 77777765443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.87  E-value=4e-09  Score=90.82  Aligned_cols=128  Identities=18%  Similarity=0.266  Sum_probs=104.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEec---CCCCceEEEEehHHHHHHHHHc----C
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP---GEQKSVAGIITERDYLRKIIVQ----G  123 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~---d~~~~~~G~v~~~dll~~~~~~----~  123 (205)
                      +++++++|+|+++       +..+..-..+..+.+.++...+..+||+|.   ++.+++.|+|-++.++..+..+    .
T Consensus       579 mr~L~a~ev~~~p-------vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~  651 (762)
T KOG0474|consen  579 MRNLTAGEVMSKP-------VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEE  651 (762)
T ss_pred             hhhhhHhhhccCC-------eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhcc
Confidence            5789999999996       899999999999999999999999999952   1226789999999977544211    0


Q ss_pred             -CC--------------------------------CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC
Q 028667          124 -RS--------------------------------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD  170 (205)
Q Consensus       124 -~~--------------------------------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~  170 (205)
                       ..                                ..-.++..+|.+.  |.++++++++..+..+|+.-++.++.|++.
T Consensus       652 ~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~s--PytV~~~mSl~k~~~lFR~lGLRhLlVv~~  729 (762)
T KOG0474|consen  652 SRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPS--PYTVPETMSLAKAFILFRQLGLRHLLVVPK  729 (762)
T ss_pred             CccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCC--CcccCcccchHHHHHHHHHhcceeEEEecC
Confidence             00                                0013566778886  999999999999999999999999999997


Q ss_pred             -CeEEEEEeHHHHHHHHH
Q 028667          171 -KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       171 -~~~vGiIt~~dil~~l~  187 (205)
                       +.++|++|++|+...-.
T Consensus       730 ~~~~~gilTR~D~~~~~~  747 (762)
T KOG0474|consen  730 TNRVVGILTRKDLARYRI  747 (762)
T ss_pred             CCceeEEEehhhhhhHHH
Confidence             88999999999986543

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.75  E-value=5e-08  Score=70.67  Aligned_cols=76  Identities=26%  Similarity=0.493  Sum_probs=63.3

Q ss_pred             ehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          111 TERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       111 ~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                      +.+.+++++.....  ....+..+|+.  +++++++++++.++..+|..+|++.+||+++|+++|-||-.++.+.+.+..
T Consensus        49 t~k~Il~aL~e~e~--~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~  124 (187)
T COG3620          49 TVKRILEALEEAEK--TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGM  124 (187)
T ss_pred             HHHHHHHHHHHhhc--ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccc
Confidence            34455555543322  35678899998  499999999999999999999999999999999999999999999997764

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.64  E-value=1.2e-08  Score=89.81  Aligned_cols=143  Identities=20%  Similarity=0.278  Sum_probs=105.2

Q ss_pred             CCcccccccccccccccccccccccccHhHHhh-hcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceE
Q 028667           29 MLRPVVSSRFESVSSARMEEHGFESTTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA  107 (205)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~m~-~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~  107 (205)
                      ...+.+.+.+.++...+...   ...+|+++|. ++       ++++++++++.++.+.|.+++.+.+||+  |++|+++
T Consensus       224 ~~i~ii~t~~dt~~t~~~l~---~~~~V~~iM~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~PVv--d~~g~lv  291 (546)
T PRK14869        224 NGVTVISTPYDTFTTARLIN---QSIPVSYIMTTED-------LVTFSKDDYLEDVKEVMLKSRYRSYPVV--DEDGKVV  291 (546)
T ss_pred             CCCeEEEecccHHHHHHHhh---cCCCHHHhccCCC-------cEEECCCCcHHHHHHHHHhcCCCceEEE--cCCCCEE
Confidence            35566777777666655543   3578999999 65       8999999999999999999999999999  8899999


Q ss_pred             EEEehHHHHHHHHH------c--------CCC-C------CcCccccccccCCceEEE---cCCCcHHHHHHHHHhCCCC
Q 028667          108 GIITERDYLRKIIV------Q--------GRS-S------KSTKVGDIMTEENKLITV---SPDTKVLRAMQLMTDNRIR  163 (205)
Q Consensus       108 G~v~~~dll~~~~~------~--------~~~-~------~~~~v~~im~~~~~~~~v---~~~~~l~~a~~~~~~~~~~  163 (205)
                      |+|+..|++.....      .        +.. .      ..-+++++|...  ++.+   +...+..-+.++|.+.++.
T Consensus       292 Giit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~--pi~~~~~~~gst~tiv~~~~~~~~i~  369 (546)
T PRK14869        292 GVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSN--PIFFRNEPVGSTSTIVARMYRENGIE  369 (546)
T ss_pred             EEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCC--CcEEEeeeeeeHHHHHHHHHHHcCCC
Confidence            99999998863321      0        000 0      011345566553  4333   4456777889999999988


Q ss_pred             EEEEeeCCeEEEEEeHHHHHHH
Q 028667          164 HIPVIDDKGMIGMVSIGDVVRA  185 (205)
Q Consensus       164 ~~pVv~~~~~vGiIt~~dil~~  185 (205)
                      ..|++....+.|+++-+..++.
T Consensus       370 ~~~~ia~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        370 PSPEIAGLLLAAILSDTLLFKS  391 (546)
T ss_pred             CCHHHHHHHHHHHHHHhcCccC
Confidence            8888776678888888777764

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.59  E-value=1.6e-06  Score=75.18  Aligned_cols=114  Identities=18%  Similarity=0.269  Sum_probs=93.7

Q ss_pred             ceEeCC-CchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC----------------------CCC
Q 028667           71 WLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----------------------SSK  127 (205)
Q Consensus        71 ~~~v~~-~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~----------------------~~~  127 (205)
                      ...++. ++++.+...+|.+..++.+||+-+.+..+++|+|.++++.-.+...+.                      ...
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~  637 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS  637 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence            444444 489999999999999999999965677889999999998876652210                      012


Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHH
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV  186 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l  186 (205)
                      ...++++|...  |.++...++.+.+.++|++-+.....|.++|++.|+||++|++...
T Consensus       638 ~~~lk~il~~t--p~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  638 RLDLKDILDMT--PFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CcCceeeccCC--cccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHhh
Confidence            23577888875  9999999999999999999999999999999999999999999865

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.57  E-value=1.9e-07  Score=72.73  Aligned_cols=59  Identities=32%  Similarity=0.558  Sum_probs=55.8

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      -..+|.++|.++       ++++..++.+.+|+++|..++...+.|+  |.+|+++|+||+.|++.++
T Consensus       232 ~~~kV~~~M~k~-------vitI~eDe~i~dAir~M~~~nVGRLlV~--ds~gkpvGiITrTDIL~~i  290 (294)
T COG2524         232 LDAKVSDYMRKN-------VITINEDEDIYDAIRLMNKNNVGRLLVT--DSNGKPVGIITRTDILTRI  290 (294)
T ss_pred             ccccHHHHhccC-------CceEcCchhHHHHHHHHHhcCcceEEEE--ccCCcEEEEEehHHHHHHh
Confidence            468999999997       9999999999999999999999999999  8999999999999999865

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.52  E-value=2.7e-07  Score=63.78  Aligned_cols=56  Identities=20%  Similarity=0.307  Sum_probs=50.5

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|...       +.++.+++++.++++.|.+++.+.+||+  |++|+++|+||.+|+++
T Consensus        55 ~~~v~~~~~~~-------~~~v~~~~~l~~al~~m~~~~~~~lpVv--d~~~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIVP-------VPIVYCDSKVTDLLRIFRETEPPVVAVV--DKEGKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeecC-------CcEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCeEEEEEEhHHhhc
Confidence            35699999765       8899999999999999999999999999  77899999999999764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=5.1e-07  Score=62.67  Aligned_cols=56  Identities=21%  Similarity=0.383  Sum_probs=51.3

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      ...++.++|..+       ++++.+++++.++++.|.+++...+||+  +++|+++|+|+.+|++
T Consensus        57 ~~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~Gvi~~~dl~  112 (114)
T cd04619          57 CTAPVENVMTRA-------VVSCRPGDLLHDVWQVMKQRGLKNIPVV--DENARPLGVLNARDAL  112 (114)
T ss_pred             ccCCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEhHhhc
Confidence            356799999876       8999999999999999999999999999  7889999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.44  E-value=5.8e-07  Score=62.67  Aligned_cols=54  Identities=30%  Similarity=0.437  Sum_probs=50.1

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      .+++++|.+.       +..+.+++++.++++.|.+.+.+.+||+  |++|+++|+|+..++.
T Consensus        58 ~~v~dim~~~-------~~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINRK-------PVTARPNDPLREALNLMHEHNIRTLPVV--DDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCCC-------CCEECCcCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHhh
Confidence            6799999876       8899999999999999999999999999  8889999999999964

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.40  E-value=7.8e-07  Score=62.02  Aligned_cols=54  Identities=28%  Similarity=0.596  Sum_probs=49.3

Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR  184 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~  184 (205)
                      .++.++|.+.  +.++++++++.++++.|.+++...+||+++ |+++|+|+..|+.+
T Consensus        58 ~~v~dim~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRK--PVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCC--CCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            5689999875  889999999999999999999999999986 89999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.37  E-value=4.8e-07  Score=71.96  Aligned_cols=60  Identities=30%  Similarity=0.607  Sum_probs=54.7

Q ss_pred             CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      .......++|.++  +++++.++++.+|++.|.+|++..+||+|+ .+++|+|+++|+++...
T Consensus       242 ~~~LtcadIMSrd--Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~  302 (382)
T COG3448         242 MGELTCADIMSRD--VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR  302 (382)
T ss_pred             hccccHHHhcCcc--ceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC
Confidence            3467889999996  999999999999999999999999999998 68999999999998544

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.37  E-value=4.5e-06  Score=70.22  Aligned_cols=119  Identities=24%  Similarity=0.395  Sum_probs=96.5

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC-----cCccccccccC-CceEEE
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK-----STKVGDIMTEE-NKLITV  144 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~-----~~~v~~im~~~-~~~~~v  144 (205)
                      ++.+.|..++.++...+.+++++++||.+ .+.+.++.++|.+.+++.+........     ..++.++-... ..+..+
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d-~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i  242 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVID-PETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASI  242 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeec-ccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheee
Confidence            48999999999999999999999999994 377899999999999987765443221     22333332211 138889


Q ss_pred             cCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          145 SPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       145 ~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      ..++++.+|++.|...++..+||++. |+.+|.++..|+........
T Consensus       243 ~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~  289 (381)
T KOG1764|consen  243 SEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGT  289 (381)
T ss_pred             cCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCc
Confidence            99999999999999999999999997 77899999999999887554

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.35  E-value=1.9e-06  Score=59.45  Aligned_cols=55  Identities=16%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      ..++.++|.+.       +.++.+++++.++++.|.+++.+.+||+  +++|+++|+|+.+|++
T Consensus        57 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~  111 (113)
T cd04607          57 DDPVSEVMNRN-------PITAKVGSSREEILALMRERSIRHLPIL--DEEGRVVGLATLDDLL  111 (113)
T ss_pred             CCCHHHhhcCC-------CEEEcCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEhHHhc
Confidence            35799999876       8899999999999999999999999999  7889999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.32  E-value=2e-06  Score=60.26  Aligned_cols=57  Identities=21%  Similarity=0.363  Sum_probs=51.3

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...+++++|...       +.++.+++++.++++.|.+.+.+.+||+  +++|+++|+|+..|+++
T Consensus        67 ~~~~i~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPP-------VVTVRPDTPIAELVPLLADGGHHHVPVV--DEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCC-------CeeeCCCCcHHHHHHHHHhcCCCceeEE--cCCCCEEEEEEhHHhhc
Confidence            345799999875       8999999999999999999999999999  78899999999999764

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.31  E-value=2.9e-06  Score=58.44  Aligned_cols=57  Identities=21%  Similarity=0.313  Sum_probs=51.1

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|.+.       +.++.+++++.++++.|..++...+||+  +++++++|+|+..|+++
T Consensus        57 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~iG~it~~di~~  113 (114)
T cd04604          57 LTLPVADVMTRN-------PKTIDPDALAAEALELMEENKITALPVV--DDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             ccCCHHHhhccC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEEEHHHhhc
Confidence            335799999886       8899999999999999999999999999  77899999999999763

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=1.7e-06  Score=60.33  Aligned_cols=59  Identities=24%  Similarity=0.333  Sum_probs=50.1

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC---CceEEEEehHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYL  116 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~---~~~~G~v~~~dll  116 (205)
                      +...+++++|.+...     ++++.+++++.++++.|.+++.+.+||+  +++   |+++|+|+..+++
T Consensus        55 ~~~~~~~~~~~~~~~-----~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          55 LQKVPVGVIMTRMPN-----ITTTTPEESVLEAAKKLIEHQVDSLPVV--EKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             ccCCCHHHHhCCCCC-----cEEECCCCcHHHHHHHHHHcCCCEeeEE--eCCCccceEEEEEEhhhee
Confidence            346778999975111     7899999999999999999999999999  555   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11573 hypothetical protein; Provisional

Probab=98.30  E-value=4.4e-06  Score=71.15  Aligned_cols=71  Identities=18%  Similarity=0.332  Sum_probs=61.3

Q ss_pred             HHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHHHHH
Q 028667          113 RDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       113 ~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~  187 (205)
                      ++++..++    ...+.+++++|+|+.++..++.++++.++++.+.+++++++||+++  +.++|+|..+|++..+.
T Consensus       175 ~~mi~~vl----~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~  247 (413)
T PRK11573        175 QDMLLSVL----DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT  247 (413)
T ss_pred             HHHHHHHh----ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence            34444444    4567899999999889999999999999999999999999999986  78999999999997654

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=2.4e-06  Score=59.07  Aligned_cols=56  Identities=16%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCC--chHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~--~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+.       ++++.++  .++.++++.|.+++...+||+  +++|+++|+|+.+++++
T Consensus        57 ~~~i~~~~~~~-------~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQP-------VVTLQESEIQDIFTALSLFRQHQIRHLPVL--DDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCCC-------cEEEecccccCHHHHHHHHHHhCCceEEEE--cCCCCEEEEEEhHHhhc
Confidence            46789999875       7888887  789999999999999999999  78899999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.29  E-value=2.6e-06  Score=58.47  Aligned_cols=56  Identities=29%  Similarity=0.406  Sum_probs=50.9

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +.+++++|.+.       +..+.+++++.++++.|...+...+||+  +++|+++|+|+..++++
T Consensus        52 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dll~  107 (109)
T cd04606          52 DTPVSDIMDTD-------VISVSADDDQEEVARLFEKYDLLALPVV--DEEGRLVGIITVDDVID  107 (109)
T ss_pred             cchHHHHhCCC-------CeEEcCCCCHHHHHHHHHHcCCceeeeE--CCCCcEEEEEEhHHhhh
Confidence            45799999875       8899999999999999999999999999  78899999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=3e-06  Score=58.33  Aligned_cols=58  Identities=24%  Similarity=0.456  Sum_probs=51.7

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +...++.++|.+.       +.++.+++++.++++.|.+++...+||+  +++|+++|+++..++++
T Consensus        55 ~~~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          55 LKDAKVREVMNSP-------VITIDANDSIAKARWLMSNNNISRLPVL--DDKGKVGGIVTEDDILR  112 (113)
T ss_pred             hcCCcHHHhccCC-------ceEECCCCcHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEEHHHhhc
Confidence            4557899999875       8899999999999999999999999999  78899999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.28  E-value=3.3e-06  Score=57.83  Aligned_cols=57  Identities=25%  Similarity=0.365  Sum_probs=51.3

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|...       +.++.+++++.++.+.|.+++...+||+  +++|+++|+++..++++
T Consensus        51 ~~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~di~~  107 (108)
T cd04596          51 PDTTIEKVMTKN-------PITVNPKTSVASVAHMMIWEGIEMLPVV--DDNKKLLGIISRQDVLK  107 (108)
T ss_pred             ccccHHHHhcCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEE--cCCCCEEEEEEHHHhhc
Confidence            346799999875       8899999999999999999999999999  88899999999999763

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.28  E-value=7.2e-06  Score=66.76  Aligned_cols=95  Identities=15%  Similarity=0.137  Sum_probs=70.9

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc-c
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV-G  132 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v-~  132 (205)
                      .++.++|++        +.++++++++.++++.|++++.+.+||+  |+.|.++|+||..|++..+...-....+..- .
T Consensus       133 ~~l~~l~r~--------~~~V~e~~~l~~~L~~m~~~~~~~a~Vv--De~G~viGiVTleDIle~ivGei~de~d~~~~~  202 (292)
T PRK15094        133 FSMDKVLRQ--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIVGEIEDEYDEEDDI  202 (292)
T ss_pred             CCHHHHcCC--------CcCcCCCCcHHHHHHHHHhcCCEEEEEE--eCCCCEEEEeEHHHHHHHHhCCCcccccccccc
Confidence            457888876        6689999999999999999999999999  8889999999999999987643211111111 1


Q ss_pred             cccccCCceEEEcCCCcHHHHHHHHH
Q 028667          133 DIMTEENKLITVSPDTKVLRAMQLMT  158 (205)
Q Consensus       133 ~im~~~~~~~~v~~~~~l~~a~~~~~  158 (205)
                      .+-...+.-+.++..+++.+..+.+.
T Consensus       203 ~i~~~~~~~~~v~G~~~l~dl~~~l~  228 (292)
T PRK15094        203 DFRQLSRHTWTVRALASIEDFNEAFG  228 (292)
T ss_pred             ccEEeCCCeEEEEeccCHHHHHHHhC
Confidence            12221113688999999998887763

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.28  E-value=3.2e-06  Score=58.81  Aligned_cols=56  Identities=32%  Similarity=0.479  Sum_probs=50.7

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+.       +.++.+++++.++++.|.+.+.+.+||+  +++|+++|+|+..|+++
T Consensus        66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRD-------PITVSPDASVEEAAELMLERKISGLPVV--DDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCC-------CeEeCCCCcHHHHHHHHHHcCCCceeEE--CCCCcEEEEEEHHHhhh
Confidence            46788999875       8999999999999999999999999999  77799999999999764

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=3.2e-06  Score=58.51  Aligned_cols=56  Identities=18%  Similarity=0.286  Sum_probs=50.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|...       ++++++++++.++++.|.+.+...+||+  ++ |+++|+|+..|+++
T Consensus        58 ~~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTKP-------LISVSPDMDIKYCARLMERTNIRRAPVV--EN-NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCEeeEe--eC-CEEEEEEEHHHhhc
Confidence            346799999775       8999999999999999999999999999  66 99999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=2.3e-06  Score=58.02  Aligned_cols=56  Identities=20%  Similarity=0.275  Sum_probs=46.2

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~  117 (205)
                      .+..|+.....      +.++.+++++.+|++.|.+++.+.+||+  +++ |+++|+|+.+|+++
T Consensus        41 vt~~Dl~~~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~giit~~d~~~   97 (98)
T cd04618          41 LTITDFILILR------LVSIHPERSLFDAALLLLKNKIHRLPVI--DPSTGTGLYILTSRRILK   97 (98)
T ss_pred             EEHHHHhhhee------eEEeCCCCcHHHHHHHHHHCCCCEeeEE--ECCCCCceEEeehhhhhc
Confidence            45555554320      5789999999999999999999999999  666 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.24  E-value=5.1e-06  Score=58.74  Aligned_cols=51  Identities=24%  Similarity=0.588  Sum_probs=45.8

Q ss_pred             ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      ++.++++++++.++++.|.+++...+||+++ |+++|+|+..++++.+....
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~   54 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK   54 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc
Confidence            4888999999999999999999999999987 89999999999998766543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.24  E-value=4.6e-06  Score=56.78  Aligned_cols=56  Identities=27%  Similarity=0.472  Sum_probs=50.2

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..+++++|...       +.++.+++++.++++.|.+++...+||+  +++|+++|+++..++++
T Consensus        51 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSKD-------LVVAVPEMDIMDAARVMFRTGISKLPVV--DENNNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCCC-------CeEECCCCCHHHHHHHHHHhCCCeEeEE--CCCCeEEEEEEHHHhhc
Confidence            35699999775       8899999999999999999999999999  78899999999999764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.24  E-value=5e-06  Score=58.09  Aligned_cols=49  Identities=20%  Similarity=0.501  Sum_probs=44.8

Q ss_pred             ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      ++.++++++++.+|++.|.+++.+.+||+++ |+++|+++..|++..+.+
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~   51 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKE   51 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhc
Confidence            4789999999999999999999999999986 899999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=4.6e-06  Score=57.34  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=49.3

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|...       +..+.+++++.++++.|.+++...+||+  + +|+++|+|+.+++++
T Consensus        57 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNPE-------PIVASPDDSIDEVRRLMVERHLRYLPVL--D-GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEE--E-CCEEEEEEEHHHhhc
Confidence            46799999875       8899999999999999999999999999  5 589999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.21  E-value=1.2e-05  Score=70.06  Aligned_cols=113  Identities=15%  Similarity=0.271  Sum_probs=78.7

Q ss_pred             cccHhHHhh-hcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---CCCc
Q 028667           53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---SSKS  128 (205)
Q Consensus        53 ~~~v~d~m~-~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---~~~~  128 (205)
                      ..++.++|. ..       ++++.+++++.++++.|.+++.+.+||+  |++|+++|+|+.+|+++.+.....   ....
T Consensus       146 ~~~V~dim~~~~-------~v~v~~~~sl~eal~~m~~~~~~~lpVV--De~g~lvGiIT~~DLl~~~~~p~a~~d~~g~  216 (486)
T PRK05567        146 SQPVSEVMTKER-------LVTVPEGTTLEEALELLHEHRIEKLPVV--DDNGRLKGLITVKDIEKAEEFPNACKDEQGR  216 (486)
T ss_pred             CCcHHHHcCCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHhhhhhhCCCcccccCCC
Confidence            357899997 33       8999999999999999999999999999  899999999999998876432110   0011


Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee--CCeEEEEEeHHHHHH
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID--DKGMIGMVSIGDVVR  184 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~--~~~~vGiIt~~dil~  184 (205)
                      ..+...|..       ++ .+ .+..+.|.+.+++.+ |+|  +++..|+++.-+.++
T Consensus       217 l~V~aai~~-------~~-~~-~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~  264 (486)
T PRK05567        217 LRVGAAVGV-------GA-DN-EERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIK  264 (486)
T ss_pred             EEEEeeccc-------Cc-ch-HHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHH
Confidence            123333333       22 22 666777778889855 556  367766665444443

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.21  E-value=1.5e-05  Score=67.82  Aligned_cols=94  Identities=12%  Similarity=0.187  Sum_probs=71.5

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccc
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~i  134 (205)
                      +++++|++        +.++++++++.++++.|++++.+.++|+  |+.|...|+||.+|++..+...-.+..+ .-.+.
T Consensus       256 ~l~~~~~~--------~~~Vpe~~~l~~ll~~m~~~~~~~aiVv--DE~G~~~GiVT~eDileeivgei~de~d-~~~~~  324 (408)
T TIGR03520       256 DWQSLLRE--------PYFVPENKKLDDLLRDFQEKKNHLAIVV--DEYGGTSGLVTLEDIIEEIVGDISDEFD-DEDLI  324 (408)
T ss_pred             CHHHHcCC--------CeEeCCCCcHHHHHHHHHhcCceEEEEE--cCCCCEEEEEEHHHHHHHHhCCCCCcCC-cCccc
Confidence            45666654        8899999999999999999999999999  8999999999999999987643211111 11222


Q ss_pred             ccc-CCceEEEcCCCcHHHHHHHHHh
Q 028667          135 MTE-ENKLITVSPDTKVLRAMQLMTD  159 (205)
Q Consensus       135 m~~-~~~~~~v~~~~~l~~a~~~~~~  159 (205)
                      +.. .+..+.++...++.++.+.|.-
T Consensus       325 i~~~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       325 YSKIDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             eEEeCCCeEEEEeccCHHHHHHHhCC
Confidence            322 1237889999999999988844

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.21  E-value=5.6e-06  Score=56.29  Aligned_cols=55  Identities=20%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .+++++|.+.       +..+.+++++.++++.|.+++...+||+  +++|+++|+|+.+++++
T Consensus        51 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          51 GCCGDHAEPF-------KVTVSVDDDLRIVLSRMFAHDMSWLPCV--DEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             cchhhhcccC-------CEEECCCCCHHHHHHHHHHCCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            3588888775       7889999999999999999999999999  78899999999999763

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=6.6e-06  Score=57.43  Aligned_cols=57  Identities=30%  Similarity=0.571  Sum_probs=51.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|...       +.++.+++++.++++.|.+.+.+.+||+  +++|+++|+++..|++.
T Consensus        65 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKTD-------VLTVTPDTPLREAAEIMVENKIGCLPVV--DDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCCC-------CeEeCCCCcHHHHHHHHHHcCCCeEEEE--cCCCCEEEEEEHHHhhc
Confidence            456899999875       8899999999999999999999999999  77789999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.20  E-value=6e-06  Score=56.52  Aligned_cols=57  Identities=26%  Similarity=0.527  Sum_probs=50.7

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|.+.       ++++.+++++.++++.|.+.+...+||+  +++|+++|+|+.+++++
T Consensus        54 ~~~~v~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSSP-------LLTVPADTSLYDARQLMREHGIRHLVVV--DDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCCC-------ceEECCCCCHHHHHHHHHHcCCeEEEEE--CCCCcEEEEEEhHHhhc
Confidence            356799999875       8899999999999999999999999999  77899999999999763

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.20  E-value=5.5e-06  Score=56.52  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=50.3

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|...       +..+++++++.++++.|.+.+...+||+  +++|+++|+++.+++++
T Consensus        53 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~vv--~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          53 AKSLEDIMLED-------VFTVQPDASLRDVLGLVLKRGPKYVPVV--DEDGKLVGLITRSSLVD  108 (109)
T ss_pred             CCcHhHhhcCC-------ceEECCCCcHHHHHHHHHHcCCceeeEE--CCCCeEEEEEehHHhhc
Confidence            35688999875       8999999999999999999999999999  88899999999999763

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=6e-06  Score=57.64  Aligned_cols=57  Identities=33%  Similarity=0.545  Sum_probs=50.9

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|...       +..+.+++++.++++.|.+++.+.+||+  +++|+++|+++..++++
T Consensus        65 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMSTP-------VYSVTPDDSIATAVELMLEHDIGRLPVV--NEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeeeEE--cCCCcEEEEEEhHHhhc
Confidence            356788999765       8999999999999999999999999999  77899999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.19  E-value=7.5e-06  Score=46.85  Aligned_cols=46  Identities=37%  Similarity=0.793  Sum_probs=42.1

Q ss_pred             eEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHH
Q 028667          141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAV  186 (205)
Q Consensus       141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l  186 (205)
                      +.++++++++.++++.|...+...+||+++ ++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            677899999999999999999999999987 8999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.19  E-value=5.1e-06  Score=57.14  Aligned_cols=54  Identities=22%  Similarity=0.324  Sum_probs=49.4

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      .++.++|.+.       +.++.+++++.++++.|.+++...+||+  +++++++|+|+..|++
T Consensus        58 ~~v~~i~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~~~~~~Gvvs~~dl~  111 (113)
T cd04587          58 TLVERVMTPN-------PVCATSDTPVLEALHLMVQGKFRHLPVV--DKSGQVVGLLDVTKLT  111 (113)
T ss_pred             CCHHHhcCCC-------CeEEcCCCCHHHHHHHHHHcCCCcccEE--CCCCCEEEEEEHHHhc
Confidence            6799999875       8899999999999999999999999999  7779999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=6.6e-06  Score=57.67  Aligned_cols=56  Identities=34%  Similarity=0.557  Sum_probs=50.3

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+.       ++++++++++.++++.|.+.+...+||+  +++|+++|+|+..|+++
T Consensus        69 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRN-------VITITPDDSIKDAAELMLEKRVGGLPVV--DDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCC-------ceEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCcEEEEEEHHHhhc
Confidence            45788998875       8999999999999999999999999999  77799999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.18  E-value=3.8e-06  Score=58.03  Aligned_cols=58  Identities=26%  Similarity=0.472  Sum_probs=49.6

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+...     ++.+.+++++.++++.|.+++.+.+||+  +++|+++|+++.+++++
T Consensus        56 ~~~v~~~~~~~~~-----~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAK-----LVTVLSEESLAEVLKLLEEQGLDELAVV--EDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhccccc-----ceEECCCCcHHHHHHHHHHCCCCeeEEE--cCCCcEEEEEeccceec
Confidence            4678899975321     5689999999999999999999999999  77789999999999753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.18  E-value=6.9e-06  Score=56.34  Aligned_cols=55  Identities=31%  Similarity=0.430  Sum_probs=49.3

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..+++++|.+.       +.++.++.++.++++.|.+.+.+.+||+  ++ |+++|+|+.+++++
T Consensus        58 ~~~~~~~~~~~-------~~~v~~~~~~~~~l~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTRN-------VITVTPDDTVDEAMALMTERRFRHLPVV--DG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCCC-------cEEECCCCcHHHHHHHHHHcCCCEeEEE--eC-CEEEEEEEHHHhhc
Confidence            45799999775       8999999999999999999999999999  55 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=5.2e-06  Score=58.25  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=41.0

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY  115 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dl  115 (205)
                      +.++.+++++.+|++.|.+++.+.+||+  +++++++|+||.+|+
T Consensus        78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~vGiit~~di  120 (123)
T cd04627          78 VISINGDQPLIDALHLMHNEGISSVAVV--DNQGNLIGNISVTDV  120 (123)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCceEEEE--CCCCcEEEEEeHHHh
Confidence            8899999999999999999999999999  888999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=7.1e-06  Score=56.27  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      ..++.++|...       ++.+.+++++.++++.|.+++...+||+  +++|+++|+++..|+.
T Consensus        55 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~  109 (111)
T cd04639          55 DAPVRGVMRRD-------FPTVSPSATLDAVLRLMQQGGAPAVPVV--DGSGRLVGLVTLENVG  109 (111)
T ss_pred             CCcHHHHhcCC-------CcEECCCCcHHHHHHHHHhcCCceeeEE--cCCCCEEEEEEHHHhh
Confidence            35789999765       8899999999999999999999999999  7779999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=7.3e-06  Score=58.87  Aligned_cols=55  Identities=31%  Similarity=0.477  Sum_probs=49.4

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+.       +..+.+++++.++++.|.+++.+.+||+  ++ |+++|+|+..++++
T Consensus        80 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTEE-------IITVSPNDDVVDAAKLMLEANISGLPVV--DN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEE--eC-CEEEEEEEHHHHhh
Confidence            45799999875       8899999999999999999999999999  55 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.17  E-value=7.6e-06  Score=56.09  Aligned_cols=56  Identities=23%  Similarity=0.433  Sum_probs=50.4

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|.+.       +..+.+++++.++++.|.+++.+.+||+  + +|+++|+|+..|+++
T Consensus        54 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMSTD-------VVTVPPDTPLSEVQELMVEHDIGRVPVV--E-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcCC-------CEEECCCCcHHHHHHHHHHcCCCeeEEE--e-CCEEEEEEEhHHhhc
Confidence            457899999875       8899999999999999999999999999  6 789999999999763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.16  E-value=9.6e-06  Score=46.38  Aligned_cols=46  Identities=28%  Similarity=0.488  Sum_probs=41.5

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      +.++.+++++.++.+.|.+.+.+.+||+  +++++++|+++..++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVV--DEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEE--CCCCeEEEEEEHHHHHHh
Confidence            6788999999999999999999999999  777899999999997653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.16  E-value=1.4e-05  Score=69.24  Aligned_cols=99  Identities=15%  Similarity=0.252  Sum_probs=70.2

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      .++.++|.++       ++++++++++.+|++.|.+++...+||+  |++++++|+|+.+|+++........  . .-+.
T Consensus       148 ~~V~diMt~~-------~itV~~d~sL~eAl~lM~~~~i~~LPVV--D~~g~lvGIIT~~DIl~~~~~~~~~--~-~~g~  215 (479)
T PRK07807        148 TQVRDVMSTD-------LVTLPAGTDPREAFDLLEAARVKLAPVV--DADGRLVGVLTRTGALRATIYTPAV--D-AAGR  215 (479)
T ss_pred             CCHHHhccCC-------ceEECCCCcHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHhhCCchh--h-hhhc
Confidence            5699999876       9999999999999999999999999999  7889999999999988754321100  0 0011


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID  169 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~  169 (205)
                      .+..  ....+  .....+..+.|.+.+.+.+ ++|
T Consensus       216 l~V~--aav~~--~~~~~~~a~~Lv~aGvd~i-~~D  246 (479)
T PRK07807        216 LRVA--AAVGI--NGDVAAKARALLEAGVDVL-VVD  246 (479)
T ss_pred             cchH--hhhcc--ChhHHHHHHHHHHhCCCEE-EEe
Confidence            1111  12222  2245677777777888875 445

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.16  E-value=7.4e-06  Score=55.95  Aligned_cols=56  Identities=21%  Similarity=0.430  Sum_probs=48.9

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCC-CchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~-~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|...       +..+.+ ++++.++++.|.+.+.+.+||+  +++|+++|+|+.+|+++
T Consensus        53 ~~~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTPE-------NLLTTVEGTSLEEALELLHEHKIEKLPVV--DDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhcccC-------ceEEecCCCCHHHHHHHHHHhCCCeeeEE--cCCCCEEEEEEhhhhhc
Confidence            46899999765       666676 9999999999999999999999  78899999999999764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.16  E-value=6.8e-06  Score=56.86  Aligned_cols=55  Identities=16%  Similarity=0.331  Sum_probs=48.0

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCC--CchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~--~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .+++++|.+.       +..+..  ++++.++++.|.+++...+||+  +++|+++|+|+..++++
T Consensus        57 ~~v~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv--~~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPR-------EVLVVAPTGITLEEANEILRESKKGKLPIV--NDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCC-------ceEEECCCCCCHHHHHHHHHhcCCCceeEE--CCCCeEEEEEEHHHhhc
Confidence            5689999876       566655  9999999999999999999999  88899999999999753

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.15  E-value=2.2e-05  Score=67.90  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ..++.++|.++       ++++++++++.+|+++|.+++...+||+  |++++++|+|+.+|+++..
T Consensus       145 ~~~V~dIMt~~-------litv~~~~sL~eAl~lM~~~~i~~LPVV--D~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       145 FTQVRDIMSTD-------LVTAPADTEPRKAFDLLEHAPRDVAPLV--DADGTLAGILTRTGALRAT  202 (475)
T ss_pred             CCCHHHHccCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence            35799999976       8999999999999999999999999999  8889999999999988754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.14  E-value=8e-06  Score=56.00  Aligned_cols=55  Identities=29%  Similarity=0.472  Sum_probs=49.5

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|...       ++.+.+++++.++++.|.+++.+.+||+  ++ |+++|+++.+|+++
T Consensus        56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTAP-------PITIPPDATVFEALLLMLERGIHHLPVV--DD-GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCCC-------CeEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhc
Confidence            46799999875       8999999999999999999999999999  55 89999999999763

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.14  E-value=2.2e-05  Score=68.31  Aligned_cols=60  Identities=17%  Similarity=0.266  Sum_probs=53.4

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      .+.+|+++|.+...     ++++.+++++.+|++.|.+++...+||+  |++++++|+||.+|+++.
T Consensus       159 ~~~~V~dIMt~~~~-----~itv~~d~~l~eAl~lM~e~~i~~LPVV--D~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        159 LDTKVKDFMTPFEK-----LVTANEGTTLKEANDIIWDHKLNTLPIV--DKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCCHHHHhCCCCC-----eEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEhHHHHhc
Confidence            45789999996322     8899999999999999999999999999  888999999999998864

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.14  E-value=6.4e-06  Score=58.83  Aligned_cols=56  Identities=20%  Similarity=0.375  Sum_probs=50.4

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|.+.       +..+.+++++.++++.|.+.+.+.+||+  + +|+++|+|+..|+++
T Consensus        79 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~l~Vv--d-~g~~~Gvit~~di~~  134 (135)
T cd04586          79 HGRKVADVMTRP-------VVTVGEDTPLAEVAELMEEHRIKRVPVV--R-GGRLVGIVSRADLLR  134 (135)
T ss_pred             cCCCHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCccCEe--c-CCEEEEEEEhHhhhc
Confidence            346799999876       8999999999999999999999999999  7 899999999999763

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.14  E-value=8.1e-06  Score=56.46  Aligned_cols=56  Identities=20%  Similarity=0.341  Sum_probs=49.3

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC--CceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~--~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+.       ++++.+++++.++++.|.+++...+||+  +++  |+++|+|+..++++
T Consensus        57 ~~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~Vv--d~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          57 PSAVDEVATPP-------LLTVHPDEPLAHALDRMASRGLRQLPVV--DRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             cccHHHhccCC-------ceEECCCCCHHHHHHHHHHcCCceeeEE--eCCCCCeEEEEEEhHHhhc
Confidence            34588888875       8999999999999999999999999999  665  89999999999764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.14  E-value=1.1e-05  Score=55.24  Aligned_cols=55  Identities=35%  Similarity=0.640  Sum_probs=49.5

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .++.++|...       +.++.++.++.++++.|.+.+...+||+  +++|+++|+|+..|+++
T Consensus        55 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTKD-------VITIDEDEQLYDAIRLMNKHNVGRLIVT--DDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcCC-------ceEECCCCCHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEEhHHhhc
Confidence            5788998765       8999999999999999999999999999  77799999999999763

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=7.1e-06  Score=56.50  Aligned_cols=55  Identities=29%  Similarity=0.432  Sum_probs=49.3

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+.       +..+.+++++.++++.|.+++...+||+  ++ |+++|+|+..++++
T Consensus        59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTTE-------VLTVSPDDSIVDLAQLMLKAKPKRYPVV--DD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhccC-------ceEECCCCcHHHHHHHHHHhCCCccCEE--EC-CEEEEEEEHHHHhc
Confidence            46799999875       8899999999999999999999999999  55 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.12  E-value=1.4e-05  Score=57.42  Aligned_cols=49  Identities=33%  Similarity=0.564  Sum_probs=45.1

Q ss_pred             ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      ++.++++++++.+|++.|.+.+...+||+|+ |+++|+|+..|+++.+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence            4789999999999999999999999999997 899999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.12  E-value=9.9e-06  Score=54.90  Aligned_cols=54  Identities=19%  Similarity=0.347  Sum_probs=48.9

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      ...+.++|.+.       +..+++++++.++++.|.+++...+||+  ++ |+++|+|+..+++
T Consensus        50 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTRE-------VVTISPEASLLEAKRLMEEKKIERLPVL--RE-RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccCC-------CEEECCCCCHHHHHHHHHHcCCCEeeEE--EC-CEEEEEEEHHHhc
Confidence            45789999875       8899999999999999999999999999  65 9999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=1e-05  Score=55.64  Aligned_cols=55  Identities=33%  Similarity=0.477  Sum_probs=49.5

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .++.++|...       +.++.+++++.++++.|...+.+.+||+  +++|+++|+++..|+++
T Consensus        58 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTRG-------VVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccCC-------ccEECCCCCHHHHHHHHHHcCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            3599999876       8899999999999999999999999999  77799999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=5.4e-06  Score=58.52  Aligned_cols=59  Identities=22%  Similarity=0.337  Sum_probs=46.9

Q ss_pred             ccccHhHHhhhcCCCCCCCceEe----CCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWC----TTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v----~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~  117 (205)
                      ...+++++|.+...     .+.+    .+++++.++++.|.+++.+.+||+  |++ |+++|+|+.+|+++
T Consensus        62 ~~~~v~~im~~~~~-----~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv--d~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKED-----LKALDLEELENASVGDVVETLKASGRQHALVV--DREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhh-----hccccHHHhccCcHHHHHHHHHHCCCceEEEE--ECCCCEEEEEEeHHHHhh
Confidence            45679999986410     1223    368899999999999999999999  665 79999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=7.5e-06  Score=57.05  Aligned_cols=56  Identities=32%  Similarity=0.499  Sum_probs=50.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|...       +..+.+++++.++++.|.+.+.+.+||+  ++ |+++|+++..|+++
T Consensus        65 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTRP-------VITIEPDTSVSDVASLMLENNIGGLPVV--DD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccCC-------ceEECCCCcHHHHHHHHHHcCCCcccEE--EC-CEEEEEEEHHHhhc
Confidence            456899999775       8899999999999999999999999999  66 89999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.11  E-value=1e-05  Score=55.52  Aligned_cols=53  Identities=25%  Similarity=0.384  Sum_probs=47.0

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      ..+.++|.+        +..+.+++++.++++.|.+++.+.+||+  +++|+++|+|+..|++
T Consensus        57 ~~~~~~~~~--------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~  109 (111)
T cd04590          57 LDLRDLLRP--------PLFVPESTPLDDLLEEMRKERSHMAIVV--DEYGGTAGLVTLEDIL  109 (111)
T ss_pred             CCHHHHhcC--------CeecCCCCcHHHHHHHHHhcCCcEEEEE--ECCCCEEEEeEHHHhh
Confidence            457777653        7889999999999999999999999999  7889999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.11  E-value=1.3e-05  Score=54.84  Aligned_cols=54  Identities=33%  Similarity=0.505  Sum_probs=48.8

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      .++.++|...       +.++.+++++.++++.|.+++...+||+  +++|+++|+|+..+++
T Consensus        55 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~v~~~di~  108 (110)
T cd04605          55 KSVEDIMTRN-------VITATPDEPIDVAARKMERHNISALPVV--DAENRVIGIITSEDIS  108 (110)
T ss_pred             cCHHHhcCCC-------CeEECCCCcHHHHHHHHHHhCCCEEeEE--CCCCcEEEEEEHHHhh
Confidence            3588888765       8899999999999999999999999999  8889999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=9.3e-06  Score=55.73  Aligned_cols=54  Identities=22%  Similarity=0.506  Sum_probs=48.6

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      ..++.++|.+.       +.++.+++++.++++.|.+++...+||+  ++ |+++|+|+..|++
T Consensus        56 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~di~  109 (111)
T cd04626          56 EKKVFNIVSQD-------VFYVNEEDTIDEALDIMREKQIGRLPVV--DD-NKLIGVVRTKDIL  109 (111)
T ss_pred             cCcHHHHhcCC-------cEEEcCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEhHHhc
Confidence            35788999875       8899999999999999999999999999  66 8999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=1e-05  Score=57.48  Aligned_cols=54  Identities=28%  Similarity=0.487  Sum_probs=48.8

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .++.++|.+.       ++.+.+++++.++.+.|.+.+.+.+||+  ++ |+++|+++..|+++
T Consensus        78 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~iGvit~~dl~~  131 (132)
T cd04636          78 KKVEEIMTKK-------VITVDEDTTIEDVARIMSKKNIKRLPVV--DD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CCHHHhccCC-------ceEECCCCcHHHHHHHHHHCCCCeeEEE--EC-CEEEEEEEHHHhhc
Confidence            3789999875       8899999999999999999999999999  66 99999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.10  E-value=9.1e-06  Score=55.82  Aligned_cols=56  Identities=25%  Similarity=0.356  Sum_probs=50.6

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC-CCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~-~~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+.       +.++.+++++.++++.|.+.+.+.+||+  ++ .++++|+++..|++.
T Consensus        57 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTKP-------PVVVYPEDSLEDALKKFEDSDYEQLPVV--DDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccCC-------CcEEcCCCCHHHHHHHHhhCCccEeeEE--eCCCCEEEEEEEhHHhhc
Confidence            37899999886       8999999999999999999999999999  66 789999999999753

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.08  E-value=1.1e-05  Score=66.39  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=52.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...+++++|.++       ++++.+++++.++++.|.+++...+||+  |++|+++|+|+..|+++
T Consensus       261 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGvIt~~di~~  317 (321)
T PRK11543        261 LTTPVNEAMTRG-------GTTLQAQSRAIDAKEILMKRKITAAPVV--DENGKLTGAINLQDFYQ  317 (321)
T ss_pred             cCCcHHHhcCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHh
Confidence            346799999986       8899999999999999999999999999  78889999999999875

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.08  E-value=1.4e-05  Score=55.77  Aligned_cols=55  Identities=27%  Similarity=0.380  Sum_probs=49.6

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .+++++|...       ++.+.+++++.++++.|.+++...+||+  +++++++|+++..++++
T Consensus        67 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~vv--~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTRD-------PITVSPDTPVDEASKLLLENSISCLPVV--DENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcCC-------CeeeCCCCcHHHHHHHHHHcCCCeEeEE--CCCCCEEEEEEHHHhhh
Confidence            4688888875       8999999999999999999999999999  78899999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.08  E-value=1.3e-05  Score=56.49  Aligned_cols=58  Identities=31%  Similarity=0.537  Sum_probs=49.3

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|..+       ++++.++.++.++++.|.+.+...+||++.+++|+++|+|+.+|+++
T Consensus        70 ~~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSP-------VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCC-------CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45788999875       89999999999999999999889999983124689999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.07  E-value=1.6e-05  Score=54.64  Aligned_cols=56  Identities=29%  Similarity=0.471  Sum_probs=50.1

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..++.++|.+.       ++.+.+++++.++++.|.+++...+||+  +++|+++|+++.+++++
T Consensus        56 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTRD-------LVTVDPDEPVAEAAKLMRKNNIRHHLVV--DKGGELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccCC-------CEEECCCCcHHHHHHHHHHcCccEEEEE--cCCCcEEEEEEHHHhcc
Confidence            45789999876       8899999999999999999889999999  77899999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.07  E-value=1.4e-05  Score=54.83  Aligned_cols=56  Identities=20%  Similarity=0.416  Sum_probs=48.9

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|.+.       +..+.+++++.++++.|.+++...+||+  +++ +++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMSTP-------LITIDPNASLNEAAKLMAKHGIKRLPVV--DDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCCC-------cEEECCCCCHHHHHHHHHHcCCCeeEEe--eCC-EEEEEEEhhhhhc
Confidence            346799999775       8899999999999999999999999999  554 8999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.07  E-value=1.5e-05  Score=54.61  Aligned_cols=56  Identities=27%  Similarity=0.429  Sum_probs=49.5

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|.+.       +..+++++++.++++.|.+++...+||+  ++ ++++|+|+..++++
T Consensus        55 ~~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATFP-------LITVDPDDFLFNALLLMTRHRIHRVVVR--EG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCCC-------cEEECCCCcHHHHHHHHHHhCccEEEEe--eC-CEEEEEEEhHHhhc
Confidence            346799999875       8899999999999999999999999999  54 89999999999763

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.06  E-value=9.3e-05  Score=64.57  Aligned_cols=62  Identities=16%  Similarity=0.238  Sum_probs=54.6

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ...+|.++|.+...     ++++.+++++.++++.|.+++...+||+  |++++++|+|+.+|+++...
T Consensus       161 ~~~~V~eIMt~~~~-----lvtv~~~~sL~eAl~~m~~~~~~~LPVV--D~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        161 RETKLSEVMTSDDD-----LVTAPAGIDLEEAEAVLKDSKKGKLPLV--NEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             cCCcHHHHhccCCC-----cEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHhh
Confidence            35679999987522     6799999999999999999999999999  88899999999999887654

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.06  E-value=1.9e-05  Score=54.03  Aligned_cols=55  Identities=29%  Similarity=0.546  Sum_probs=49.3

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .++.++|.+.       +.++.+++++.++++.|.+++.+.+||+  +++++++|+|+..|+++
T Consensus        56 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTRD-------PVTASPDETLRDALKRMAERDIGRLPVV--DDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccCC-------CeEECCCCCHHHHHHHHHhCCCCeeeEE--cCCCCEEEEEEHHHhhh
Confidence            3678888775       8999999999999999999999999999  77899999999999763

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=1.4e-05  Score=53.88  Aligned_cols=56  Identities=16%  Similarity=0.367  Sum_probs=47.8

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .+..+++...      .+.++.+++++.++++.|.+++.+.+||+  +++|+++|+|+.+++++
T Consensus        40 v~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~~~~~~~Giit~~di~~   95 (96)
T cd04614          40 ITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPII--NGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             EEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            4666666543      17889999999999999999999999999  77799999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.04  E-value=1.9e-05  Score=67.75  Aligned_cols=82  Identities=24%  Similarity=0.480  Sum_probs=68.3

Q ss_pred             EEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHH
Q 028667          107 AGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVR  184 (205)
Q Consensus       107 ~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~  184 (205)
                      -|.++...  +.++.+-....+.+++++|+|+.++..++.+.++.++.+.+.+++++++||+++  +.++|++..+|++.
T Consensus       186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~  263 (429)
T COG1253         186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR  263 (429)
T ss_pred             cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence            46776555  223333335568899999999888999999999999999999999999999994  78999999999999


Q ss_pred             HHHhhh
Q 028667          185 AVVSEH  190 (205)
Q Consensus       185 ~l~~~~  190 (205)
                      .+....
T Consensus       264 ~~~~~~  269 (429)
T COG1253         264 ALLDGQ  269 (429)
T ss_pred             HHhcCc
Confidence            987663

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.04  E-value=1.4e-05  Score=66.04  Aligned_cols=57  Identities=18%  Similarity=0.347  Sum_probs=51.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +...+|+++|.+.       +.++.+++++.++++.|.+++.+.+||+  + +++++|+|+..|+++
T Consensus       266 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~-~~~lvGiit~~dil~  322 (326)
T PRK10892        266 LRQASIADVMTPG-------GIRVRPGILAVDALNLMQSRHITSVLVA--D-GDHLLGVLHMHDLLR  322 (326)
T ss_pred             cccCCHHHhcCCC-------CEEECCCCCHHHHHHHHHHCCCcEEEEe--e-CCEEEEEEEhHHhHh
Confidence            3457899999986       8999999999999999999999999999  4 578999999999875

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.02  E-value=2.3e-05  Score=54.52  Aligned_cols=56  Identities=34%  Similarity=0.470  Sum_probs=49.9

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...++.++|.+.       +..+.+++++.++++.|.+.+...+||+  ++ |+++|+++.+++++
T Consensus        65 ~~~~v~~~~~~~-------~~~i~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTKD-------VITVHPLDTVEEAALLMREHRIGCLPVV--ED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhCC-------CeEECCCCcHHHHHHHHHHcCCCeEEEe--eC-CEEEEEEEHHHhhc
Confidence            456799999876       8899999999999999999999999999  55 89999999999763

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.02  E-value=1.6e-05  Score=56.10  Aligned_cols=45  Identities=24%  Similarity=0.413  Sum_probs=42.1

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +.++.+++++.++++.|.+++.+.+||+  +++++++|+|+..|+++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVV--DEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEE--CCCCCEEEEEEHHHHhc
Confidence            8899999999999999999999999999  77899999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.02  E-value=2.4e-05  Score=53.96  Aligned_cols=49  Identities=20%  Similarity=0.399  Sum_probs=44.7

Q ss_pred             ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +++++++++++.++++.|.+.+.+.+||+++ |+++|+++..|+++.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~   51 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG   51 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence            4788999999999999999999999999987 899999999999987753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.01  E-value=2.7e-05  Score=53.03  Aligned_cols=50  Identities=26%  Similarity=0.598  Sum_probs=45.2

Q ss_pred             ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhh
Q 028667          140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~  189 (205)
                      ++.++++++++.++.+.|.+.+.+++||+++|+++|+++..|+.+.+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~   51 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEG   51 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcc
Confidence            37889999999999999999999999999989999999999999986543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.99  E-value=2e-05  Score=53.61  Aligned_cols=54  Identities=19%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      .++.++|.+.       +.++.++.++.++++.|.+++...+||+  + +|+++|+++..|++.
T Consensus        50 ~~~~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~-~~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVRG-------IPYVRLTSTAEEAWEVMMKNKTRWCPVV--D-DGKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhcC-------CcEEcCCCCHHHHHHHHHHcCcceEEEE--E-CCEEEEEEEHHHhhc
Confidence            4578888765       8899999999999999999999999999  5 589999999999753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.96  E-value=5.1e-05  Score=63.99  Aligned_cols=84  Identities=11%  Similarity=0.179  Sum_probs=63.1

Q ss_pred             cCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee
Q 028667           90 HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID  169 (205)
Q Consensus        90 ~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~  169 (205)
                      ++...++|+  |.     |+++..+.... ...   .....+.+ +...  ..++++++++.+++..+.+++.+ +||++
T Consensus       298 ~~~~~~~~~--~~-----~~~~~~~~~~~-~~~---~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  362 (382)
T TIGR03415       298 RRDTWLFTI--DK-----QVRRRDAKLPV-QAW---AAEQEVES-LEAA--PTVINPDTLMRDVLAARHRTGGA-ILLVE  362 (382)
T ss_pred             cccceeEee--cc-----ceecccchHhH-hhc---ccccchhh-hccc--CcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence            677888999  54     88887774432 211   02234666 4443  78899999999999999988776 66778


Q ss_pred             CCeEEEEEeHHHHHHHHHh
Q 028667          170 DKGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       170 ~~~~vGiIt~~dil~~l~~  188 (205)
                      +|+++|+|++.++++.+.+
T Consensus       363 ~~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       363 NGRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             CCeEEEEEeHHHHHHHHhc
Confidence            8999999999999998753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.92  E-value=3.3e-05  Score=66.64  Aligned_cols=86  Identities=15%  Similarity=0.349  Sum_probs=64.5

Q ss_pred             CCCCceEEEEehHHHHHH--HHHcCC-----CCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-Ce
Q 028667          101 GEQKSVAGIITERDYLRK--IIVQGR-----SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KG  172 (205)
Q Consensus       101 d~~~~~~G~v~~~dll~~--~~~~~~-----~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~  172 (205)
                      |...++...+...+++..  +.....     .....+++++|.+.  +.++++++++.++++.|.+.+...+||+++ ++
T Consensus       300 d~g~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~--~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~  377 (454)
T TIGR01137       300 DSIRNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPA--PVTVHPTETVGDAIEILREYGFDQLPVVTEAGK  377 (454)
T ss_pred             CCCccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence            555667666555554432  111111     12356789999875  999999999999999999999999999987 89


Q ss_pred             EEEEEeHHHHHHHHHh
Q 028667          173 MIGMVSIGDVVRAVVS  188 (205)
Q Consensus       173 ~vGiIt~~dil~~l~~  188 (205)
                      ++|+|+..|+++.+..
T Consensus       378 ~~Givt~~dl~~~~~~  393 (454)
T TIGR01137       378 VLGSVTLRELLSALFA  393 (454)
T ss_pred             EEEEEEHHHHHHHHhc
Confidence            9999999999987654

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.91  E-value=3.2e-05  Score=53.65  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=48.1

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCC---eEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVG---ALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~---~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ...+++++|.+.       +..+.+++++.++++.|.+++..   ..||+  +++|+++|+|+..++++
T Consensus        59 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv--~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDPD-------PLIVEADTPLEEVSRLATGRDSQNLYDGFIV--TEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCCC-------cEEecCCCCHHHHHHHHHcCCcccccccEEE--eeCCeEEEEEEHHHHhc
Confidence            456899999876       88999999999999999887653   44688  67899999999999763

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.91  E-value=0.00013  Score=63.62  Aligned_cols=59  Identities=17%  Similarity=0.338  Sum_probs=52.6

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      ..+|+++|.+...     +++++++.++.++.++|.+++...+||+  |++++++|+||.+|+++.
T Consensus       158 ~~~V~diMt~~~~-----lvtv~~~~sl~eAl~lm~e~~i~~LPVV--d~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        158 STPVSEVMTPREK-----LVVGNTPISLEEANEVLRESRKGKLPIV--NDNGELVALVSRSDLKKN  216 (495)
T ss_pred             CCCHHHhhCCcCC-----ceEeCCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEehHhhhc
Confidence            4679999987211     8999999999999999999999999999  889999999999998864

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.85  E-value=4.6e-05  Score=52.11  Aligned_cols=49  Identities=18%  Similarity=0.304  Sum_probs=43.6

Q ss_pred             HhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        59 ~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +|.+.       +.++++++++.++.+.|.+++...+||+  + +|+++|+|+..|+++
T Consensus        56 ~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~pVv--~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDPS-------PFTVSPRTSLEKVHQLFRKLGLRHLLVV--D-EGRLVGIITRKDLLK  104 (105)
T ss_pred             hccCC-------CceECCCCcHHHHHHHHHHcCCCEEEEE--E-CCeEEEEEEhhhhhc
Confidence            66654       8899999999999999999999999999  3 688999999999764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.85  E-value=1.1e-05  Score=66.29  Aligned_cols=107  Identities=17%  Similarity=0.280  Sum_probs=79.7

Q ss_pred             HHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCC
Q 028667           84 VKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIR  163 (205)
Q Consensus        84 ~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~  163 (205)
                      ++-+.....+..++.. .+...+.|++..              .+.+|+|+|.+++++..++.+++.+++.+.+.+....
T Consensus       170 lR~~v~~~~~e~~~~~-~~rdmL~gvLDL--------------e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~Ht  234 (423)
T COG4536         170 LRTAVNESGSEGSVNK-IDRDMLLGVLDL--------------ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHT  234 (423)
T ss_pred             HHHHHHHhhccccccc-ccHHHHhccccc--------------ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCC
Confidence            3334333344555531 244555555544              3468999999998999999999999999999999999


Q ss_pred             EEEEeeC--CeEEEEEeHHHHHHHHHhhhhHHHHHHHhhhcCCC
Q 028667          164 HIPVIDD--KGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY  205 (205)
Q Consensus       164 ~~pVv~~--~~~vGiIt~~dil~~l~~~~~~~~~~l~~~i~~~y  205 (205)
                      ++||..+  +.++|++..+|+++++.+.-......+.....++|
T Consensus       235 Riplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epy  278 (423)
T COG4536         235 RIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPY  278 (423)
T ss_pred             ceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCe
Confidence            9999976  68999999999999999876544555555545444

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.84  E-value=4.4e-05  Score=67.84  Aligned_cols=59  Identities=17%  Similarity=0.385  Sum_probs=52.9

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      ..+++++|+++  +.++++++++.++.+.|.+++.+.+||+|+ ++++|+|+.+|+.+.+..
T Consensus       446 ~~~V~dim~~~--~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~  505 (574)
T PRK01862        446 TTQMRELIQPA--QTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLD  505 (574)
T ss_pred             hCcHHHHhcCC--CceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhc
Confidence            56899999885  889999999999999999999999999997 899999999999986543

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=7.8e-05  Score=53.91  Aligned_cols=55  Identities=27%  Similarity=0.448  Sum_probs=49.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      ...++.++|.+.       +.++.+++++.+++..|.+.+...+||+  ++ ++++|+++.+|++
T Consensus        87 ~~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~~-~~~~Gvvt~~dl~  141 (143)
T cd04634          87 GKMKVRDIMTKK-------VITISPDASIEDAAELMVRHKIKRLPVV--ED-GRLVGIVTRGDII  141 (143)
T ss_pred             hcCCHHHHcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhh
Confidence            346788899875       8999999999999999999999999999  55 8999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=9.4e-05  Score=50.01  Aligned_cols=53  Identities=26%  Similarity=0.484  Sum_probs=47.4

Q ss_pred             HhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        56 v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +.++|...       +..+.+++++.++.+.|.+.+...+||+  +++++++|+++..++++
T Consensus        60 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTRD-------VVTVSPDTSLEEAAELMLEHGIRRLPVV--DDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcCC-------ceecCCCcCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHhhc
Confidence            66778765       8889999999999999999999999999  78899999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.75  E-value=8.2e-05  Score=51.27  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=47.4

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHh-cCCCeEEEEecCCCC-ceEEEEehHHH
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-HNVGALVVVKPGEQK-SVAGIITERDY  115 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~-~~~~~~~Vv~~d~~~-~~~G~v~~~dl  115 (205)
                      ++.++|...       +.++.++.++.++.+.|.+ ++...+||+  ++++ +++|+++..|+
T Consensus        63 ~v~~v~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~lpVv--~~~~~~lvGivt~~di  116 (117)
T COG0517          63 PVKEVMTKP-------VVTVDPDTPLEEALELMVERHKIRRLPVV--DDDGGKLVGIITLSDI  116 (117)
T ss_pred             cHHHhccCC-------cEEECCCCCHHHHHHHHHHHcCcCeEEEE--ECCCCeEEEEEEHHHc
Confidence            589999975       8999999999999999999 799999999  6775 99999999985

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=0.00013  Score=49.51  Aligned_cols=54  Identities=26%  Similarity=0.374  Sum_probs=47.0

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ..+.++|...       +.++.+++++.+++..|.+++...+||+  ++ |+++|+++..++++
T Consensus        52 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTRD-------PPTVSPDDDVKEAAKLMVENNIRRVPVV--DD-GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcCC-------CceECCCCCHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhhc
Confidence            4678888765       7889999999999999999999999999  53 79999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.67  E-value=0.00013  Score=62.97  Aligned_cols=58  Identities=19%  Similarity=0.382  Sum_probs=52.8

Q ss_pred             cccHhHHhhh-cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           53 STTISDILKA-KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        53 ~~~v~d~m~~-~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ..++.++|.+ +       +++++++.++.++++.|.+++...+||+  |++|+++|+||.+|+++..
T Consensus       142 ~~~V~dvm~~~~-------~~~V~~~~sl~eal~~m~~~~~~~lpVV--De~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTREE-------VITVPEGIDLEEALKVLHEHRIEKLPVV--DKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCCCC-------CEEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEhHHhhhcc
Confidence            4679999984 4       8999999999999999999999999999  8999999999999988753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.66  E-value=0.00017  Score=58.96  Aligned_cols=61  Identities=25%  Similarity=0.328  Sum_probs=56.7

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ..+.++..+|.+.       |.++.+.+|+..+.+.|.=.++.-+||+  +++.+++|+||++|+++.+.
T Consensus       246 ~~~t~ieKVMtkn-------p~tv~~~tsVAsvaq~MiwE~iem~PVv--~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         246 KPSTTIEKVMTKN-------PITVRAKTSVASVAQMMIWEGIEMLPVV--DSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             CCCccHHHHhccC-------CeeecccchHHHHHHHHHhccceeeeEE--cCCceEEEEEEHHHHHHHHH
Confidence            4678899999987       9999999999999999999999999999  89999999999999998774

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.59  E-value=0.00019  Score=62.10  Aligned_cols=58  Identities=22%  Similarity=0.373  Sum_probs=53.9

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ...+|+++|+..       ++.++.++-+.+|.-.|.+++++++||+   ++|+++|+|+..||++..
T Consensus       212 ~~~~V~evmT~p-------~~svd~~~~~feAml~m~r~~I~hl~V~---e~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         212 KTQKVSEVMTSP-------VISVDRGDFLFEAMLMMLRNRIKHLPVT---EDGQPLGILTLTDILRLF  269 (610)
T ss_pred             cccchhhhhccC-------ceeecCcchHHHHHHHHHHhCCceeeee---cCCeeeEEeeHHHHHHhh
Confidence            578999999986       9999999999999999999999999999   789999999999998754

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.55  E-value=0.00022  Score=57.17  Aligned_cols=50  Identities=18%  Similarity=0.338  Sum_probs=45.9

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEe
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT  111 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~  111 (205)
                      ..+++++|.+.       ++++.+++++.+|++.|.+.+...+||+  +++|+++|+|+
T Consensus       219 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~GvI~  268 (268)
T TIGR00393       219 KSEVRDFMTLG-------PKTFKLDALLLEALEFLERRKITSLVVV--DDHNKVLGVLH  268 (268)
T ss_pred             cCcHHHhCCCC-------CeEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCeEEEEEC
Confidence            46799999876       8899999999999999999999999999  88899999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.39  E-value=0.00036  Score=59.83  Aligned_cols=59  Identities=22%  Similarity=0.317  Sum_probs=55.2

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      .+.+++++|.+.       ++.+.+++..+++++.+.+++.-.+|||  |++++++|+||..|++..+
T Consensus       194 ~~~~i~~im~~~-------~~~V~~~~dqeevA~~~~~ydl~a~PVV--d~~~~LiG~itiDDiidvi  252 (451)
T COG2239         194 PDELLKDLMEDD-------VVSVLADDDQEEVARLFEKYDLLAVPVV--DEDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             cHhHHHHHhccc-------ceeecccCCHHHHHHHHHHhCCeecceE--CCCCceeeeeeHHHHHHHH
Confidence            578899999997       8999999999999999999999999999  8999999999999988654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.31  E-value=0.00092  Score=56.14  Aligned_cols=56  Identities=16%  Similarity=0.315  Sum_probs=49.0

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      .+.+.+.+.       +.++.+++++.+++..+.+++.. +||+  |++|+++|+|+..+++..+.
T Consensus       303 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       303 GLQDVLIDD-------IYTVDAGTLLRETVRKVLKAGIK-VPVV--DEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             chhhhhccC-------CceECCCCcHHHHHHHHHhCCCC-EEEE--CCCCcEEEEEEHHHHHHHHH
Confidence            466666654       78899999999999999999888 9999  89999999999999888764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0011  Score=54.00  Aligned_cols=110  Identities=18%  Similarity=0.305  Sum_probs=79.7

Q ss_pred             cccHhHHhhhcCCCCCCCceE-eCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           53 STTISDILKAKGKGADGSWLW-CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~-v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      -.+.+++|.+. +     +.. -.+...-..+...+.......+.++  +..++++|+++..+....             
T Consensus       273 VltA~~IM~~~-~-----~~~~~~~~~~~~~al~~~~~~~~~~~~~~--~~~~~~~g~v~~~~~~~~-------------  331 (386)
T COG4175         273 VLTAKDIMRRP-D-----LLIRKTPGDGPRVALKLLRDEGREYGYAV--DRGNKFVGVVSIDSLVKA-------------  331 (386)
T ss_pred             eeeHHHhhccc-c-----cccccccccccchhhhhhhhccchhhHHH--hccCceeeEEeccchhcc-------------
Confidence            35778888852 1     222 2222333457777777777788888  777789999998885431             


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                        .+.+  ++.+++.++++.+.+......+.+ +||+|+ ++++|+|++..++.++..
T Consensus       332 --~~~~--~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 --ALID--DVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             --cccc--cccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHhc
Confidence              3344  388999999999999888887765 557776 999999999999998864

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=97.15  E-value=7.7e-05  Score=57.82  Aligned_cols=97  Identities=14%  Similarity=0.297  Sum_probs=73.6

Q ss_pred             chHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHH
Q 028667           78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLM  157 (205)
Q Consensus        78 ~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~  157 (205)
                      .+..+.+.++++.+...+.=-  |.-..+-|++..              .+..++++|.|+....++..+.++.+++..+
T Consensus        32 knr~eLl~liRdse~n~LiD~--dt~~mlEGvm~i--------------adl~vrDiMIPRSQM~~l~~~~~l~~~l~~i   95 (293)
T COG4535          32 KNREELLELIRDSEQNELIDA--DTLDMLEGVMDI--------------ADLRVRDIMIPRSQMITLKRNQTLDECLDVI   95 (293)
T ss_pred             cCHHHHHHHHHHhhhccccCh--hHHHHHHHHHHH--------------HHhhHhhhcccHHHheeccccCCHHHHHHHH
Confidence            466788888887655443322  222222222222              3457899999987899999999999999999


Q ss_pred             HhCCCCEEEEeeC--CeEEEEEeHHHHHHHHHhhh
Q 028667          158 TDNRIRHIPVIDD--KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       158 ~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~~~~  190 (205)
                      .++..++.||+.+  +.+.|++-.+|++..++...
T Consensus        96 iesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~  130 (293)
T COG4535          96 IESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA  130 (293)
T ss_pred             HHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc
Confidence            9999999999976  68999999999999987553

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.10  E-value=0.0026  Score=56.96  Aligned_cols=62  Identities=13%  Similarity=0.220  Sum_probs=54.1

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ...+.|+++|.++       +.++..+.|.+|..+.+.....+.+|+|++.++.-++|.|.++.|...+
T Consensus       585 ~h~v~VE~iMV~d-------v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  585 VHTVKVEHIMVTD-------VKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             eeEEEeeeecccc-------ceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            4678999999998       9999999999999999998779999999765667889999999976544

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.99  E-value=0.0033  Score=53.46  Aligned_cols=59  Identities=20%  Similarity=0.247  Sum_probs=49.1

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG  123 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~  123 (205)
                      .+.+.+.+.       ..++.+++++.+++..+...... +||+  |++|+++|+|+..++++.+...+
T Consensus       338 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~~~~~~~~~~~~~~~  396 (400)
T PRK10070        338 GLDAALIDA-------PLAVDAQTPLSELLSHVGQAPCA-VPVV--DEDQQYVGIISKGMLLRALDREG  396 (400)
T ss_pred             chhhhhccC-------CceeCCCCCHHHHHHHHHhCCCc-EEEE--CCCCcEEEEEEHHHHHHHHHhcC
Confidence            455566554       78999999999999999987666 9999  89999999999999988775443

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.70  E-value=0.016  Score=51.06  Aligned_cols=55  Identities=20%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +...-+|++.       |+++.+++++..+..+|++-+.+++.|+  +...+.+|++|++|+.+
T Consensus       690 vDl~p~~n~s-------PytV~~~mSl~k~~~lFR~lGLRhLlVv--~~~~~~~gilTR~D~~~  744 (762)
T KOG0474|consen  690 VDLHPFMNPS-------PYTVPETMSLAKAFILFRQLGLRHLLVV--PKTNRVVGILTRKDLAR  744 (762)
T ss_pred             cccccccCCC-------CcccCcccchHHHHHHHHHhcceeEEEe--cCCCceeEEEehhhhhh
Confidence            4455667776       8999999999999999999999999999  77788899999999874

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.54  E-value=0.09  Score=44.32  Aligned_cols=57  Identities=18%  Similarity=0.289  Sum_probs=51.1

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      ....+.++|.+.       +++.+.+.++.++.+++.+++-..+||+  +++|.++.++++.||.+
T Consensus       169 ~~~~~~~vmt~~-------~~~~~~gi~l~~~neiL~~~kkGkl~iv--~~~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  169 NSLLVSDVMTKN-------PVTGAQGITLKEANEILKKIKKGKLPVV--DDKGELVAMLSRTDLMK  225 (503)
T ss_pred             ccchhhhhcccc-------cccccccccHHHHHHHHHhhhcCCccee--ccCCceeeeeehhhhhh
Confidence            346678888886       7888999999999999999999999999  89999999999999765

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=95.08  E-value=0.029  Score=49.04  Aligned_cols=130  Identities=14%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHH-HHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVY-DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      +....++++|.+-.+     +..++.+..+. +......+++++.+||.+. +....+|..-...++... .........
T Consensus       201 l~ek~~~evmtpi~~-----~f~l~~n~~l~~~~~~~i~~~g~sripv~~~-~~~~~i~~~L~~~~~~~~-~~~~~~~~~  273 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIED-----VFALDANTKLDRETVGEIVKHGYSRIPVYEQ-EPKNKIGGLLVMNLLRLL-QVEVPLEPL  273 (498)
T ss_pred             HHHHHHHHhccchhh-----heeeccccccchHHHhhHhhcCcceeeeccC-cccchhhHHHHhhhhhhh-ccccccccc
Confidence            578899999998654     77788888887 5555666899999999952 333334443333333332 211133456


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                      ++...+...  ..-++.++++.+.++.|.....+.+.|.+...-+|+++..++ ....++.
T Consensus       274 ~v~~~~~~~--l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l~~~-~~~~~ev  331 (498)
T KOG2118|consen  274 PVSESALLR--LPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTLEDL-EEVVKEV  331 (498)
T ss_pred             cchhhhccc--cccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEeccch-hhhccee
Confidence            777887774  899999999999999999988888877776778999999988 5544443

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.44  E-value=0.12  Score=43.86  Aligned_cols=46  Identities=13%  Similarity=0.247  Sum_probs=39.0

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ..++++++++.+++..+.+... -++|+  |+ |+++|+|+..+++..+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       335 PTVINPDTLMRDVLAARHRTGG-AILLV--EN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             CcccCCCCcHHHHHHHHhcCCC-CeEEe--eC-CeEEEEEeHHHHHHHHh
Confidence            7789999999999998887654 47888  65 99999999999987653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.14  E-value=0.22  Score=44.24  Aligned_cols=57  Identities=23%  Similarity=0.301  Sum_probs=50.7

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      +....+++|...       +.++...++..-+.+++++-+.+.+.|.   .+|+++|+||.+|+++.
T Consensus       637 ~~~~lk~il~~t-------p~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  637 SRLDLKDILDMT-------PFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCcCceeeccCC-------cccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHh
Confidence            556788888876       8899999999999999999999999996   79999999999998864

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.54  E-value=0.5  Score=37.83  Aligned_cols=84  Identities=14%  Similarity=0.146  Sum_probs=53.1

Q ss_pred             CCCceEEEEehHHHH--------HHHHHcC----CCCCcCccccccccCC--ceEEEcCCCcHHHHHHHHHhCCCCEEEE
Q 028667          102 EQKSVAGIITERDYL--------RKIIVQG----RSSKSTKVGDIMTEEN--KLITVSPDTKVLRAMQLMTDNRIRHIPV  167 (205)
Q Consensus       102 ~~~~~~G~v~~~dll--------~~~~~~~----~~~~~~~v~~im~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV  167 (205)
                      ++|+++=+=+..+++        ..+...+    .......+.+.|....  .--.+.......+++.-+...+...+||
T Consensus       210 ~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~V  289 (309)
T COG1125         210 DAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPV  289 (309)
T ss_pred             cCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEE
Confidence            467777777755554        3333222    1123345566665531  0112233345566777788889999999


Q ss_pred             eeC-CeEEEEEeHHHHHHH
Q 028667          168 IDD-KGMIGMVSIGDVVRA  185 (205)
Q Consensus       168 v~~-~~~vGiIt~~dil~~  185 (205)
                      +|+ |+++|.|++.+++..
T Consensus       290 vd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         290 VDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ECCCCcEeeEEEHHHHhhh
Confidence            998 999999999999864

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=89.78  E-value=0.76  Score=36.86  Aligned_cols=62  Identities=19%  Similarity=0.167  Sum_probs=44.6

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +...++.+.|.+.... +  --.+.....-.+++..+...+...+||+  |++|+++|.++..+++.
T Consensus       246 l~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ls~~~~~~~~~~~Vv--d~~g~~~G~vt~~~l~~  307 (309)
T COG1125         246 LSLVSVADAVRRGEPA-D--GEPLLEGFVDRDALSDFLARGRSVLPVV--DEDGRPLGTVTRADLLD  307 (309)
T ss_pred             cchhhHHHhhcccccc-c--CCccccchhhHHHHHHHHhcCCceeEEE--CCCCcEeeEEEHHHHhh
Confidence            4667788888874210 0  1123334555567777888889999999  99999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=88.40  E-value=1.4  Score=36.51  Aligned_cols=47  Identities=21%  Similarity=0.307  Sum_probs=39.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      +..+.+++++.+.+....+.. ..++|+  |++++++|+++...++..+.
T Consensus       337 ~~~v~~d~~~~~~~~~~~~~~-~p~aVv--de~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         337 VLTVDADTPLSEILARIRQAP-CPVAVV--DEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             ccccCccchHHHHHHHHhcCC-CceeEE--cCCCcEEEEecHHHHHHHHh
Confidence            678889999998887777654 567889  89999999999999887654

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=86.21  E-value=1.6  Score=39.96  Aligned_cols=61  Identities=16%  Similarity=0.280  Sum_probs=53.5

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHHHHHhhh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~~l~~~~  190 (205)
                      ...++++|.++  +..+..+++..+.-+.+....+..+|+|++   --++|.|.++.+...+..+.
T Consensus       587 ~v~VE~iMV~d--v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i  650 (931)
T KOG0476|consen  587 TVKVEHIMVTD--VKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI  650 (931)
T ss_pred             EEEeeeecccc--ceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence            35689999985  999999999999999998887999999986   25999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		7e-29
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		2e-18
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		9e-14
2ef7_A	133	Crystal Structure Of St2348, A Hypothetical Protein		9e-11
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		2e-10
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		1e-08
3tsb_A	511	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		4e-08
1xkf_A	133	Crystal Structure Of Hypoxic Response Protein I (Hr		2e-07
3usb_A	511	Crystal Structure Of Bacillus Anthracis Inosine Mon		3e-06
1me7_A	503	Inosine Monophosphate Dehydrogenase (Impdh) From Tr		6e-06
1me8_A	503	Inosine Monophosphate Dehydrogenase (Impdh) From Tr		6e-06
1y5h_A	133	Crystal Structure Of Truncated Se-Met Hypoxic Respo		1e-05
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		1e-04
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		1e-04
2yvy_A	278	Crystal Structure Of Magnesium Transporter Mgte Cyt		2e-04
1pbj_A	125	Cbs Domain Protein Length = 125		2e-04
2yzi_A	138	Crystal Structure Of Uncharacterized Conserved Prot		2e-04
2yvx_A	473	Crystal Structure Of Magnesium Transporter Mgte Len		2e-04
1zfj_A	491	Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.		5e-04
3k2v_A	149	Structure Of The Cbs Pair Of A Putative D-Arabinose		6e-04
2qh1_A	198	Structure Of Ta289, A Cbs-Rubredoxin-Like Protein,		8e-04
1pvm_A	184	Crystal Structure Of A Conserved Cbs Domain Protein		8e-04

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 105/155 (67%), Gaps = 8/155 (5%)
Query: 50  GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
           G  STT++ ILKAK     G  ++  T +D VYDA+K M +  +GAL+VV   +   +AG
Sbjct: 3   GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVI 168
           I+TERDY RK+++Q RSSK+T+V +IMT   K+  V P       M LMT++R+RH+PV+
Sbjct: 58  IVTERDYARKVVLQERSSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRMRHLPVL 115
Query: 169 DDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQG 203
           D   +IG++SIGD+V++V+++ +  +++L  +I G
Sbjct: 116 DGGKLIGLISIGDLVKSVIADQQFTISQLEHYIHG 150

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 87/137 (63%), Gaps = 9/137 (6%)
Query: 55  TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
           T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K    + + GI+TERD
Sbjct: 7   TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERD 59
Query: 115 YLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
           + RK  +  +  K T+V +IMT +   + ++   +    M L+T+ R+RH+PV+DD  +I
Sbjct: 60  FSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNE--DCMALITEMRVRHLPVLDDGKVI 117
Query: 175 GMVSIGDVVRAVVSEHR 191
           G++SIGD+V+  +S+H+
Sbjct: 118 GLLSIGDLVKDAISQHQ 134

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
           +T + D+L  KG+      +    D ++ +A  ++  H +GA+VV        V GI TE
Sbjct: 23  ATFVKDLLDRKGR----DVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA--DGVVLGIFTE 76
Query: 113 RDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
           RD ++ +  QG +S    V   MT+   ++    ++   + M++MT  R RH+PV ++  
Sbjct: 77  RDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGR 134
Query: 173 MIGMVSIGDVVRAVVSEHREELNRLNAFIQG 203
           + G++SIGDVV+A + E   E   + A+I G
Sbjct: 135 LAGIISIGDVVKARIGEIEAEAEHIKAYIAG 165

>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With Cbs Domains From Sulfolobus Tokodaii Strain7 Length = 133

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 14/119 (11%)
Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVV---KPGEQKSVAGIITERDYLRKIIVQGRSSKS 128
           +  T D  + D  K  T+ N+G+++VV   KP       GIITERD + K I +G+S + 
Sbjct: 15  ISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKP------VGIITERDIV-KAIGKGKSLE- 66
Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAV 186
           TK  +  T    LIT+  D+ +  A+ L     IRH+PV+DDKG + G++SI D+ RA+
Sbjct: 67  TKAEEFXTA--SLITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 15/131 (11%)
Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           +  T D TV +A+  M ++ +G L VV   E+  + G++T RD      V+   + S K+
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRD------VRFEKNLSKKI 157
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRAVVSEH 190
            D+MT   KLI   PD  + +A +++  +RI  +P++  D  ++G+++I D++  +  EH
Sbjct: 158 KDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI--EH 215
Query: 191 ----REELNRL 197
               R+E  RL
Sbjct: 216 PNAARDEKGRL 226

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 14/113 (12%)
Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           +    D+TV  A+  M +H +  L VV   E + V GIIT++D      +  R  K  K 
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVV---EDEKVVGIITKKD------IAAREGKLVK- 153
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVV 183
            ++MT+E  +ITV    +V  A+++M +NRI  +PV+D++G ++G++++ D+V
Sbjct: 154 -ELMTKE--VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV 203

>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Bacillus Anthracis Str. Ames Length = 511

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
            + T +  VYDA   M ++ +  + VV   +++ + GIIT RD +R I        S K+
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFI-----QDYSIKI 177
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAV 186
            D+MT+E +LIT    T +  A +++   +I  +P++D+ G++ G+++I D+ + +
Sbjct: 178 SDVMTKE-QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232

>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi) With Two Coordinated Zinc Ions Length = 133

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 51  FESTTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           F  TT  DI+ A         + C  + +T+  A + M +H++GAL +   G+   + G+
Sbjct: 5   FTMTTARDIMNA--------GVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGM 54
Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169
           +T+RD + K +  G    +   G++    + +  V  +  +   + +M ++++R +PVI 
Sbjct: 55  LTDRDIVIKGLAAGLDPNTATAGELA--RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS 112
Query: 170 DKGMIGMVSIGDVVR 184
           +  ++G+V+  D+ R
Sbjct: 113 EHRLVGIVTEADIAR 127

>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine Monophosphate Dehydrogenase In The Complex With Imp Length = 511

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
            + T +  VYDA     ++ +  + VV   +++ + GIIT RD  R I        S K+
Sbjct: 124 FFLTPEHQVYDAEHLXGKYRISGVPVVNNLDERKLVGIITNRD-XRFI-----QDYSIKI 177
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAV 186
            D+ T+E +LIT    T +  A +++   +I  +P++D+ G++ G+++I D+ + +
Sbjct: 178 SDVXTKE-QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232

>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp And Moa Bound Length = 503

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 77  DDTVYD--AVKSMTQHNVGALVVVKPGEQKSVA-GIITERDYLRKIIVQGRSSKSTKVGD 133
           D T  D  A+   T HN   + V   G    V  G++T+RDY   +     +   TKV D
Sbjct: 113 DQTFADVLAISQRTTHNT--VAVTDDGTPHGVLLGLVTQRDYPIDL-----TQTETKVSD 165
Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
           +MT  +KL+T   DTK+  A +++ + ++  +P+IDD
Sbjct: 166 MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD 202

>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp Bound Length = 503

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 77  DDTVYD--AVKSMTQHNVGALVVVKPGEQKSVA-GIITERDYLRKIIVQGRSSKSTKVGD 133
           D T  D  A+   T HN   + V   G    V  G++T+RDY   +     +   TKV D
Sbjct: 113 DQTFADVLAISQRTTHNT--VAVTDDGTPHGVLLGLVTQRDYPIDL-----TQTETKVSD 165
Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
           +MT  +KL+T   DTK+  A +++ + ++  +P+IDD
Sbjct: 166 MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD 202

>pdb|1Y5H|A Chain A, Crystal Structure Of Truncated Se-Met Hypoxic Response Protein I (Hrpi) Length = 133

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 51  FESTTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           F  TT  DI  A         + C  + +T+  A +   +H++GAL +   G+   + G 
Sbjct: 5   FTXTTARDIXNA--------GVTCVGEHETLTAAAQYXREHDIGALPIC--GDDDRLHGX 54
Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169
           +T+RD + K +  G    +   G++    + +  V  +  +   + +  ++++R +PVI 
Sbjct: 55  LTDRDIVIKGLAAGLDPNTATAGELA--RDSIYYVDANASIQEXLNVXEEHQVRRVPVIS 112
Query: 170 DKGMIGMVSIGDVVR 184
           +  ++G+V+  D+ R
Sbjct: 113 EHRLVGIVTEADIAR 127

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVV 183
           VG+ MT++  L  V P T V  A++L+ +NRI   PVID D  ++G+VS  D++
Sbjct: 7   VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVV 183
           VG+ MT++  L  V P T V  A++L+ +NRI   PVID D  ++G+VS  D++
Sbjct: 7   VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60

>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic Domain, Mg2+ Bound Form Length = 278

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
           LR +IV   +   T+V +IM    K++ V  DT      +LM D     +PV+D++G ++
Sbjct: 189 LRDLIV---ADPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV 243
Query: 175 GMVSIGDVVRAVVSEHREELNRLNA 199
           G+V++ DV+  + +E  E++++L A
Sbjct: 244 GIVTVDDVLDVLEAEATEDIHKLGA 268

>pdb|1PBJ|A Chain A, Cbs Domain Protein Length = 125

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 82  DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKL 141
           D +++  ++  G+ VVVK G +    GI+T  D L + I +G      KV ++   E  L
Sbjct: 22  DVLRNYVENAKGSSVVVKEGVR---VGIVTTWDVL-EAIAEGDDLAEVKVWEVX--ERDL 75
Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           +T+SP   +  A +    N +  + V +D  +IG++S  D++RA
Sbjct: 76  VTISPRATIKEAAEKXVKNVVWRLLVEEDDEIIGVISATDILRA 119

>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 138

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130
            L      +V +A +   + +VG+LVV+   +  +V G  T+ D +R++IV G       
Sbjct: 17  LLGVKPSTSVQEASRLXXEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGLPY---- 70
Query: 131 VGDIMTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
             DI  E      LIT + +T +   ++   ++RI+HI + ++  ++G+ ++ D++ A
Sbjct: 71  --DIPVERIXTRNLITANVNTPLGEVLRKXAEHRIKHILIEEEGKIVGIFTLSDLLEA 126

>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Length = 473

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
           LR +IV   +   T+V +IM    K++ V  DT      +LM D     +PV+D++G ++
Sbjct: 209 LRDLIV---ADPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV 263
Query: 175 GMVSIGDVVRAVVSEHREELNRLNA 199
           G+V++ DV+  + +E  E++++L A
Sbjct: 264 GIVTVDDVLDVLEAEATEDIHKLGA 288

>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205) From Streptococcus Pyogenes Length = 491

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 10/129 (7%)
Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
            + T +  V +A +   ++ +  + +V+    + + GIIT RD  R I     S  +  +
Sbjct: 101 FFLTPEHKVSEAEELXQRYRISGVPIVETLANRKLVGIITNRD-XRFI-----SDYNAPI 154
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAVVSEH 190
            +  T E+ L+T +  T +  A +++ ++RI  +P++D+ G + G+++I D+ + +   H
Sbjct: 155 SEHXTSEH-LVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPH 213
Query: 191 --REELNRL 197
             ++E  RL
Sbjct: 214 AAKDEFGRL 222

>pdb|3K2V|A Chain A, Structure Of The Cbs Pair Of A Putative D-Arabinose 5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp. Pneumoniae. Length = 149

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           T+ DA+  +T+ N+G   +    +  ++ GI T+ D LR++   G   +   + D+ T  
Sbjct: 48  TLRDALLEITRKNLGXTAICD--DDXNIIGIFTDGD-LRRVFDTGVDXRDASIADVXTRG 104
Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
              I + P T  + A+ L     I  + V D   ++G+V   D++RA
Sbjct: 105 G--IRIRPGTLAVDALNLXQSRHITCVLVADGDHLLGVVHXHDLLRA 149

>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its Fe+2-Bound State Length = 198

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           TV+DAVK M ++++  LVV    +  +  G+++ER  +++ I + +      +  +M + 
Sbjct: 41  TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP 98
Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
             +  V  D  V      +++N +    V+DD G ++G+V++ D+ R +
Sbjct: 99  --IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 145

>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289 Of Unknown Function From Thermoplasma Acidophilum Length = 184

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
           TV+DAVK M ++++  LVV    +  +  G+++ER  +++ I   R+ K  +V   +   
Sbjct: 27  TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFI--PRNKKPDEVPIRLVMR 82
Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
             +  V  D  V      +++N +    V+DD G ++G+V++ D+ R +
Sbjct: 83  KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-51
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-51
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-46
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-41
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	8e-14
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	9e-38
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-13
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	5e-37
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-36
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-13
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-36
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-13
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-04
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	8e-35
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-14
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	5e-06
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-34
1pbj_A	125	Hypothetical protein; structural genomics, domain,	6e-14
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-28
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-16
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-27
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-11
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-26
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	5e-14
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	5e-26
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	4e-14
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-25
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	6e-13
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-04
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-24
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-14
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-24
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	7e-10
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-23
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-22
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-21
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-10
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	8e-06
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-21
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-20
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-19
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-21
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-16
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	8e-12
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-08
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	8e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-21
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-17
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-17
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-21
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-12
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-20
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-08
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-20
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-13
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	7e-20
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-14
1vr9_A	213	CBS domain protein/ACT domain protein; structural	3e-19
1vr9_A	213	CBS domain protein/ACT domain protein; structural	9e-10
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	5e-19
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	5e-13
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	6e-19
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-07
3fio_A	70	A cystathionine beta-synthase domain protein fused	6e-19
3fio_A	70	A cystathionine beta-synthase domain protein fused	2e-09
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	9e-19
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	4e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-18
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-13
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-09
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	9e-17
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-16
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	3e-16
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	4e-16
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	2e-15
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	3e-15
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	3e-15
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-04
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	5e-15
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	1e-13
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-10
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	5e-05
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-08
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	1e-04
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	7e-07
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	2e-06
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	8e-06
2oux_A	286	Magnesium transporter; 10001B, structural genomics	1e-05

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  162 bits (412), Expect = 2e-51
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 35  SSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA 94
                  S          +T + D+L  KG+      +    D ++ +A  ++  H +GA
Sbjct: 5   HHHHHHSSGRENLYFQGMATFVKDLLDRKGRDV----VTVGPDVSIGEAAGTLHAHKIGA 60

Query: 95  LVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAM 154
           +VV        V GI TERD ++ +  QG +S    V   MT+   ++    ++   + M
Sbjct: 61  VVVT--DADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTDQLM 116

Query: 155 QLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQG 203
           ++MT  R RH+PV ++  + G++SIGDVV+A + E   E   + A+I G
Sbjct: 117 EIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHIKAYIAG 165

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  161 bits (410), Expect = 3e-51
 Identities = 66/154 (42%), Positives = 104/154 (67%), Gaps = 6/154 (3%)

Query: 50  GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           G  STT++ ILKAK   +  +    T +D VYDA+K M +  +GAL+VV   +   +AGI
Sbjct: 3   GSMSTTVAQILKAK-PDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD---IAGI 58

Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169
           +TERDY RK+++Q RSSK+T+V +IMT   K+  V P       M LMT++R+RH+PV+D
Sbjct: 59  VTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD 116

Query: 170 DKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQG 203
              +IG++SIGD+V++V+++ +  +++L  +I G
Sbjct: 117 GGKLIGLISIGDLVKSVIADQQFTISQLEHYIHG 150

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  149 bits (378), Expect = 1e-46
 Identities = 49/138 (35%), Positives = 86/138 (62%), Gaps = 9/138 (6%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K  +   + GI+TER
Sbjct: 6   KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEK---LVGILTER 58

Query: 114 DYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM 173
           D+ RK  +  +  K T+V +IMT   ++  V  +      M L+T+ R+RH+PV+DD  +
Sbjct: 59  DFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKV 116

Query: 174 IGMVSIGDVVRAVVSEHR 191
           IG++SIGD+V+  +S+H+
Sbjct: 117 IGLLSIGDLVKDAISQHQ 134

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score =  135 bits (343), Expect = 3e-41
 Identities = 24/117 (20%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
                +T+  A + M +H++GAL +    ++  + G++T+RD + K +  G    +   G
Sbjct: 20  CVGEHETLTAAAQYMREHDIGALPICGDDDR--LHGMLTDRDIVIKGLAAGLDPNTATAG 77

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
           ++  +   +  V  +  +   + +M ++++R +PVI +  ++G+V+  D+ R +   
Sbjct: 78  ELARDS--IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPEH 132

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 64.5 bits (158), Expect = 8e-14
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
           T   DIM     +  V     +  A Q M ++ I  +P+  D   + GM++  D+V   +
Sbjct: 8   TTARDIMNAG--VTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL 65

Query: 188 SEHR 191
           +   
Sbjct: 66  AAGL 69

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  126 bits (320), Expect = 9e-38
 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           L      +V +A + M + +VG+LVV+   +  +V G  T+ D +R++IV G       V
Sbjct: 18  LGVKPSTSVQEASRLMMEFDVGSLVVIN--DDGNVVGFFTKSDIIRRVIVPGLPY-DIPV 74

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
             IMT    LIT + +T +   ++ M ++RI+HI + ++  ++G+ ++ D++ A    
Sbjct: 75  ERIMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRR 130

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
              +   MT+  KL+ V P T V  A +LM +  +  + VI+D G ++G  +  D++R V
Sbjct: 6   KAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRV 63

Query: 187 VSEHR 191
           +    
Sbjct: 64  IVPGL 68

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score =  125 bits (315), Expect = 5e-37
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 13/141 (9%)

Query: 50  GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           G  +   S++LK          +      T+ +    + ++ VG  V+      K    +
Sbjct: 1   GAMAIRTSELLKRPP-------VSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV 53

Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169
           ++ERD LR +    R         I       ITV     V  A + M  + IRH+ V++
Sbjct: 54  VSERDILRAVA--QRLDLDGPAMPIAN---SPITVLDTDPVHVAAEKMRRHNIRHVVVVN 108

Query: 170 DKG-MIGMVSIGDVVRAVVSE 189
             G ++G++SI D+       
Sbjct: 109 KNGELVGVLSIRDLCFERAIL 129

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score =  123 bits (312), Expect = 2e-36
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + +VYDA+ +M   +VG L VV       + G+++ +D L +  +  +   S  V  
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKD-LLRASIGQQELTSVPVHI 85

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG----MIGMVSIGDVVRAVVSE 189
           IMT    +     +  V+   + + + +I  +PVI D      +IG V+  ++ + +VS 
Sbjct: 86  IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSL 145

Query: 190 HREEL 194
              E+
Sbjct: 146 SENEI 150

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169
           +T +   + +       K  +V D  +     + +  +  V  A+  M    +  + V+D
Sbjct: 1   MTGKTGTQLL---ADKLKKLQVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVD 54

Query: 170 DKG-MIGMVSIGDVVRAVVSEH 190
               ++G++S  D++RA + + 
Sbjct: 55  RDAVLVGVLSRKDLLRASIGQQ 76

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  124 bits (314), Expect = 2e-36
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + TV+DAVK M ++++  LVV    +  +  G+++ER  +++ I + +      +  
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKD--DNGNDVGLLSERSIIKRFIPRNKKPDEVPIRL 79

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHRE 192
           +M +   +  V  D  V      +++N +    V+DD G ++G+V++ D+ R +      
Sbjct: 80  VMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASIT 137

Query: 193 ELNRLNA 199
           ++   + 
Sbjct: 138 DILLSHR 144

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
           +V  IM       TV+ +T V  A+++M +N +  + V DD G  +G++S   +++  + 
Sbjct: 10  RVEKIMNSN--FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP 67

Query: 189 EHREELNR 196
            +++    
Sbjct: 68  RNKKPDEV 75

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
              +D  V D    ++++ +    VV   +   V GI+T  D  R +
Sbjct: 87  KVKSDYDVKDVAAYLSENGLERCAVVD--DPGRVVGIVTLTDLSRYL 131

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score =  118 bits (299), Expect = 8e-35
 Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 8/121 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D  + D  K MT+ N+G+++VV   +     GIITERD + K I +G+S + TK  +
Sbjct: 17  VTKDAKLNDIAKVMTEKNIGSVIVVDGNK---PVGIITERD-IVKAIGKGKSLE-TKAEE 71

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHRE 192
            MT    LIT+  D+ +  A+ LM    IRH+PV+DDKG + G++SI D+ RA+      
Sbjct: 72  FMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFET 129

Query: 193 E 193
            
Sbjct: 130 M 130

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 65.3 bits (160), Expect = 4e-14
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
           +   V + M  +  +I+V+ D K+    ++MT+  I  + V+D    +G+++  D+V+A+
Sbjct: 2   EEEIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAI 59

Query: 187 VSE 189
              
Sbjct: 60  GKG 62

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 27/117 (23%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST------------TISDILKAKGKGADGSW-- 71
           M   V+S ++   ++     M E    S             T  DI+KA GKG       
Sbjct: 10  MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKA 69

Query: 72  --------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
                   +    D  +  A+  M Q N+  L VV   ++ ++ GII+ RD  R I 
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVD--DKGNLKGIISIRDITRAID 124

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score =  118 bits (297), Expect = 2e-34
 Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                ++ D +++  ++  G+ VVVK G      GI+T  D + + I +G      KV +
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV---RVGIVTTWD-VLEAIAEGDDLAEVKVWE 69

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
           +M     L+T+SP   +  A + M  N +  + V +D  +IG++S  D++RA +++
Sbjct: 70  VMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK 123

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 64.8 bits (159), Expect = 6e-14
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
           +V D+M  +  + T+     +   ++   +N      V+ +   +G+V+  DV+ A+   
Sbjct: 2   RVEDVMVTD--VDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG 59

Query: 190 H 190
            
Sbjct: 60  D 60

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score =  102 bits (257), Expect = 6e-28
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 31/147 (21%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS----- 128
                +V DA++ + +  V  L V+   +  ++ G++++ D L    + GRS        
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLALDSISGRSQNDTNLFP 76

Query: 129 ---------------------TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPV 167
                                  VGD+MT     + V   T +  A +L+ + + R +PV
Sbjct: 77  DVDSTWKTFNELQKLISKTYGKVVGDLMTPS--PLVVRDSTNLEDAARLLLETKFRRLPV 134

Query: 168 IDDKG-MIGMVSIGDVVRAVVSEHREE 193
           +D  G +IG+++ G+VVRA +   R  
Sbjct: 135 VDADGKLIGILTRGNVVRAALQIKRNA 161

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 71.7 bits (176), Expect = 5e-16
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
            VGD MT    L  V P T V  A++L+ + ++  +PVIDD   ++G+VS  D++     
Sbjct: 5   TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSI 64

Query: 189 EHRE 192
             R 
Sbjct: 65  SGRS 68

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 8   FLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGA 67
            +S  +++    +      +  L P V S +++ +  +          + D++       
Sbjct: 52  VVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSP--- 108

Query: 68  DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK 127
               L       + DA + + +     L VV       + GI+T  + +R  +   R++ 
Sbjct: 109 ----LVVRDSTNLEDAARLLLETKFRRLPVVD--ADGKLIGILTRGNVVRAALQIKRNAD 162

Query: 128 STKVGDIMTE 137
           S         
Sbjct: 163 SISGRSQNDT 172

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  100 bits (252), Expect = 1e-27
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C     V D ++ +TQ  V ++ ++   E   +  +    D L  I     +  S  VG+
Sbjct: 24  CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGE 81

Query: 134 IMTEEN----KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
            +   +     + T + + K+   M  +   R+    V+DD G ++G++++ D+++ ++
Sbjct: 82  ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
            +  I  +   + +    T V+  +Q++T  R+  +P+ID+ G +I +    DV+  +  
Sbjct: 12  DLNIITQDN--MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 69

Query: 189 EHREELNR 196
               +L+ 
Sbjct: 70  GIYNDLSL 77

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 98.9 bits (247), Expect = 1e-26
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 20/134 (14%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------- 125
              D  + + V  + +  V   V V       + G+I     L+                
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELI 86

Query: 126 ------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVS 178
                   +    +IM +    + V  DT +  A++LM DN I+ +PV+D+KG ++G ++
Sbjct: 87  RSSMKRLIAKNASEIMLDP---VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLN 143

Query: 179 IGDVVRAVVSEHRE 192
             +++ A+     +
Sbjct: 144 SLEILLALWKGREK 157

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 65.8 bits (161), Expect = 5e-14
 Identities = 7/69 (10%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           K   V  +++ +     V  DT +   +  + ++ +     +     ++GM+ +  +++ 
Sbjct: 14  KVKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV 71

Query: 186 VVSEHREEL 194
                   +
Sbjct: 72  SGFHFFGFI 80

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 96.5 bits (241), Expect = 5e-26
 Identities = 30/120 (25%), Positives = 66/120 (55%), Gaps = 11/120 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
               + V +A + M ++ + +L V+   ++  V GI+T  D +   +++ + +  T +GD
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVID--DENKVIGIVTTTD-IGYNLIRDKYTLETTIGD 77

Query: 134 IMTEENKLITVSPDTKVLRAMQLMT-----DNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
           +MT++  +IT+  D  +L A++ M      +  I  +PV+D    ++G++S GD++R + 
Sbjct: 78  VMTKD--VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS 135

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 65.7 bits (161), Expect = 4e-14
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           K+ KV D+MT+   +IT      V+ A + M   +I  +PVIDD+  +IG+V+  D+   
Sbjct: 6   KNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYN 63

Query: 186 VVSEHRE 192
           ++ +   
Sbjct: 64  LIRDKYT 70

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 96.6 bits (241), Expect = 1e-25
 Identities = 22/122 (18%), Positives = 53/122 (43%), Gaps = 11/122 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR-------KIIVQGRSS 126
                T+ DA   M   ++  + +V     K + GI+++RD L        +       +
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVD--ANKKLLGIVSQRDLLAAQESSLQRSAQGDSLA 75

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
             T + ++M  +  + +V+P   +  +   M  ++I  +PV+    ++G+++  D V   
Sbjct: 76  FETPLFEVMHTD--VTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA 133

Query: 187 VS 188
           ++
Sbjct: 134 IN 135

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
           KV D+MT      T+     +  A  LM    IRH+P++D    ++G+VS  D++ A  S
Sbjct: 6   KVEDMMTRH--PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES 63

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
              + ++   M +H +G L VV       + GIIT+ D++   I      + ++  ++  
Sbjct: 94  QAGLKESAIYMQKHKIGCLPVVAKDV---LVGIITDSDFVTIAINLLELQEESEPDELDE 150

Query: 137 EE 138
           E+
Sbjct: 151 EQ 152

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 92.2 bits (230), Expect = 2e-24
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + ++ +A K + +HN+  L +V   E   + GIIT  D  + +     +     + +IMT
Sbjct: 17  NISIMEAAKILIKHNINHLPIVD--EHGKLVGIITSWDIAKAL-----AQNKKTIEEIMT 69

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
               +IT   D  V      M+   I  +PV+DD   ++G+V+  D+ R  
Sbjct: 70  R--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF 118

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 64.5 bits (158), Expect = 8e-14
 Identities = 15/64 (23%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
           T V DI+++    IT   +  ++ A +++  + I H+P++D+ G ++G+++  D+ +A+ 
Sbjct: 1   TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA 58

Query: 188 SEHR 191
              +
Sbjct: 59  QNKK 62

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 93.3 bits (232), Expect = 2e-23
 Identities = 23/113 (20%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           +  + +A+++    NVG   +V   ++  +  +ITERD +R ++ +    ++  + D +T
Sbjct: 100 NADIDEAIETFLTKNVGGAPIVN--DENQLISLITERDVIRALLDKID--ENEVIDDYIT 155

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
            +  +I  +P  ++    + M  N  R +PV+ +  ++G+++  D ++ + S+
Sbjct: 156 RD--VIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSD 206

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 42/194 (21%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST-------------TISDILKAKGKGADGSW- 71
           M   V++      +  A                         T  D+++A     D +  
Sbjct: 90  MEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV 149

Query: 72  ---------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI--- 119
                    +  T  + + D  ++M ++    L VV  G    + GIIT  D+++ +   
Sbjct: 150 IDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGR---LVGIITSTDFIKLLGSD 206

Query: 120 -------IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
                      R   + ++ +IM  +  +IT     K+ +  ++M  N I  +PV+D+  
Sbjct: 207 WAFNHMQTGNVREITNVRMEEIMKRD--VITAKEGDKLKKIAEIMVTNDIGALPVVDENL 264

Query: 173 -MIGMVSIGDVVRA 185
            + G+++  DV++ 
Sbjct: 265 RIKGIITEKDVLKY 278

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 88.7 bits (220), Expect = 1e-21
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 17/133 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------- 125
                T+  A+ +M ++    L VV  G  K V GIIT  D +  +    +         
Sbjct: 17  VYPTTTIRKALMTMNENKYRRLPVVNAGNNK-VVGIITSMDIVDFMGGGSKYNLIREKHE 75

Query: 126 -----SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSI 179
                + +  V +IM E   +IT+  +  +  A++      +   P+++D+  +I +++ 
Sbjct: 76  RNFLAAINEPVREIMEEN--VITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITE 133

Query: 180 GDVVRAVVSEHRE 192
            DV+RA++ +  E
Sbjct: 134 RDVIRALLDKIDE 146

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID--DKGMIGMVSIGDVVRAVV 187
            +     +  K++TV P T + +A+  M +N+ R +PV++  +  ++G+++  D+V  + 
Sbjct: 5   VMKIAQNK--KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMG 62

Query: 188 SEHREELNR 196
              +  L R
Sbjct: 63  GGSKYNLIR 71

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
               D +    + M  +++GAL VV   E   + GIITE+D L+  
Sbjct: 236 AKEGDKLKKIAEIMVTNDIGALPVVD--ENLRIKGIITEKDVLKYF 279

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 88.3 bits (219), Expect = 2e-21
 Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
               + A+  M   N G+L VV   ++    GI+TER++L          +   V   M+
Sbjct: 109 TSDEFTAINIMVTRNFGSLPVVDINDK--PVGIVTEREFLLLYK---DLDEIFPVKVFMS 163

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
              K+ T+  + ++ +A++LM     R +PVIDD   ++G+V++ + ++ +
Sbjct: 164 T--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQL 212

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 86.4 bits (214), Expect = 1e-20
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI-----IVQGRSSKS 128
              +  +  AVK M +     L V+   +   V GI+T  + ++++      +       
Sbjct: 169 IYKEVRLDQAVKLMLRRGFRRLPVID--DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYG 226

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
             V D+M     L+T+     V RA   M   RI  + +++    + G+++  D++ A+ 
Sbjct: 227 KVVKDVMVTN--LVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH 284

Query: 188 SEHREE 193
                E
Sbjct: 285 HILVME 290

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 83.7 bits (207), Expect = 1e-19
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 16/129 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK------ 127
            + +D +  A K + +  +G ++V      + + G++T RD L  +    + S       
Sbjct: 33  LSKEDRLGSAFKKINEGGIGRIIVAN----EKIEGLLTTRDLLSTVESYCKDSCSQGDLY 88

Query: 128 ---STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVV 183
              +T + D MT     +TV   +    A+ +M       +PV+D     +G+V+  + +
Sbjct: 89  HISTTPIIDYMTPN--PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL 146

Query: 184 RAVVSEHRE 192
                    
Sbjct: 147 LLYKDLDEI 155

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 11/69 (15%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
            +  +M +      +S + ++  A + + +  I  I V ++K + G+++  D++  V S 
Sbjct: 21  NIETLMIKN--PPILSKEDRLGSAFKKINEGGIGRIIVANEK-IEGLLTTRDLLSTVESY 77

Query: 190 HREELNRLN 198
            ++  ++ +
Sbjct: 78  CKDSCSQGD 86

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 88.5 bits (219), Expect = 2e-21
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C     V D ++ +TQ  V ++ ++   E   +  +    D L  I     +  S  VG+
Sbjct: 203 CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGE 260

Query: 134 IMTEENK----LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
            +   +     + T + + K+   M  +   R+    V+DD G ++G++++ D+++ ++
Sbjct: 261 ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 319

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 9/128 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKS---VAGIITERDYLR----KIIVQGRSSKST 129
              +++A   M +   G + ++   E+     V  ++T+   L+                
Sbjct: 130 SRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPI 189

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
              +I+T++N + +    T V+  +Q++T  R+  +P+ID+ G +I +    DV+  +  
Sbjct: 190 GDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 248

Query: 189 EHREELNR 196
               +L+ 
Sbjct: 249 GIYNDLSL 256

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 61.9 bits (150), Expect = 8e-12
 Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 28  PMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM 87
           P          E   +         S T  D+L    +      +   T   V  ++  +
Sbjct: 4   PTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYR-----LIVLDTSLLVKKSLNVL 58

Query: 88  TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEN-------- 139
            Q+++ +  +      +  AG++T  D++  I     +    ++ D +  +         
Sbjct: 59  LQNSIVSAPLWDSKTSR-FAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERAL 117

Query: 140 -----KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVV 183
                   ++ P   +  A   M ++R   IP+ID         +  V+
Sbjct: 118 GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVL 166

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG--MIGMVSIGDVVR 184
            S    D++    +LI +     V +++ ++  N I   P+ D K     G+++  D + 
Sbjct: 28  NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFIN 87

Query: 185 AVV 187
            + 
Sbjct: 88  VIQ 90

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 44.2 bits (104), Expect = 8e-06
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
           S ++ + L  +    +G    CT +D +   + ++ +  V    VV   +   + G++T 
Sbjct: 255 SLSVGEALMRRSDDFEGV-YTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTL 311

Query: 113 RDYLRKIIV 121
            D L+ I++
Sbjct: 312 SDILKYILL 320

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 87.7 bits (217), Expect = 5e-21
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
             T   VY A+    QH V AL VV   E+  V  I ++ D +     +  ++    V  
Sbjct: 206 VRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTK 263

Query: 134 IMTEEN----KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM-IGMVSIGDVVRAVVS 188
            +   +     ++       +   +  + +  +  + V+D+  +  G+VS+ D+++A+V 
Sbjct: 264 ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL 323

Query: 189 EHREE 193
              E+
Sbjct: 324 TGGEK 328

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 76.9 bits (189), Expect = 5e-17
 Identities = 25/157 (15%), Positives = 61/157 (38%), Gaps = 22/157 (14%)

Query: 51  FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
            +S    D++    K      +   T   V  A  ++  + V A  +    +Q    G++
Sbjct: 32  MKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS-FVGML 85

Query: 111 TERDYLRKIIVQGRSSKSTKVGDIMTE-------------ENKLITVSPDTKVLRAMQLM 157
           T  D++  I+ +   S   ++ ++                   L+ +SP+  +  A+  +
Sbjct: 86  TITDFIN-ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSL 144

Query: 158 TDNRIRHIPVIDDKGM--IGMVSIGDVVRAVVSEHRE 192
             N+I  +PVID +    + +++   +++ +     E
Sbjct: 145 IRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 181

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 76.5 bits (188), Expect = 7e-17
 Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 12/162 (7%)

Query: 43  SARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE 102
           SA ++ +  E   I    +   + +    +  + + +++DAV S+ ++ +  L V+ P  
Sbjct: 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 159

Query: 103 QKSVAGIITERDYLRKIIVQGRSSKST--------KVGDIMTEENKLITVSPDTKVLRAM 154
                 I+T +  L+ + +                ++         +  V   T V  A+
Sbjct: 160 GN-TLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN--IAMVRTTTPVYVAL 216

Query: 155 QLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHREELN 195
            +   +R+  +PV+D+KG ++ + S  DV+     +    L+
Sbjct: 217 GIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLD 258

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK 127
           C   +T+   +  + +  V  LVVV   E   V GI++  D L+ +++ G   K
Sbjct: 278 CYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVLTGGEKK 329

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 81.7 bits (202), Expect = 2e-20
 Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T   +  DA + +         V+         G++     L     +G  +   K+G+ 
Sbjct: 19  TLGGSTADAARRLAASGCACAPVLDGER---YLGMVHLSRLLEG--RKGWPTVKEKLGEE 73

Query: 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           + E   + +  P  ++   +  +   +   +P+ D+ G   G+VS   ++  +
Sbjct: 74  LLET--VRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184
           S+ S     +   +      +       A + +  +     PV+D +  +GMV +  ++ 
Sbjct: 1   SNASVTFSYLAETD--YPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE 58

Query: 185 AVVSEHREEL 194
                   + 
Sbjct: 59  GRKGWPTVKE 68

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 81.7 bits (202), Expect = 4e-20
 Identities = 18/128 (14%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  + +    A+ V+       + G+I+    L  I+   R      +  
Sbjct: 30  VQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLISTAMILDGILGLERIEFERLEEM 87

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
           KV  +M     +  +  +    +A+++  D+    I  +++ G   G+++   +++  ++
Sbjct: 88  KVEQVMK--QDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKL-LN 142

Query: 189 EHREELNR 196
           +   + NR
Sbjct: 143 KKVRQHNR 150

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           +   V D+M    K+  V     +  A+ ++  +    IPV+D    + G++S   ++  
Sbjct: 13  QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDG 72

Query: 186 VVSEHREELNRLNA 199
           ++   R E  RL  
Sbjct: 73  ILGLERIEFERLEE 86

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 81.3 bits (201), Expect = 7e-20
 Identities = 19/125 (15%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  +T+    A+ V+       + G+I+    +  I+   R      ++ 
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDAILGLERIEFERLETM 83

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
           KV ++M     +  +  D  +++A+ L+ ++    + V +D G   G+ +  +V++ +  
Sbjct: 84  KVEEVMNRN--IPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK 139

Query: 189 EHREE 193
           +    
Sbjct: 140 QLHRP 144

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
            V   +   +K+  V P   +  A+ ++T      IPV+D    + G++S+  ++ A++ 
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG 71

Query: 189 EHREELNRLNA 199
             R E  RL  
Sbjct: 72  LERIEFERLET 82

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 80.9 bits (200), Expect = 3e-19
 Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 12/118 (10%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                TV + +  M Q+     +V     +    G++ + D L            + V +
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKD--REGHFRGVVNKEDLLDL-------DLDSSVFN 76

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEH 190
            ++  +    V  +  +  A+ L  +++  ++PV+D++  + G VS+ D + A++   
Sbjct: 77  KVSLPD--FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           KV   +T       V     V   +  M   +     V D +G   G+V+  D++  
Sbjct: 14  KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL 68

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 79.0 bits (195), Expect = 5e-19
 Identities = 16/118 (13%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  +T+    A+ V+ P  +  + G+I     +  I    R         
Sbjct: 29  VQVGNNLEHALLVLTKTGYTAIPVLDPSYR--LHGLIGTNMIMNSIFGLERIEFEKLDQI 86

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
            V ++M     +  +  +  +++   ++ +N    + V +D+    G+ +   V++ +
Sbjct: 87  TVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
            VG  M E +K+  V     +  A+ ++T      IPV+D    + G++    ++ ++  
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 74

Query: 189 EHREELNRLNA 199
             R E  +L+ 
Sbjct: 75  LERIEFEKLDQ 85

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 82.2 bits (203), Expect = 6e-19
 Identities = 19/121 (15%), Positives = 54/121 (44%), Gaps = 7/121 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + +  VYD +K + + N+ A+ +V    + ++  +    D +  I     S+    VG+
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVN--SEGTLLNVYESVDVMHLIQDGDYSNLDLSVGE 255

Query: 134 IMTEENK----LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
            + +       + T     ++      +  +R+  + V+D+   + G++S+ D++  ++ 
Sbjct: 256 ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY 315

Query: 189 E 189
           +
Sbjct: 316 D 316

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 20/133 (15%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLR----KIIVQGR 124
           ++     ++ DA  +M++     + ++    +   + +  ++T+   L+           
Sbjct: 120 IYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAM 179

Query: 125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVV 183
                    I T  N L T S +TKV   ++++ +  I  +P+++ +G ++ +    DV+
Sbjct: 180 LRVPLNQMTIGTWSN-LATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVM 238

Query: 184 RAVVSEHREELNR 196
             +       L+ 
Sbjct: 239 HLIQDGDYSNLDL 251

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID--DKGMIGMVSIGDVVR 184
           +S    D++    +LI       V  ++ L+T N I   P+ D       G++++ D V 
Sbjct: 20  RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVN 79

Query: 185 AVVSEHREELN 195
            +   ++    
Sbjct: 80  VIKYYYQSSSF 90

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 77.9 bits (193), Expect = 9e-19
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                T+ DA+  +T+ N+G   +    +  ++ GI T+ D LR++   G   +   + D
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICD--DDMNIIGIFTDGD-LRRVFDTGVDMRDASIAD 99

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
           +MT     I + P T  + A+ LM    I  + V D   ++G+V + D++RA
Sbjct: 100 VMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLLRA 149

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
            +V DIM   +++  V     +  A+  +T   +    + DD   +IG+ + GD+ R   
Sbjct: 28  LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVF- 86

Query: 188 SEHREELNRLNA 199
            +   ++   + 
Sbjct: 87  -DTGVDMRDASI 97

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             T   A++   ++ V +  VV   ++  + GII+ +  L             ++  ++ 
Sbjct: 17  PATRNYALELFKKYKVRSFPVVN--KEGKLVGIISVKRILVNPD-------EEQLAMLVK 67

Query: 137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
               +  V  +  + +A +LM +   R + V+D KG  +G++++GD++R   
Sbjct: 68  R--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF 117

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 34/145 (23%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII------------- 120
                 +  A+K++   N  AL VV   E   V GI+ E D LR                
Sbjct: 139 VWEGTPLKAALKALLLSNSMALPVVD-SEGNLV-GIVDETDLLRDSEIVRIMKSTELAAS 196

Query: 121 ----------------VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRH 164
                                  +  V +IMT +  +I  +P   V      M    I  
Sbjct: 197 SEEEWILESHPTLLFEKFELQLPNKPVAEIMTRD--VIVATPHMTVHEVALKMAKYSIEQ 254

Query: 165 IPVIDDKG-MIGMVSIGDVVRAVVS 188
           +PVI  +G +IG++   D+++ +V 
Sbjct: 255 LPVIRGEGDLIGLIRDFDLLKVLVK 279

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
           +V  IMT+    +T++       A++L    ++R  PV++ +G ++G++S+  ++     
Sbjct: 2   RVKTIMTQN--PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDE 59

Query: 189 EHREEL 194
           E    L
Sbjct: 60  EQLAML 65

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 76.8 bits (190), Expect = 9e-17
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T +  VYDA   M ++ +  + VV   +++ + GIIT RD +R I        S K+ D
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFI-----QDYSIKISD 179

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           +MT+E  LIT    T +  A +++   +I  +P++D+ G + G+++I D+ + +
Sbjct: 180 VMTKEQ-LITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-------RS 125
               D  + + VK +T  +V    +V+  E + + GI+     ++ +  +        + 
Sbjct: 25  TLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQ 84

Query: 126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
                +      E   +T+  +T + +A  L     ++ + V      +G VS  ++ +A
Sbjct: 85  CLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKA 144

Query: 186 V 186
           +
Sbjct: 145 I 145

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 72.2 bits (177), Expect = 3e-16
 Identities = 20/145 (13%), Positives = 51/145 (35%), Gaps = 25/145 (17%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI---------------- 119
              TV D    +++       VV   E + + G +  RD +  I                
Sbjct: 32  DSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII 91

Query: 120 -------IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
                   +   +  + K+ +I+       TV+  T +   + +     +R   V  +  
Sbjct: 92  YFTEHSPPLPPYTPPTLKLRNILDLS--PFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGR 149

Query: 173 MIGMVSIGDVVRAVVSEHREELNRL 197
           ++G+++  DV++ +     ++ + +
Sbjct: 150 LLGIITKKDVLKHIAQMANQDPDSI 174

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 74.8 bits (185), Expect = 4e-16
 Identities = 29/114 (25%), Positives = 64/114 (56%), Gaps = 8/114 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T +  V +A + M ++ +  + +V+    + + GIIT RD +R I     S  +  + +
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD-MRFI-----SDYNAPISE 156

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
            MT E+ L+T +  T +  A +++ ++RI  +P++D+ G + G+++I D+ + +
Sbjct: 157 HMTSEH-LVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 209

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGAL-VVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
              D T  D +    +     + V         + G++T+RD          +   TKV 
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD-YPI----DLTQTETKVS 164

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           D+MT  +KL+T   DTK+  A +++ + ++  +P+IDD   +  +V   D  R+ 
Sbjct: 165 DMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQ 219

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D TV +A+  M ++ +G L VV   E+  + G++T RD +R        + S K+ D
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRD-VRFE-----KNLSKKIKD 159

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           +MT   KLI   PD  + +A +++  +RI  +P++     ++G+++I D++  +
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 14/114 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D+TV  A+  M +H +  L VV+  +   V GIIT++D          + +   V +
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDEK---VVGIITKKDI--------AAREGKLVKE 154

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           +MT+E  +ITV    +V  A+++M +NRI  +PV+D++G ++G++++ D+V   
Sbjct: 155 LMTKE--VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK 206

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 25/36 (69%)

Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMV 177
           IT++PD  V  A+ LM  + I  +PV++D+ ++G++
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGII 139

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 71.7 bits (177), Expect = 5e-15
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + T+ D ++    H      VV   E   + GIIT RD +R +     +  +  V  
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVT--ENNELVGIITGRD-VRFV-----TDLTKSVAA 153

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           +MT + +L TV          + M   R+  I V++D+  + GM++  D  +A 
Sbjct: 154 VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 19/114 (16%), Positives = 53/114 (46%), Gaps = 6/114 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKVG 132
            +   TV D +++  +H    + + + G   S + GI+T RD +           +T + 
Sbjct: 121 LSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD-ID---FLAEKDHTTLLS 176

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           ++MT   +L+       +  A +++  ++   +P+++D   ++ +++  D+ + 
Sbjct: 177 EVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKN 230

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 46  MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
           ME   F     E       L           +   +D TV +A+  M +H V  L VV  
Sbjct: 365 MEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD- 423

Query: 101 GEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDN 160
            +  SV G++ +   + +I+      +S      + +  ++I ++    + +  +++  +
Sbjct: 424 QDDGSVLGVVGQETLITQIV-SMNRQQSDPAIKALNK--RVIRLNESEILGKLARVLEVD 480

Query: 161 RIRHIPVIDDKGMIGMVSIGDVV 183
                 +I  K   G V +  + 
Sbjct: 481 ---PSVLILGKNPAGKVELKALA 500

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 112 ERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDK 171
            R++   +   G    S  + + +      + +  D  V  A+ LM  +R+  +PV+D  
Sbjct: 367 ARNFKEPVNEHGHWWWSLAIAE-LELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD 425

Query: 172 G--MIGMVSIGDVVRAVVS 188
              ++G+V    ++  +VS
Sbjct: 426 DGSVLGVVGQETLITQIVS 444

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
             KV D+  ++  +  ++P+  +  A  +M D  ++ IPV D    ++GM+S  ++    
Sbjct: 6   KLKVEDLEMDK--IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATY 63

Query: 187 VSEHREELNR 196
           +      +  
Sbjct: 64  MDIWDSNILA 73

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 82  DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV--------QGRSSKSTKVGD 133
           +    + +  V  L+V   G       II         ++          R    +   D
Sbjct: 131 EIQAELIELKVSLLIVT--GGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVD 188

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
            +  ++ L+ VS D  V      M++ R  + PVID+   ++G ++   ++  
Sbjct: 189 YVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST 241

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
              I           +  +++E+     ++ +T +L A + +  +R   +PVIDD G +I
Sbjct: 106 RYDIFK---HEPHEPLISLLSED--SRALTANTTLLDAAEAIEHSREIELPVIDDAGELI 160

Query: 175 GMVSIGDVVRAVVSEHREELNRL 197
           G V++      V   +  +L   
Sbjct: 161 GRVTLRAATALVREHYEAQLMAT 183

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
           LR +IV   +   T+V +IM  +  ++ V  DT      +LM D     +PV+D++G ++
Sbjct: 209 LRDLIV---ADPRTRVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV 263

Query: 175 GMVSIGDVVRAVVSEHREELNRL 197
           G+V++ DV+  + +E  E++++L
Sbjct: 264 GIVTVDDVLDVLEAEATEDIHKL 286

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
           LR +IV   +   T+V +IM  +  ++ V  DT      +LM D     +PV+D++G ++
Sbjct: 189 LRDLIV---ADPRTRVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV 243

Query: 175 GMVSIGDVVRAVVSEHREELNRL 197
           G+V++ DV+  + +E  E++++L
Sbjct: 244 GIVTVDDVLDVLEAEATEDIHKL 266

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
           LR +IV   +   T + DI+ E   +I+V          Q + D     +PV D    ++
Sbjct: 191 LRDLIV---NDDDTLIADILNER--VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLL 245

Query: 175 GMVSIGDVVRAVVSEHREELNRL 197
           G+V++ D++  +  E   + + L
Sbjct: 246 GIVTVDDIIDVIDDEAASDYSGL 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.91
4esy_A	170	CBS domain containing membrane protein; structural	99.89
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.89
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.89
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.89
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.88
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.88
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.88
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.88
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.88
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.88
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.88
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.87
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.87
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.87
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.87
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.87
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.87
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.87
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.87
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.87
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.87
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.86
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.86
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.85
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.85
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.85
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.85
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.85
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.85
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.85
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.84
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.84
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.84
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.84
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.84
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.84
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.84
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.84
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.84
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.84
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.8
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.8
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.79
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.79
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.78
3ddj_A	296	CBS domain-containing protein; structural genomics	99.78
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.76
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.75
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.74
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.74
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.74
3ddj_A	296	CBS domain-containing protein; structural genomics	99.73
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.71
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.69
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.68
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.67
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.65
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.64
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.61
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.61
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.6
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.55
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.55
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.54
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.49
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.38
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.38
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.33
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.14
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.11
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.02
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.9
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.89
4esy_A	170	CBS domain containing membrane protein; structural	98.85
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.85
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.83
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.83
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.76
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.76
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.75
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.74
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.74
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.73
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.69
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.69
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.69
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.69
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.68
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.68
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.67
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.66
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.66
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.65
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.65
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.64
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.64
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.63
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.63
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.62
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.62
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.6
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.59
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.59
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.57
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.56
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.55
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.54
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.53
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.53
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.48
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.46
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.44
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.43
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.42
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.38
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.37
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.37
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.2
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.93
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.93
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.91
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.88
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.83
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.78
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.71
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.45

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.5e-23  Score=155.29  Aligned_cols=143  Identities=31%  Similarity=0.492  Sum_probs=117.5

Q ss_pred             cccccHhHHhhhc-CCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAK-GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~-~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      +..++|+++|.+. .+     ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+..........
T Consensus        21 l~~~~v~dim~~~~~~-----~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~   93 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRD-----VVTVGPDVSIGEAAGTLHAHKIGAVVVT--DADGVVLGIFTERDLVKAVAGQGAASLQQ   93 (165)
T ss_dssp             SSSCBHHHHHHHHCSC-----CCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHGGGGGTS
T ss_pred             hhhcCHHHHhccCCCC-----CeEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHhcCCccccC
Confidence            6789999999973 11     8999999999999999999999999999  88999999999999988776543234567


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhhhHHHHHHHhhhc
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQ  202 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~~~~~~~l~~~i~  202 (205)
                      ++.++|.+.  ++++++++++.+|++.|.+++.+++||+++|+++|+||..|+++.+.+...+....++.++.
T Consensus        94 ~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~~~~~~~~~~~~l~~~i~  164 (165)
T 3fhm_A           94 SVSVAMTKN--VVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHIKAYIA  164 (165)
T ss_dssp             BGGGTSBSS--CCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHTTCC-------------
T ss_pred             CHHHHhcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999974  89999999999999999999999999999999999999999999999888887777777664

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.89  E-value=2e-24  Score=160.88  Aligned_cols=130  Identities=28%  Similarity=0.454  Sum_probs=112.7

Q ss_pred             cccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC-----
Q 028667           49 HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-----  123 (205)
Q Consensus        49 ~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~-----  123 (205)
                      +.+.+++|+|+|.++       ++++.+++|+.+|++.|.+++++.+||+  |++|+++|+||.+|+++.+....     
T Consensus        13 ~~l~~~~V~diM~~~-------v~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~g~lvGiit~~Dll~~~~~~~~~~~~   83 (170)
T 4esy_A           13 RAIRQVPIRDILTSP-------VVTVREDDTLDAVAKTMLEHQIGCAPVV--DQNGHLVGIITESDFLRGSIPFWIYEAS   83 (170)
T ss_dssp             HHHHTSBGGGGCCSC-------CCCEETTSBHHHHHHHHHHTTCSEEEEE--CTTSCEEEEEEGGGGGGGTCCTTHHHHH
T ss_pred             HHHcCCCHHHhcCCC-------CcEECCcCcHHHHHHHHHHcCCeEEEEE--cCCccEEEEEEHHHHHHHHhhccccchh
Confidence            346789999999986       8999999999999999999999999999  89999999999999865321000     


Q ss_pred             ----------------CCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHH
Q 028667          124 ----------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       124 ----------------~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~  187 (205)
                                      ......+++++|++.  ++++++++++.+|++.|.+++++++||+++|+++|+||++||++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A           84 EILSRAIPAPEVEHLFETGRKLTASAVMTQP--VVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             HHHTTTSCHHHHHHHHHHHTTCBHHHHCBCC--SCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTTSC
T ss_pred             hhhhhccchhhHHhhhccccccchhhhcccC--cccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHHHH
Confidence                            011245799999985  99999999999999999999999999999999999999999999875


Q ss_pred             hh
Q 028667          188 SE  189 (205)
Q Consensus       188 ~~  189 (205)
                      .+
T Consensus       162 ~~  163 (170)
T 4esy_A          162 LE  163 (170)
T ss_dssp             CC
T ss_pred             hc
Confidence            44

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.89  E-value=2.9e-22  Score=145.63  Aligned_cols=125  Identities=19%  Similarity=0.387  Sum_probs=112.0

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      +...+|+++|.+..+     ++++++++++.+|++.|.+++++.+||+  +++ |+++|+|+.+|+++.+....    ..
T Consensus        20 l~~~~v~diM~~~~~-----~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~~~----~~   88 (148)
T 3lv9_A           20 FEEKKIREIMVPRTD-----MVCIYESDSEEKILAILKEEGVTRYPVC--RKNKDDILGFVHIRDLYNQKINEN----KI   88 (148)
T ss_dssp             GGTCBGGGTSEETTT-----CCCEETTCCHHHHHHHHHHSCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHHS----CC
T ss_pred             cCCCCHHHccccHHH-----eEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhcCC----Cc
Confidence            678999999998222     8999999999999999999999999999  777 89999999999887665432    56


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +++++| +  +++++++++++.+|++.|.+++.+.+||+|+ |+++|+||..|+++.+.+.
T Consensus        89 ~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           89 ELEEIL-R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             CGGGTC-B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred             cHHHhc-C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence            899999 4  3899999999999999999999999999997 9999999999999998764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.89  E-value=3e-23  Score=159.30  Aligned_cols=133  Identities=19%  Similarity=0.271  Sum_probs=113.9

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhc---CCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH---NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK  127 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~---~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~  127 (205)
                      |.+.+++++|.++       ++++++++|+.+|++.|.+.   +.+.+||+  |++|+++|+|+.+|++.       ...
T Consensus        51 ~~~~~v~~iM~~~-------~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~-------~~~  114 (205)
T 3kxr_A           51 YSENEIGRYTDHQ-------MLVLSDKATVAQAQRFFRRIELDCNDNLFIV--DEADKYLGTVRRYDIFK-------HEP  114 (205)
T ss_dssp             SCTTCGGGGCBCC-------CCEEETTCBHHHHHHHHHHCCCTTCCEEEEE--CTTCBEEEEEEHHHHTT-------SCT
T ss_pred             CCcchHHhhccCc-------eEEECCCCcHHHHHHHHHhhCccCeeEEEEE--cCCCeEEEEEEHHHHHh-------CCC
Confidence            7889999999986       99999999999999999986   78999999  88999999999999764       234


Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHhhh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNAFI  201 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~~i  201 (205)
                      ..+++++|.+.  ++++++++++.+|++.|.++++..+||+|+ |+++|+||..|+++.+.+...+...++.+.-
T Consensus       115 ~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~ed~~~~~g~~  187 (205)
T 3kxr_A          115 HEPLISLLSED--SRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEAQLMATAGMD  187 (205)
T ss_dssp             TSBGGGGCCSS--CCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC----------
T ss_pred             cchHHHHhcCC--CeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHHHHHHhcCCC
Confidence            67899999874  899999999999999999999999999997 9999999999999999999988888877653

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.89  E-value=3.9e-22  Score=148.79  Aligned_cols=129  Identities=16%  Similarity=0.291  Sum_probs=110.0

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      +...+|+++|.+..+     ++++++++++.+|++.|.+++++.+||+  +++ ++++|+|+.+|+++.+...    ...
T Consensus        39 l~~~~v~diM~~~~~-----~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~~----~~~  107 (172)
T 3lhh_A           39 LDERTISSLMVPRSD-----IVFLDLNLPLDANLRTVMQSPHSRFPVC--RNNVDDMVGIISAKQLLSESIAG----ERL  107 (172)
T ss_dssp             ----CTTTTSEEGGG-----CCCEETTSCHHHHHHHHHTCCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHTT----CCC
T ss_pred             cCCCCHHHhCccHHH-----eEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCeEEEEEEHHHHHHHHhhc----Ccc
Confidence            678999999995322     8899999999999999999999999999  776 8999999999988765432    256


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHH
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREE  193 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~  193 (205)
                      +++++| +  +++++++++++.+|++.|.+++.+.+||+|+ |+++|+||+.|+++.+.+...++
T Consensus       108 ~v~~im-~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~de  169 (172)
T 3lhh_A          108 ELVDLV-K--NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQE  169 (172)
T ss_dssp             CGGGGC-B--CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC--
T ss_pred             cHHHHh-c--CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCccc
Confidence            899999 5  3899999999999999999999999999997 99999999999999998776544

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.88  E-value=4.2e-22  Score=141.67  Aligned_cols=124  Identities=15%  Similarity=0.320  Sum_probs=108.7

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      .+.+|+++|.+..+     ++++++++++.+|++.|.+++++.+||+  +++ |+++|+|+.+|+++.+.     ....+
T Consensus         3 ~~~~v~diM~~~~~-----~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~-----~~~~~   70 (129)
T 3jtf_A            3 AERTVADIMVPRSR-----MDLLDISQPLPQLLATIIETAHSRFPVY--EDDRDNIIGILLAKDLLRYML-----EPALD   70 (129)
T ss_dssp             -CCBHHHHCEEGGG-----CCCEETTSCHHHHHHHHHHSCCSEEEEE--SSSTTCEEEEEEGGGGGGGGT-----CTTSC
T ss_pred             CCCCHHHhCccHHH-----eEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCcEEEEEEHHHHHhHhc-----cCCcC
Confidence            56899999995422     7899999999999999999999999999  665 89999999999876432     23568


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      ++++|++   +.++++++++.+|++.|.+++.+.+||+|+ |+++|+||+.|+++.+.+..
T Consensus        71 v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei  128 (129)
T 3jtf_A           71 IRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI  128 (129)
T ss_dssp             GGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred             HHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence            9999976   789999999999999999999999999997 99999999999999987653

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.88  E-value=2.6e-22  Score=142.92  Aligned_cols=125  Identities=14%  Similarity=0.305  Sum_probs=107.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      |.+.+|+++|.+...     ++++++++++.+|++.|.+++++.+||+  +++ |+++|+|+.+|+++.+...   ....
T Consensus         3 l~~~~v~~iM~~~~~-----v~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~~~---~~~~   72 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPV-----VFRVDATMTINEFLDKHKDTPFSRPLVY--SEQKDNIIGFVHRLELFKMQQSG---SGQK   72 (130)
T ss_dssp             ----CCTTTSCCBCC-----CCEEETTSBHHHHHHHTTTCSCSCCEEE--SSSTTCEEEECCHHHHHHHHHTT---TTTS
T ss_pred             cCcCCHhhCCCcHHH-----EEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCcEEEEEEHHHHHHHHhcC---CCcC
Confidence            577899999997532     6789999999999999999999999999  666 8999999999988765432   2367


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +++++|++   +.++++++++.+|++.|.+++.+.+||+|+ |+++|+||..|+++.+.+
T Consensus        73 ~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           73 QLGAVMRP---IQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             BHHHHSEE---CCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             CHHHHhcC---CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence            89999965   889999999999999999999999999987 999999999999998864

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.88  E-value=4.4e-22  Score=145.60  Aligned_cols=131  Identities=21%  Similarity=0.361  Sum_probs=111.2

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEE-ecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV-KPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv-~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      +...+|+++|.+..+     ++++++++++.+|++.|.+++++.+||+ + +++|+++|+|+.+|+++.+....    ..
T Consensus        17 l~~~~v~~iM~~~~~-----~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d-~~~~~lvGivt~~dl~~~~~~~~----~~   86 (153)
T 3oco_A           17 MNDKVASDVMVDRTS-----MSVVDVDETIADALLLYLEEQYSRFPVTAD-NDKDKIIGYAYNYDIVRQARIDD----KA   86 (153)
T ss_dssp             HHHCBHHHHSEEGGG-----CCCEETTSBHHHHHHHHHHHCCSEEEEEET-TEEEEEEEEEEHHHHHHHHHHHT----TS
T ss_pred             cCCCEeeeEecchhh-----eEEEcCCCCHHHHHHHHHhCCCCEEEEEEC-CCCCcEEEEEEHHHHHhHHhcCC----CC
Confidence            678999999997211     8999999999999999999999999999 4 34589999999999887665432    57


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHH
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREEL  194 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~  194 (205)
                      +++++| +  +++++++++++.+|++.|.+++.+.+||+++ |+++|+||+.|+++.+.+...++.
T Consensus        87 ~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~de~  149 (153)
T 3oco_A           87 KISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRDEQ  149 (153)
T ss_dssp             BGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC------
T ss_pred             cHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCCcc
Confidence            899999 5  3899999999999999999999999999997 999999999999999998765544

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.88  E-value=4.3e-22  Score=146.05  Aligned_cols=144  Identities=44%  Similarity=0.747  Sum_probs=117.7

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      .+|+++|.+... ...+++++.+++++.+|++.|.+++.+.+||+  + +|+++|+|+.+|+++.+..........++++
T Consensus         7 ~~v~dim~~~~~-~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~--~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~   82 (157)
T 4fry_A            7 TTVAQILKAKPD-SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVV--D-GDDIAGIVTERDYARKVVLQERSSKATRVEE   82 (157)
T ss_dssp             CBHHHHHHHSTT-TTCCCCEEETTSBHHHHHHHHHHHTCSEEEEE--S-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHH
T ss_pred             HHHHHHHhcccc-cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEe--e-CCEEEEEEEHHHHHHHHHhccCCccccCHHH
Confidence            579999997510 00026899999999999999999999999997  5 8899999999998887665544345788999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhhhHHHHHHHhhhcC
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQG  203 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~~~~~~~l~~~i~~  203 (205)
                      +|.+.  +.++++++++.+|++.|.+++.+.+||+|+|+++|+||..|+++.+.+...+....++.++.+
T Consensus        83 ~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~l~~~~~~~~~~~~~~i~~  150 (157)
T 4fry_A           83 IMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTISQLEHYIHG  150 (157)
T ss_dssp             HSBSS--CCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCCCCC--------
T ss_pred             HcCCC--CcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHHHHhhHHHHHhhccC
Confidence            99985  899999999999999999999999999999999999999999999998887766677666554

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.88  E-value=6.1e-22  Score=141.16  Aligned_cols=125  Identities=15%  Similarity=0.267  Sum_probs=107.3

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC-CCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~-~~~~~G~v~~~dll~~~~~~~~~~~~~~v~  132 (205)
                      ++|+++|.+..+     ++++++++++.+|++.|.+++++.+||+  ++ +|+++|+|+.+|+++.+.. +......++.
T Consensus         2 ~~v~~iM~~~~~-----~~~v~~~~~v~~a~~~m~~~~~~~~pVv--~~~~~~lvGivt~~dl~~~~~~-~~~~~~~~v~   73 (130)
T 3hf7_A            2 VSVNDIMVPRNE-----IVGIDINDDWKSIVRQLTHSPHGRIVLY--RDSLDDAISMLRVREAYRLMTE-KKEFTKEIML   73 (130)
T ss_dssp             CBHHHHSEEGGG-----CCEEETTSCHHHHHHHHHTCSSSEEEEE--SSSGGGEEEEEEHHHHHHHHTS-SSCCCHHHHH
T ss_pred             cCHHHhCccHHH-----EEEEcCCCCHHHHHHHHHHCCCCeEEEE--cCCCCcEEEEEEHHHHHHHHhc-cCccchhhHH
Confidence            689999976322     8899999999999999999999999999  54 6899999999998776543 2222345789


Q ss_pred             cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      ++|++   ++++++++++.+|++.|.+++.+.+||+|+ |+++|+||.+|+++.+.++
T Consensus        74 ~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           74 RAADE---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             HHSBC---CCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred             HhccC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence            99954   889999999999999999999999999986 9999999999999998764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.88  E-value=1.3e-22  Score=145.71  Aligned_cols=130  Identities=20%  Similarity=0.334  Sum_probs=106.8

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      +.+|+++|.+..+     ++++++++++.+|++.|.+++++.+||+  +++ |+++|+|+.+|+++.+...  .....++
T Consensus         2 ~~~v~~iM~~~~~-----~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~~~--~~~~~~v   72 (136)
T 3lfr_A            2 DLQVRDIMVPRSQ-----MISIKATQTPREFLPAVIDAAHSRYPVI--GESHDDVLGVLLAKDLLPLILKA--DGDSDDV   72 (136)
T ss_dssp             -CBHHHHSEEGGG-----CCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGGSS--SGGGCCG
T ss_pred             CCChHhccccHHH-----EEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHHhc--cCCCcCH
Confidence            5789999995322     7899999999999999999999999999  666 8999999999987654311  2346789


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHH
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREEL  194 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~  194 (205)
                      +++|++   ++++++++++.+|++.|.+++.+.+||+|+ |+++|+||..|+++.+.+...++.
T Consensus        73 ~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de~  133 (136)
T 3lfr_A           73 KKLLRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEH  133 (136)
T ss_dssp             GGTCBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--------
T ss_pred             HHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCcc
Confidence            999976   899999999999999999999999999986 899999999999999887665543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.88  E-value=1.3e-21  Score=139.92  Aligned_cols=123  Identities=37%  Similarity=0.646  Sum_probs=110.1

Q ss_pred             cHhHHhh---hcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           55 TISDILK---AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        55 ~v~d~m~---~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      +|+++|.   ++       ++++++++++.+|++.|.+++.+.+||+  | +|+++|+|+.+|+++.+...+......++
T Consensus         7 ~v~~im~~~~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~~~~~~~~~~~v   76 (135)
T 2rc3_A            7 TVKHLLQEKGHT-------VVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQV   76 (135)
T ss_dssp             BHHHHHHHHCCC-------CCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSBG
T ss_pred             eHHHHHhcCCCC-------cEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEehHHHHHHHHHcCCCcccCCH
Confidence            8999999   44       8999999999999999999999999999  6 78999999999988655544433457789


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~  189 (205)
                      .++|.+.  +.++++++++.+|++.|.+++.+.+||+++|+++|+||..|+++.+.+.
T Consensus        77 ~~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           77 KEIMTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             GGTSBCS--CCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC-
T ss_pred             HHhccCC--CeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHHHHhc
Confidence            9999884  9999999999999999999999999999999999999999999998765

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.87  E-value=1.3e-21  Score=137.37  Aligned_cols=119  Identities=28%  Similarity=0.445  Sum_probs=107.6

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      .+|+++|.++       ++++++++++.++++.|.+++.+.+||+  |++|+++|+|+.+|+++.+..     ...++++
T Consensus         1 ~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~-----~~~~v~~   66 (122)
T 3kpb_A            1 TLVKDILSKP-------PITAHSNISIMEAAKILIKHNINHLPIV--DEHGKLVGIITSWDIAKALAQ-----NKKTIEE   66 (122)
T ss_dssp             CBHHHHCCSC-------CCCEETTSBHHHHHHHHHHHTCSCEEEE--CTTSBEEEEECHHHHHHHHHT-----TCCBGGG
T ss_pred             CchHHhhCCC-------CEEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHHHHHHh-----cccCHHH
Confidence            3689999986       8999999999999999999999999999  889999999999998876543     2348999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +|.+.  +.++++++++.+|++.|.+++.+.+||+++ |+++|+||..|+++.+.+
T Consensus        67 ~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 IMTRN--VITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             TSBSS--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             HhcCC--CeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            99884  899999999999999999999999999998 999999999999998764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.87  E-value=5.8e-22  Score=145.81  Aligned_cols=129  Identities=18%  Similarity=0.244  Sum_probs=111.5

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC---CCcC
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---SKST  129 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~---~~~~  129 (205)
                      ..+++++|.|..+     ++++.+++|+.+|+++|.+++++++||+  |++|+++|+||.+|+++.+...+..   ....
T Consensus        14 ~~~~~~iM~P~~~-----v~~v~~~~t~~~a~~~m~~~~~s~~pVv--d~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~   86 (156)
T 3k6e_A           14 LGQEETFLTPAKN-----LAVLIDTHNADHATLLLSQMTYTRVPVV--TDEKQFVGTIGLRDIMAYQMEHDLSQEIMADT   86 (156)
T ss_dssp             HTTGGGGEEETTS-----SCCEETTSBHHHHHHHHTTSSSSEEEEE--CC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTS
T ss_pred             hccHHHhCcchhH-----eEEECCcCCHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEecchhhhhhhccccccccccc
Confidence            4578999998654     8999999999999999999999999999  8889999999999998877654322   2357


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhH
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHRE  192 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~  192 (205)
                      ++.++|.+.  +.++++++++.+|++.|.+++  .+||+|+ |+++|+||++|+++++.....+
T Consensus        87 ~v~~im~~~--~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~~  146 (156)
T 3k6e_A           87 DIVHMTKTD--VAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHD  146 (156)
T ss_dssp             BGGGTCBCS--CCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSCC
T ss_pred             CHHHhhcCC--ceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhcc
Confidence            899999985  999999999999999998875  4999987 9999999999999999766543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.87  E-value=3.5e-21  Score=141.87  Aligned_cols=128  Identities=18%  Similarity=0.291  Sum_probs=112.3

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHc-------CC
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ-------GR  124 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~-------~~  124 (205)
                      ...+|+++|.++       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+...       ..
T Consensus         3 ~~~~v~dim~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~~~~   73 (160)
T 2o16_A            3 LMIKVEDMMTRH-------PHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDS   73 (160)
T ss_dssp             CCCBGGGTSEES-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC-------
T ss_pred             CcCcHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHhhcccccccc
Confidence            357899999986       8999999999999999999999999999  8889999999999988765431       11


Q ss_pred             CCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       125 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                      .....++.++|.+.  ++++++++++.+|++.|.+++.+.+||+++|+++|+||..|+++.+.+..
T Consensus        74 ~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           74 LAFETPLFEVMHTD--VTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             --CCCBHHHHSCSC--EEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred             hhcccCHHHHhcCC--CeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence            23467899999984  99999999999999999999999999999999999999999999987654

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.87  E-value=2.9e-22  Score=142.06  Aligned_cols=123  Identities=18%  Similarity=0.373  Sum_probs=106.0

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      +.+|+++|.+..+     ++++++++++.+|++.|.+++.+.+||+  +++ |+++|+|+.+|+++.+..   .....++
T Consensus         2 ~~~v~diM~~~~~-----~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~~---~~~~~~v   71 (127)
T 3nqr_A            2 DQRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMRS---DAEAFSM   71 (127)
T ss_dssp             -CBHHHHSEEGGG-----CCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGST---TCCCCCH
T ss_pred             CcCHHHhcccHHH-----eEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhc---cCCCCCH
Confidence            5789999996422     7899999999999999999999999999  776 899999999998765432   1246789


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +++|++   +.++++++++.+|++.|.+++.+.+||+|+ |+++|+||+.|+++.+.+
T Consensus        72 ~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           72 DKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             HHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             HHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            999966   788999999999999999999999999996 999999999999998753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.87  E-value=1.9e-21  Score=138.55  Aligned_cols=127  Identities=35%  Similarity=0.551  Sum_probs=111.6

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      .+.+|+++|.+.       ++++++++++.+|++.|.+++.+.+||+  | +|+++|+|+.+|+++.+...  .....++
T Consensus         2 ~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~~~--~~~~~~v   69 (133)
T 2ef7_A            2 EEEIVKEYMKTQ-------VISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIGKG--KSLETKA   69 (133)
T ss_dssp             CCCBGGGTSBCS-------CCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTT--CCTTCBG
T ss_pred             CcccHHHhccCC-------CEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEcHHHHHHHHhcC--CCcccCH
Confidence            567899999986       8999999999999999999999999999  7 89999999999987654432  2235789


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhH
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHRE  192 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~  192 (205)
                      +++|.+.  +.++++++++.+|++.|.+++.+++||+++ |+++|+||..|+++.+.+...+
T Consensus        70 ~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~~  129 (133)
T 2ef7_A           70 EEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFET  129 (133)
T ss_dssp             GGTSEEC--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC--
T ss_pred             HHHcCCC--CEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHHH
Confidence            9999874  899999999999999999999999999995 9999999999999999877654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.87  E-value=4.1e-22  Score=142.07  Aligned_cols=127  Identities=24%  Similarity=0.522  Sum_probs=109.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      +...+|+++|.++       ++++++++++.++++.|.+++.+.+||+  |++|+++|+|+.+|+++.++..+......+
T Consensus         5 ~~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   75 (133)
T 1y5h_A            5 FTMTTARDIMNAG-------VTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTAT   75 (133)
T ss_dssp             ---CCHHHHSEET-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSB
T ss_pred             hhhcCHHHHhcCC-------ceEeCCCCCHHHHHHHHHHhCCCeEEEE--CCCCeEEEEEeHHHHHHHHHhcCCCccccC
Confidence            3457899999976       8899999999999999999999999999  888999999999998744443333334678


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHh
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~  188 (205)
                      ++++|.+.  ++++++++++.+|++.|.+++.+++||+++|+++|+||..|+++.+.+
T Consensus        76 v~~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           76 AGELARDS--IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             HHHHHTTC--CCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTCC-
T ss_pred             HHHHhcCC--CEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            99999874  899999999999999999999999999999999999999999987643

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.87  E-value=1.4e-21  Score=142.15  Aligned_cols=131  Identities=15%  Similarity=0.270  Sum_probs=112.2

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC----CC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SS  126 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~----~~  126 (205)
                      +...+|+++|.+..+     ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+.....    ..
T Consensus        12 l~~~~v~~im~~~~~-----~~~v~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   84 (150)
T 3lqn_A           12 FQQIFVKDLMISSEK-----VAHVQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLISTAMILDGILGLERIEFERL   84 (150)
T ss_dssp             HHHCBHHHHSEEGGG-----SCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHTBCSSSBCGGGG
T ss_pred             hhcCChhhcccCCCc-----eEEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCCEEEEEEHHHHHHHHHhhcccchhHH
Confidence            678999999996322     8899999999999999999999999999  889999999999998876532111    12


Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhH
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHRE  192 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~  192 (205)
                      ...++.++|.+.  +.++++++++.+|++.|.++++  +||+++ |+++|+||..|+++.+.+...+
T Consensus        85 ~~~~v~~~m~~~--~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~~  147 (150)
T 3lqn_A           85 EEMKVEQVMKQD--IPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQ  147 (150)
T ss_dssp             GGCBGGGTCBSS--CCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             hcCCHHHHhcCC--CceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhHh
Confidence            467899999974  8999999999999999999986  999995 9999999999999999887654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.87  E-value=3.1e-21  Score=138.30  Aligned_cols=128  Identities=28%  Similarity=0.471  Sum_probs=113.3

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      |...+|+++|.++       ++++++++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.++..+. ....+
T Consensus         4 l~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~-~~~~~   73 (138)
T 2yzi_A            4 DMKAPIKVYMTKK-------LLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGL-PYDIP   73 (138)
T ss_dssp             CTTSBGGGTCBCC-------CCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCC-CTTSB
T ss_pred             hhhhhHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHhcCC-cccCC
Confidence            6778999999976       8999999999999999999999999999  788999999999998755443332 34678


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee-CCeEEEEEeHHHHHHHHHhhhh
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRAVVSEHR  191 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~-~~~~vGiIt~~dil~~l~~~~~  191 (205)
                      +.++|.+.  +.++++++++.+|++.|.+++.+++ |++ +|+++|+||..|+++.+.+...
T Consensus        74 v~~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~  132 (138)
T 2yzi_A           74 VERIMTRN--LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLE  132 (138)
T ss_dssp             GGGTCBCS--CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSC
T ss_pred             HHHHhhCC--CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHH
Confidence            99999874  9999999999999999999999999 998 5999999999999999886543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.87  E-value=2.7e-21  Score=136.20  Aligned_cols=123  Identities=24%  Similarity=0.380  Sum_probs=108.1

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      ++|+++|.++       ++++++++++.+|++.|.+++.+.+||+  | +|+++|+|+.+|+++.+... ......++.+
T Consensus         1 m~v~~~m~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~G~it~~dl~~~~~~~-~~~~~~~v~~   69 (125)
T 1pbj_A            1 MRVEDVMVTD-------VDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIAEG-DDLAEVKVWE   69 (125)
T ss_dssp             -CHHHHCBCS-------CCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHHHT-CCTTTSBHHH
T ss_pred             CCHHHhcCCC-------ceEECCCCcHHHHHHHHHHcCCCEEEEE--e-CCeeEEEEeHHHHHHHHhcC-CcccccCHHH
Confidence            4789999986       8999999999999999999999999999  7 89999999999987655433 2334678999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~  189 (205)
                      +|.+.  +.++++++++.++++.|.+++.+.+||+++|+++|+||..|+++.+.+.
T Consensus        70 ~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A           70 VMERD--LVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             HCBCG--GGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC--
T ss_pred             HcCCC--CeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHHhc
Confidence            99874  8999999999999999999999999999999999999999999987543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.87  E-value=2e-21  Score=142.96  Aligned_cols=132  Identities=25%  Similarity=0.373  Sum_probs=115.3

Q ss_pred             cccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCc
Q 028667           49 HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (205)
Q Consensus        49 ~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~  128 (205)
                      ..+...+|+++|.+        ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+.... ....
T Consensus        12 ~~l~~~~v~~im~~--------~~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~-~~~~   80 (159)
T 3fv6_A           12 DKLKKLQVKDFQSI--------PVVIHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIGQQ-ELTS   80 (159)
T ss_dssp             HHHTTCBGGGSCBC--------CCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHTSCS-CTTT
T ss_pred             HHHhhCCHHHHcCC--------CEEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHhhccC-cccC
Confidence            34678999999986        5599999999999999999999999999  88899999999999887654332 3456


Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-C---eEEEEEeHHHHHHHHHhhhh
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-K---GMIGMVSIGDVVRAVVSEHR  191 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~---~~vGiIt~~dil~~l~~~~~  191 (205)
                      .++.++|.+.++++++++++++.+|++.|.+++++++||+++ |   +++|+||..|+++.+.+...
T Consensus        81 ~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~  147 (159)
T 3fv6_A           81 VPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSE  147 (159)
T ss_dssp             CBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHT
T ss_pred             cCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhh
Confidence            789999997223899999999999999999999999999997 5   99999999999999987654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.86  E-value=3.8e-21  Score=139.95  Aligned_cols=120  Identities=25%  Similarity=0.433  Sum_probs=107.8

Q ss_pred             cccHhHHhhh--cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           53 STTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        53 ~~~v~d~m~~--~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      ..+|+++|.+  +       ++++++++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+. .+......+
T Consensus        27 ~~~v~dim~~~~~-------~~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~-~~~~~~~~~   96 (149)
T 3k2v_A           27 LLRVNDIMHTGDE-------IPHVGLQATLRDALLEITRKNLGMTAIC--DDDMNIIGIFTDGDLRRVFD-TGVDMRDAS   96 (149)
T ss_dssp             TSBGGGTSBCGGG-------SCEECTTCBHHHHHHHHHHHTSSEEEEE--CTTCBEEEEEEHHHHHHHHC-SSSCCTTCB
T ss_pred             ccCHHHHhcCCCC-------CeEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCcEEEEecHHHHHHHHh-cCCCcccCc
Confidence            3689999998  5       8999999999999999999999999999  88899999999999876543 332335778


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR  184 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~  184 (205)
                      ++++|.+.  +.++++++++.+|++.|.+++.+.+||+++++++|+||..|+++
T Consensus        97 v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil~  148 (149)
T 3k2v_A           97 IADVMTRG--GIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLLR  148 (149)
T ss_dssp             HHHHSEES--CCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHTC
T ss_pred             HHHHcCCC--CeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhhc
Confidence            99999885  89999999999999999999999999999999999999999975

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.86  E-value=1.4e-21  Score=138.70  Aligned_cols=124  Identities=15%  Similarity=0.215  Sum_probs=108.5

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      .+.+++++|.++       ++++++++++.+|++.|.+++.+.+||+  |+ |+++|+|+.+|+++.+.. + .....++
T Consensus         3 ~s~~v~~~m~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~-~~~~Givt~~dl~~~~~~-~-~~~~~~v   70 (128)
T 3gby_A            3 ASVTFSYLAETD-------YPVFTLGGSTADAARRLAASGCACAPVL--DG-ERYLGMVHLSRLLEGRKG-W-PTVKEKL   70 (128)
T ss_dssp             TTCBGGGGCBCC-------SCCEETTSBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHTTCSS-S-CCTTCBC
T ss_pred             cceEHHHhhcCC-------cceECCCCCHHHHHHHHHHCCCcEEEEE--EC-CEEEEEEEHHHHHHHHhh-C-CcccCcH
Confidence            467899999987       8999999999999999999999999999  67 999999999998764321 1 1122679


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +++|.+.  +.++++++++.+|++.|.+++.+++||+|+ |+++|+||..|+++.+.+.
T Consensus        71 ~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           71 GEELLET--VRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             CGGGCBC--CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred             HHHccCC--CcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence            9999884  899999999999999999999999999985 9999999999999998653

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.85  E-value=3.6e-21  Score=143.92  Aligned_cols=129  Identities=21%  Similarity=0.316  Sum_probs=111.6

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      |...+|+++|.+..+     ++++++++++.+|++.|.+++++.+||+  +++ |+++|+|+.+|+++.+...    ...
T Consensus        33 l~~~~v~diM~~~~~-----v~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~lvGivt~~Dl~~~~~~~----~~~  101 (173)
T 3ocm_A           33 LAERSIRSIMTPRTD-----VSWVNIDDDAATIRQQLTAAPHSFFPVC--RGSLDEVVGIGRAKDLVADLITE----GRV  101 (173)
T ss_dssp             HTTSCSTTTSEEGGG-----CCCEETTSCHHHHHHHHHHSSCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHH----SSC
T ss_pred             cCCCCHHHhCCcHHH-----eEEEeCCCCHHHHHHHHHhCCCCEEEEE--eCCCCCEEEEEEHHHHHHHHhcC----Ccc
Confidence            688999999985322     8899999999999999999999999999  665 8999999999988766543    245


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHH
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREEL  194 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~  194 (205)
                      ++. +|++   ++++++++++.+|++.|.+++.+.+||+|+ |+++|+||..|+++.+.+...++.
T Consensus       102 ~v~-~~~~---~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~  163 (173)
T 3ocm_A          102 RRN-RLRD---PIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDED  163 (173)
T ss_dssp             CGG-GSBC---CCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCTT
T ss_pred             hhH-hcCC---CeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCcc
Confidence            677 5544   899999999999999999999999999986 999999999999999987765443

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.85  E-value=3.2e-21  Score=155.09  Aligned_cols=133  Identities=21%  Similarity=0.392  Sum_probs=114.6

Q ss_pred             ccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhc-----CCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC
Q 028667           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR  124 (205)
Q Consensus        50 ~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~-----~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~  124 (205)
                      .+...+|+++|.+.       ++++++++++.+|++.|.++     +++.+||+  |++|+++|+|+.+|++..      
T Consensus       133 ~~~~~~v~~iM~~~-------~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVv--d~~~~lvGivt~~dll~~------  197 (286)
T 2oux_A          133 HYEDETAGAIMTTE-------FVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIVN------  197 (286)
T ss_dssp             TSCTTBHHHHCBSC-------CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTTS------
T ss_pred             cCChHHHHHhCCCC-------ceEECCCCcHHHHHHHHHHcccCccceeEEEEE--cCCCeEEEEEEHHHHHcC------
Confidence            36789999999986       99999999999999999987     78889999  888999999999998652      


Q ss_pred             CCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHhh
Q 028667          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNAF  200 (205)
Q Consensus       125 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~~  200 (205)
                       ....+++++|.+.  ++++++++++.+|++.|.+++...+||+|+ |+++|+||..|+++.+.+...+...++.+.
T Consensus       198 -~~~~~v~~im~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~~ed~~~~~g~  271 (286)
T 2oux_A          198 -DDDTLIADILNER--VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEAASDYSGLAGV  271 (286)
T ss_dssp             -CTTSBHHHHSBSC--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHHHC--------
T ss_pred             -CCCCcHHHHcCCC--CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHhHHHHHHhcCC
Confidence             3467899999874  899999999999999999999999999996 999999999999999999988888888876

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.85  E-value=7.9e-21  Score=136.12  Aligned_cols=125  Identities=26%  Similarity=0.522  Sum_probs=109.8

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHH-HHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY-LRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dl-l~~~~~~~~~~~~~  129 (205)
                      +...+++++|.+.       ++++.+++++.++.+.|.+++.+.+||+  |++|+++|+|+.+|+ ++.+. .+ .....
T Consensus         5 l~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~-~~-~~~~~   73 (138)
T 2p9m_A            5 LKNIKVKDVMTKN-------VITAKRHEGVVEAFEKMLKYKISSLPVI--DDENKVIGIVTTTDIGYNLIR-DK-YTLET   73 (138)
T ss_dssp             CTTCBGGGTSBCS-------CCCEETTSBHHHHHHHHHHHTCCEEEEE--CTTCBEEEEEEHHHHHHHHTT-TC-CCSSC
T ss_pred             cccCCHHHhhcCC-------ceEECCCCcHHHHHHHHHHCCCcEEEEE--CCCCeEEEEEEHHHHHHHHHh-hc-ccCCc
Confidence            5678999999876       8899999999999999999999999999  788999999999998 66433 22 23467


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCC-----CCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNR-----IRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~-----~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +++++|.+.  +.++++++++.++++.|.+++     .+.+||+++ |+++|+||..|+++.+.+
T Consensus        74 ~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           74 TIGDVMTKD--VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             BHHHHSCSS--CCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CHHHHhCCC--cEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            899999874  899999999999999999999     999999994 999999999999998765

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.85  E-value=4.5e-21  Score=139.26  Aligned_cols=132  Identities=22%  Similarity=0.394  Sum_probs=108.7

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHc---------
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ---------  122 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~---------  122 (205)
                      ...+|+++|.+..+     ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+...         
T Consensus         3 ~~~~v~~im~~~~~-----~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~   75 (152)
T 4gqw_A            3 GVYTVGEFMTKKED-----LHVVKPTTTVDEALELLVENRITGFPVI--DEDWKLVGLVSDYDLLALDSGDSTWKTFNAV   75 (152)
T ss_dssp             CCSBGGGTSEESTT-----CCCBCTTSBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHTTCC----CCHHHHHH
T ss_pred             ceEEhhhccCCCCC-----CeEECCCCcHHHHHHHHHHcCCceEEEE--eCCCeEEEEEEHHHHHHhhcccCcccchHHH
Confidence            45789999998322     8999999999999999999999999999  8889999999999986421100         


Q ss_pred             ---CCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhH
Q 028667          123 ---GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHRE  192 (205)
Q Consensus       123 ---~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~  192 (205)
                         .......++.++|.+.  ++++++++++.+|++.|.+++.+.+||+++ |+++|+||.+|+++.+.+....
T Consensus        76 ~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~~  147 (152)
T 4gqw_A           76 QKLLSKTNGKLVGDLMTPA--PLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRS  147 (152)
T ss_dssp             HTC-----CCBHHHHSEES--CCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC----
T ss_pred             HHHHHHhccccHHHhcCCC--ceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhcccc
Confidence               0112356899999985  889999999999999999999999999995 9999999999999999876543

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.85  E-value=1.6e-20  Score=135.20  Aligned_cols=122  Identities=20%  Similarity=0.319  Sum_probs=108.2

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCC--ceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK--SVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~--~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      ..+|+++|.+.       ++++++++++.+|++.|.+++.+.+||+  |++|  +++|+|+.+|+++.+...  .....+
T Consensus         4 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~~~Givt~~dl~~~~~~~--~~~~~~   72 (141)
T 2rih_A            4 AIRTSELLKRP-------PVSLPETATIREVATELAKNRVGLAVLT--ARDNPKRPVAVVSERDILRAVAQR--LDLDGP   72 (141)
T ss_dssp             -CBGGGGCCSC-------CEEEETTCBHHHHHHHHHHHTCSEEEEE--ETTEEEEEEEEEEHHHHHHHHHTT--CCTTSB
T ss_pred             ceEHHHHhcCC-------CeEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCcceeEEEEEHHHHHHHHhcC--CCCCCC
Confidence            36899999986       8999999999999999999999999999  7777  999999999988765432  123678


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +.++|.+.  +++++++ ++.+|++.|.+++.+++||+++ |+++|+||..|+++.+..
T Consensus        73 v~~~m~~~--~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           73 AMPIANSP--ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             SGGGCBCC--CEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             HHHHcCCC--CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence            99999884  9999999 9999999999999999999995 999999999999988765

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.85  E-value=3.7e-21  Score=143.74  Aligned_cols=132  Identities=25%  Similarity=0.457  Sum_probs=111.2

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC---------
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG---------  123 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~---------  123 (205)
                      .++|+++|.+...     ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+...+         
T Consensus         3 ~~~v~dim~~~~~-----~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~   75 (180)
T 3sl7_A            3 GYTVGDFMTPRQN-----LHVVKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLALDSISGRSQNDTNLF   75 (180)
T ss_dssp             CCBHHHHSEEGGG-----CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHTCC--------------
T ss_pred             ceeHHHhcCCCCC-----ceeeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCeEEEEEEHHHHHhhhhhccccCCccccc
Confidence            4689999998311     8999999999999999999999999999  88999999999999874211100         


Q ss_pred             -----------------CCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHH
Q 028667          124 -----------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRA  185 (205)
Q Consensus       124 -----------------~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~  185 (205)
                                       ......+++++|.+.  ++++++++++.+|++.|.+++.+.+||+++ |+++|+||+.|+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~  153 (180)
T 3sl7_A           76 PDVDSTWKTFNELQKLISKTYGKVVGDLMTPS--PLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRA  153 (180)
T ss_dssp             -----CCCSHHHHHHHHHTTTTCBHHHHSEES--CCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             ccccchhhhhHHHHHHHhccccccHHHHhCCC--ceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHH
Confidence                             012356899999985  899999999999999999999999999995 999999999999999


Q ss_pred             HHhhhhHH
Q 028667          186 VVSEHREE  193 (205)
Q Consensus       186 l~~~~~~~  193 (205)
                      +.....+.
T Consensus       154 ~~~~~~~~  161 (180)
T 3sl7_A          154 ALQIKRNA  161 (180)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHhhhh
Confidence            98765543

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.85  E-value=3.6e-21  Score=154.16  Aligned_cols=135  Identities=22%  Similarity=0.427  Sum_probs=108.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhc-----CCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS  125 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~-----~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~  125 (205)
                      +...+++++|.++       ++++.+++++.++++.|.+.     +...+||+  |++|+++|+|+.+|++..       
T Consensus       132 ~~~~~v~~iM~~~-------~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~~-------  195 (278)
T 2yvy_A          132 YEEDEAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA-------  195 (278)
T ss_dssp             SCTTBGGGTCBSC-------CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEE--CTTCBEEEEEEHHHHHHS-------
T ss_pred             CCcchHHhhcCCC-------ceEECCCCcHHHHHHHHHHccCCccceeEEEEE--CCCCCEEEEEEHHHHhcC-------
Confidence            6788999999986       89999999999999999986     78999999  888999999999998752       


Q ss_pred             CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHhhhcC
Q 028667          126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNAFIQG  203 (205)
Q Consensus       126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~~i~~  203 (205)
                      ....+++++|.+.  ++++++++++.+|++.|.+++.+.+||+|+ |+++|+||..|+++.+.+...+...++.+.-..
T Consensus       196 ~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~~ed~~~~~g~~~~  272 (278)
T 2yvy_A          196 DPRTRVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDIHKLGAVDVP  272 (278)
T ss_dssp             CTTCBSTTTSBSS--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC-----------------
T ss_pred             CCCCcHHHHhCCC--CeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHhHHHHHHhcCCCcc
Confidence            3467899999874  999999999999999999999999999996 999999999999999999988888888776443

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.84  E-value=2.7e-20  Score=134.05  Aligned_cols=130  Identities=20%  Similarity=0.337  Sum_probs=107.8

Q ss_pred             cccccHhH---HhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC
Q 028667           51 FESTTISD---ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK  127 (205)
Q Consensus        51 ~~~~~v~d---~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~  127 (205)
                      +.+.++++   +|.++       ++++++++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+........
T Consensus         5 ~~~~~v~~~~~~~~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~   75 (144)
T 2nyc_A            5 FLKIPIGDLNIITQDN-------MKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDL   75 (144)
T ss_dssp             GGGSBGGGSSCCBCSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC----C
T ss_pred             hhhcchhhcCCCCCCC-------ceEECCCCcHHHHHHHHHHcCcceeeEE--cCCCcEEEEEcHHHHHHHhcccccccC
Confidence            34556777   77655       8999999999999999999999999999  788999999999998876543221234


Q ss_pred             cCccccccccCC----ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          128 STKVGDIMTEEN----KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       128 ~~~v~~im~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      ..++.++|.+..    ++.++++++++.+|++.|.+++.+.+||+++ |+++|+||..|+++.+.+.
T Consensus        76 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  142 (144)
T 2nyc_A           76 SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  142 (144)
T ss_dssp             CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             CccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHhc
Confidence            678999997521    3889999999999999999999999999996 9999999999999998653

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.84  E-value=3.9e-20  Score=136.16  Aligned_cols=131  Identities=15%  Similarity=0.211  Sum_probs=110.9

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC--CCceEEEEehHHHHHHHHHcCCC---
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRS---  125 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~--~~~~~G~v~~~dll~~~~~~~~~---  125 (205)
                      +...+|+++|.++       ++++++++++.+|++.|.+++.+.+||+  |+  +|+++|+|+..|+++.+......   
T Consensus        10 ~~~~~v~dim~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~pVv--d~~~~~~~~Givt~~dl~~~~~~~~~~~~~   80 (164)
T 2pfi_A           10 SHHVRVEHFMNHS-------ITTLAKDTPLEEVVKVVTSTDVTEYPLV--ESTESQILVGIVQRAQLVQALQAEPPSRAP   80 (164)
T ss_dssp             CCSCBHHHHCBCC-------CCCEETTCBHHHHHHHHHTCCCSEEEEE--SCTTTCBEEEEEEHHHHHHHHHC-------
T ss_pred             ccCCCHHHHcCCC-------CeEECCCCcHHHHHHHHHhCCCCceeEE--ecCCCCEEEEEEEHHHHHHHHHhhccccCC
Confidence            4578999999986       8999999999999999999999999999  65  79999999999987765422111   


Q ss_pred             CCcCccccccccC----CceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          126 SKSTKVGDIMTEE----NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       126 ~~~~~v~~im~~~----~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                      ....++.++|.+.    +.+.++++++++.+|++.|.+++.+++||+++|+++|+||+.|+++.+.+..
T Consensus        81 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A           81 GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             cccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHhhh
Confidence            1245789999862    0168899999999999999999999999999999999999999999987654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.84  E-value=1.6e-20  Score=141.37  Aligned_cols=125  Identities=22%  Similarity=0.413  Sum_probs=111.7

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~  132 (205)
                      ..+|+++|.+.       ++++++++++.+|++.|.+++.+.+||+  +++|+++|+|+.+|+++.+..........+++
T Consensus         8 ~~~v~~im~~~-------~~~v~~~~~l~ea~~~~~~~~~~~~pVv--d~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~   78 (184)
T 1pvm_A            8 FMRVEKIMNSN-------FKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEVPIR   78 (184)
T ss_dssp             CCBGGGTSBTT-------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGG
T ss_pred             ccCHHHhcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhcccCcccCCHH
Confidence            47899999876       8999999999999999999999999999  77899999999999887654323234567899


Q ss_pred             cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      ++|.+.  ++++++++++.+|++.|.+++.+.+||+++ |+++|+||..|+++.+.+
T Consensus        79 ~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           79 LVMRKP--IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             GTSBSS--CCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             HHhCCC--CcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            999974  899999999999999999999999999998 999999999999998766

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.84  E-value=1.9e-20  Score=137.52  Aligned_cols=130  Identities=14%  Similarity=0.227  Sum_probs=111.3

Q ss_pred             cccccHhHHhhh--cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC----
Q 028667           51 FESTTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----  124 (205)
Q Consensus        51 ~~~~~v~d~m~~--~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~----  124 (205)
                      +...+|+++|.+  +       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+.....    
T Consensus        11 l~~~~v~~im~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~   81 (159)
T 1yav_A           11 LLEATVGQFMIEADK-------VAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFE   81 (159)
T ss_dssp             CTTCBHHHHSEEGGG-------SCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGG
T ss_pred             HhHhhHHHHhCCccc-------eEEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCCEEEEeEHHHHHHHhhhhcccchh
Confidence            567899999998  5       8999999999999999999999999999  888999999999998775532111    


Q ss_pred             CCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHH
Q 028667          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREE  193 (205)
Q Consensus       125 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~  193 (205)
                      .....++.++|.+.  +.++++++++.+|++.|.++++  +||+++ |+++|+||..|+++.+.+...+.
T Consensus        82 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~~  147 (159)
T 1yav_A           82 KLDQITVEEVMLTD--IPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRSL  147 (159)
T ss_dssp             GTTTSBHHHHSBCS--CCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC---
T ss_pred             hhccCCHHHhcCCC--CceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHhh
Confidence            03467899999984  8999999999999999999876  999995 99999999999999998776543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.84  E-value=2e-21  Score=142.63  Aligned_cols=119  Identities=18%  Similarity=0.339  Sum_probs=104.8

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      +...+|+++|.+..+     ++++++++++.+|++.|.+++++.+||+  +++ ++++|+|+.+|+++.+..    ....
T Consensus        35 l~~~~v~diM~~~~~-----~~~v~~~~~i~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~----~~~~  103 (156)
T 3oi8_A           35 FSDLEVRDAMITRSR-----MNVLKENDSIERITAYVIDTAHSRFPVI--GEDKDEVLGILHAKDLLKYMFN----PEQF  103 (156)
T ss_dssp             HTTCBGGGTCEEGGG-----CCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGSSC----GGGC
T ss_pred             cCCCCHhheeeeHHH-----eEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHHc----CCcc
Confidence            678999999997322     8899999999999999999999999999  666 599999999998764321    1467


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHH
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVV  183 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil  183 (205)
                      +++++|++   +.++++++++.+|++.|.+++.+.+||+|+ |+++|+||+.|++
T Consensus       104 ~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 HLKSILRP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             CHHHHCBC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             cHHHHcCC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            89999976   889999999999999999999999999987 8999999999986

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.84  E-value=2.2e-20  Score=137.00  Aligned_cols=128  Identities=19%  Similarity=0.302  Sum_probs=112.0

Q ss_pred             ccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCe-EEEEecCCCCceEEEEehHHHHHHHHHc------
Q 028667           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA-LVVVKPGEQKSVAGIITERDYLRKIIVQ------  122 (205)
Q Consensus        50 ~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~-~~Vv~~d~~~~~~G~v~~~dll~~~~~~------  122 (205)
                      .+...+|+++|.++       ++++++++++.+|++.|.+++.+. +||+  |++ +++|+|+.+|+++.+...      
T Consensus        12 ~~~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~~Vv--d~~-~~vGivt~~dl~~~~~~~~~~~~~   81 (157)
T 1o50_A           12 HMKVKDVCKLISLK-------PTVVEEDTPIEEIVDRILEDPVTRTVYVA--RDN-KLVGMIPVMHLLKVSGFHFFGFIP   81 (157)
T ss_dssp             TCBHHHHTTSSCCC-------CEEECTTCBHHHHHHHHHHSTTCCEEEEE--ETT-EEEEEEEHHHHHHHHHHHHHCCCC
T ss_pred             hhccccHhhcccCC-------CceECCCCCHHHHHHHHHhCCCCccEEEE--ECC-EEEEEEEHHHHHHHHhhhHHhhhc
Confidence            36788999999986       999999999999999999999999 9999  666 999999999988765421      


Q ss_pred             --------CCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          123 --------GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       123 --------~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                              .......++.++|.+   ++++++++++.+|++.|.+++.+.+||+++ |+++|+||+.|+++.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A           82 KEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             -------CCCCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence                    112346789999987   788999999999999999999999999994 99999999999999987643

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.84  E-value=8.3e-20  Score=137.02  Aligned_cols=137  Identities=18%  Similarity=0.253  Sum_probs=114.0

Q ss_pred             cccccHhHHhhhcCCCCCCCceEe--CCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC-----
Q 028667           51 FESTTISDILKAKGKGADGSWLWC--TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-----  123 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v--~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~-----  123 (205)
                      +...+|+++|.+..+   .+++++  .+++++.+|++.|.+++.+.+||+++|++|+++|+|+..|+++.+....     
T Consensus         8 ~~~~~v~dim~~~~~---~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~   84 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRN---DPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDG   84 (185)
T ss_dssp             -CCCBHHHHSBSCTT---SCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSC
T ss_pred             hccCcHHHHhccccc---CceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCC
Confidence            567899999997521   014677  9999999999999999999999993226789999999999887765421     


Q ss_pred             ------------------CCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHH
Q 028667          124 ------------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA  185 (205)
Q Consensus       124 ------------------~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~  185 (205)
                                        ......++.++|.+.  ++++++++++.+|++.|.+++.+++||+++|+++|+||+.|+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~~dll~~  162 (185)
T 2j9l_A           85 VVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS--PFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKH  162 (185)
T ss_dssp             CCTTCEEECSSSCCCCCTTCCCCEECGGGEESS--CCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ccccceeecccCCcccccccccCccHHHhhCcC--CeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEHHHHHHH
Confidence                              012456899999874  999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhH
Q 028667          186 VVSEHRE  192 (205)
Q Consensus       186 l~~~~~~  192 (205)
                      +.+...+
T Consensus       163 l~~~~~~  169 (185)
T 2j9l_A          163 IAQMANQ  169 (185)
T ss_dssp             HHHHCC-
T ss_pred             HHHhhcc
Confidence            9877654

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.84  E-value=2.1e-20  Score=136.81  Aligned_cols=130  Identities=16%  Similarity=0.264  Sum_probs=109.7

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC----CCC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG----RSS  126 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~----~~~  126 (205)
                      +...+|+++|.+..+     ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+....    ...
T Consensus         8 l~~~~v~~im~~~~~-----~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            8 FMQMTVKPFLIPADK-----VAHVQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             --CCBSTTTCEEGGG-----SCCBCTTSBHHHHHHHHHHSSSSEEEEE--CTTCCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             HhhCcHHhhccCCcc-----ceEECCCCcHHHHHHHHHHCCceEEEEE--cCCCCEEEEeeHHHHHHHHhcccccchHHh
Confidence            577899999996211     8899999999999999999999999999  78899999999999876543210    012


Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhh
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHR  191 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~  191 (205)
                      ...++.++|.+.  ++++++++++.+|++.|.++++  +||+++ |+++|+||..|+++.+.+...
T Consensus        81 ~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A           81 ETMKVEEVMNRN--IPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             GTCBGGGTCBCC--CCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred             cCCcHHHHhCCC--CceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence            356899999884  9999999999999999999987  999996 899999999999999987654

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.80  E-value=3.1e-19  Score=140.65  Aligned_cols=128  Identities=13%  Similarity=0.155  Sum_probs=106.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC--CCceEEEEehHHHHHHHHHc----CC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQ----GR  124 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~--~~~~~G~v~~~dll~~~~~~----~~  124 (205)
                      ...++|+|+|.++       ++++.+++++.+|.++|.+++++.+|||  ++  +++++|+|+++||++.+...    ..
T Consensus        10 ~~~~~v~diMt~~-------vvtv~~~~tv~~~~~lm~~~~~~~~PVV--d~~~~~~LvGiIt~~dl~~~l~~~~~~~~~   80 (250)
T 2d4z_A           10 KYNIQVGDIMVRD-------VTSIASTSTYGDLLHVLRQTKLKFFPFV--DTPDTNTLLGSIDRTEVEGLLQRRISAYRR   80 (250)
T ss_dssp             CSSCBTTSSSBSS-------CCCEETTCBHHHHHHHHHHCCCSEEEEE--SCTTTCBEEEEEEHHHHHHHHHHHHHTTSS
T ss_pred             cCCCChHHhcCCC-------CeEECCCCCHHHHHHHHHhcCCCEEEEE--ecCCCCeEEEEEEHHHHHHHHHHhhhhhhh
Confidence            4578999999987       8999999999999999999999999999  54  47899999999988755321    00


Q ss_pred             C--C----------------------------------------------------------------------------
Q 028667          125 S--S----------------------------------------------------------------------------  126 (205)
Q Consensus       125 ~--~----------------------------------------------------------------------------  126 (205)
                      .  .                                                                            
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  160 (250)
T 2d4z_A           81 QPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGT  160 (250)
T ss_dssp             SCCCCCCBCCC---------------------------------------------------------------------
T ss_pred             hhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccc
Confidence            0  0                                                                            


Q ss_pred             -----------------------CcCcc--c-cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHH
Q 028667          127 -----------------------KSTKV--G-DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIG  180 (205)
Q Consensus       127 -----------------------~~~~v--~-~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~  180 (205)
                                             ...++  . .+|.+.  ++++.+++++.++..+|...|+.++||++.|+++|+||++
T Consensus       161 ~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~s--P~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrk  238 (250)
T 2d4z_A          161 GQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQS--PFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALA  238 (250)
T ss_dssp             ------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECC--SCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHH
T ss_pred             cccCcccccccChhhhhhHHHHhcCceeccccccccCC--CeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHH
Confidence                                   01122  2 367775  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 028667          181 DVVRAVVSE  189 (205)
Q Consensus       181 dil~~l~~~  189 (205)
                      |+++++.+.
T Consensus       239 Dl~kai~~~  247 (250)
T 2d4z_A          239 EIQAAIEGS  247 (250)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999998754

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.80  E-value=2.6e-19  Score=153.10  Aligned_cols=131  Identities=23%  Similarity=0.457  Sum_probs=116.9

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhc-----CCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS  125 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~-----~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~  125 (205)
                      +.+.+++++|.++       ++++++++++.++++.|.+.     +...+||+  |++++++|+|+.+|++..       
T Consensus       152 ~~~~~v~~iM~~~-------~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVv--d~~~~lvGiVt~~Dll~~-------  215 (473)
T 2zy9_A          152 YEEDEAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA-------  215 (473)
T ss_dssp             SCTTBSTTTCBSC-------EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEE--CTTSBEEEEEEHHHHHHS-------
T ss_pred             CCCCCHHHhCCCC-------ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEE--CCCCcEEEEEEHHHHhcC-------
Confidence            6789999999986       99999999999999999985     47899999  788999999999998752       


Q ss_pred             CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHh
Q 028667          126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNA  199 (205)
Q Consensus       126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~  199 (205)
                      ..+.+++++|++.  ++++++++++.++++.|.+++...+||+|+ |+++|+||.+|+++.+.+...++..+..+
T Consensus       216 ~~~~~v~dim~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e~~ed~~~~~~  288 (473)
T 2zy9_A          216 DPRTRVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDIHKLGA  288 (473)
T ss_dssp             CTTSBGGGTSBSS--CCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCcHHHHhCCC--CeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHHhhhhhhhccc
Confidence            3567999999874  999999999999999999999999999997 99999999999999998887766665543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.79  E-value=5.1e-19  Score=138.89  Aligned_cols=126  Identities=19%  Similarity=0.247  Sum_probs=102.6

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC-------
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------  125 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~-------  125 (205)
                      ..+|+++|.++       ++++.+++++.+|++.|.+++++.+||+  |++|+++|+||..|+++.+......       
T Consensus         6 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~l~Giit~~di~~~~~~~~~~~~~~~~~   76 (245)
T 3l2b_A            6 KLKVEDLEMDK-------IAPLAPEVSLKMAWNIMRDKNLKSIPVA--DGNNHLLGMLSTSNITATYMDIWDSNILAKSA   76 (245)
T ss_dssp             CCBGGGSCCBC-------CCCBCTTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTT
T ss_pred             cCcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHHhhhhhhhhhcc
Confidence            46899999986       8999999999999999999999999999  8889999999999998876432100       


Q ss_pred             --------------------------------------------------------------------------------
Q 028667          126 --------------------------------------------------------------------------------  125 (205)
Q Consensus       126 --------------------------------------------------------------------------------  125 (205)
                                                                                                      
T Consensus        77 ~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v  156 (245)
T 3l2b_A           77 TSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEI  156 (245)
T ss_dssp             CCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHH
T ss_pred             CCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence                                                                                            


Q ss_pred             -------------------------CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeH
Q 028667          126 -------------------------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSI  179 (205)
Q Consensus       126 -------------------------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~  179 (205)
                                               ....+++++|++ .++.++++++++.+|++.|.++++..+||+|+ |+++|+||.
T Consensus       157 ~~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~  235 (245)
T 3l2b_A          157 IELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTK-DNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIAR  235 (245)
T ss_dssp             HHHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBC-TTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEC
T ss_pred             HHHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecC-CccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEH
Confidence                                     013468899983 14999999999999999999999999999996 999999999


Q ss_pred             HHHHHHHHh
Q 028667          180 GDVVRAVVS  188 (205)
Q Consensus       180 ~dil~~l~~  188 (205)
                      +|+++...+
T Consensus       236 ~dll~~~~~  244 (245)
T 3l2b_A          236 FHLISTHKK  244 (245)
T ss_dssp             C--------
T ss_pred             HHhhchhhc
Confidence            999987643

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.79  E-value=9.6e-19  Score=134.81  Aligned_cols=121  Identities=17%  Similarity=0.282  Sum_probs=108.1

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ...+++++|.++       ++++.+++++.+|++.|.+++.+.+||+  |++++++|+|+.+|+++.       ....++
T Consensus        11 ~~~~~~~~~~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~l~Givt~~dl~~~-------~~~~~v   74 (213)
T 1vr9_A           11 HHMKVKKWVTQD-------FPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLDL-------DLDSSV   74 (213)
T ss_dssp             --CBGGGGCBSC-------SCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTTS-------CTTSBS
T ss_pred             cccCHHHhhcCC-------CeEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCEEEEEEEHHHHHhh-------cCCCcH
Confidence            456899999987       8999999999999999999999999999  788999999999997642       235689


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      .++|.+.  ++++++++++.+|++.|.+++++++||+++ |+++|+||.+|+++.+....
T Consensus        75 ~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~  132 (213)
T 1vr9_A           75 FNKVSLP--DFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  132 (213)
T ss_dssp             GGGCBCT--TCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             HHHccCC--CEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh
Confidence            9999984  899999999999999999999999999998 99999999999999887543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.78  E-value=1.2e-18  Score=141.75  Aligned_cols=129  Identities=19%  Similarity=0.319  Sum_probs=111.5

Q ss_pred             ccccHhHH---hhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCc
Q 028667           52 ESTTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (205)
Q Consensus        52 ~~~~v~d~---m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~  128 (205)
                      ...+++++   |.++       ++++.+++++.++++.|.+++.+.+||+  |++|+++|+|+.+|+++.+.........
T Consensus       185 ~~~~v~~~~~~m~~~-------~~~v~~~~~~~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~  255 (323)
T 3t4n_C          185 LKIPIGDLNIITQDN-------MKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLS  255 (323)
T ss_dssp             CCSBGGGTTCSBCTT-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETTHHHHHHHTTHHHHTT
T ss_pred             hhCcHHHcCCCCCCC-------cEEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHHHHHHhhchhhhcc
Confidence            45688999   7665       8999999999999999999999999999  8899999999999988765432111235


Q ss_pred             CccccccccCC----ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          129 TKVGDIMTEEN----KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       129 ~~v~~im~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      .+++++|.+..    +++++++++++.+|++.|.+++++++||+|+ |+++|+||..|+++++...
T Consensus       256 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          256 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             SBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             CCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            68999999732    3899999999999999999999999999996 9999999999999998754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.78  E-value=2e-18  Score=138.81  Aligned_cols=132  Identities=20%  Similarity=0.221  Sum_probs=115.1

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC-----C
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-----S  125 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~-----~  125 (205)
                      ....+++++|.+.       ++++.+++++.++++.|.+++.+.+||+  |++|+++|+|+.+|+++.+.....     .
T Consensus       153 ~~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~  223 (296)
T 3ddj_A          153 DEIFPVKVFMSTK-------VQTIYKEVRLDQAVKLMLRRGFRRLPVI--DDDNKVVGIVTVVNAIKQLAKAVDKLDPDY  223 (296)
T ss_dssp             CCCCBHHHHSBCS-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHHHHTCTHH
T ss_pred             cccccHHHhhcCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHHHHhhcChhh
Confidence            3456899999875       8999999999999999999999999999  889999999999999876642100     1


Q ss_pred             CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHH
Q 028667          126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREE  193 (205)
Q Consensus       126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~  193 (205)
                      ....++.++|.+.  ++++++++++.+|++.|.+++.+++||+++ |+++|+||+.|+++.+.+...+.
T Consensus       224 ~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~~~  290 (296)
T 3ddj_A          224 FYGKVVKDVMVTN--LVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVME  290 (296)
T ss_dssp             HHTCBHHHHSBCC--CCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred             hcCcCHHHHhCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhcch
Confidence            1356899999984  999999999999999999999999999995 99999999999999999876543

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.76  E-value=1.2e-17  Score=132.70  Aligned_cols=124  Identities=19%  Similarity=0.460  Sum_probs=110.5

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~  132 (205)
                      +.+++++|.++       ++++++++++.++++.|.+++.+.+||+  |++|+++|+++.+|+++.+....  ....+++
T Consensus        83 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~--~~~~~v~  151 (280)
T 3kh5_A           83 NEPVREIMEEN-------VITLKENADIDEAIETFLTKNVGGAPIV--NDENQLISLITERDVIRALLDKI--DENEVID  151 (280)
T ss_dssp             TSBGGGTSBCS-------CCCEETTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHGGGS--CTTCBSG
T ss_pred             hhhHHHhcCCC-------CEEECCCCCHHHHHHHHHhCCCCEEEEE--cCCCEEEEEEEHHHHHHHHhhcC--CCCCCHH
Confidence            56899999986       8999999999999999999999999999  88999999999999887654332  2345899


Q ss_pred             cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhh
Q 028667          133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~  189 (205)
                      ++|.+.  +.++++++++.++++.|.+++.+.+||+++|+++|+||.+|+++.+...
T Consensus       152 ~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~~  206 (280)
T 3kh5_A          152 DYITRD--VIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSD  206 (280)
T ss_dssp             GGCBCS--CCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTSH
T ss_pred             HHhCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhhh
Confidence            999874  8999999999999999999999999999779999999999999998643

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.75  E-value=7.8e-18  Score=145.88  Aligned_cols=126  Identities=15%  Similarity=0.215  Sum_probs=111.9

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCC-chHHHHHHHHHhcCCCeEEEEecC-CCCceEEEEehHHHHHHHHHcCCCCCc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKS  128 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~-~~l~~a~~~~~~~~~~~~~Vv~~d-~~~~~~G~v~~~dll~~~~~~~~~~~~  128 (205)
                      |...+|+++|.++       ++++.++ +++.+++++|.+++++.+||+  | ++++++|+||.+|+++.+.... ....
T Consensus       381 l~~~~V~diM~~~-------~vtv~~~~~tv~ea~~~m~~~~~~~lpVv--d~~~g~lvGiVt~~Dll~~l~~~~-~~~~  450 (527)
T 3pc3_A          381 WWSLAIAELELPA-------PPVILKSDATVGEAIALMKKHRVDQLPVV--DQDDGSVLGVVGQETLITQIVSMN-RQQS  450 (527)
T ss_dssp             TTTSBGGGGCCCC-------CSCCEETTCBHHHHHHHHHHHTCSEEEEE--CTTTCCEEEEEEHHHHHHHHHHHC-CCTT
T ss_pred             ccCCcHHHhCcCC-------CeEEcCCCCcHHHHHHHHHHcCCCeEEEE--ECCCCEEEEEEEHHHHHHHHHhcc-CcCC
Confidence            4578999999976       8999999 999999999999999999999  7 7899999999999988776543 2356


Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-----CeEEEEEeHHHHHHHHHhhh
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-----KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~vGiIt~~dil~~l~~~~  190 (205)
                      .++.++|.+.  ++++++++++.+++++|.++++  +||+++     |+++|+||+.||++.+.+..
T Consensus       451 ~~V~~im~~~--~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          451 DPAIKALNKR--VIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             SBGGGGEETT--CCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CcHHHHhcCC--CeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            7999999885  9999999999999999977664  799987     89999999999999998765

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.74  E-value=1.7e-17  Score=135.47  Aligned_cols=130  Identities=15%  Similarity=0.320  Sum_probs=110.4

Q ss_pred             cccHhHH---hhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           53 STTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        53 ~~~v~d~---m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      ..+++++   |.+.       ++++.+++++.++++.|.+++.+.+||+  |++|+++|+|+.+|+++.+..........
T Consensus       181 ~~~v~~l~~~m~~~-------~~~v~~~~~~~~~~~~m~~~~~~~~~Vv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~  251 (334)
T 2qrd_G          181 RVPLNQMTIGTWSN-------LATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDL  251 (334)
T ss_dssp             CCBGGGSSCSBCSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETHHHHHHHTTSCGGGGGS
T ss_pred             hCcHHHhCCcccCC-------ceEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHHHHhhccccccccC
Confidence            4678884   6654       8899999999999999999999999999  88899999999999887654322123357


Q ss_pred             ccccccccC----CceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhh
Q 028667          130 KVGDIMTEE----NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHR  191 (205)
Q Consensus       130 ~v~~im~~~----~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~  191 (205)
                      ++.++|.+.    ++++++++++++.+|++.|.+++.+++||+++ |+++|+||..|+++.+.+...
T Consensus       252 ~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~~  318 (334)
T 2qrd_G          252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKT  318 (334)
T ss_dssp             BHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCCC
T ss_pred             cHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhccc
Confidence            899999841    13899999999999999999999999999996 999999999999999987654

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.74  E-value=4.5e-19  Score=156.52  Aligned_cols=169  Identities=13%  Similarity=0.057  Sum_probs=125.7

Q ss_pred             cCCcchHHHHHHHhhcCCCCcccccccc----------cccccccc-----------cccccccccHhHHhhhcCCCCCC
Q 028667           11 HGNIVKSAVLQRIRLVNPMLRPVVSSRF----------ESVSSARM-----------EEHGFESTTISDILKAKGKGADG   69 (205)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~-----------~~~~~~~~~v~d~m~~~~~~~~~   69 (205)
                      ++|++.- +..|++.+.....|.+....          .+..+..+           ......+.+|+|+|.+..+    
T Consensus       390 ~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~----  464 (632)
T 3org_A          390 RALSCAV-IIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEG----  464 (632)
T ss_dssp             CCTTHHH-HHHHHTCCCSCSHHHHHHHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTT----
T ss_pred             HHHHHHH-HHHHHhCChhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccccccccccccCcHHHHhhcCCC----
Confidence            4677764 77888887777777654420          01111111           1111367899999994322    


Q ss_pred             CceEeCCCchHHHHHHHHH-hcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC-----------------------
Q 028667           70 SWLWCTTDDTVYDAVKSMT-QHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-----------------------  125 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~-~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~-----------------------  125 (205)
                       ++++++++++.++.+.|. +++++.+||+  |++++++|+|+.+|+++.+......                       
T Consensus       465 -v~~v~~~~t~~e~~~~~~~~~~~~~~PVv--d~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  541 (632)
T 3org_A          465 -EPHLFPDSEPQHIKGILEKFPNRLVFPVI--DANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENI  541 (632)
T ss_dssp             -SCCBCSSSCHHHHHHHHHHSTTCCEECBB--CTTCBBCCEESHHHHTTTTTTC--------------------------
T ss_pred             -ceEecCCCcHHHHHHHHHhcCCcceEEEE--ecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccCHHHHHhhc
Confidence             889999999999999999 7999999999  7889999999999987654221000                       


Q ss_pred             -----------------------CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHH
Q 028667          126 -----------------------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV  182 (205)
Q Consensus       126 -----------------------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~di  182 (205)
                                             ....++.++|+++  +.++++++++.++++.|.+++.+++||+++|+++|+||++|+
T Consensus       542 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~--pitV~~~~~l~ea~~~M~~~~i~~lpVve~G~lvGIVT~~Dl  619 (632)
T 3org_A          542 EGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVS--PIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDV  619 (632)
T ss_dssp             -----------------------------CCSCCCC--CCEEETTCBHHHHHHHHHHTCCSEEEEEETTEEEEEEEGGGT
T ss_pred             ccCCCCCcccchhhhcccceEeeccccccchhhcCC--CceecCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehhhH
Confidence                                   0011378899985  899999999999999999999999999987999999999999


Q ss_pred             HHHHHhh
Q 028667          183 VRAVVSE  189 (205)
Q Consensus       183 l~~l~~~  189 (205)
                      ++.+.+.
T Consensus       620 l~~~~~~  626 (632)
T 3org_A          620 AYGYSNS  626 (632)
T ss_dssp             EECCCC-
T ss_pred             HHHHhhh
Confidence            8876544

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.74  E-value=6.5e-18  Score=134.58  Aligned_cols=126  Identities=24%  Similarity=0.328  Sum_probs=106.3

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH------HHHH-----
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL------RKII-----  120 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll------~~~~-----  120 (205)
                      ...+++++|.+.       ++++++++++.++.+.|.+++.+.+||+  |++|+++|+|+..|++      +.+.     
T Consensus       124 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~~~  194 (282)
T 2yzq_A          124 KGVEIEPYYQRY-------VSIVWEGTPLKAALKALLLSNSMALPVV--DSEGNLVGIVDETDLLRDSEIVRIMKSTELA  194 (282)
T ss_dssp             GGCBSTTTSBSC-------CCCEETTSBHHHHHHHHHTCSSSEEEEE--CTTSCEEEEEEGGGGGGCGGGCC--------
T ss_pred             ccCcHHHHhCCC-------CEEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHhhhhhhhhhhccchhh
Confidence            356889999765       8899999999999999999999999999  8889999999999987      4331     


Q ss_pred             -Hc-----------------CCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHH
Q 028667          121 -VQ-----------------GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGD  181 (205)
Q Consensus       121 -~~-----------------~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~d  181 (205)
                       ..                 .......+++++|.+.  +.++++++++.+|++.|.+++++++||+++ |+++|+||+.|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~D  272 (282)
T 2yzq_A          195 ASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRD--VIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFD  272 (282)
T ss_dssp             ------------------------CCCBGGGTCBSS--CCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHH
T ss_pred             hhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCC--CceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHH
Confidence             00                 0112357899999984  999999999999999999999999999998 79999999999


Q ss_pred             HHHHHHh
Q 028667          182 VVRAVVS  188 (205)
Q Consensus       182 il~~l~~  188 (205)
                      +++.+.+
T Consensus       273 il~~~~~  279 (282)
T 2yzq_A          273 LLKVLVK  279 (282)
T ss_dssp             HGGGGCC
T ss_pred             HHHHHHh
Confidence            9987653

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.73  E-value=2e-17  Score=132.85  Aligned_cols=124  Identities=24%  Similarity=0.395  Sum_probs=110.4

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ...+++++|.++       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+++.+|+++.+..   .....++
T Consensus        91 ~~~~v~~im~~~-------~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~lvGivt~~dl~~~~~~---~~~~~~v  158 (296)
T 3ddj_A           91 STTPIIDYMTPN-------PVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLLYKD---LDEIFPV  158 (296)
T ss_dssp             HTSBGGGTSEES-------CCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGGGGG---SCCCCBH
T ss_pred             hcccHHHhccCC-------CEEEcCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHhhhc---ccccccH
Confidence            367899999986       8899999999999999999999999999  889999999999998764322   1235689


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +++|.+.  +.++++++++.++++.|.+++.+.+||+++ |+++|+||..|+++.+.+.
T Consensus       159 ~~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  215 (296)
T 3ddj_A          159 KVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA  215 (296)
T ss_dssp             HHHSBCS--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HHhhcCC--CeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence            9999874  899999999999999999999999999995 9999999999999998744

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.71  E-value=7.2e-17  Score=128.17  Aligned_cols=126  Identities=22%  Similarity=0.363  Sum_probs=104.9

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC-CCceEEEEehHHHHHHHHH--------cCC-
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIV--------QGR-  124 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~-~~~~~G~v~~~dll~~~~~--------~~~-  124 (205)
                      ++++.+.+.      +++++++++|+.+|++.|.+++++.+||+  ++ +|+++|++|.+|+++.+..        ... 
T Consensus         4 ~v~~~i~~~------~~~~v~~~~sl~~a~~~m~~~~~~~lpV~--d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~   75 (280)
T 3kh5_A            4 RVMKIAQNK------KIVTVYPTTTIRKALMTMNENKYRRLPVV--NAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHE   75 (280)
T ss_dssp             BGGGTSCCS------CCCCBCTTSBHHHHHHHHHHHCCCEEEEE--CTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTST
T ss_pred             hHHHHhcCC------CcEEECCCCcHHHHHHHHHhCCCcEeeEE--ECCCCeEEEEEEHHHHHHHhcccchhhhhhhccc
Confidence            455555443      28999999999999999999999999999  65 7999999999998875411        100 


Q ss_pred             ----CCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          125 ----SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       125 ----~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                          .....+++++|.+.  ++++++++++.+|++.|.+++.+++||+++ |+++|++|..|+++.+....
T Consensus        76 ~~~~~~~~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~  144 (280)
T 3kh5_A           76 RNFLAAINEPVREIMEEN--VITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKI  144 (280)
T ss_dssp             TCHHHHTTSBGGGTSBCS--CCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGS
T ss_pred             cchhHHhhhhHHHhcCCC--CEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcC
Confidence                01145899999984  999999999999999999999999999987 99999999999999876543

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.69  E-value=3.6e-17  Score=130.27  Aligned_cols=117  Identities=19%  Similarity=0.325  Sum_probs=87.6

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      ++|+++|.++       ++++++++++.+|++.|.+++.+.+||+  +++|+++|+++..|++..+       ...++++
T Consensus         1 m~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~pV~--d~~~~~~Giv~~~dl~~~~-------~~~~v~~   64 (282)
T 2yzq_A            1 MRVKTIMTQN-------PVTITLPATRNYALELFKKYKVRSFPVV--NKEGKLVGIISVKRILVNP-------DEEQLAM   64 (282)
T ss_dssp             CBHHHHSEES-------CCCEESSCC------------CCEEEEE--CTTCCEEEEEESSCC-----------------C
T ss_pred             CchHHhccCC-------CeEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhhh-------ccCCHHH
Confidence            4789999976       8999999999999999999999999999  7789999999999987532       3568999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH-HHHh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR-AVVS  188 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~-~l~~  188 (205)
                      +|.+.  ++++++++++.+|++.|.+++.+.+||+++ |+++|+||..|+++ .+.+
T Consensus        65 ~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A           65 LVKRD--VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             CCBSC--CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             HcCCC--CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhc
Confidence            99884  899999999999999999999999999997 89999999999998 6653

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.68  E-value=2.4e-16  Score=128.54  Aligned_cols=118  Identities=20%  Similarity=0.282  Sum_probs=101.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccccccc----CCceEEEcC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE----ENKLITVSP  146 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~----~~~~~~v~~  146 (205)
                      ++++.+++++.++++.|.+++.+.+||+  |++|+++|+|+.+|+++.+..........++.++|..    .++++++++
T Consensus       203 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~  280 (330)
T 2v8q_E          203 IAMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYL  280 (330)
T ss_dssp             CCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEECT
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhccccccCCCeEECC
Confidence            8899999999999999999999999999  8889999999999987654322111225688999851    114899999


Q ss_pred             CCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          147 DTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       147 ~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      ++++.+|++.|.+++.+++||+++ |+++|+||..|+++.+.+..
T Consensus       281 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~  325 (330)
T 2v8q_E          281 HETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG  325 (330)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             CCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence            999999999999999999999997 99999999999999987654

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.67  E-value=4.4e-16  Score=126.49  Aligned_cols=116  Identities=17%  Similarity=0.336  Sum_probs=101.5

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCc-----eEEEEehHHHHHHHHHcCC--CCCcCccccc---cccCCc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS-----VAGIITERDYLRKIIVQGR--SSKSTKVGDI---MTEENK  140 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~-----~~G~v~~~dll~~~~~~~~--~~~~~~v~~i---m~~~~~  140 (205)
                      ++++++++++.+|++.|.+++.+.+||+  ++++.     ++|++|.+|+++.+.....  .....+++++   |.+.  
T Consensus       124 ~v~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~--  199 (323)
T 3t4n_C          124 TASIHPSRPLFEACLKMLESRSGRIPLI--DQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDN--  199 (323)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEE--EECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTT--
T ss_pred             ceEeCCCCcHHHHHHHHHhCCeeEEEEE--ecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCC--
Confidence            8899999999999999999999999999  66664     9999999999887654321  2335689999   8764  


Q ss_pred             eEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      ++++++++++.+|++.|.+++++.+||+++ |+++|+||..|+++.+....
T Consensus       200 ~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~  250 (323)
T 3t4n_C          200 MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI  250 (323)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTH
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhch
Confidence            999999999999999999999999999997 89999999999999987654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.65  E-value=3.1e-16  Score=127.82  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcC---C--
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQG---R--  124 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~---~--  124 (205)
                      +.+.+|+|+|.+..+     ++++++++++.+|++.|.+++++.+||+  +++ ++++|+|+.+|++..+....   .  
T Consensus        32 l~~~~v~dim~p~~~-----v~~v~~~~~v~~a~~~~~~~~~~~~pV~--d~~~~~~vGivt~~Dll~~l~~~~~~~~~~  104 (330)
T 2v8q_E           32 MKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLW--DSKKQSFVGMLTITDFINILHRYYKSALVQ  104 (330)
T ss_dssp             HHHSBGGGGSCSEEE-----EEEEETTSBHHHHHHHHHHHTCSEEEEE--ETTTTEEEEEEEHHHHHHHHHHHHHHHTTT
T ss_pred             HHcCcHhhhccCCCc-----EEEEeCCCcHHHHHHHHHHcCCcEEEEE--eCCCCeEEEEEEHHHHHHHHHHHHhccccc
Confidence            577899999944322     8999999999999999999999999999  555 79999999999987654311   0  


Q ss_pred             --CCCcCc-------cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee--CCeEEEEEeHHHHHHHHHhh
Q 028667          125 --SSKSTK-------VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID--DKGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       125 --~~~~~~-------v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~--~~~~vGiIt~~dil~~l~~~  189 (205)
                        ......       ++++|.+.  ++++++++++.+|++.|.+++.+++||++  +|+++|+||..|+++.+...
T Consensus       105 ~~~l~~~~~~~~~~~~~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~  178 (330)
T 2v8q_E          105 IYELEEHKIETWREVYLQDSFKP--LVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  178 (330)
T ss_dssp             CCCGGGCBHHHHHHHHSSSSCCC--CCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             hhHHhhccHHHHHHHHhhcccCC--ceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHH
Confidence              000112       24567764  99999999999999999999999999998  58999999999999988653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.64  E-value=6.2e-16  Score=133.14  Aligned_cols=123  Identities=25%  Similarity=0.445  Sum_probs=104.8

Q ss_pred             HhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC--CCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        56 v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~--~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      |+++|....- -..+++++++++|+.++.++|.+++++.+||+  ++  +++++|+|+.+|++.      ......++.+
T Consensus       109 V~~V~~~~~~-m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVv--d~g~~~~lvGiVt~rDl~~------~~~~~~~V~~  179 (511)
T 3usb_A          109 VDKVKRSESG-VISDPFFLTPEHQVYDAEHLMGKYRISGVPVV--NNLDERKLVGIITNRDMRF------IQDYSIKISD  179 (511)
T ss_dssp             HHHHHTSSSC-SSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEE--SCTTTCBEEEEEEHHHHTT------CCCSSSBHHH
T ss_pred             HHHhhccccc-cccCCEEECCCCCHHHHHHHHHHcCCcEEEEE--ecCCCCEEEEEEEehHhhh------hccCCCcHHH
Confidence            6666665210 01138899999999999999999999999999  77  899999999999753      1335778999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +|++. +++++++++++.+++++|.+++.+.+||+|+ |+++|+||.+|+++.+..
T Consensus       180 vM~~~-~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          180 VMTKE-QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             HCCCC-CCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             hcccC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            99972 3999999999999999999999999999997 999999999999999875

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.61  E-value=5.1e-15  Score=127.18  Aligned_cols=118  Identities=22%  Similarity=0.386  Sum_probs=105.6

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecC--CCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG--EQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d--~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~  132 (205)
                      .++++|.++       ++++++++++.++++.|.+++++.+||+  +  ++++++|+|+.+|++..      .....++.
T Consensus        91 ~~~~im~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~lvGivt~~Dl~~~------~~~~~~v~  155 (491)
T 1zfj_A           91 RSENGVIID-------PFFLTPEHKVSEAEELMQRYRISGVPIV--ETLANRKLVGIITNRDMRFI------SDYNAPIS  155 (491)
T ss_dssp             HHTTTTSSS-------CCCBCSSSBHHHHHHHHHHTTCSEEEEE--SCTTTCBEEEEEEHHHHHHC------SCSSSBTT
T ss_pred             hHHhcCcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--EeCCCCEEEEEEEHHHHhhh------ccCCCcHH
Confidence            457888875       8999999999999999999999999999  7  78999999999998642      23567899


Q ss_pred             cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      ++|++. +++++++++++.++++.|.+++.+.+||+|+ |+++|+||..|+++.+..
T Consensus       156 ~im~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          156 EHMTSE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             TSCCCS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            999961 2889999999999999999999999999997 999999999999999874

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.61  E-value=1.2e-16  Score=137.05  Aligned_cols=117  Identities=23%  Similarity=0.301  Sum_probs=89.6

Q ss_pred             HhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccccc
Q 028667           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM  135 (205)
Q Consensus        56 v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im  135 (205)
                      ++++|..+       ++++++++++.++.++|.+++++.+||+  |++++++|+|+.+|++.      ......++.++|
T Consensus        91 ~~~~m~~d-------~v~v~~~~tv~ea~~~m~~~~~s~~PVv--d~~~~lvGiVt~rDL~~------~~~~~~~v~diM  155 (496)
T 4fxs_A           91 FEAGVVTH-------PVTVRPEQTIADVMELTHYHGFAGFPVV--TENNELVGIITGRDVRF------VTDLTKSVAAVM  155 (496)
T ss_dssp             CCC--CBC-------CCCBCSSSBHHHHHHHHTSSCCCEEEEE--CSSSBEEEEEEHHHHTT------CCCTTSBGGGTS
T ss_pred             cccccccC-------ceEECCCCCHHHHHHHHHHcCCcEEEEE--ccCCEEEEEEEHHHHhh------cccCCCcHHHHh
Confidence            34567765       8999999999999999999999999999  77899999999999752      133567899999


Q ss_pred             ccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          136 TEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       136 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      ++.++++++++++++.+++++|.+++.+.+||+|+ |+++|+||.+|+++...
T Consensus       156 ~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          156 TPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             EEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence            94224899999999999999999999999999998 99999999999998754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.60  E-value=3.7e-15  Score=121.57  Aligned_cols=132  Identities=17%  Similarity=0.221  Sum_probs=104.3

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCC---CC
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGR---SS  126 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~---~~  126 (205)
                      +...+|+|+|.+..+     ++++++++|+.++++.|.+++++.+||+  +++ ++++|+|+.+|++..+.....   ..
T Consensus        19 l~~~~v~dim~~~~~-----vv~v~~~~tv~~a~~~~~~~~~~~~pV~--d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~   91 (334)
T 2qrd_G           19 IRSRTSYDVLPTSFR-----LIVFDVTLFVKTSLSLLTLNNIVSAPLW--DSEANKFAGLLTMADFVNVIKYYYQSSSFP   91 (334)
T ss_dssp             HHHSBGGGGSCSEEE-----EEEEETTSBHHHHHHHHHHHTCSCEEEE--ETTTTEEEEEECHHHHHHHHHHHHHHCSCG
T ss_pred             HhcCchhhhCCCCCC-----EEEEcCCCCHHHHHHHHHHcCCeEEEEE--eCCCCeEEEEEEHHHHHHHHHHHhhccCCc
Confidence            456899999987543     7899999999999999999999999999  554 899999999998876532100   00


Q ss_pred             C------cCccccc-------cccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-C-e----EEEEEeHHHHHHHHH
Q 028667          127 K------STKVGDI-------MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-K-G----MIGMVSIGDVVRAVV  187 (205)
Q Consensus       127 ~------~~~v~~i-------m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~-~----~vGiIt~~dil~~l~  187 (205)
                      .      ..++..+       |.+..+.+++++++++.++++.|.+++.+++||+++ | +    ++|+||.+|+++.+.
T Consensus        92 ~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~  171 (334)
T 2qrd_G           92 EAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  171 (334)
T ss_dssp             GGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHH
T ss_pred             cHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHH
Confidence            0      2233333       544312389999999999999999999999999986 4 4    999999999999887


Q ss_pred             hh
Q 028667          188 SE  189 (205)
Q Consensus       188 ~~  189 (205)
                      ..
T Consensus       172 ~~  173 (334)
T 2qrd_G          172 MN  173 (334)
T ss_dssp             HH
T ss_pred             hh
Confidence            53

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.55  E-value=2.2e-16  Score=135.34  Aligned_cols=118  Identities=23%  Similarity=0.313  Sum_probs=2.8

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      .+++++|..+       ++++++++++.++.++|.+++++.+||+  | +++++|+||.+|+...      .....++.+
T Consensus        88 k~~~~~m~~~-------~v~v~~~~tv~ea~~~m~~~~~s~~pVv--d-~g~lvGIVt~rDl~~~------~~~~~~V~~  151 (490)
T 4avf_A           88 KKHETAIVRD-------PVTVTPSTKIIELLQMAREYGFSGFPVV--E-QGELVGIVTGRDLRVK------PNAGDTVAA  151 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccC-------ceEeCCCCcHHHHHHHHHHhCCCEEEEE--E-CCEEEEEEEhHHhhhc------cccCCcHHH
Confidence            3456777765       8999999999999999999999999999  7 8999999999997531      234678999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      +|++..+++++++++++.+|+++|.+++.+.+||+|+ |+++|+||++|+++...
T Consensus       152 vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          152 IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             -------------------------------------------------------
T ss_pred             HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            9994213899999999999999999999999999997 99999999999999864

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.55  E-value=3.6e-16  Score=134.46  Aligned_cols=120  Identities=27%  Similarity=0.475  Sum_probs=7.3

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccc
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~i  134 (205)
                      +++++|.++       ++++.+++++.++++.|.+++.+.+||+  |++++++|+||.+|++..      .....++.++
T Consensus        96 ~~~~iM~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~lvGivt~~Dl~~~------~~~~~~v~~i  160 (494)
T 1vrd_A           96 KTENGIIYD-------PITVTPDMTVKEAIDLMAEYKIGGLPVV--DEEGRLVGLLTNRDVRFE------KNLSKKIKDL  160 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccC-------CeEECCCCCHHHHHHHHHHcCceEEEEE--cCCCEEEEEEEHHHHHhh------cCCCCcHHHH
Confidence            457778875       8999999999999999999999999999  788999999999997642      1245789999


Q ss_pred             cccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       135 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      |++.++++++++++++.++++.|.+++...+||+|+ |+++|+||..|+++.+...
T Consensus       161 m~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          161 MTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             ------------------------------------------------CHHHHTCT
T ss_pred             hCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            997213999999999999999999999999999997 9999999999999998654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.54  E-value=4.3e-16  Score=134.13  Aligned_cols=116  Identities=26%  Similarity=0.351  Sum_probs=0.4

Q ss_pred             hhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC---CceEEEEehHHHHHHHHHcCCCCCcCccccccc
Q 028667           60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT  136 (205)
Q Consensus        60 m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~---~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~  136 (205)
                      |.++       ++++++++|+.++++.|.+++++.+||+  |++   ++++|+|+.+|++..     ......++.++|+
T Consensus       103 M~~~-------~~~v~~~~tv~eal~~m~~~~~s~~pVv--d~~~~~g~lvGiVt~~Dl~~~-----~~~~~~~V~diM~  168 (503)
T 1me8_A          103 FVVS-------DSNVKPDQTFADVLAISQRTTHNTVAVT--DDGTPHGVLLGLVTQRDYPID-----LTQTETKVSDMMT  168 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccC-------CeEECCCCcHHHHHHHHHHcCceEEEEE--ECCCcCCeEEEEEEHHHHHhh-----hccccCcHHHHhC
Confidence            7775       8999999999999999999999999999  666   899999999998642     1234678999999


Q ss_pred             cCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          137 EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       137 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +..+++++++++++.+|+++|.+++.+.+||+|+ |+++|+||.+|+++.+...
T Consensus       169 ~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          169 PFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             -----------------------------------------------------C
T ss_pred             CCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence            7434899999999999999999999999999997 9999999999999988643

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.49  E-value=2.3e-15  Score=127.70  Aligned_cols=109  Identities=21%  Similarity=0.346  Sum_probs=0.0

Q ss_pred             CceEeCCCchHHHHHHHHHhcCCCeEEEEecC-CCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCC
Q 028667           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (205)
Q Consensus        70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d-~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  148 (205)
                      +|+++.|+.|+.++.++|.+.+++.+||++++ .+++++|+||.+|+. .      .....+++++|++.  +++++.+.
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f------~d~~~~V~evMT~~--lvt~~~~~  217 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-F------QDAETPIKSVMTTE--VVTGSSPI  217 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-c------cccceEhhhhcccc--eEEecCCC
Confidence            48999999999999999999999999999421 268999999999953 2      23467999999985  99999999


Q ss_pred             cHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          149 KVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       149 ~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      ++++|.++|.+++...+||+|+ ++++|+||++|+++...
T Consensus       218 ~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          218 TLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ----------------------------------------
T ss_pred             CHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            9999999999999999999997 99999999999998765

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.38  E-value=3.2e-14  Score=122.04  Aligned_cols=112  Identities=30%  Similarity=0.509  Sum_probs=1.4

Q ss_pred             HhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccccc
Q 028667           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM  135 (205)
Q Consensus        56 v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im  135 (205)
                      ..+.|..+       ++++++++++.++.+.|.+++++.+||+  ++ ++++|+|+.+|++.        ....++.++|
T Consensus        95 ~~~~m~~~-------~~~v~~~~tv~ea~~~~~~~~~~~~pVv--d~-~~lvGivt~~Dl~~--------~~~~~v~~im  156 (486)
T 2cu0_A           95 AERLIVED-------VITIAPDETVDFALFLMEKHGIDGLPVV--ED-EKVVGIITKKDIAA--------REGKLVKELM  156 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccccC-------ceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHhcc--------CCCCCHHHHc
Confidence            34567765       8999999999999999999999999999  66 99999999999764        1356899999


Q ss_pred             ccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          136 TEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       136 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      ++.  ++++++++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++...
T Consensus       157 ~~~--~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          157 TKE--VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             ----------------------------------------------------C
T ss_pred             cCC--CeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            974  899999999999999999999999999997 89999999999999865

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.38  E-value=2.5e-15  Score=129.79  Aligned_cols=120  Identities=14%  Similarity=0.272  Sum_probs=67.3

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ++.++|.++       ++++.+++++.++.+.|.+++++.+||+  |+   +++++|+||.+|+... ..   .....++
T Consensus       109 ~~~~im~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~~lvGiVt~~Dl~~~-~~---~~~~~~v  175 (514)
T 1jcn_A          109 NFEQGFITD-------PVVLSPSHTVGDVLEAKMRHGFSGIPIT--ETGTMGSKLVGIVTSRDIDFL-AE---KDHTTLL  175 (514)
T ss_dssp             TCCTTSCSS-------CCCCCC-----------------CEESC--C--------CCEECTTTTC---------------
T ss_pred             hhhhccccC-------CEEECCCCCHHHHHHHHHhcCCCEEEEE--eCCCcCCEEEEEEEHHHHHhh-hh---ccCCCCH
Confidence            455667654       8899999999999999999999999999  66   5899999999997542 10   1245689


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      .++|++..+++++++++++.+++++|.+++...+||+|+ |+++|+||++|+++.+.
T Consensus       176 ~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          176 SEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             -----CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             HHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence            999987112899999999999999999999999999996 99999999999987765

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.33  E-value=1.9e-12  Score=81.93  Aligned_cols=65  Identities=32%  Similarity=0.553  Sum_probs=57.8

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~  138 (205)
                      +++++|++|+.+|+++|.+++.+++||+  + +|+++|+||.+|+++++...+......+++++|+++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~--d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~   66 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVM--E-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKN   66 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEEC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCC
Confidence            7899999999999999999999999999  4 589999999999988877666555677999999985

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.11  E-value=2.1e-10  Score=87.93  Aligned_cols=103  Identities=14%  Similarity=0.184  Sum_probs=55.7

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ...+++++|.++       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+....      .+
T Consensus        70 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~Dil~~~~~~~------~~  134 (213)
T 1vr9_A           70 LDSSVFNKVSLP-------DFFVHEEDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALIEAL------AM  134 (213)
T ss_dssp             TTSBSGGGCBCT-------TCCEETTSBHHHHHHHHHHCCCSEEEEE--CTTCBEEEEEEHHHHHHHHHHSC------C-
T ss_pred             CCCcHHHHccCC-------CEEECCCCcHHHHHHHHHHhCCCEEEEE--cCCCEEEEEEEHHHHHHHHHHHh------cC
Confidence            456799999986       8999999999999999999999999999  78899999999999988654321      12


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD  170 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~  170 (205)
                      .+.+..- .+.+.....++.++.++|.+++.+.++|+..
T Consensus       135 ~~~~~~l-~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~  172 (213)
T 1vr9_A          135 DVPGIRF-SVLLEDKPGELRKVVDALALSNINILSVITT  172 (213)
T ss_dssp             ---------------------------------------
T ss_pred             CCCcEEE-EEEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence            3333321 0111133346999999999999999999753

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.02  E-value=1.2e-09  Score=68.93  Aligned_cols=47  Identities=26%  Similarity=0.477  Sum_probs=44.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHH
Q 028667          141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~  187 (205)
                      ++++++++++.+|+++|.+++++.+||+++|+++|+||.+|+++.+.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHH
Confidence            78999999999999999999999999999999999999999987654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.90  E-value=3.4e-09  Score=76.13  Aligned_cols=65  Identities=15%  Similarity=0.388  Sum_probs=57.6

Q ss_pred             CCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHHHHHhh
Q 028667          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       125 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~~~  189 (205)
                      .....+++++|++..++.++++++++.+|++.|.+++++.+||+++  |+++|+||.+|+++.+...
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~   85 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE   85 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            3457799999998334999999999999999999999999999987  7999999999999987654

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.89  E-value=3.4e-09  Score=77.26  Aligned_cols=61  Identities=16%  Similarity=0.323  Sum_probs=56.3

Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      ..++++|+|..++.++++++++.+|+++|.+++++++||+|+ |+++|+||.+|+++.+...
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~   76 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEH   76 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHH
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhc
Confidence            478999998767999999999999999999999999999987 9999999999999987654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.85  E-value=1.9e-09  Score=79.47  Aligned_cols=59  Identities=24%  Similarity=0.495  Sum_probs=53.9

Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      ...+++++|++.  ++++++++++.+|++.|.+++++.+||+|+ |+++|+||.+|+++.+.
T Consensus        16 ~~~~V~diM~~~--v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~   75 (170)
T 4esy_A           16 RQVPIRDILTSP--VVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSI   75 (170)
T ss_dssp             HTSBGGGGCCSC--CCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTC
T ss_pred             cCCCHHHhcCCC--CcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHh
Confidence            357899999985  999999999999999999999999999987 89999999999987654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.83  E-value=4.8e-09  Score=73.87  Aligned_cols=61  Identities=18%  Similarity=0.315  Sum_probs=54.0

Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHHHHHhh
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~~~  189 (205)
                      .+++++|++..+++++++++++.+|++.|.+++++.+||+++  |+++|+||.+|+++.+...
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~   64 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK   64 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc
Confidence            468899976435899999999999999999999999999964  7999999999999988654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.83  E-value=4.8e-09  Score=77.46  Aligned_cols=64  Identities=9%  Similarity=0.288  Sum_probs=54.4

Q ss_pred             CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHHHHHhh
Q 028667          126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~~~  189 (205)
                      ....+++++|++..+++++++++++.+|++.|.+++++.+||+++  |+++|+||..|+++.+...
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~  104 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG  104 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc
Confidence            456789999995335899999999999999999999999999986  8999999999999987643

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.76  E-value=9e-09  Score=76.25  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=62.4

Q ss_pred             ceEEEEehHH--HHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHH
Q 028667          105 SVAGIITERD--YLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIG  180 (205)
Q Consensus       105 ~~~G~v~~~d--ll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~  180 (205)
                      .--|.++..+  ++..++    .....+++++|++.++++++++++++.+|++.|.+++++.+||+++  |+++|+|+.+
T Consensus        14 ~~~g~l~~~e~~~i~~~l----~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~   89 (173)
T 3ocm_A           14 PAVPAFGVEERNMVSGVL----TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAK   89 (173)
T ss_dssp             ----CCCHHHHHHHHHHH----HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHH
T ss_pred             HhcCCcCHHHHHHHHHHh----ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHH
Confidence            3448887444  334333    2356799999986435899999999999999999999999999985  6999999999


Q ss_pred             HHHHHHHh
Q 028667          181 DVVRAVVS  188 (205)
Q Consensus       181 dil~~l~~  188 (205)
                      |++..+..
T Consensus        90 Dl~~~~~~   97 (173)
T 3ocm_A           90 DLVADLIT   97 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.76  E-value=1.9e-08  Score=70.29  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=53.2

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ...+++++|.+        +.++.+++++.++++.|.+++.+.+||+  |++|+++|+||..|+++.+
T Consensus        67 ~~~~v~~~m~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           67 EAFSMDKVLRT--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCHHHHCBC--------CCEEETTCBHHHHHHHHHHTTCCEEEEE--CTTSCEEEEEEHHHHHHHC
T ss_pred             CCCCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHH
Confidence            56789999965        6789999999999999999999999999  8899999999999998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.75  E-value=2.6e-08  Score=69.84  Aligned_cols=59  Identities=15%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ...+++++|.+        +.++.+++++.++++.|.+++.+.+||+  |++|+++|+||..|+++.+.
T Consensus        70 ~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           70 GQKQLGAVMRP--------IQVVLNNTALPKVFDQMMTHRLQLALVV--DEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             TTSBHHHHSEE--------CCEEETTSCHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             CcCCHHHHhcC--------CcCcCCCCcHHHHHHHHHHcCCeEEEEE--cCCCCEEEEEEHHHHHHHHc
Confidence            46789999954        7899999999999999999999999999  88999999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.74  E-value=3e-08  Score=69.54  Aligned_cols=60  Identities=13%  Similarity=0.281  Sum_probs=53.1

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ...+++++|.+        ++++.+++++.++++.|.+++.+.+||+  |++|+++|+||..|+++.+..
T Consensus        67 ~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~pVv--d~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           67 PALDIRSLVRP--------AVFIPEVKRLNVLLREFRASRNHLAIVI--DEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             TTSCGGGGCBC--------CCEEETTCBHHHHHHHHHTSSCCEEEEE--CC-CCEEEEEEHHHHHHHHHH
T ss_pred             CCcCHHHHhCC--------CeEeCCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHhC
Confidence            45689999964        7899999999999999999999999999  888999999999999987653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.74  E-value=1.8e-08  Score=69.88  Aligned_cols=58  Identities=19%  Similarity=0.303  Sum_probs=52.9

Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~  189 (205)
                      +++++|.+.  +.++++++++.+|++.|.+++.+.+||+++|+++|+|+..|+++.+.+.
T Consensus         2 ~v~~~m~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~   59 (125)
T 1pbj_A            2 RVEDVMVTD--VDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG   59 (125)
T ss_dssp             CHHHHCBCS--CCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT
T ss_pred             CHHHhcCCC--ceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcC
Confidence            578899884  9999999999999999999999999999999999999999999887643

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.73  E-value=4.2e-08  Score=68.82  Aligned_cols=60  Identities=25%  Similarity=0.444  Sum_probs=55.0

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~  189 (205)
                      ..+++++|.+.  +.++++++++.+|++.|.+++.+.+||+++|+++|+|+..|+++.+.+.
T Consensus         3 ~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~   62 (133)
T 2ef7_A            3 EEIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG   62 (133)
T ss_dssp             CCBGGGTSBCS--CCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT
T ss_pred             cccHHHhccCC--CEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcC
Confidence            46899999985  8999999999999999999999999999999999999999999887653

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.71  E-value=3.7e-08  Score=70.47  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=55.4

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ...+++++|.+.       ++++.+++++.++++.|.+++.+.+||+  +++|+++|+|+.+|+++.+..
T Consensus        83 ~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           83 NGKLVGDLMTPA-------PLVVEEKTNLEDAAKILLETKYRRLPVV--DSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             -CCBHHHHSEES-------CCCEESSSBHHHHHHHHHHSSCCEEEEE--CTTSBEEEEEEHHHHHHHHHC
T ss_pred             ccccHHHhcCCC-------ceEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCcEEEEEEHHHHHHHHHh
Confidence            357899999986       8899999999999999999999999999  889999999999999987653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.69  E-value=4.1e-08  Score=72.40  Aligned_cols=61  Identities=18%  Similarity=0.283  Sum_probs=56.2

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ...+++++|.+.       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+..
T Consensus        96 ~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           96 YGKVVGDLMTPS-------PLVVRDSTNLEDAARLLLETKFRRLPVV--DADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             TTCBHHHHSEES-------CCCEETTSBHHHHHHHHTTSTTCEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             ccccHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence            467899999986       8899999999999999999999999999  889999999999999987754

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.69  E-value=4e-08  Score=76.50  Aligned_cols=61  Identities=23%  Similarity=0.479  Sum_probs=56.2

Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      ...+++++|++.  ++++++++++.+|++.|.+++++.+||+|+ |+++|+||..|+++.+...
T Consensus         5 ~~~~v~~im~~~--~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~   66 (245)
T 3l2b_A            5 VKLKVEDLEMDK--IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI   66 (245)
T ss_dssp             CCCBGGGSCCBC--CCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCC
T ss_pred             ccCcHHHhcCCC--CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            357899999985  999999999999999999999999999997 8999999999999998754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.69  E-value=4.8e-08  Score=70.52  Aligned_cols=59  Identities=25%  Similarity=0.396  Sum_probs=54.2

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ..+++++| +.       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.+..
T Consensus        85 ~~~v~~~m-~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           85 KAKISTIM-RD-------IVSVPENMKVPDVMEEMSAHRVPMAIVI--DEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             TSBGGGTC-BC-------CEEEETTSBHHHHHHHHHHTTCSCEEEE--CTTSCEEEEECHHHHHHHHHC
T ss_pred             CCcHHHHh-CC-------CeEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCCEEEEeeHHHHHHHHhc
Confidence            67899999 54       8999999999999999999999999999  889999999999999987653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.68  E-value=4.7e-08  Score=70.16  Aligned_cols=62  Identities=23%  Similarity=0.351  Sum_probs=54.9

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      ..+++++|.+..+++++++++++.+|++.|.+++...+||+++ |+++|+||..|+++.+...
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~   89 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTG   89 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSS
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcC
Confidence            3589999998223899999999999999999999999999996 8999999999999887643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.68  E-value=3.9e-08  Score=67.91  Aligned_cols=58  Identities=26%  Similarity=0.400  Sum_probs=53.0

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ..+++++|.+.       +.++.+++++.++++.|.+++.+.+||+  |++|+++|+|+..|+++.+
T Consensus        61 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           61 KKTIEEIMTRN-------VITAHEDEPVDHVAIKMSKYNISGVPVV--DDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             CCBGGGTSBSS-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHH
T ss_pred             ccCHHHHhcCC-------CeEECCCCCHHHHHHHHHHhCCCeEEEE--CCCCCEEEEEeHHHHHHHh
Confidence            34799999876       8899999999999999999999999999  8889999999999998764

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.67  E-value=8.8e-08  Score=67.90  Aligned_cols=67  Identities=19%  Similarity=0.338  Sum_probs=54.1

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ...+++++|.+.... ..++.++.+++++.++++.|.+++.+.+||+  |++|+++|+|+..|+++.+..
T Consensus        75 ~~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           75 LSLSVGEALMRRSDD-FEGVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             CCSBHHHHHHHCC-------CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCccHHHHHhcCccc-cCCCeEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEHHHHHHHHHh
Confidence            357899999862000 0017899999999999999999999999999  888999999999999887653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.66  E-value=6.2e-08  Score=70.04  Aligned_cols=75  Identities=17%  Similarity=0.337  Sum_probs=57.7

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ...+++++|.+.       +.++.+++++.++++.|.+++.+.+||+  | +|+++|+|+..|+++.+..... .....+
T Consensus        76 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dil~~l~~~~~-~~~~~~  144 (157)
T 4fry_A           76 KATRVEEIMTAK-------VRYVEPSQSTDECMALMTEHRMRHLPVL--D-GGKLIGLISIGDLVKSVIADQQ-FTISQL  144 (157)
T ss_dssp             SSCBHHHHSBSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTTCC-CCCC--
T ss_pred             cccCHHHHcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHHHHHH-hhHHHH
Confidence            478899999986       8999999999999999999999999999  6 6999999999999987765432 223455


Q ss_pred             cccccc
Q 028667          132 GDIMTE  137 (205)
Q Consensus       132 ~~im~~  137 (205)
                      ..++..
T Consensus       145 ~~~i~~  150 (157)
T 4fry_A          145 EHYIHG  150 (157)
T ss_dssp             ------
T ss_pred             HhhccC
Confidence            566554

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.66  E-value=2.5e-08  Score=70.58  Aligned_cols=60  Identities=18%  Similarity=0.323  Sum_probs=53.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ....+++++|.+        ++++.+++++.++++.|.+++.+.+||+  |++|+++|+||..|+++.+.
T Consensus        67 ~~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           67 GDSDDVKKLLRP--------ATFVPESKRLNVLLREFRANHNHMAIVI--DEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGGCCGGGTCBC--------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHTTC-
T ss_pred             CCCcCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence            356789999965        7899999999999999999999999999  88999999999999987543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.65  E-value=2.6e-08  Score=69.65  Aligned_cols=57  Identities=11%  Similarity=0.224  Sum_probs=53.0

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      .+++++|.+.       +.++.+++++.++++.|.+++...+||+  |++|+++|+|+..|+++.+
T Consensus        68 ~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           68 EKLGEELLET-------VRSYRPGEQLFDNLISVAAAKCSVVPLA--DEDGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             CBCCGGGCBC-------CCCBCTTSBGGGSHHHHHHCSSSEEEEE--CTTCBEEEEEEHHHHHHHH
T ss_pred             CcHHHHccCC-------CcEECCCCCHHHHHHHHHhCCCcEEEEE--CCCCCEEEEEEHHHHHHHH
Confidence            6799999976       8899999999999999999999999999  8899999999999998765

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.65  E-value=7.5e-08  Score=69.71  Aligned_cols=62  Identities=15%  Similarity=0.290  Sum_probs=56.3

Q ss_pred             CCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCE-EEEeeCCeEEEEEeHHHHHHHHH
Q 028667          124 RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRH-IPVIDDKGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       124 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~-~pVv~~~~~vGiIt~~dil~~l~  187 (205)
                      ......+++++|.+.  ++++++++++.+|++.|.+++... +||+++++++|+||..|+++.+.
T Consensus        11 ~~~~~~~v~~im~~~--~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           11 HHMKVKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             TTCBHHHHTTSSCCC--CEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             hhhccccHhhcccCC--CceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHh
Confidence            345677899999985  999999999999999999999999 99999779999999999998765

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.64  E-value=8.4e-08  Score=67.63  Aligned_cols=61  Identities=28%  Similarity=0.451  Sum_probs=54.1

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcC-----CCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~-----~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ....+++++|.+.       +.++++++++.++++.|.+++     .+.+||+  |++|+++|+|+..|+++.+.
T Consensus        70 ~~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           70 TLETTIGDVMTKD-------VITIHEDASILEAIKKMDISGKKEEIINQLPVV--DKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             CSSCBHHHHSCSS-------CCCEETTSBHHHHHHHHTCC-----CCCEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             cCCcCHHHHhCCC-------cEEECCCCCHHHHHHHHHhcCCccccccEEEEE--CCCCeEEEEEEHHHHHHHHH
Confidence            3567899999976       889999999999999999999     9999999  88899999999999987653

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.64  E-value=1.1e-07  Score=67.55  Aligned_cols=60  Identities=13%  Similarity=0.282  Sum_probs=53.9

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-C--eEEEEEeHHHHHHHHHhh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-K--GMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~--~~vGiIt~~dil~~l~~~  189 (205)
                      ..+++++|.+.  +.++++++++.+|++.|.+++.+.+||+++ |  +++|+|+..|+++.+...
T Consensus         4 ~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~   66 (141)
T 2rih_A            4 AIRTSELLKRP--PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR   66 (141)
T ss_dssp             -CBGGGGCCSC--CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT
T ss_pred             ceEHHHHhcCC--CeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC
Confidence            45899999985  999999999999999999999999999997 6  999999999999987543

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.63  E-value=7.6e-08  Score=75.49  Aligned_cols=61  Identities=15%  Similarity=0.412  Sum_probs=55.5

Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHHHHHhh
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~~l~~~  189 (205)
                      ....++++|++.  ++++++++++.+|.++|.++++..+||+++   ++++|+|++.|+++++...
T Consensus        11 ~~~~v~diMt~~--vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           11 YNIQVGDIMVRD--VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SSCBTTSSSBSS--CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             CCCChHHhcCCC--CeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence            467899999985  999999999999999999999999999985   5799999999999987654

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.63  E-value=7.7e-08  Score=69.97  Aligned_cols=59  Identities=36%  Similarity=0.481  Sum_probs=54.2

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      ..+++++|.+.  ++++++++++.+|++.|.+++.+.+||+|+ |+++|+||..|+++.+..
T Consensus         4 ~~~v~dim~~~--~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            4 MIKVEDMMTRH--PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             CCBGGGTSEES--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCcHHHHhcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence            46899999885  899999999999999999999999999996 899999999999988764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.62  E-value=9.8e-08  Score=67.35  Aligned_cols=58  Identities=28%  Similarity=0.476  Sum_probs=52.5

Q ss_pred             CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHH
Q 028667          126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRA  185 (205)
Q Consensus       126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~  185 (205)
                      ....+++++|.+.  ++++++++++.+|++.|.+++.+.+||+++ |+++|+|+..|+++.
T Consensus         4 l~~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~   62 (138)
T 2yzi_A            4 DMKAPIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR   62 (138)
T ss_dssp             CTTSBGGGTCBCC--CCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             hhhhhHHHHhcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            3567899999874  999999999999999999999999999995 999999999999853

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.62  E-value=7.5e-08  Score=73.27  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=55.3

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ...+++++|.++       ++++++++++.++++.|.+++...+||+  |++|+++|+||..|++..+.
T Consensus       114 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVV--D~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          114 PHEPLISLLSED-------SRALTANTTLLDAAEAIEHSREIELPVI--DDAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             TTSBGGGGCCSS-------CCCEETTSCHHHHHHHHHTSSCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CcchHHHHhcCC-------CeEECCCCCHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHHH
Confidence            567899999876       8999999999999999999999999999  88999999999999988764

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.60  E-value=7.7e-08  Score=67.69  Aligned_cols=60  Identities=20%  Similarity=0.354  Sum_probs=54.4

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ....+++++|.+.       +.++++++++.++++.|.+++.+.+||+  | +|+++|+|+..|+++.+.
T Consensus        71 ~~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           71 VKDTQVKEIMTRQ-------VAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGGSBGGGTSBCS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             cccCCHHHhccCC-------CeEECCCCcHHHHHHHHHHhCCCEEEEE--e-CCEEEEEEEHHHHHHHHH
Confidence            3578899999886       8999999999999999999999999999  6 689999999999988654

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.59  E-value=4.8e-08  Score=71.37  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=54.2

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ....+++++|.+.       ++++.+++++.++++.|.+++.+.+||+  |+ |+++|+|+..|+++.+.
T Consensus        90 ~~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           90 SLQQSVSVAMTKN-------VVRCQHNSTTDQLMEIMTGGRFRHVPVE--EN-GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGTSBGGGTSBSS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHHTT
T ss_pred             cccCCHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence            3568899999976       8999999999999999999999999999  67 99999999999988654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.57  E-value=1.5e-07  Score=67.38  Aligned_cols=60  Identities=20%  Similarity=0.318  Sum_probs=53.6

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ....+++++|.+.       +.++.+++++.++++.|.+++.  +||+  |++|+++|+||..|+++.+..
T Consensus        84 ~~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~~~~~~~--l~Vv--d~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           84 LEEMKVEQVMKQD-------IPVLKLEDSFAKALEMTIDHPF--ICAV--NEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GGGCBGGGTCBSS-------CCEEETTCBHHHHHHHHHHCSE--EEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             HhcCCHHHHhcCC-------CceeCCCCCHHHHHHHHHhCCE--EEEE--CCCCcEEEEEEHHHHHHHHHH
Confidence            3567899999976       8999999999999999999876  9999  889999999999999987654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.56  E-value=1e-07  Score=69.23  Aligned_cols=62  Identities=21%  Similarity=0.393  Sum_probs=55.7

Q ss_pred             cccccHhHHhhh--cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCC---ceEEEEehHHHHHHHHH
Q 028667           51 FESTTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK---SVAGIITERDYLRKIIV  121 (205)
Q Consensus        51 ~~~~~v~d~m~~--~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~---~~~G~v~~~dll~~~~~  121 (205)
                      ....+++++|.+  .       ++++.+++++.+|++.|.+++.+.+||+  |++|   +++|+|+..|+++.+..
T Consensus        78 ~~~~~v~~~m~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           78 LTSVPVHIIMTRMPN-------ITVCRREDYVMDIAKHLIEKQIDALPVI--KDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TTTCBGGGTSEETTS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--EECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ccCcCHHHHHcCCCC-------cEEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCcceeEEEEEEHHHHHHHHHH
Confidence            456789999997  5       8899999999999999999999999999  6777   99999999999887653

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.55  E-value=1e-07  Score=69.03  Aligned_cols=62  Identities=21%  Similarity=0.402  Sum_probs=55.0

Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      ...+++++|.+.++++++++++++.+|++.|.+++...+||+|+ |+++|+||..|+++.+..
T Consensus        12 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   74 (159)
T 1yav_A           12 LEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG   74 (159)
T ss_dssp             TTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred             hHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence            46789999987223899999999999999999999999999996 899999999999988753

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.54  E-value=1.5e-07  Score=65.94  Aligned_cols=57  Identities=21%  Similarity=0.455  Sum_probs=52.2

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      ...+++++|.+.       ++++++++++.++++.|.+++.+.+||+  ++ |+++|+|+..|+++.
T Consensus        72 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           72 NTATAGELARDS-------IYYVDANASIQEMLNVMEEHQVRRVPVI--SE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             TTSBHHHHHTTC-------CCCEETTCCHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHT
T ss_pred             cccCHHHHhcCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHH
Confidence            467899999886       8999999999999999999999999999  66 899999999998864

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.53  E-value=1.5e-07  Score=68.18  Aligned_cols=55  Identities=16%  Similarity=0.320  Sum_probs=50.5

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      ...+++++|.+        ++++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|++
T Consensus       101 ~~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~~~Vv--d~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP--------AVFVPEGKSLTALLKEFREQRNHMAIVI--DEYGGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC--------CCEEETTSBHHHHHHHHHHTTCCEEEEE--CTTSSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC--------CEEECCCCCHHHHHHHHHhcCCeEEEEE--CCCCCEEEEEEHHHhc
Confidence            45789999965        7899999999999999999999999999  8899999999999974

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.53  E-value=1.8e-07  Score=67.76  Aligned_cols=60  Identities=18%  Similarity=0.438  Sum_probs=54.6

Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHHHHHh
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~~l~~  188 (205)
                      ...+++++|.+.  ++++++++++.+|++.|.+++.+.+||+++   |+++|+||..|+++.+..
T Consensus        11 ~~~~v~dim~~~--~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~   73 (164)
T 2pfi_A           11 HHVRVEHFMNHS--ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA   73 (164)
T ss_dssp             CSCBHHHHCBCC--CCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred             cCCCHHHHcCCC--CeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence            467899999985  899999999999999999999999999984   899999999999988754

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.48  E-value=3.3e-07  Score=66.05  Aligned_cols=60  Identities=23%  Similarity=0.388  Sum_probs=53.5

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~  122 (205)
                      ...+++++|.+.       ++++++++++.++++.|.+++.  +||+  +++|+++|+||..|+++.+...
T Consensus        81 ~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~--l~Vv--d~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           81 ETMKVEEVMNRN-------IPRLRLDDSLMKAVGLIVNHPF--VCVE--NDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             GTCBGGGTCBCC-------CCEEETTSBHHHHHHHHHHSSE--EEEE--CSSSSEEEEEEHHHHHHHHHHT
T ss_pred             cCCcHHHHhCCC-------CceecCCCcHHHHHHHHhhCCE--EEEE--cCCCeEEEEEEHHHHHHHHHHH
Confidence            467899999986       8999999999999999999877  9999  8889999999999998876543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.46  E-value=1.4e-06  Score=74.93  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             ccccHhHHhhh-cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667           52 ESTTISDILKA-KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (205)
Q Consensus        52 ~~~~v~d~m~~-~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~  130 (205)
                      ...+|+++|.+ +       +++++++.++.++++.|.+++...+||+  |++|+++|+||.+|+++.+..      ...
T Consensus       173 ~~~~V~~vM~~~~-------~vtv~~~~~l~eal~~m~~~~i~~lpVV--De~g~l~GiIT~~Dil~~~~~------p~a  237 (511)
T 3usb_A          173 YSIKISDVMTKEQ-------LITAPVGTTLSEAEKILQKYKIEKLPLV--DNNGVLQGLITIKDIEKVIEF------PNS  237 (511)
T ss_dssp             SSSBHHHHCCCCC-------CCCEETTCCHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHC------TTC
T ss_pred             CCCcHHHhcccCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--eCCCCEeeeccHHHHHHhhhc------ccc
Confidence            46789999997 4       8999999999999999999999999999  899999999999999887542      122


Q ss_pred             cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEe
Q 028667          131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVI  168 (205)
Q Consensus       131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv  168 (205)
                      +.+.+.+......+.......+.++.+.+.+.+.+.|.
T Consensus       238 ~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id  275 (511)
T 3usb_A          238 AKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLD  275 (511)
T ss_dssp             CBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEE
T ss_pred             hhhhccceeeeeeeeeccchHHHHHHHHhhccceEEec
Confidence            33333332112334334344555666777788888664

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.44  E-value=3.1e-07  Score=67.92  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=55.1

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~  122 (205)
                      ...+++++|.+.       ++++.+++++.+|++.|.+++.+.+||+  + +|+++|+||..|+++.+...
T Consensus       106 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          106 PTLKLRNILDLS-------PFTVTDLTPMEIVVDIFRKLGLRQCLVT--H-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CCEECGGGEESS-------CCEEETTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHHH
T ss_pred             cCccHHHhhCcC-------CeEeCCCCCHHHHHHHHHhCCCcEEEEE--E-CCEEEEEEEHHHHHHHHHHh
Confidence            457899999876       8999999999999999999999999999  6 89999999999999877644

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.43  E-value=2.9e-07  Score=68.43  Aligned_cols=59  Identities=20%  Similarity=0.245  Sum_probs=53.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      ....+++++|.+.       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+|+..|+++.
T Consensus        72 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Givt~~dll~~  130 (184)
T 1pvm_A           72 PDEVPIRLVMRKP-------IPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRY  130 (184)
T ss_dssp             GGGSBGGGTSBSS-------CCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTT
T ss_pred             cccCCHHHHhCCC-------CcEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHH
Confidence            3567899999975       8999999999999999999999999999  788999999999998753

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.42  E-value=4.7e-07  Score=72.26  Aligned_cols=60  Identities=23%  Similarity=0.300  Sum_probs=55.2

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ...+|+++|.+.       ++++++++++.++++.|.+++...+||+  |++|+++|+||..|++..+.
T Consensus       199 ~~~~v~~im~~~-------~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          199 DDTLIADILNER-------VISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             TTSBHHHHSBSC-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHcCCC-------CeeecCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHHHH
Confidence            467899999876       8999999999999999999999999999  88999999999999988654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.38  E-value=1.7e-07  Score=80.68  Aligned_cols=110  Identities=13%  Similarity=0.166  Sum_probs=24.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ...+|+++|.+..+     ++++++++++.++++.|.+++.+.+||+  |++|+++|+||.+|+++.+.....  .....
T Consensus       159 ~~~~V~diM~~~~~-----~~tv~~~~sl~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~~~~~~--~~d~~  229 (503)
T 1me8_A          159 TETKVSDMMTPFSK-----LVTAHQDTKLSEANKIIWEKKLNALPII--DDDQHLRYIVFRKDYDRSQVCHNE--LVDSQ  229 (503)
T ss_dssp             ----------------------------------------------------------------------CCC--CBCTT
T ss_pred             ccCcHHHHhCCCCC-----CEEEcCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEecHHHHhhhcccc--hhccc
Confidence            35678899987433     7899999999999999999999999999  889999999999999886543211  11122


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEe-eCCeEEE
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVI-DDKGMIG  175 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv-~~~~~vG  175 (205)
                      ..++..    ..++. ....+.++.|.+.+.+.++|. ++|...|
T Consensus       230 ~~l~v~----a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~  269 (503)
T 1me8_A          230 KRYLVG----AGINT-RDFRERVPALVEAGADVLCIDSSDGFSEW  269 (503)
T ss_dssp             SCBCCE----EEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHH
T ss_pred             cccccc----cccCc-hhHHHHHHHHHhhhccceEEecccCcccc
Confidence            333322    34455 555666788888898887663 3354444

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.37  E-value=3.2e-07  Score=79.38  Aligned_cols=60  Identities=23%  Similarity=0.423  Sum_probs=55.1

Q ss_pred             cCccccccccCCceEEEcCC-CcHHHHHHHHHhCCCCEEEEee--CCeEEEEEeHHHHHHHHHhh
Q 028667          128 STKVGDIMTEENKLITVSPD-TKVLRAMQLMTDNRIRHIPVID--DKGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~-~~l~~a~~~~~~~~~~~~pVv~--~~~~vGiIt~~dil~~l~~~  189 (205)
                      ..+++++|++.  +++++++ +++.+|+++|.+++++.+||++  +|+++|+||.+|+++.+...
T Consensus       383 ~~~V~diM~~~--~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~  445 (527)
T 3pc3_A          383 SLAIAELELPA--PPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM  445 (527)
T ss_dssp             TSBGGGGCCCC--CSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH
T ss_pred             CCcHHHhCcCC--CeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc
Confidence            57899999975  9999999 9999999999999999999999  48999999999999988754

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.37  E-value=3.9e-07  Score=72.35  Aligned_cols=59  Identities=25%  Similarity=0.405  Sum_probs=53.6

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ...+++++|.+.       ++++++++++.++++.|.+++...+||+  |++|+++|+||..|++..+
T Consensus       197 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          197 PRTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             TTCBSTTTSBSS-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHC
T ss_pred             CCCcHHHHhCCC-------CeEEeCCCCHHHHHHHHHhcCCCEEEEE--eCCCeEEEEEEHHHHHHHH
Confidence            456788899765       8999999999999999999999999999  8899999999999988764

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.20  E-value=2.2e-06  Score=73.10  Aligned_cols=60  Identities=25%  Similarity=0.383  Sum_probs=54.7

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      .+.+++++|.++       ++++++++++.++++.|.+++...+||+  |++|+++|+||..|+++.+.
T Consensus       217 ~~~~v~dim~~~-------~~~v~~~~~l~ea~~~m~~~~~~~lpVV--De~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          217 PRTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             TTSBGGGTSBSS-------CCCEESSSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHhCCC-------CeEEeCCCcHHHHHHHHHhcCCcEEEEE--cCCCEEEEEEehHhhHHHHH
Confidence            467899999765       8999999999999999999999999999  89999999999999987654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.93  E-value=5.9e-05  Score=64.52  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             cccHhHHhhh-cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           53 STTISDILKA-KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        53 ~~~v~d~m~~-~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      +.+++++|.+ .       ++++++++++.++++.|.+++.+.+||+  |++|+++|+||..|+++.+.
T Consensus       151 ~~~v~~im~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          151 NAPISEHMTSEH-------LVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSBTTTSCCCSC-------CCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHcCCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHHHHHHh
Confidence            4678888886 4       8899999999999999999999999999  89999999999999988654

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.93  E-value=2.3e-06  Score=75.48  Aligned_cols=63  Identities=17%  Similarity=0.196  Sum_probs=55.5

Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHH-hCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMT-DNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~-~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      ...+++++|++.+++.++++++++.++.+.|. +++.+.+||+|+ ++++|+|+.+|+++.+...
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~  515 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHV  515 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHH
Confidence            45689999994335999999999999999999 799999999996 8999999999999876543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.91  E-value=6.3e-06  Score=70.55  Aligned_cols=107  Identities=18%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~  132 (205)
                      ..+++++|.+.       ++++++++++.++++.|.+++.+.+||+  |++|+++|+||.+|+++... .. ........
T Consensus       149 ~~~v~~im~~~-------~~~v~~~~~l~eal~~m~~~~~~~lpVV--de~g~lvGiiT~~Dil~~~~-~~-~~~~~~~g  217 (486)
T 2cu0_A          149 GKLVKELMTKE-------VITVPESIEVEEALKIMIENRIDRLPVV--DERGKLVGLITMSDLVARKK-YK-NAVRDENG  217 (486)
T ss_dssp             -------------------------------------------------------------------C-CT-TCCBCTTS
T ss_pred             CCCHHHHccCC-------CeEECCcCcHHHHHHHHHHcCCCEEEEE--ecCCeEEEEEEHHHHHHhhh-cc-ccccccCC
Confidence            45678888865       8899999999999999999999999999  88999999999999887521 10 00000011


Q ss_pred             cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee--CCeEEEEE
Q 028667          133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID--DKGMIGMV  177 (205)
Q Consensus       133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~--~~~~vGiI  177 (205)
                      .++..    ..++.+ + .+.+..+.+.+.+.+ |++  .|...+++
T Consensus       218 ~~~v~----~~~~~~-~-~~~a~~l~~~gvd~l-vvdta~G~~~~~L  257 (486)
T 2cu0_A          218 ELLVA----AAVSPF-D-IKRAIELDKAGVDVI-VVDTAHAHNLKAI  257 (486)
T ss_dssp             CBCCE----EEECTT-C-HHHHHHHHHTTCSEE-EEECSCCCCHHHH
T ss_pred             ceeec----ceechh-h-HHHHHHHHHhcCCce-EEEecCCcEeehh
Confidence            12211    223333 3 555677888888876 555  25554443

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.88  E-value=1.3e-05  Score=68.56  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ...+|+++|.+..     +++++++++++.++.++|.+++...+||+  |++|+++|+||.+|+++..
T Consensus       145 ~~~~V~~vMtp~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          145 AGDTVAAIMTPKD-----KLVTAREGTPLEEMKAKLYENRIEKMLVV--DENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             cCCcHHHHhccCC-----CCEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHhhhhc
Confidence            4568999999421     18999999999999999999999999999  8999999999999988753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.83  E-value=1.6e-05  Score=68.21  Aligned_cols=58  Identities=26%  Similarity=0.424  Sum_probs=3.8

Q ss_pred             cccHhHHhhh--cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           53 STTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        53 ~~~v~d~m~~--~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ..++.++|.+  +       ++++++++++.++++.|.+++...+||+  |++|+++|+|+..|+++.+
T Consensus       154 ~~~v~~im~~~~~-------~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          154 SKKIKDLMTPREK-------LIVAPPDISLEKAKEILHQHRIEKLPLV--SKDNKLVGLITIKDIMSVI  213 (494)
T ss_dssp             ----------------------------------------------------------------CHHHH
T ss_pred             CCcHHHHhCCCCC-------CeEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHhhh
Confidence            4678899987  5       8999999999999999999999999999  8899999999999998865

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.78  E-value=1.9e-05  Score=67.74  Aligned_cols=60  Identities=17%  Similarity=0.318  Sum_probs=42.3

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      ...+++++|.+..     ++++++++.++.++++.|.+++...+||+  |++|+++|+||.+|+++.
T Consensus       147 ~~~~v~diM~p~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          147 LTKSVAAVMTPKE-----RLATVKEGATGAEVQEKMHKARVEKILVV--NDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             TTSBGGGTSEEGG-----GCCEEECC----CGGGTCC---CCCEEEE--CTTSBCCEEECCC-----
T ss_pred             CCCcHHHHhcCCC-----CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEeehHhHHHHh
Confidence            4578999999421     18899999999999999999999999999  899999999999998864

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.71  E-value=3.1e-05  Score=66.14  Aligned_cols=58  Identities=16%  Similarity=0.270  Sum_probs=0.0

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      ...+|+++|.++       +++++.+.++.+|.++|.+++...+|||  |++++++|+||.+|+.+.
T Consensus       198 ~~~~V~evMT~~-------lvt~~~~~~leeA~~iL~~~kieklpVV--d~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          198 AETPIKSVMTTE-------VVTGSSPITLEKANSLLRETKKGKLPIV--DSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             cceEhhhhcccc-------eEEecCCCCHHHHHHHHHHccccceeEE--ccCCcEEEEEEechhhhh
Confidence            357899999986       9999999999999999999999999999  899999999999998764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.45  E-value=2.6e-05  Score=67.21  Aligned_cols=58  Identities=17%  Similarity=0.326  Sum_probs=40.7

Q ss_pred             ccccHhHHhhh--cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           52 ESTTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        52 ~~~~v~d~m~~--~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      ...++.++|.+  +       ++++.+++++.++.+.|.+++...+||+  |++|+++|+|+.+|+++.
T Consensus       171 ~~~~v~~vm~~~~~-------~~tv~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          171 HTTLLSEVMTPRIE-------LVVAPAGVTLKEANEILQRSKKGKLPIV--NDCDELVAIIARTDLKKN  230 (514)
T ss_dssp             ----------CCBC-------CCCEETTCCSTTTTTHHHHHTCSCCCEE--SSSSCCC----CCCCSSC
T ss_pred             CCCCHHHHhCCCCC-------CeEECCCCCHHHHHHHHHHcCCCcccEE--CCCCeEEEEEEHHHHHHH
Confidence            34678899987  5       8999999999999999999999999999  889999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	5e-20
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-07
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	2e-14
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-14
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	8e-06
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-13
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-13
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	4e-05
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	3e-13
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	6e-13
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-12
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	9e-06
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	9e-12
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-11
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-04
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-11
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	4e-11
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	5e-11
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	0.003
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	6e-11
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	2e-10
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	4e-10
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-07
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	6e-10
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-09
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	8e-06
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	2e-09
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.001
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	8e-09
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	1e-08
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.001
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-08
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	3e-08
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	0.003
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	1e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	3e-04
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-07
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-04
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	3e-05
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	8e-04

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 79.4 bits (195), Expect = 5e-20
 Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 9/135 (6%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K  +     GI+TER
Sbjct: 2   KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLV---GILTER 54

Query: 114 DYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM 173
           D+ RK  +  +  K T+V +IMT +     V  +      M L+T+ R+RH+PV+DD  +
Sbjct: 55  DFSRKSYLLDKPVKDTQVKEIMTRQV--AYVDLNNTNEDCMALITEMRVRHLPVLDDGKV 112

Query: 174 IGMVSIGDVVRAVVS 188
           IG++SIGD+V+  +S
Sbjct: 113 IGLLSIGDLVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 129 TKVGDIMTEENK-LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVV 187
             V  ++ E+   ++ + PD  V  AMQ M  + I  + V+ D+ ++G+++  D  R   
Sbjct: 2   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSY 61

Query: 188 SEH 190
              
Sbjct: 62  LLD 64

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 65.2 bits (158), Expect = 2e-14
 Identities = 14/113 (12%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            +  D V D  ++  +H    + +   G        +      R I           + +
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMG---SRLVGIISSRDIDFLKEEEHDRFLEE 65

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
           IMT+   L+       +  A +++  ++   +P++++   ++ +++  D+ + 
Sbjct: 66  IMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN 118

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (157), Expect = 3e-14
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C     V D ++ +TQ  V ++ ++       +  +    D L  I     +  S  VG+
Sbjct: 22  CQMTTPVIDVIQMLTQGRVSSVPIIDENGY--LINVYEAYDVLGLIKGGIYNDLSLSVGE 79

Query: 134 IMTEENKL----ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
            +   +       T + + K+   M  +   R+    V+DD G ++G++++ D+++ ++
Sbjct: 80  ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (97), Expect = 8e-06
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAVVSE 189
           +  I  +   + +    T V+  +Q++T  R+  +P+ID+ G +  +    DV+  +   
Sbjct: 11  LNIITQDN--MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG 68

Query: 190 H 190
            
Sbjct: 69  I 69

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.9 bits (152), Expect = 2e-13
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
             T   VY A+    QH V A  +    E+  V  I ++ D +     +  ++    V  
Sbjct: 25  VRTTTPVYVALGIFVQHRVSA--LPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTK 82

Query: 134 IMTEEN----KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
            +   +     ++       +   +  + +  +  + V+D+   + G+VS+ D+++A+V 
Sbjct: 83  ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL 142

Query: 189 E 189
            
Sbjct: 143 T 143

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 62.1 bits (150), Expect = 2e-13
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           L      +V +A + M + +VG+LVV    +  +V G  T+ D +R++IV G        
Sbjct: 16  LGVKPSTSVQEASRLMMEFDVGSLVV--INDDGNVVGFFTKSDIIRRVIVPGLPYDIPVE 73

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
             +          + +T +   ++ M ++RI+HI + ++  ++G+ ++ D++ A    
Sbjct: 74  RIMTRNLIT---ANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRR 128

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
              +   MT++  L+ V P T V  A +LM +  +  + VI+D G +
Sbjct: 4   KAPIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNV 48

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 61.8 bits (149), Expect = 3e-13
 Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
           TT  DI+ A               +T+  A + M +H++GAL +    +   + G++T+R
Sbjct: 1   TTARDIMNAG-------VTCVGEHETLTAAAQYMREHDIGALPICG--DDDRLHGMLTDR 51

Query: 114 DYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM 173
           D + K +  G    +   G++  +      V  +  +   + +M ++++R +PVI +  +
Sbjct: 52  DIVIKGLAAGLDPNTATAGELARDSI--YYVDANASIQEMLNVMEEHQVRRVPVISEHRL 109

Query: 174 IGMVSIGDVVRAV 186
           +G+V+  D+ R +
Sbjct: 110 VGIVTEADIARHL 122

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 6e-13
 Identities = 22/168 (13%), Positives = 58/168 (34%), Gaps = 26/168 (15%)

Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
            T   D++K + +      +      TV D    +++       VV   E + + G +  
Sbjct: 2   KTLAMDVMKPR-RNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLR 60

Query: 113 RDYLR-----------------------KIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149
           RD +                           +   +  + K+ +I+       TV+  T 
Sbjct: 61  RDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS--PFTVTDLTP 118

Query: 150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRL 197
           +   + +     +R   V  +  ++G+++  DV++ +     ++ + +
Sbjct: 119 MEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMANQDPDSI 166

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 59.9 bits (144), Expect = 2e-12
 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 13/129 (10%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI-------IVQGRSS 126
                T+ DA   M   ++  + +V   ++  + GI+++RD L                +
Sbjct: 15  LLRTHTLNDAKHLMEALDIRHVPIVDANKK--LLGIVSQRDLLAAQESSLQRSAQGDSLA 72

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
             T + ++M  +    +V+P   +  +   M  ++I  +PV+    ++G+++  D V   
Sbjct: 73  FETPLFEVMHTDV--TSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA 130

Query: 187 VS--EHREE 193
           ++  E +EE
Sbjct: 131 INLLELQEE 139

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 41.8 bits (97), Expect = 9e-06
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPV-IDDKGMIGMVSIGDVVRAVVS 188
           KV D+MT      T+     +  A  LM    IRH+P+   +K ++G+VS  D++ A  S
Sbjct: 3   KVEDMMTRH--PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES 60

Query: 189 EHR 191
             +
Sbjct: 61  SLQ 63

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.5 bits (140), Expect = 9e-12
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 20/134 (14%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL--------------RKI 119
              D  + + V  + +  V   V V    +     +I     L                I
Sbjct: 17  VEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG--MIPVMHLLKVSGFHFFGFIPKEELI 74

Query: 120 IVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVS 178
               +   +    +IM      + V  DT +  A++LM DN I+ +PV+D+KG ++G ++
Sbjct: 75  RSSMKRLIAKNASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLN 131

Query: 179 IGDVVRAVVSEHRE 192
             +++ A+     +
Sbjct: 132 SLEILLALWKGREK 145

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 57.6 bits (138), Expect = 1e-11
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
                 ++ D +++  ++  G+ VVVK G +  +       + + +              
Sbjct: 12  TIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKV----- 66

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
                E  L+T+SP   +  A + M  N +  + V +D  +IG++S  D++RA
Sbjct: 67  -WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRA 118

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMV 177
           +V D+M  +  + T+     +   ++   +N      V+ +   +G+V
Sbjct: 1   RVEDVMVTD--VDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIV 46

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.3 bits (140), Expect = 1e-11
 Identities = 23/158 (14%), Positives = 57/158 (36%), Gaps = 24/158 (15%)

Query: 51  FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
            +S    D++    K      +   T   V  A  ++  + V A  +    +Q    G++
Sbjct: 10  MKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS-FVGML 63

Query: 111 TERDYLRKIIVQGRSSKST--------------KVGDIMTEENKLITVSPDTKVLRAMQL 156
           T  D++  +    +S+                        +    + +SP+  +  A+  
Sbjct: 64  TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISPNASLFDAVSS 121

Query: 157 MTDNRIRHIPVIDDK--GMIGMVSIGDVVRAVVSEHRE 192
           +  N+I  +PVID +    + +++   +++ +     E
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 159

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 56.9 bits (136), Expect = 4e-11
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + +  VYD +K + + N+ A+ +V       +  +    D +  I     S+    VG+
Sbjct: 17  ASMETKVYDVIKMLAEKNISAVPIVNSEGT--LLNVYESVDVMHLIQDGDYSNLDLSVGE 74

Query: 134 IMTEEN----KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
            + +       + T     ++      +  +R+  + V+D+   + G++S+ D++  ++ 
Sbjct: 75  ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY 134

Query: 189 EHREE 193
           +    
Sbjct: 135 DKTTT 139

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 56.6 bits (135), Expect = 5e-11
 Identities = 14/137 (10%), Positives = 42/137 (30%), Gaps = 22/137 (16%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
              +  T  D +  + Q  +     V   +  ++ G I   +    +  +  + +     
Sbjct: 23  SIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFE 82

Query: 133 DIMTEEN----------------------KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
           +++T E                           +   T + +   L +   +    V   
Sbjct: 83  EMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM 142

Query: 171 KGMIGMVSIGDVVRAVV 187
             ++G+V++ ++  A+ 
Sbjct: 143 GKLVGVVALAEIQAAIE 159

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 123 GRSSKST-KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM 173
             ++K   +VGDIM  +  + +++  +     + ++   +++  P +D    
Sbjct: 4   SSANKYNIQVGDIMVRD--VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDT 53

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.1 bits (134), Expect = 6e-11
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + TV+DAVK M ++++    +V   +  +  G+++ER  +++ I + +      +  
Sbjct: 16  VNWNTTVFDAVKIMNENHLYG--LVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRL 73

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHRE 192
           +M +      V  D  V      +++N +    V+DD G ++G+V++ D+ R +      
Sbjct: 74  VMRKPI--PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASIT 131

Query: 193 EL 194
           ++
Sbjct: 132 DI 133

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
           +V  IM       TV+ +T V  A+++M +N +  + V DD G  
Sbjct: 4   RVEKIMNSN--FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGND 46

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 54.5 bits (130), Expect = 2e-10
 Identities = 24/116 (20%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
            + T +  V +A + M ++ +  + +V+    + + GIIT RD           S     
Sbjct: 8   FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPIS----- 62

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
                    L+T +  T +  A +++ ++RI  +P++D+ G + G+++I D+ + +
Sbjct: 63  --EHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 116

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 54.2 bits (129), Expect = 4e-10
 Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 30/142 (21%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQK---------------------------SV 106
                 +  A+K++   N  AL VV                                 S 
Sbjct: 17  VWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSE 76

Query: 107 AGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIP 166
              I E               +  V +IMT +   I  +P   V      M    I  +P
Sbjct: 77  EEWILESHPTLLFEKFELQLPNKPVAEIMTRDV--IVATPHMTVHEVALKMAKYSIEQLP 134

Query: 167 VIDDKG-MIGMVSIGDVVRAVV 187
           VI  +G +IG++   D+++ +V
Sbjct: 135 VIRGEGDLIGLIRDFDLLKVLV 156

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGM 176
           K  ++         +  V   T +  A++ +  +    +PV+D +G +  
Sbjct: 2   KGVEIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVG 49

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 53.3 bits (127), Expect = 6e-10
 Identities = 28/130 (21%), Positives = 62/130 (47%), Gaps = 13/130 (10%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPG---EQKSVAGIITERDYLRKIIVQGRSSKS 128
           +      TV + ++ + +    A  +       E+  + G+++ RD          +   
Sbjct: 12  VAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL-------IVADPR 64

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
           T+V +IM  +   + V  DT      +LM D     +PV+D++G ++G+V++ DV+  + 
Sbjct: 65  TRVAEIMNPKV--VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE 122

Query: 188 SEHREELNRL 197
           +E  E++++L
Sbjct: 123 AEATEDIHKL 132

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           +  T D  + D  K MT+ N+G+++VV         GIITERD ++ I          + 
Sbjct: 15  ISVTKDAKLNDIAKVMTEKNIGSVIVVD---GNKPVGIITERDIVKAIGKGKSLETKAEE 71

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
               +          D+ +  A+ LM    IRH+PV+DDKG + G++SI D+ RA+ 
Sbjct: 72  FMTASLITI----REDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID 124

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 41.8 bits (97), Expect = 8e-06
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186
           +   V + M  +  +I+V+ D K+    ++MT+  I  + V+D    +G+++  D+V+A+
Sbjct: 2   EEEIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAI 59

Query: 187 VSEH 190
               
Sbjct: 60  GKGK 63

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVV-----VKPGEQKSVAGIITERDYLRKIIVQGRSSKS 128
            + +D +  A K + +  +G ++V           + +   +                 +
Sbjct: 14  LSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHIST 73

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
           T + D MT     +TV   +    A+ +M       +PV+D     +G+V+  + +   
Sbjct: 74  TPIIDYMTPNP--VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY 130

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
            +  +M +      +S + ++  A + + +  I  I V ++
Sbjct: 2   NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE 40

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.9 bits (118), Expect = 8e-09
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                TV + +  M Q+     +V     +    G++ + D L   +             
Sbjct: 14  VEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLDLDLDSSV--------- 62

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSE 189
                     V  +  +  A+ L  +++  ++PV+D++  + G VS+ D + A++  
Sbjct: 63  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA 119

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
           KV   +T++     V     V   +  M   +     V D +G  
Sbjct: 2   KVKKWVTQD--FPMVEESATVRECLHRMRQYQTNECIVKDREGHF 44

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           +  T   T   A++   ++ V +  V           +  E   +  I V+       + 
Sbjct: 12  VTITLPATRNYALELFKKYKVRSFPV-----------VNKEGKLVGIISVKRILVNPDEE 60

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEH 190
              M  +  +  V  +  + +A +LM +   R + V+D KG  +G++++GD++R   ++ 
Sbjct: 61  QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS 120

Query: 191 RE 192
            +
Sbjct: 121 EK 122

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGM 176
           +V  IMT+    +T++       A++L    ++R  PV++ +G +  
Sbjct: 2   RVKTIMTQN--PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVG 46

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 49.0 bits (116), Expect = 2e-08
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVK---PGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           + TV  A+  +      A  +       ++  + G+I+ RD +            T + D
Sbjct: 17  NQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDD-------TLIAD 69

Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSE 189
           I+ E   +I+V          Q + D     +PV D    ++G+V++ D++  +  E
Sbjct: 70  ILNER--VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE 124

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           +      T+ +    + ++ VG  V+      K    +++ERD LR +  +         
Sbjct: 12  VSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG---- 67

Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA 185
              M   N  ITV     V  A + M  + IRH+ V++  G ++G++SI D+   
Sbjct: 68  -PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 3/50 (6%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSI 179
           +  +++      +++     +      +  NR+    +         V++
Sbjct: 2   RTSELLKRP--PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV 49

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD---YLRKIIVQGRSSKST 129
               +  +  AVK M +     L V+    +      +             +        
Sbjct: 14  TIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGK 73

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVS 188
            V D+M      +T+     V RA   M   RI  + +++    + G+++  D++ A+  
Sbjct: 74  VVKDVMVTNL--VTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 131

Query: 189 EHREE 193
               E
Sbjct: 132 ILVME 136

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGM 173
            V   M+ +  + T+  + ++ +A++LM     R +PVIDD   
Sbjct: 3   PVKVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNK 44

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 23/143 (16%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-------- 124
                  V  ++  +T +N+ +  +    E    AG++T  D++  I    +        
Sbjct: 34  VFDVTLFVKTSLSLLTLNNIVSAPLW-DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAI 92

Query: 125 --------SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG---- 172
                            I     + I V P   ++ A   M+ +R R IP+ID  G    
Sbjct: 93  AEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS 152

Query: 173 --MIGMVSIGDVVRAVVSEHREE 193
             ++ +++   +++ +    +E 
Sbjct: 153 EMIVSVLTQYRILKFISMNCKET 175

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 111 TERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
           T++  L++I       +S    D++    +LI       V  ++ L+T N I   P+ D 
Sbjct: 5   TQKGALKEIQ---AFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS 61

Query: 171 KGMIGMVSI 179
           +       +
Sbjct: 62  EANKFAGLL 70

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 14/115 (12%), Positives = 33/115 (28%), Gaps = 3/115 (2%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
                + +  A+  +T+    A+ V+ P  +    G+I     +  I    R        
Sbjct: 16  HVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLH--GLIGTNMIMNSIFGLERIEFEKLDQ 73

Query: 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
             + E                           + V +D+    G+ +   V++ +
Sbjct: 74  ITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKEL 128

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.2 bits (82), Expect = 8e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDK-GMIGMVSIGDVVRAVV 187
             VG  M E +K+  V     +  A+ ++T      IPV+D    + G++    ++ ++ 
Sbjct: 2   ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF 61

Query: 188 SEH 190
              
Sbjct: 62  GLE 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.92
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.91
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.91
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.9
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.9
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.9
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.9
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.89
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.89
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.89
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.89
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.88
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.87
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.86
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.86
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.86
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.85
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.84
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.84
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.83
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.82
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.82
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.82
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.79
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.78
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.02
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.94
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.92
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.89
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.88
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.87
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.84
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.82
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.8
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.79
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.78
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.78
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.76
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.73
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.73
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.71
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.67
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.62
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.6
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.6
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.57
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.55
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.54
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.52
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.5
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.49
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	92.58
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	91.32

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=3.6e-25  Score=155.07  Aligned_cols=122  Identities=25%  Similarity=0.533  Sum_probs=111.4

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      .+++|+|.++       ++++.+++++.+|++.|.+++++.+||+  |++|+++|+||.+|++..++..+.......+++
T Consensus         1 tt~~diM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~   71 (123)
T d1y5ha3           1 TTARDIMNAG-------VTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGE   71 (123)
T ss_dssp             CCHHHHSEET-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHH
T ss_pred             CCHHHhcCCC-------CcEECCcCcHHHHHHHHHHcCCCceEEE--eccchhhhhhhhhhHhhhhhhcCCCcccceEEE
Confidence            4799999987       8999999999999999999999999999  889999999999998877766665555667899


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHH
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV  186 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l  186 (205)
                      +|.+.  +.++++++++.+|++.|.+++++++||+++|+++|+||+.||++.+
T Consensus        72 im~~~--~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          72 LARDS--IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL  122 (123)
T ss_dssp             HHTTC--CCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTC
T ss_pred             Eeecc--ceeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHhhC
Confidence            99884  9999999999999999999999999999999999999999999863

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.91  E-value=1.5e-23  Score=149.72  Aligned_cols=127  Identities=18%  Similarity=0.294  Sum_probs=113.0

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC-------CCC
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-------RSS  126 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~-------~~~  126 (205)
                      ++|+|+|.++       +.++++++++.+|++.|.+++++.+||+  |++|+++|+|+.+|+++.+....       ...
T Consensus         2 i~v~diM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~lpVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~   72 (139)
T d2o16a3           2 IKVEDMMTRH-------PHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDSLA   72 (139)
T ss_dssp             CBGGGTSEES-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC---------
T ss_pred             EEHHHhCcCC-------CeEECCcCCHHHHHHHHHHcCCCeeeee--cccccccccccHHHHHHHHHhhhhhhhcccccc
Confidence            5799999986       8999999999999999999999999999  88999999999999987664421       123


Q ss_pred             CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhhh
Q 028667          127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHR  191 (205)
Q Consensus       127 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~~  191 (205)
                      ...+++++|++.  +.++++++++.+|++.|.+++.+.+||+|+|+++|+||+.|+++++.....
T Consensus        73 ~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~~~~~~  135 (139)
T d2o16a3          73 FETPLFEVMHTD--VTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLE  135 (139)
T ss_dssp             CCCBHHHHSCSC--EEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred             cccchhHhhccc--cccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHHHHHHh
Confidence            456899999884  999999999999999999999999999999999999999999999987654

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=1.3e-23  Score=148.74  Aligned_cols=125  Identities=28%  Similarity=0.478  Sum_probs=114.0

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      .+|+++|.++       ++++++++|+.+|++.|.+++.+.+||+  |++|+++|+|+..|+++.+...+. ....++++
T Consensus         5 ~pV~~im~~~-------~~~v~~~~t~~~a~~~m~~~~~~~~~Vv--d~~~~~~Giit~~di~~~~~~~~~-~~~~~v~~   74 (132)
T d2yzia1           5 APIKVYMTKK-------LLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVER   74 (132)
T ss_dssp             SBGGGTCBCC-------CCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGG
T ss_pred             CcHHHHcCCC-------CeEECCcCcHHHHHHHHHHcCCcEEEEe--cccceeeeeeeHHHHHHHHhhccC-ccceeEee
Confidence            4799999986       9999999999999999999999999999  899999999999999877655443 35678999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                      +|.+.  +.++++++++.++++.|.+++++++||+++|+++|+||..|+++++.+..
T Consensus        75 im~~~--~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1          75 IMTRN--LITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             TCBCS--CCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred             ccccc--ccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHHH
Confidence            99985  99999999999999999999999999999999999999999999987764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=1e-23  Score=151.18  Aligned_cols=125  Identities=22%  Similarity=0.420  Sum_probs=114.4

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      ++|+|+|.++       +.++++++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|+++.+...+......++++
T Consensus         3 m~v~dim~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~~V~--d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~   73 (142)
T d1pvma4           3 MRVEKIMNSN-------FKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRL   73 (142)
T ss_dssp             CBGGGTSBTT-------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGG
T ss_pred             EEHHHhCCCC-------CcEECCcCcHHHHHHHHHHCCCceEeee--ccCCcccceEEeechhhhhhhhccccccccccc
Confidence            5799999987       9999999999999999999999999999  889999999999999887766655555678999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +|.+.  ++++++++++.+|++.|.+++++++||+|+ |+++|+||+.||++.+.+.
T Consensus        74 im~~~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4          74 VMRKP--IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             TSBSS--CCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHH
T ss_pred             ccccc--cccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhh
Confidence            99884  999999999999999999999999999997 8999999999999987654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.90  E-value=2.7e-23  Score=146.19  Aligned_cols=123  Identities=37%  Similarity=0.661  Sum_probs=110.6

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccc
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~i  134 (205)
                      +|+++|..+.+    +++++++++|+.+|++.|.+++.+.+||+  + +++++|+||.+|+++.+...+......+++++
T Consensus         3 tV~dim~~k~~----~v~~i~~~~tl~~a~~~m~~~~~~~vpV~--~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~i   75 (127)
T d2rc3a1           3 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEI   75 (127)
T ss_dssp             BHHHHHHHHCC----CCCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGT
T ss_pred             cHHHHHccCCC----ccEEECCcCcHHHHHHHHHHcCCCEEEEE--E-CCeEEEEEEccchhhhhhhhcccccceeEeee
Confidence            79999987432    28999999999999999999999999999  5 68999999999998877665555567789999


Q ss_pred             cccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHH
Q 028667          135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV  186 (205)
Q Consensus       135 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l  186 (205)
                      |.+.  +.++++++++.+|++.|.+++++++||+++|+++|+||..|+++++
T Consensus        76 m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          76 MTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             SBCS--CCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             ccce--eEEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHH
Confidence            9985  9999999999999999999999999999999999999999999986

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.90  E-value=2.5e-23  Score=146.35  Aligned_cols=118  Identities=22%  Similarity=0.401  Sum_probs=107.6

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhc-----CCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~-----~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      +++.+|.++       ++++++++|+.+|++.|+++     ..+.+||+  |++|+++|+++.++++.       .....
T Consensus         2 taG~iM~~d-------~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv--d~~~~l~G~v~~~~l~~-------~~~~~   65 (127)
T d2ouxa2           2 TAGAIMTTE-------FVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIV-------NDDDT   65 (127)
T ss_dssp             BHHHHCBSC-------CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTT-------SCTTS
T ss_pred             ChhHhCCCC-------cEEECCCCcHHHHHHHhHhhcccccceeeeEEE--ecCCeEEEEEEeecccc-------ccccE
Confidence            789999997       99999999999999999876     36899999  89999999999999764       34578


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      +++++|.+.  ++++++++++.+|++.|.+++++.+||+|+ |+++|+||..|+++.+.++.
T Consensus        66 ~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~eea  125 (127)
T d2ouxa2          66 LIADILNER--VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  125 (127)
T ss_dssp             BHHHHSBSC--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             EhhhhccCC--CccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHHh
Confidence            999999985  999999999999999999999999999986 99999999999999987664

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=7e-24  Score=152.41  Aligned_cols=128  Identities=23%  Similarity=0.446  Sum_probs=115.3

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcC-----CCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~-----~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~  129 (205)
                      +++++|+++       ++++++++|+.+|++.|++++     ...+||+  |++|+++|+++.+|++.       .....
T Consensus         2 taG~iM~~~-------~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv--d~~~~l~G~v~~~dl~~-------~~~~~   65 (144)
T d2yvxa2           2 EAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIV-------ADPRT   65 (144)
T ss_dssp             SSGGGCBSC-------CCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEB--CTTCBBCCBCBHHHHTT-------SCTTC
T ss_pred             CcccccCCC-------CEEECCCCcHHHHHHHHHHhcccccceeeeEEe--cCCCCEecccchhhhhh-------ccccc
Confidence            689999997       999999999999999998763     6789999  89999999999999764       23567


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHhh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNAF  200 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~~  200 (205)
                      ++.++|.+.  ++++++++++.+|++.|.++++.++||+|+ |+++|+||.+|+++.+.++..+...++.++
T Consensus        66 ~v~~im~~~--~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~~ed~~~~~gv  135 (144)
T d2yvxa2          66 RVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDIHKLGAV  135 (144)
T ss_dssp             BSTTTSBSS--CCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHHHHHHHTSSSC
T ss_pred             chHHhcccC--CccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHhHHHHHHhcCC
Confidence            899999985  999999999999999999999999999997 899999999999999999988877766543

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=7.4e-23  Score=142.52  Aligned_cols=119  Identities=25%  Similarity=0.385  Sum_probs=108.0

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccc
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~i  134 (205)
                      +|+|+|.++       ++++++++|+.+|++.|.+++.+.+||+  + +|+++|+||.+|+++.+.... .....++.++
T Consensus         1 kV~diM~~~-------~~~v~~~~sl~ea~~~~~~~~~~~~~V~--~-~~~~~Gvit~~Di~~~l~~~~-~~~~~~v~~~   69 (120)
T d1pbja3           1 RVEDVMVTD-------VDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIAEGD-DLAEVKVWEV   69 (120)
T ss_dssp             CHHHHCBCS-------CCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHHHTC-CTTTSBHHHH
T ss_pred             ChHHhCCCC-------CeEECCcCcHHHHHHHHHHcCceEEEEE--e-CCcEEEEEEeeeccccccccc-cccceeEeee
Confidence            589999987       8999999999999999999999999998  4 489999999999888766554 4457789999


Q ss_pred             cccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHH
Q 028667          135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV  186 (205)
Q Consensus       135 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l  186 (205)
                      |.++  ++++++++++.+|++.|.+++.+++||+++|+++|+||..|++++.
T Consensus        70 m~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          70 MERD--LVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  119 (120)
T ss_dssp             CBCG--GGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             cccc--cccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhcC
Confidence            9885  9999999999999999999999999999999999999999999874

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.89  E-value=8.1e-23  Score=143.68  Aligned_cols=124  Identities=36%  Similarity=0.561  Sum_probs=111.2

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v  131 (205)
                      ++.+|+++|.++       ++++++++++.+|.+.|.+++.+.+||+  + +|+++|+++.+|+++.+....  ....++
T Consensus         2 ~~~~V~d~m~~~-------~v~v~~~~tl~~a~~~m~~~~~~~~pV~--d-~~~~~Givt~~dl~~~~~~~~--~~~~~v   69 (127)
T d2ef7a1           2 EEEIVKEYMKTQ-------VISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIGKGK--SLETKA   69 (127)
T ss_dssp             CCCBGGGTSBCS-------CCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTTC--CTTCBG
T ss_pred             CccCHHHhCCCC-------CeEECCcCcHHHHHHHHHHcCCceEEee--c-ccchhhhcchhHHHHHHHhhc--cccchh
Confidence            567899999986       9999999999999999999999999999  4 478999999999887665432  346789


Q ss_pred             ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      .++|.+.  +.++++++++.+|++.|.+++++++||+++ |+++|+||+.|+++++.+.
T Consensus        70 ~~~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~~  126 (127)
T d2ef7a1          70 EEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (127)
T ss_dssp             GGTSEEC--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hhhhhhh--ccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhh
Confidence            9999885  999999999999999999999999999987 8999999999999998753

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=6.6e-24  Score=148.37  Aligned_cols=119  Identities=18%  Similarity=0.334  Sum_probs=90.6

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      ++|+++|.++       ++++++++++.+|++.|.+++.+.+||+  |++|+++|+|+.+|++..       .....+.+
T Consensus         1 m~v~diM~~~-------~v~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~G~it~~dl~~~-------~~~~~~~~   64 (122)
T d2yzqa2           1 MRVKTIMTQN-------PVTITLPATRNYALELFKKYKVRSFPVV--NKEGKLVGIISVKRILVN-------PDEEQLAM   64 (122)
T ss_dssp             CBHHHHSEES-------CCCEESSCC------------CCEEEEE--CTTCCEEEEEESSCC-----------------C
T ss_pred             CCcccccCCC-------CEEECCcCcHHHHHHHHHHcCCcEEEEE--eccccchhhhhcchhhhh-------hcccchhh
Confidence            4799999986       9999999999999999999999999999  899999999999998753       34568999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      +|.++  ++++++++++.+|++.|.+++.+++||+|+ |+++|+||++|+++++.++.
T Consensus        65 ~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~~  120 (122)
T d2yzqa2          65 LVKRD--VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS  120 (122)
T ss_dssp             CCBSC--CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC
T ss_pred             ccccc--eeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhHh
Confidence            99885  999999999999999999999999999997 99999999999999876654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.2e-22  Score=141.71  Aligned_cols=119  Identities=17%  Similarity=0.286  Sum_probs=109.2

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      ++|+++|.++       ++.+++++|+.+|++.|.+.+.+.+||+  |++|+++|+++.+|+++       .....++.+
T Consensus         1 m~v~~~m~~~-------~~~v~~~~tv~ea~~~m~~~~~~~v~Vv--d~~~~~~Gii~~~dl~~-------~~~~~~v~~   64 (121)
T d1vr9a3           1 MKVKKWVTQD-------FPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLD-------LDLDSSVFN   64 (121)
T ss_dssp             CBGGGGCBSC-------SCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTT-------SCTTSBSGG
T ss_pred             CCchhhhcCC-------CeEECCCCCHHHHHHhhhhcCcEEEEEE--eCCceeEEEeehhhhhh-------hhccccccc
Confidence            4789999987       9999999999999999999999999999  89999999999999864       234678999


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      +|...  ++++++++++.++++.|.+++...+||+|+ |+++|+||..|+++++.+..
T Consensus        65 ~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          65 KVSLP--DFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             GCBCT--TCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             cccCc--cEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence            99985  889999999999999999999999999987 89999999999999987653

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=1.8e-22  Score=142.83  Aligned_cols=125  Identities=14%  Similarity=0.234  Sum_probs=109.2

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC----CCCcC
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SSKST  129 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~----~~~~~  129 (205)
                      .+|+++|.+..+     ++++.++.++.+|++.|.+++++++||+  |++|+++|+++.+|+++.+.....    .....
T Consensus         2 ~tv~~~mip~~~-----v~~v~~~~tl~~a~~~m~~~~~s~~pVv--d~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~   74 (132)
T d1yava3           2 ATVGQFMIEADK-----VAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI   74 (132)
T ss_dssp             CBHHHHSEEGGG-----SCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTS
T ss_pred             CCHHHccccccc-----eEEEcCCCCHHHHHHHHHhhCCCceEEe--ecccccccEEEcchhHHHhhccccccccccccc
Confidence            589999987654     8999999999999999999999999999  888999999999999887754322    12356


Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      +++++|.+.  ++++++++++.+++..|.+++  .+||+|+ |+++|+||++|+++++.+.
T Consensus        75 ~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          75 TVEEVMLTD--IPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             BHHHHSBCS--CCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccccccccc--ccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            789999884  999999999999999998764  5999987 9999999999999998764

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=3.8e-22  Score=142.43  Aligned_cols=128  Identities=20%  Similarity=0.226  Sum_probs=113.2

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC-----CCCCc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-----RSSKS  128 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~-----~~~~~  128 (205)
                      .+|+++|.++       ++++++++|+.+|++.|.+++++.+||+  +++++++|+++..|+++.+....     .....
T Consensus         2 ~~V~~iMt~~-------v~~v~~~~tl~~a~~~m~~~~~~~ipVv--~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~   72 (141)
T d3ddja1           2 FPVKVFMSTK-------VQTIYKEVRLDQAVKLMLRRGFRRLPVI--DDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYG   72 (141)
T ss_dssp             CBHHHHSBCS-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHT
T ss_pred             EeeHHhCcCC-------CeEEcCcCcHHHHHHHHHHcCCCeeecc--cccCccccccccccchhhhhccccccccccccC
Confidence            4799999997       9999999999999999999999999999  89999999999999887664321     11235


Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhH
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHRE  192 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~  192 (205)
                      .+++++|.+.  ++++++++++.++++.|.+++.+++||+|+ |+++|+||++|+++.+.+....
T Consensus        73 ~~v~~im~~~--~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~~~  135 (141)
T d3ddja1          73 KVVKDVMVTN--LVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVM  135 (141)
T ss_dssp             CBHHHHSBCC--CCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCHHHHhCcc--cccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHHhh
Confidence            6899999985  999999999999999999999999999987 9999999999999999876644

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=5.5e-22  Score=143.90  Aligned_cols=125  Identities=23%  Similarity=0.336  Sum_probs=108.1

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHc--------
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ--------  122 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~--------  122 (205)
                      |++.+|.++|.++       ++++.+++++.+|++.|.+++++++||+  |++|+++|+||..|+++.+...        
T Consensus         1 ~~~~~v~~~m~r~-------v~~v~~~~~l~~a~~~m~~~~~~~lPVv--d~~~~lvG~it~~Dl~~~~~~~~~~~~~~~   71 (156)
T d2yzqa1           1 YKGVEIEPYYQRY-------VSIVWEGTPLKAALKALLLSNSMALPVV--DSEGNLVGIVDETDLLRDSEIVRIMKSTEL   71 (156)
T ss_dssp             GGGCBSTTTSBSC-------CCCEETTSBHHHHHHHHHTCSSSEEEEE--CTTSCEEEEEEGGGGGGCGGGCC-------
T ss_pred             CCCCCHHHHhcCC-------CeEECCcCcHHHHHHHHHHcCCCEEEEE--eCCCCceeEEeeeechhhhccccccccccc
Confidence            4678999999987       9999999999999999999999999999  8999999999999975432110        


Q ss_pred             ---------------------CCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHH
Q 028667          123 ---------------------GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIG  180 (205)
Q Consensus       123 ---------------------~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~  180 (205)
                                           .......++.++|.+.  +.++++++++.++++.|.+++.+++||+|+ |+++|+||++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~--~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~  149 (156)
T d2yzqa1          72 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRD--VIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDF  149 (156)
T ss_dssp             -------------------------CCCBGGGTCBSS--CCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHH
T ss_pred             ccchhhhhhhhhhhhhhHHHhhhcccCCEeehhcccC--ceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHH
Confidence                                 0112355789999885  999999999999999999999999999997 8999999999


Q ss_pred             HHHHHH
Q 028667          181 DVVRAV  186 (205)
Q Consensus       181 dil~~l  186 (205)
                      ||++++
T Consensus       150 Dil~~l  155 (156)
T d2yzqa1         150 DLLKVL  155 (156)
T ss_dssp             HHGGGG
T ss_pred             HHHHHh
Confidence            999875

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.86  E-value=1.8e-21  Score=141.34  Aligned_cols=127  Identities=11%  Similarity=0.115  Sum_probs=108.5

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC--------
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG--------  123 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~--------  123 (205)
                      .+++|+|+|.++       ++++++++|+.+|+++|.+++++++||+++++++.++|+++..|++..+....        
T Consensus         9 ~~~~V~diM~~~-------~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~   81 (160)
T d2d4za3           9 YNIQVGDIMVRD-------VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPF   81 (160)
T ss_dssp             SSCBTTSSSBSS-------CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCC
T ss_pred             cceEHHHhcCCC-------CeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccch
Confidence            378999999986       99999999999999999999999999994335578999999999877664211        


Q ss_pred             ----------------CCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHH
Q 028667          124 ----------------RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       124 ----------------~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~  187 (205)
                                      .......+.++|.+.  +.++++++++.+|+++|.+++++++||+++|+++|+||++||++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          82 EEMLTLEEIYRWEQREKNVVVNFETCRIDQS--PFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             CSCCBHHHHHHHHHHHTTCBCCTTSSCEECC--SCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             hhccccchhhhhhhhhcccccceeeecccCC--CEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHHHhC
Confidence                            011233456788885  99999999999999999999999999999999999999999999875

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-20  Score=138.81  Aligned_cols=141  Identities=16%  Similarity=0.240  Sum_probs=110.7

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHc-----------
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ-----------  122 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~-----------  122 (205)
                      ..++|+|.+...... =.+.+.+++|+.+|.++|.+++++.+||++++++++++|+|+.+|++..+...           
T Consensus         3 ~~a~DiM~p~~~~~~-~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPL-LTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCC-CCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCc-eEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            568999987532100 02446788999999999999999999999545678999999999998776421           


Q ss_pred             ------------CCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          123 ------------GRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       123 ------------~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                                  .......+++++|.+.  +.++++++++.+++++|.+++.+++||+++|+++|+||+.|+++++.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiIt~~Dil~~l~~~~  159 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLS--PFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMA  159 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESS--CCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHHHC
T ss_pred             hhhhcccchhhhhccccccchhhhccCC--CEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence                        0011234589999985  99999999999999999999999999999999999999999999998877


Q ss_pred             hHHHHHH
Q 028667          191 REELNRL  197 (205)
Q Consensus       191 ~~~~~~l  197 (205)
                      .++.+++
T Consensus       160 ~~~~~~~  166 (169)
T d2j9la1         160 NQDPDSI  166 (169)
T ss_dssp             C------
T ss_pred             cCCcccc
Confidence            7665543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.85  E-value=1.2e-20  Score=132.22  Aligned_cols=109  Identities=24%  Similarity=0.432  Sum_probs=93.5

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC--CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT  148 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~--~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~  148 (205)
                      ++++++++|+.+|+++|.+++++++||+  |+  +++++|+||.+|+++.      .....+....|... +++++++++
T Consensus         7 pvtv~~~~tv~~a~~~m~~~~~~~~pVv--D~~~~~~lvGivt~~Di~~~------~~~~~~~~~~~~~~-~~~~~~~~~   77 (126)
T d1zfja4           7 PFFLTPEHKVSEAEELMQRYRISGVPIV--ETLANRKLVGIITNRDMRFI------SDYNAPISEHMTSE-HLVTAAVGT   77 (126)
T ss_dssp             CCCBCSSSBHHHHHHHHHHTTCSEEEEE--SCTTTCBEEEEEEHHHHHHC------SCSSSBTTTSCCCS-CCCCEETTC
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcEEEE--eeccCCeEEEEeEHHHHHHh------hccCCceeeeeecc-ceeecCCCC
Confidence            8899999999999999999999999999  55  7899999999998653      22233444444332 488899999


Q ss_pred             cHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          149 KVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       149 ~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      ++.+|+++|.+++++++||+++ |+++|+||+.|+++++..
T Consensus        78 ~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          78 DLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            9999999999999999999987 899999999999998764

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.84  E-value=1.1e-20  Score=133.15  Aligned_cols=123  Identities=23%  Similarity=0.297  Sum_probs=103.7

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~  133 (205)
                      ++|+|+|.++       ++++++++|+.+|++.|.+++.+++||++.|++++++|+++..++++.+....  ........
T Consensus         1 ~~V~dim~~~-------~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~--~~~~~~~~   71 (131)
T d2riha1           1 IRTSELLKRP-------PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL--DLDGPAMP   71 (131)
T ss_dssp             CBGGGGCCSC-------CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC--CTTSBSGG
T ss_pred             CCHHHhccCC-------CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc--cccccccc
Confidence            4799999986       99999999999999999999999999995455689999999999877654432  12333444


Q ss_pred             ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      .+.+   ++++.+++++.+|++.|.+++++++||+|+ |+++|+||..|+++.+..
T Consensus        72 ~~~~---~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          72 IANS---PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             GCBC---CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             cccc---ceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            4433   788999999999999999999999999987 899999999999987643

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=9.9e-21  Score=135.55  Aligned_cols=124  Identities=20%  Similarity=0.307  Sum_probs=105.1

Q ss_pred             cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC-----------
Q 028667           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-----------  123 (205)
Q Consensus        55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~-----------  123 (205)
                      .|.++|..+       ++++.+++++.+|++.|.+++++.+||+  |++|+++|+|+..|+++.+....           
T Consensus         5 ~v~~~m~~~-------p~~v~~~~~v~~a~~~m~~~~~~~ipVv--d~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~   75 (145)
T d1o50a3           5 DVCKLISLK-------PTVVEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIR   75 (145)
T ss_dssp             HHTTSSCCC-------CEEECTTCBHHHHHHHHHHSTTCCEEEE--EETTEEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred             EhHHhCCCC-------CEEECCcCcHHHHHHHHHHcCCceEEEe--ccCcceeeeeccchhhhhhhcccccccchhHHHH
Confidence            345566665       8999999999999999999999999999  78899999999999887654210           


Q ss_pred             ---CCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          124 ---RSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       124 ---~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                         ......++.++|..   ++++++++++.+|++.|.+++.+++||+|+ |+++|+||..|+++++.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3          76 SSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             -CCCCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             hhhhhccccCHHHHcCC---CEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcC
Confidence               11233456777765   788999999999999999999999999986 99999999999999998764

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=9.1e-21  Score=134.21  Aligned_cols=122  Identities=20%  Similarity=0.338  Sum_probs=106.2

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------  124 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---------  124 (205)
                      ++|+++|.++       ++++++++++.+|++.|.+++++++||+  |+  +++|+++..++++.+.....         
T Consensus         1 m~V~~lM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~l~V~--d~--~lvg~~~~~~~~~~~~~~~~~~~~~~~~~   69 (135)
T d3ddja2           1 MNIETLMIKN-------PPILSKEDRLGSAFKKINEGGIGRIIVA--NE--KIEGLLTTRDLLSTVESYCKDSCSQGDLY   69 (135)
T ss_dssp             SSGGGTCEES-------CCEECTTSBHHHHHHHTTGGGCCEEEEE--SS--SEEEEEEHHHHHGGGTTCC---CCHHHHH
T ss_pred             CEeeEEeeCC-------CeEECCCCcHHHHHHHHHHhCCeEEEEE--ec--ceeceeeccchhhhhccccccchhhhhcc
Confidence            4799999987       8999999999999999999999999999  54  69999999998765532211         


Q ss_pred             CCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       125 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      .....+++++|...  +.++++++++.+|++.|.+++++++||+|+ |+++|+||++|+++++.+
T Consensus        70 ~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          70 HISTTPIIDYMTPN--PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HHHTSBGGGTSEES--CCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             ccccCCHHHHhCCc--cceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            11356799999985  999999999999999999999999999987 899999999999998754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.82  E-value=8.3e-20  Score=132.00  Aligned_cols=117  Identities=16%  Similarity=0.342  Sum_probs=101.8

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccC----CceEEEcC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE----NKLITVSP  146 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~  146 (205)
                      ++++.+++|+.+|++.|.+++++++||+  |++|+++|+|+.+|+++.+..........++.++|...    +++.++++
T Consensus        14 vv~v~~~~~v~~a~~~m~~~~~~~lpVv--d~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~   91 (153)
T d2ooxe2          14 LATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRA   91 (153)
T ss_dssp             CCCBCTTSBHHHHHHHHHHTTCSEEEEE--CGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECT
T ss_pred             CeEEeCcCcHHHHHHHHHHcCcceEeee--cccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECC
Confidence            8999999999999999999999999999  88999999999999887765544334456777777542    24678999


Q ss_pred             CCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          147 DTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       147 ~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      ++++.++++.|.+++.+++||+|+ |+++|+||++|+++++...
T Consensus        92 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          92 TDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             TCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             CCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence            999999999999999999999986 8999999999999988643

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.4e-19  Score=128.94  Aligned_cols=115  Identities=19%  Similarity=0.326  Sum_probs=94.2

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccccccc----CCceEEEcC
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE----ENKLITVSP  146 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~----~~~~~~v~~  146 (205)
                      ++++++++++.+|++.|.+++.+.+||+  |++|+++|+|+..|+++.+...........+...+..    ..+++++++
T Consensus        19 v~tv~~~~~v~~a~~~m~~~~~~~ipVv--d~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   96 (140)
T d2nyca1          19 MKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTK   96 (140)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECT
T ss_pred             CEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhcccccEEECC
Confidence            8999999999999999999999999999  8899999999999998876654433333333333321    124789999


Q ss_pred             CCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          147 DTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       147 ~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      ++++.++++.|.+++++++||+|+ |+++|+||.+|+++++.
T Consensus        97 ~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          97 NDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            999999999999999999999986 99999999999999874

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.3e-20  Score=135.59  Aligned_cols=133  Identities=17%  Similarity=0.220  Sum_probs=109.6

Q ss_pred             ccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC----
Q 028667           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS----  125 (205)
Q Consensus        50 ~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~----  125 (205)
                      -|...++.|+|.+..+     +++++.++++.+|++.|.+++++.+||++ +++++++|+|+..|++..+......    
T Consensus         9 ~l~~~t~~Dlm~~~~~-----vv~l~~~~sv~eA~~~l~~~~~~~~pVv~-~~~~~~vG~is~~Dl~~~~~~~~~~~~~~   82 (159)
T d2v8qe2           9 FMKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLWD-SKKQSFVGMLTITDFINILHRYYKSALVQ   82 (159)
T ss_dssp             HHHHSBGGGGSCSEEE-----EEEEETTSBHHHHHHHHHHHTCSEEEEEE-TTTTEEEEEEEHHHHHHHHHHHHHHHTTT
T ss_pred             HhcCCEEEeECCCCCc-----eEEEcCCCcHHHHHHHHHHcCCCceeEEE-CCCCcEEEEEEHHHHHHHHHhccccccch
Confidence            3677899999976533     89999999999999999999999999995 4678999999999988766432110    


Q ss_pred             C----------CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee-C-CeEEEEEeHHHHHHHHHhhh
Q 028667          126 S----------KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-D-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       126 ~----------~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~-~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      .          .......+|.+  +++++++++++.+|++.|.+++.+++||++ + |+++|+||++||++++....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2          83 IYELEEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             CCCGGGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred             hhhhhhhhcccccceeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHc
Confidence            0          01123456666  489999999999999999999999999997 4 79999999999999998764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=2.2e-19  Score=128.53  Aligned_cols=128  Identities=20%  Similarity=0.281  Sum_probs=104.5

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~  132 (205)
                      ..++++++....+    +++++.+++|+.+|++.|.+++++.+||+  +++|+++|+|+..|+++.+..........++.
T Consensus         8 ~~~l~~l~i~~~~----~v~~v~~~~tv~eal~~m~~~~~~~lpVv--d~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~   81 (145)
T d2v8qe1           8 SKSLEELQIGTYA----NIAMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVT   81 (145)
T ss_dssp             GSBHHHHTCSBCS----SCCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHH
T ss_pred             hCCHHHHcCCCCC----CceEEcCcCcHHHHHHHHHHcCCCccccc--ccCCceEEEEEcchhhhhhhcccccchhhhhh
Confidence            4567777653211    28999999999999999999999999999  89999999999999877654433333334444


Q ss_pred             cc------cccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667          133 DI------MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       133 ~i------m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~  188 (205)
                      +.      |..  ++.++.+++++.++++.|.+++.+++||+|+ |+++|+||.+||++++..
T Consensus        82 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          82 KALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             HHGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             hccchhhhccC--CCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            33      444  4889999999999999999999999999986 999999999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.79  E-value=4.9e-19  Score=130.89  Aligned_cols=135  Identities=19%  Similarity=0.247  Sum_probs=109.3

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC--C--C
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--S--S  126 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~--~--~  126 (205)
                      +...++.|+|.+..+     +++++++.++.+|.+.|.+++++.+||++ +++++++|+|+..|+++.+.....  .  .
T Consensus        17 l~~~~~~dvm~~s~~-----vv~i~~~~~v~~A~~~m~~~~i~~lpVvd-~~~~~~vGiis~~Di~~~l~~~~~~~~~~~   90 (179)
T d2ooxe1          17 IRSRTSYDVLPTSFR-----LIVFDVTLFVKTSLSLLTLNNIVSAPLWD-SEANKFAGLLTMADFVNVIKYYYQSSSFPE   90 (179)
T ss_dssp             HHHSBHHHHSCSEEE-----EEEEETTSBHHHHHHHHHHHTCSCEEEEE-TTTTEEEEEECHHHHHHHHHHHHHHCSCGG
T ss_pred             HcCCEeeeeCCCCCc-----EEEEECcchHHHHHHHHHHcCCCeEEEEe-CCCCeeEEEEeechHHHHHHhccccccchh
Confidence            467789999986433     89999999999999999999999999994 356899999999999876643210  0  0


Q ss_pred             --------------CcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-C-----eEEEEEeHHHHHHHH
Q 028667          127 --------------KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-K-----GMIGMVSIGDVVRAV  186 (205)
Q Consensus       127 --------------~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~-----~~vGiIt~~dil~~l  186 (205)
                                    .......+|..  +++++++++++.+|+..|.+++.+++||+++ |     +++|+||++||++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l  168 (179)
T d2ooxe1          91 AIAEIDKFRLLGLREVERKIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI  168 (179)
T ss_dssp             GGGGGGGSBHHHHHHHHHHTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHH
T ss_pred             hhhhhhccchhhhcccceeeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHH
Confidence                          00112334555  4899999999999999999999999999984 2     799999999999999


Q ss_pred             HhhhhHH
Q 028667          187 VSEHREE  193 (205)
Q Consensus       187 ~~~~~~~  193 (205)
                      ..+..+.
T Consensus       169 ~~~~~~~  175 (179)
T d2ooxe1         169 SMNCKET  175 (179)
T ss_dssp             HTTCGGG
T ss_pred             HHhhhHh
Confidence            8877654

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.78  E-value=7.7e-21  Score=132.15  Aligned_cols=112  Identities=15%  Similarity=0.308  Sum_probs=59.8

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecC-CCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK  149 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d-~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~  149 (205)
                      |+++++++|+.+|+++|.+++++++||++++ .+++++|+||.+|+... ..   .....++..+|...+++++++++++
T Consensus         6 pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~-~~---~~~~~~~~~~~~~~~~~~~v~~~~~   81 (120)
T d1jr1a4           6 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFL-KE---EEHDRFLEEIMTKREDLVVAPAGIT   81 (120)
T ss_dssp             TCC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETTCC
T ss_pred             CEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeeh-hc---cccCceeEEEEeeccCceEECCCCC
Confidence            8899999999999999999999999999311 36799999999996432 21   1224466666655445899999999


Q ss_pred             HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHH
Q 028667          150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAV  186 (205)
Q Consensus       150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l  186 (205)
                      +.+|+++|.+++++++||+|+ |+++|+||+.|+++..
T Consensus        82 ~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          82 LKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             HHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence            999999999999999999987 8999999999999863

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.02  E-value=3.3e-10  Score=78.17  Aligned_cols=60  Identities=23%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~  119 (205)
                      ..+.+|+++|.++       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+||..|++..+
T Consensus        62 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lPVV--D~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          62 DDDTLIADILNER-------VISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             CTTSBHHHHSBSC-------CCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHH
T ss_pred             cccEEhhhhccCC-------CccCCCCCCHHHHHHHHHHhCCEEEEEE--eCCCEEEEEEEHHHHHHHH
Confidence            3678999999987       8999999999999999999999999999  8899999999999998754

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=4.8e-10  Score=77.76  Aligned_cols=61  Identities=21%  Similarity=0.404  Sum_probs=56.0

Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      .+++++|.+.++++++++++++.+|++.|.+++++.+||+|+ |+++|+|+..|+++.+.+.
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~   63 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL   63 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcc
Confidence            578999987667999999999999999999999999999987 8999999999999998653

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.92  E-value=1.1e-09  Score=74.76  Aligned_cols=59  Identities=19%  Similarity=0.300  Sum_probs=54.4

Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                      .++++|+++  ++++++++++.+|++.|.+++.+.+||+++|+++|+||.+|+++.+....
T Consensus         1 kV~diM~~~--~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~~   59 (120)
T d1pbja3           1 RVEDVMVTD--VDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGD   59 (120)
T ss_dssp             CHHHHCBCS--CCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTC
T ss_pred             ChHHhCCCC--CeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeeccccccccc
Confidence            368999985  99999999999999999999999999999999999999999999887654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.89  E-value=2.8e-09  Score=73.25  Aligned_cols=61  Identities=25%  Similarity=0.440  Sum_probs=56.4

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~  190 (205)
                      +..|+++|+++  ++++++++++.+|++.|.+++.+.+||+++|+++|+||..|+++.+....
T Consensus         3 ~~~V~d~m~~~--~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~~   63 (127)
T d2ef7a1           3 EEIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGK   63 (127)
T ss_dssp             CCBGGGTSBCS--CCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTC
T ss_pred             ccCHHHhCCCC--CeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHhhc
Confidence            46899999985  99999999999999999999999999999999999999999999887554

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.88  E-value=2e-09  Score=75.25  Aligned_cols=60  Identities=35%  Similarity=0.471  Sum_probs=55.0

Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      .+++++|+++  +.++++++++.+|++.|.+++++.+||+|+ |+++|+||.+|+++.+....
T Consensus         2 i~v~diM~~~--~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~   62 (139)
T d2o16a3           2 IKVEDMMTRH--PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL   62 (139)
T ss_dssp             CBGGGTSEES--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             EEHHHhCcCC--CeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhh
Confidence            3689999985  999999999999999999999999999987 89999999999999887653

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=1.2e-09  Score=75.77  Aligned_cols=60  Identities=28%  Similarity=0.493  Sum_probs=54.9

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE  189 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~  189 (205)
                      ..|++++|+++  +.++++++++.+|++.|.+++.+.+||+|+ |+++|+||..|+++.+...
T Consensus         4 ~~pV~~im~~~--~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~   64 (132)
T d2yzia1           4 KAPIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP   64 (132)
T ss_dssp             TSBGGGTCBCC--CCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             CCcHHHHcCCC--CeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc
Confidence            45899999885  999999999999999999999999999997 8999999999999876643

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=3e-09  Score=74.84  Aligned_cols=61  Identities=25%  Similarity=0.353  Sum_probs=55.9

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ....++.++|.+.       ++++.+++++.+|++.|.+++.+.+||+  |++|+++|+||.+|+++.+.
T Consensus        62 ~~~~~v~~im~~~-------~~~v~~~~~~~~a~~~m~~~~~~~lPVV--d~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          62 DPRTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             CTTCBSTTTSBSS-------CCCEESSCCHHHHHHHHHHSCCSEEEEE--CSSCBEEEEEEHHHHHHHHH
T ss_pred             ccccchHHhcccC-------CccCCCCChHHHHHHHHHHcCCCEEEEE--eECCEEEEEEEHHHHHHHHH
Confidence            4567899999986       8999999999999999999999999999  88999999999999988653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=1.3e-08  Score=69.27  Aligned_cols=98  Identities=17%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             chHHHHHHHhhcCCCCcccccc--cccccccccccccccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCC
Q 028667           15 VKSAVLQRIRLVNPMLRPVVSS--RFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNV   92 (205)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~   92 (205)
                      +-.+.+..+........+.+-.  ++......+...+.....++.++|..+       +.++++++++.++++.|.+++.
T Consensus        19 tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~   91 (121)
T d1vr9a3          19 TVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLP-------DFFVHEEDNITHALLLFLEHQE   91 (121)
T ss_dssp             BHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBCT-------TCCEETTSBHHHHHHHHHHCCC
T ss_pred             CHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhccccccccccCc-------cEEECCCCCHHHHHHHHHhcCc
Confidence            3455666666655544444321  122222222222334567899999986       8999999999999999999999


Q ss_pred             CeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           93 GALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        93 ~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ..+||+  |++|+++|+||..|+++++..
T Consensus        92 ~~lpVv--de~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          92 PYLPVV--DEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             SEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             eeeeeE--CCCCeEEEEEEHHHHHHHHHH
Confidence            999999  899999999999999987653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=2.2e-09  Score=73.41  Aligned_cols=57  Identities=26%  Similarity=0.391  Sum_probs=51.7

Q ss_pred             CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667          129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV  187 (205)
Q Consensus       129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~  187 (205)
                      ++++++|++.  ++++++++++.+|++.|.+++++.+||+++ |+++|+||..|++....
T Consensus         1 tt~~diM~~~--~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~   58 (123)
T d1y5ha3           1 TTARDIMNAG--VTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL   58 (123)
T ss_dssp             CCHHHHSEET--CCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTG
T ss_pred             CCHHHhcCCC--CcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhh
Confidence            3688999985  999999999999999999999999999986 89999999999987543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.79  E-value=7.4e-09  Score=72.15  Aligned_cols=60  Identities=23%  Similarity=0.405  Sum_probs=55.6

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ...+++++|.+.       ++++.+++++.++++.|.+++.+++||+  |++|+++|+||.+|+++.+.
T Consensus        71 ~~~~v~~im~~~-------~~~v~~~~~~~~~~~~m~~~~~~~l~Vv--d~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          71 YGKVVKDVMVTN-------LVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             HTCBHHHHSBCC-------CCBCCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             cCCCHHHHhCcc-------cccccccchhhHHHHHHHHcCCCEEEEE--ccCCEEEEEEEHHHHHHHHH
Confidence            567899999986       8999999999999999999999999999  89999999999999988664

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.78  E-value=2.2e-09  Score=74.48  Aligned_cols=59  Identities=27%  Similarity=0.397  Sum_probs=54.9

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      +...+++++|..+       +.++.+++++.+|++.|.+++.+++||+  |++|+++|+||.+|+++.
T Consensus        71 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~i~~lpVv--d~~g~lvGiit~~Dil~~  129 (135)
T d3ddja2          71 ISTTPIIDYMTPN-------PVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLL  129 (135)
T ss_dssp             HHTSBGGGTSEES-------CCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGG
T ss_pred             cccCCHHHHhCCc-------cceEEeccccchhhhhhhhcceeEEEEE--eCCCEEEEEEEHHHHHHH
Confidence            3578899999987       8999999999999999999999999999  899999999999998864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.78  E-value=3.5e-09  Score=72.30  Aligned_cols=61  Identities=23%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ....+++++|.++       ++++++++++.++++.|.+++.+.+||+  |++|+++|+||..|++++++
T Consensus        57 ~~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          57 PDEEQLAMLVKRD-------VPVVKENDTLKKAAKLMLEYDYRRVVVV--DSKGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             -------CCCBSC-------CCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTT
T ss_pred             hcccchhhccccc-------eeecchhhHHHHHHHHHHHcCcEEEEEE--eCCCEEEEEEEHHHHHHHHH
Confidence            4667889999886       8999999999999999999999999999  89999999999999987654

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=2.2e-09  Score=76.28  Aligned_cols=59  Identities=19%  Similarity=0.327  Sum_probs=54.1

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      ....+|+++|.+.       +.++.+++++.++++.|.+++.+++||+  |++|+++|+||.+|+++.
T Consensus        96 ~~~~~v~~~m~~~-------~~tv~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          96 LPNKPVAEIMTRD-------VIVATPHMTVHEVALKMAKYSIEQLPVI--RGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             -CCCBGGGTCBSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--ETTTEEEEEEEHHHHGGG
T ss_pred             ccCCEeehhcccC-------ceEECcccccHHHHHHHHHcCeeEEEEE--eCCCEEEEEEEHHHHHHH
Confidence            4567899999986       8999999999999999999999999999  889999999999998864

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.73  E-value=4.7e-09  Score=73.58  Aligned_cols=59  Identities=20%  Similarity=0.245  Sum_probs=54.3

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      ....+++++|..+       ++++++++++.+|++.|.+++.+++||+  |++|+++|+|+..|+++.
T Consensus        66 ~~~~~v~~im~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          66 PDEVPIRLVMRKP-------IPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             GGGSBGGGTSBSS-------CCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTT
T ss_pred             ccccccccccccc-------cccccchhhHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHHH
Confidence            4567899999876       8999999999999999999999999999  889999999999998863

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.73  E-value=1.1e-08  Score=70.24  Aligned_cols=60  Identities=20%  Similarity=0.354  Sum_probs=54.4

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ....+++++|.++       +.++.+++++.+|++.|.+++.+++||+  | +|+++|+||..|++++++
T Consensus        67 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          67 VKDTQVKEIMTRQ-------VAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             GGGSBGGGTSBCS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             ccceeEeeeccce-------eEEeccCccHHHHHHHHHHCCCcEEEEE--E-CCEEEEEEEHHHHHHHHh
Confidence            4567899999986       8999999999999999999999999999  5 589999999999998754

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=2.3e-08  Score=69.93  Aligned_cols=62  Identities=19%  Similarity=0.293  Sum_probs=55.3

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHc
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~  122 (205)
                      +...+++++|..        ++++.+++++.+|++.|.+++.+++||+  |++|+++|+||..|+++.+...
T Consensus        81 ~~~~~~~~~~~~--------~~~i~~~~~l~~a~~~m~~~~i~~lpVV--d~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          81 LIAKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVV--DEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             CSSCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHS
T ss_pred             ccccCHHHHcCC--------CEEEcCCCCHHHHHHHHHHcCceEEEEE--eCCCeEEEEEEHHHHHHHHHhc
Confidence            455678888865        7889999999999999999999999999  8999999999999999987654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.3e-08  Score=71.01  Aligned_cols=62  Identities=19%  Similarity=0.210  Sum_probs=55.3

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG  123 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~  123 (205)
                      ...+++++|.+.       +.++.+++++.+++++|.+++.+.+||+  + +|+++|+||..|+++++....
T Consensus        98 ~~~~v~~im~~~-------~~tv~~~~~l~~v~~~~~~~~~~~l~V~--d-~g~lvGiIt~~Dil~~l~~~~  159 (169)
T d2j9la1          98 PTLKLRNILDLS-------PFTVTDLTPMEIVVDIFRKLGLRQCLVT--H-NGRLLGIITKKDVLKHIAQMA  159 (169)
T ss_dssp             CCEECGGGEESS-------CCEEETTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHHHC
T ss_pred             cccchhhhccCC-------CEEECCCCcHHHHHHHHHhcCceEEEEE--E-CCEEEEEEEHHHHHHHHHHHh
Confidence            467799999987       8999999999999999999999999998  4 689999999999998876543

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=7.4e-08  Score=68.26  Aligned_cols=64  Identities=22%  Similarity=0.421  Sum_probs=56.4

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHHHHHhhhh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVRAVVSEHR  191 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~~~~~  191 (205)
                      ..++.|+|.+..++++++.++++.+|++.|.++++..+||+++  ++++|+|+..|++..+.+...
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~   77 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK   77 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence            4588999976556899999999999999999999999999974  799999999999999876543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=3.9e-08  Score=68.78  Aligned_cols=68  Identities=24%  Similarity=0.405  Sum_probs=54.3

Q ss_pred             cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC
Q 028667           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG  123 (205)
Q Consensus        53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~  123 (205)
                      ..++.+.+.... ....+++++.+++++.++++.|.+++.+++||+  |++|+++|+||.+|++++++..+
T Consensus        77 ~~~v~~~~~~~~-~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~l~GiVt~~dii~~lv~~~  144 (145)
T d2v8qe1          77 DVSVTKALQHRS-HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVLTG  144 (145)
T ss_dssp             SSBHHHHGGGCC-SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             hhhhhhccchhh-hccCCCeEECCCCcHHHHHHHHHHcCceEEEEE--ccCCEEEEEEEHHHHHHHHHhcC
Confidence            455666655321 011237889999999999999999999999999  89999999999999999887543

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.60  E-value=4.9e-08  Score=67.04  Aligned_cols=59  Identities=15%  Similarity=0.300  Sum_probs=53.1

Q ss_pred             ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee--C-CeEEEEEeHHHHHHHHHhhh
Q 028667          130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID--D-KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~--~-~~~vGiIt~~dil~~l~~~~  190 (205)
                      +++++|++.  ++++++++++.+|++.|.+++.+++||++  + ++++|+++..|+.+.+.+..
T Consensus         2 ~V~dim~~~--~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~   63 (131)
T d2riha1           2 RTSELLKRP--PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL   63 (131)
T ss_dssp             BGGGGCCSC--CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC
T ss_pred             CHHHhccCC--CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc
Confidence            689999985  99999999999999999999999999994  3 78999999999999877543

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.57  E-value=2.3e-07  Score=65.39  Aligned_cols=67  Identities=21%  Similarity=0.273  Sum_probs=55.7

Q ss_pred             ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (205)
Q Consensus        52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~  121 (205)
                      ...++.++|..... ...+++++.+++++.++++.|.+++.+.+||+  |++|+++|+||..|+++++..
T Consensus        68 ~~~~v~~~~~~~~~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          68 LDLSVGEALLKRPA-NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             GGSBHHHHHHTSCC-CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEE--CTTCBEEEEEEHHHHHHHHHS
T ss_pred             cccchhhheeeeec-ccCCCeEECCCCcHHHHHHhhhhceeeEEEEE--cCCCEEEEEEEHHHHHHHHHc
Confidence            45688888875311 11236789999999999999999999999999  899999999999999988764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.55  E-value=6.6e-08  Score=69.89  Aligned_cols=61  Identities=23%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHHHHHh
Q 028667          128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVRAVVS  188 (205)
Q Consensus       128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~~  188 (205)
                      ...+.++|.+..++++++++.++.+|+..|.++++..+||+|+  ++++|+||..|+++.+..
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            4578999986446999999999999999999999999999984  799999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.54  E-value=1.4e-07  Score=66.52  Aligned_cols=63  Identities=14%  Similarity=0.388  Sum_probs=56.5

Q ss_pred             CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHHHHHhhh
Q 028667          126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVRAVVSEH  190 (205)
Q Consensus       126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~~l~~~~  190 (205)
                      ....+++++|+++  ++++++++++.+|++.|.++++..+||+++   +.++|+++..|++..+....
T Consensus         8 ~~~~~V~diM~~~--~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~   73 (160)
T d2d4za3           8 KYNIQVGDIMVRD--VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI   73 (160)
T ss_dssp             CSSCBTTSSSBSS--CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             ccceEHHHhcCCC--CeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcc
Confidence            3467899999985  999999999999999999999999999984   58999999999999987643

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.52  E-value=2.6e-08  Score=67.62  Aligned_cols=58  Identities=17%  Similarity=0.309  Sum_probs=43.5

Q ss_pred             ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (205)
Q Consensus        54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~  118 (205)
                      .++..+|....     +++++.+++++.+|+++|.+++.+++||+  |++|+++|+||.+|++++
T Consensus        61 ~~~~~~~~~~~-----~~~~v~~~~~~~~a~~~m~~~~i~~lpVV--d~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          61 RFLEEIMTKRE-----DLVVAPAGITLKEANEILQRSKKGKLPIV--NENDELVAIIARTDLKKN  118 (120)
T ss_dssp             -----CCSBTT-----TSCCEETTCCHHHHHHHTCSCC---CEEE--ETTTEEEEEECHHHHHHH
T ss_pred             ceeEEEEeecc-----CceEECCCCCHHHHHHHHHHcCccEEEEE--cCCCEEEEEEEHHHhhhc
Confidence            45555554432     27899999999999999999999999999  889999999999999874

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.50  E-value=1e-07  Score=65.07  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=45.1

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ++++.++.++.+|+++|.+++.+.+||+  |++|+++|+||..|++++..
T Consensus        70 ~~~~~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          70 LVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             CCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             eeecCCCCCHHHHHHHHHhcCCcEEEEE--cCCCeEEEEEEHHHHHHHhh
Confidence            7889999999999999999999999999  89999999999999988643

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1.6e-07  Score=65.15  Aligned_cols=48  Identities=23%  Similarity=0.418  Sum_probs=44.9

Q ss_pred             ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (205)
Q Consensus        71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~  120 (205)
                      ++++.+++++.++++.|.+++.+.+||+  |++|+++|+||.+|++++++
T Consensus        91 ~~~v~~~~~l~~~~~~~~~~~~~~l~VV--d~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          91 VYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             -CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             cEEECCCCcHHHHHHHHHhcCeeEEEEE--eCCCeEEEEEEHHHHHHHHh
Confidence            7889999999999999999999999999  89999999999999998765

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=92.58  E-value=0.00037  Score=50.84  Aligned_cols=104  Identities=9%  Similarity=0.045  Sum_probs=73.6

Q ss_pred             hhHHHhhcCCcchHHHHHHHhhcCCCCcccccccccccccccccccccccccHhHHhhhcCCCCCCCceEeCCCchHHHH
Q 028667            4 AIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDA   83 (205)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a   83 (205)
                      ++++++....-....+...+...++.+......++..+..............++++|...       +.++..+++-..+
T Consensus        87 v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~~~~l~~i~~~~-------~~~a~~~~~~e~~  159 (213)
T d1lkvx_          87 AAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRD-------LALALKGASDELK  159 (213)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHH-------HHHHHTTCCHHHH
T ss_pred             HHHHHHhcccccchhheeeeeecChhhhhhHhhhccccccHHHHccccHhHHHHHhhhhh-------heeehhcCCHHHH
Confidence            455666666666666666666655554444444444443332222223456677788776       7888899999999


Q ss_pred             HHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667           84 VKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (205)
Q Consensus        84 ~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll  116 (205)
                      .++|.+.+....||+  +++++.+|.|+..|+.
T Consensus       160 ~~~l~~~~~~~~~vv--~~e~~~~G~I~~~Die  190 (213)
T d1lkvx_         160 EKIFKNMSKRAAALL--KDELEYMGPVRLKDVE  190 (213)
T ss_dssp             HHHHTTSCHHHHHHH--HHHHHSCCCCCHHHHH
T ss_pred             HHHHHhCCHHHHHHH--HHhhhhcCCCcHHHHH
Confidence            999999999999999  8999999999999964

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=91.32  E-value=0.00021  Score=52.28  Aligned_cols=118  Identities=12%  Similarity=0.023  Sum_probs=83.8

Q ss_pred             cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCC-------------CeEEEEecCCCCceEEEEehHHHHH
Q 028667           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNV-------------GALVVVKPGEQKSVAGIITERDYLR  117 (205)
Q Consensus        51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~-------------~~~~Vv~~d~~~~~~G~v~~~dll~  117 (205)
                      +.....+.+|...       ........++..+.+.+.....             ...++.  +..++++|+.+..++..
T Consensus        62 ~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~--~i~~~l~~f~dl~~l~~  132 (213)
T d1lkvx_          62 IERNLEKKISGFV-------SRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELAD--EIRRRMFVFEDILKLDD  132 (213)
T ss_dssp             HHHHHHHHHHHHH-------HHHHSSCCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHH--HHHHHHCCGGGGGGSCH
T ss_pred             HHHHHHhcccccc-------chhhhcchHHHHHHHHHHhcccccchhheeeeeecChhhhh--hHhhhccccccHHHHcc
Confidence            4455667777765       5556666677777766654321             011222  34566777777766554


Q ss_pred             HHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHH
Q 028667          118 KIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAV  186 (205)
Q Consensus       118 ~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l  186 (205)
                      .       .....+.+++...  +.++..+++-+.+.++|...+....||+++ ++.+|.|+..|+..+-
T Consensus       133 ~-------~~~~~l~~i~~~~--~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~  193 (213)
T d1lkvx_         133 R-------SIQLVLREVDTRD--LALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQ  193 (213)
T ss_dssp             H-------HHHHHHTTSCHHH--HHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             c-------cHhHHHHHhhhhh--heeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHHH
Confidence            2       2345678888774  888889999999999999999999999987 8999999999997763