Citrus Sinensis ID: 028702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MRTLVLRPQYHCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPCSSLKQTKKQNTLQKSTTNAPRSLGWFFNPKGDDDDNNNRIQGNGMDAESEGLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccEEEEEcccccEEccccccHHHccccccHHcccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccEEEEEEHHHHHHHEEEEEccccEEcc
Coil and Loop (DISEMBL)
mrtlvlrpqyhchqppscfltssnsfihsfkphrrfhfvkpcsslkqtkkqntlqksttnaprslgwffnpkgddddnnnriqgngmdaeseglegdtavkGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGfiegygpaGYALFVAVYAGLEilaipaipltmsagllfgsVTGTIIVSIsgtvsgskccifdcpifrs
Flexible Loop (DISEMBL)
mrtlvlrpqyhchqppscfLTSSNSFIHSFKPHRRFHFVKPCsslkqtkkqntlqksttnaprslgwffnpkgddddnnNRIQGNGMDAESEGLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSisgtvsgskccifdcpifrs
Low Complexity Region (SEG)
MRTLVLRPQYHCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPCSslkqtkkqntlqksttnAPRSLGWFFNPKGDDDDNNNRIQGNGMDAESEGLEGDTAVKGSIlagvlllvvvggfgTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFgsvtgtiivsisgtvsgsKCCIFDCPIFRS
Disordered region (IsUnstruct)
****VLRPQYHCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPC***********************GWFF*****************************AVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIF**
Disordered Region (DISOPRED)
******************************************************************************************************SILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS
Disordered Region (DISEMBL)
MRTLVLRPQYHCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPCSSLKQTKKQNTLQKSTTNAPRSLGWFFNPKGDDDDNNNRIQGNGMDAESEGLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS
Disordered Region (DISPRO)
*RTLVLRPQYHCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPCSSL***************************************************DTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRTLVLRPQYHCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPCSSLKQTKKQNTLQKSTTNAPRSLGWFFNPKGDDDDNNNRIQGNGMDAESEGLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
449447579	334	PREDICTED: TVP38/TMEM64 family membrane	0.912	0.559	0.648	2e-61
255569090	334	conserved hypothetical protein [Ricinus	0.882	0.541	0.688	3e-54
147835865	306	hypothetical protein VITISV_041846 [Viti	0.770	0.516	0.75	1e-49
224136135	331	predicted protein [Populus trichocarpa]	0.824	0.510	0.711	8e-49
18395168	344	SNARE associated Golgi protein family [A	0.780	0.465	0.642	2e-46
118486778	321	unknown [Populus trichocarpa]	0.858	0.548	0.641	1e-45
224145050	289	predicted protein [Populus trichocarpa]	0.736	0.522	0.710	1e-44
297740945	309	unnamed protein product [Vitis vinifera]	0.653	0.433	0.681	3e-44
388495562	332	unknown [Lotus japonicus]	0.848	0.524	0.582	2e-43
357470489	331	TVP38/TMEM64 family membrane protein slr	0.834	0.516	0.585	5e-43

>gi|449447579|ref|XP_004141545.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Cucumis sativus] gi|449481518|ref|XP_004156206.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Cucumis sativus]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/202 (64%), Positives = 155/202 (76%), Gaps = 15/202 (7%)

Query: 1   MRTLV-LRPQYHCHQPPSCFLTSSN-------SFIHSFKPHRRFHFVKPCSSLKQTKKQN 52
           MR L+ LRP      PP C L+S N       SF+ SF+P++RFHF+KPCSSLKQ+KK  
Sbjct: 1   MRVLLTLRPA--SSNPPPC-LSSPNFSPPLASSFLFSFRPNKRFHFLKPCSSLKQSKKP- 56

Query: 53  TLQKSTTNAPRSLGWFFNPKGDDDDNNNRIQGN-GMDAESEGLEGDTAVKGSILAGVLLL 111
           TLQK+ T+AP+S  W F+ K DDDD   +  GN G+D +   LE D+AVKG++LAGVLL+
Sbjct: 57  TLQKTPTSAPQSFKWLFSAKSDDDDAGEK--GNKGVDGDGAVLEDDSAVKGTLLAGVLLV 114

Query: 112 VVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSA 171
            V+GGF   GYVY+D INAFL QFS FI+GYGPAGYALFVAVYAGLEILAIPAIPLTMSA
Sbjct: 115 GVIGGFAFAGYVYRDPINAFLNQFSTFIDGYGPAGYALFVAVYAGLEILAIPAIPLTMSA 174

Query: 172 GLLFGSVTGTIIVSISGTVSGS 193
           GLLFGSV GT+IVSISGTV+ S
Sbjct: 175 GLLFGSVIGTVIVSISGTVAAS 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569090|ref|XP_002525514.1| conserved hypothetical protein [Ricinus communis] gi|223535193|gb|EEF36872.1| conserved hypothetical protein [Ricinus communis]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/209 (68%), Positives = 162/209 (77%), Gaps = 28/209 (13%)

Query: 1   MRTLV-LRPQYHCHQPPSCFLTSSNS-------------FIHSFKPHRRFHFVKPCSSLK 46
           MRTL+ LRP      PPS  LTSS               F++SF+P++RFHF+ PCSSLK
Sbjct: 1   MRTLLSLRP------PPSPCLTSSFHSSSSSSSSSSCTSFLYSFRPNKRFHFLTPCSSLK 54

Query: 47  QTKKQNTLQKSTTNAPRSLGWFFNPKG--DDDDNNNRIQGNGMDAESEGLEGDTAVKGSI 104
           QTKKQ TLQKS T AP+SL WF NPKG  DDDD  N+    G + +  GLEGDTA+KG++
Sbjct: 55  QTKKQ-TLQKSNT-APQSLRWFLNPKGSGDDDDKINK----GENDDGGGLEGDTAIKGTL 108

Query: 105 LAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPA 164
           LAGVLL+ VVGGFG +GYVY+DQINAFL QFSGFIEGYGPAGYALFVAVYAGLEILAIPA
Sbjct: 109 LAGVLLVGVVGGFGAVGYVYRDQINAFLNQFSGFIEGYGPAGYALFVAVYAGLEILAIPA 168

Query: 165 IPLTMSAGLLFGSVTGTIIVSISGTVSGS 193
           IPLTMSAGLLFGSV GTIIVSISGTV+ S
Sbjct: 169 IPLTMSAGLLFGSVIGTIIVSISGTVAAS 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835865|emb|CAN68419.1| hypothetical protein VITISV_041846 [Vitis vinifera]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/160 (75%), Positives = 133/160 (83%), Gaps = 2/160 (1%)

Query: 34  RRFHFVKPCSSLKQTKKQNTLQKSTTNAPRSLGWFFNPKGDDDDNNNRIQGNGMDAESEG 93
           +RFHF+KPCSSLKQTKKQ     S +NAP+SL WF NPK  D + +    GNG D   E 
Sbjct: 40  KRFHFLKPCSSLKQTKKQLQKTSSGSNAPQSLRWFLNPKSSDGEEDASGGGNGDDGGLE- 98

Query: 94  LEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAV 153
             GDTAVKG++LAG+LL+ VVGGF T+GYVY+DQINAFLTQFSGFIEGYGPAGYALFVAV
Sbjct: 99  -SGDTAVKGTLLAGLLLVGVVGGFATVGYVYRDQINAFLTQFSGFIEGYGPAGYALFVAV 157

Query: 154 YAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGS 193
           YAGLEILAIPAIPLTMSAGLLFGS TGTIIVSISGTV+ S
Sbjct: 158 YAGLEILAIPAIPLTMSAGLLFGSFTGTIIVSISGTVAAS 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136135|ref|XP_002327389.1| predicted protein [Populus trichocarpa] gi|118487737|gb|ABK95692.1| unknown [Populus trichocarpa] gi|222835759|gb|EEE74194.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 144/180 (80%), Gaps = 11/180 (6%)

Query: 15  PPSCFLTSSNSFIHSFKPHRRFHFVKPCSSLKQTKKQ-NTLQKSTTNAPRSLGWFFNPKG 73
           PP C L     F +SF+P++R HF+ PCSSLKQ KKQ  TL+K  TNAP+SL WF NPKG
Sbjct: 25  PPPCTL-----FHYSFRPNKRIHFLTPCSSLKQRKKQPETLRK--TNAPQSLRWFLNPKG 77

Query: 74  DDDDNNNRIQGNGMDAESEGLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLT 133
           DD D+  +          EGLEGDTA KG++LAGVLL+ VVGGFG +GY+YKDQINAFL 
Sbjct: 78  DDSDDKIKGD---GGEAEEGLEGDTAFKGTLLAGVLLVGVVGGFGAVGYIYKDQINAFLN 134

Query: 134 QFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGS 193
           QFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGS+ GTIIVSISGTV+ S
Sbjct: 135 QFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLIGTIIVSISGTVAAS 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395168|ref|NP_564182.1| SNARE associated Golgi protein family [Arabidopsis thaliana] gi|2462839|gb|AAB72174.1| unknown [Arabidopsis thaliana] gi|15215602|gb|AAK91346.1| At1g22850/F29G20_19 [Arabidopsis thaliana] gi|20856179|gb|AAM26652.1| At1g22850/F29G20_19 [Arabidopsis thaliana] gi|332192175|gb|AEE30296.1| SNARE associated Golgi protein family [Arabidopsis thaliana]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 132/168 (78%), Gaps = 8/168 (4%)

Query: 30  FKPHRRFHFVKPCSSLKQTKKQNTLQK-STTNAPRSLGWFFNPKGDDDDNNNRIQGNGMD 88
           F+ ++RFHF+KPCSSLKQTKK+      ST   P+SL WFFN K  +D+N+     + + 
Sbjct: 36  FRLYKRFHFLKPCSSLKQTKKKKQQSLPSTAPPPQSLRWFFNSKSTNDENDE----DDVK 91

Query: 89  AESE---GLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPA 145
           +ES+   G EGD A+KG+ILAGVLL+  VGGF  +GYVY+DQIN FLTQFS +IEGYG A
Sbjct: 92  SESDDDGGSEGDAAIKGTILAGVLLIGTVGGFAGVGYVYRDQINTFLTQFSTYIEGYGTA 151

Query: 146 GYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGS 193
           GYALF+AVYAGLEILAIPA+PLTMSAGLLFG + GTIIVSISGT++ S
Sbjct: 152 GYALFIAVYAGLEILAIPALPLTMSAGLLFGPLIGTIIVSISGTMAAS 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486778|gb|ABK95224.1| unknown [Populus trichocarpa]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 148/201 (73%), Gaps = 25/201 (12%)

Query: 1   MRTLV-LRPQYHCHQPPSCFLTSSNS------FIHSFKPHRRFHFVKPCSSLKQTKKQN- 52
           MRTL+  RP       P C  ++ NS      F +S + ++RFHF+ PCSSLKQ KKQ  
Sbjct: 1   MRTLLNSRP---LTPLPPCLASNFNSSPFRSLFHYSLRTNKRFHFLSPCSSLKQKKKQQQ 57

Query: 53  TLQKSTTNAPRSLGWFFNPKGDDDDNNNRIQGNGMDAESEGLEGDTAVKGSILAGVLLLV 112
           TL+K  TNAP+S+ WF N KGDD +              EGLEGDTA KG++LAGVLL+ 
Sbjct: 58  TLRK--TNAPQSVRWFLNTKGDDSE------------AEEGLEGDTAFKGTLLAGVLLVG 103

Query: 113 VVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAG 172
           VVGGFG +GY+YKDQINAFL QFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAG
Sbjct: 104 VVGGFGAVGYIYKDQINAFLNQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAG 163

Query: 173 LLFGSVTGTIIVSISGTVSGS 193
           LLFGS+ GTIIVSISGT + S
Sbjct: 164 LLFGSLIGTIIVSISGTAAAS 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145050|ref|XP_002325508.1| predicted protein [Populus trichocarpa] gi|222862383|gb|EEE99889.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 133/166 (80%), Gaps = 15/166 (9%)

Query: 29  SFKPHRRFHFVKPCSSLKQTKKQN-TLQKSTTNAPRSLGWFFNPKGDDDDNNNRIQGNGM 87
           S + ++RFHF+ PCSSLKQ KKQ  TL+K  TNAP+S+ WF N KGDD +          
Sbjct: 1   SLRTNKRFHFLSPCSSLKQKKKQQQTLRK--TNAPQSVRWFLNTKGDDSE---------- 48

Query: 88  DAESEGLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGY 147
               EGLEGDTA KG++LAGVLL+ VVGGFG +GY+YKDQINAFL QFSGFIEGYGPAGY
Sbjct: 49  --AEEGLEGDTAFKGTLLAGVLLVGVVGGFGAVGYIYKDQINAFLNQFSGFIEGYGPAGY 106

Query: 148 ALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGS 193
           ALFVAVYAGLEILAIPAIPLTMSAGLLFGS+ GTIIVSISGT + S
Sbjct: 107 ALFVAVYAGLEILAIPAIPLTMSAGLLFGSLIGTIIVSISGTAAAS 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740945|emb|CBI31257.3| unnamed protein product [Vitis vinifera]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 122/160 (76%), Gaps = 26/160 (16%)

Query: 34  RRFHFVKPCSSLKQTKKQNTLQKSTTNAPRSLGWFFNPKGDDDDNNNRIQGNGMDAESEG 93
           +RFHF+KPCSSLKQTKKQ     S +NAP+SL WF NPK                     
Sbjct: 39  KRFHFLKPCSSLKQTKKQLQKTSSGSNAPQSLRWFLNPK--------------------- 77

Query: 94  LEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAV 153
                ++KG++LAG+LL+ VVGGF T+GYVY+DQINAFLTQFSGFIEGYGPAGYALFVAV
Sbjct: 78  -----SIKGTLLAGLLLVGVVGGFATVGYVYRDQINAFLTQFSGFIEGYGPAGYALFVAV 132

Query: 154 YAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGS 193
           YAGLEILAIPAIPLTMSAGLLFGS TGTIIVSISGTV+ S
Sbjct: 133 YAGLEILAIPAIPLTMSAGLLFGSFTGTIIVSISGTVAAS 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495562|gb|AFK35847.1| unknown [Lotus japonicus]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 130/189 (68%), Gaps = 15/189 (7%)

Query: 11  HCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPCSSLKQTKKQNT-----LQKSTTNAPRSL 65
           H   PPS  L         F  HRRFHF+ PCSSL+QTKKQ       L K  T AP   
Sbjct: 16  HNFSPPSSSLI--------FTSHRRFHFLTPCSSLRQTKKQQQQQQQQLTKINT-APSGF 66

Query: 66  GWFFNPKGDDDDNNNRIQGNGMDAESE-GLEGDTAVKGSILAGVLLLVVVGGFGTMGYVY 124
              F+PK DDDD+++    +    + +   +  TA+KG++LAGVLLL  VGGF  +GY+Y
Sbjct: 67  KRLFSPKPDDDDDDDDDDDDDDGDKKQPDSDTGTALKGTLLAGVLLLGFVGGFAAVGYIY 126

Query: 125 KDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIV 184
           +D IN+FL Q S FIEGYGP GYA+FVAVYAGLEILAIPAIPLTMSAGLLFGSVTGT+IV
Sbjct: 127 RDPINSFLNQLSLFIEGYGPTGYAIFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTVIV 186

Query: 185 SISGTVSGS 193
           SISGTV+ S
Sbjct: 187 SISGTVAAS 195

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470489|ref|XP_003605529.1| TVP38/TMEM64 family membrane protein slr0305 [Medicago truncatula] gi|355506584|gb|AES87726.1| TVP38/TMEM64 family membrane protein slr0305 [Medicago truncatula]

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/176 (58%), Positives = 129/176 (73%), Gaps = 5/176 (2%)

Query: 21  TSSNSFIHSFKPHRRFHFVKPCSSLKQTKKQNTLQKSTTNAPRSLGWFFNPKGDDDDNNN 80
           T++N    +F  ++ FHF+ P SSLKQTKKQ +   +T   P  L   FNPK ++D+++ 
Sbjct: 20  TNNNRLSTTFSSYKCFHFLTPHSSLKQTKKQPSRINNTN--PSRLKRLFNPKNENDNDDK 77

Query: 81  RIQGNGMDAESEGLEGD---TAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSG 137
             +      ESE  E +    A+KG++LAG LL+  VGGF ++GY+Y++ IN FL QFSG
Sbjct: 78  NEKKKKKRGESEKDEEEDNGVALKGTLLAGFLLVGFVGGFASVGYIYREPINTFLNQFSG 137

Query: 138 FIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGS 193
           FIEGYG AGYALFVAVYAGLEILAIPAIPLTMSAGLLFGS+TGTIIVSISGTV+ S
Sbjct: 138 FIEGYGSAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLTGTIIVSISGTVAAS 193

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2017769	344	AT1G22850 "AT1G22850" [Arabido	0.712	0.424	0.520	2.2e-34

TAIR|locus:2017769 AT1G22850 "AT1G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 77/148 (52%), Positives = 94/148 (63%)

Query:    29 SFKPHRRFHFVKPCSXXXXXXXXXXXXXXXXXAP-RSLGWFFNPKGDDDDNNNRIQGNGM 87
             SF+ ++RFHF+KPCS                  P +SL WFFN K  +D+N+     +  
Sbjct:    35 SFRLYKRFHFLKPCSSLKQTKKKKQQSLPSTAPPPQSLRWFFNSKSTNDENDEDDVKSES 94

Query:    88 DAESEGLEGDTAVKGSIXXXXXXXXXXXXXXTMGYVYKDQINAFLTQFSGFIEGYGPAGY 147
             D +  G EGD A+KG+I               +GYVY+DQIN FLTQFS +IEGYG AGY
Sbjct:    95 DDDG-GSEGDAAIKGTILAGVLLIGTVGGFAGVGYVYRDQINTFLTQFSTYIEGYGTAGY 153

Query:   148 ALFVAVYAGLEILAIPAIPLTMSAGLLF 175
             ALF+AVYAGLEILAIPA+PLTMSAGLLF
Sbjct:   154 ALFIAVYAGLEILAIPALPLTMSAGLLF 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       156   0.00073  106 3  11 22  0.44    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.68u 0.12s 13.80t   Elapsed:  00:00:01
  Total cpu time:  13.68u 0.12s 13.80t   Elapsed:  00:00:01
  Start:  Sat May 11 07:52:12 2013   End:  Sat May 11 07:52:13 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
COG0398	223	COG0398, COG0398, Uncharacterized conserved protei	3e-09

>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown]

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 103 SILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYAL-FVAVYAGLEILA 161
            +LA +L L V+ G   +G +              +I+ YG  G  + F+ +Y    +  
Sbjct: 9   KLLAALLFLGVIIGIIYLGLLVLLLDPE---TLREWIQAYGALGPLVFFILLYLVATLPI 65

Query: 162 IPAIPLTMSAGLLFGSVTGTIIVSISGTVSGS 193
           IP   LT++ GLLFG   G +   I G  +GS
Sbjct: 66  IPGSILTLAGGLLFGPFLGFLYSLI-GATAGS 96

Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
COG0398	223	Uncharacterized conserved protein [Function unknow	99.65
KOG3140	275	consensus Predicted membrane protein [Function unk	98.43
PF09335	123	SNARE_assoc: SNARE associated Golgi protein; Inter	98.33
PRK10847	219	hypothetical protein; Provisional	98.08
COG0586	208	DedA Uncharacterized membrane-associated protein [	97.27
COG1238	161	Predicted membrane protein [Function unknown]	95.84
COG4852	134	Predicted membrane protein [Function unknown]	94.24
PLN02953	403	phosphatidate cytidylyltransferase	92.0
PF07155	169	ECF-ribofla_trS: ECF-type riboflavin transporter,	86.81
TIGR02359	160	thiW thiW protein. Levels of thiamine pyrophosphat	85.74
COG0398	223	Uncharacterized conserved protein [Function unknow	84.79
PRK01844	72	hypothetical protein; Provisional	84.64
PF05915	115	DUF872: Eukaryotic protein of unknown function (DU	81.1
PRK09609	312	hypothetical protein; Provisional	80.36

>COG0398 Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=1.5e-15  Score=131.31  Aligned_cols=79  Identities=24%  Similarity=0.380  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhhCChHHHH-HHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028702          127 QINAFLTQFSGFIEGYGPAGYAL-FVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS  205 (205)
Q Consensus       127 ~i~~~l~~L~~~i~~~G~~gpl~-filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~lgRs  205 (205)
                      ......+.+++|++++|.+++++ |++.++..++.++|.+++++++|++||+++|++++++|+++||+++|+++|+++|+
T Consensus        30 ~~~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~  109 (223)
T COG0398          30 VLLLDPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRD  109 (223)
T ss_pred             HhccCHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34456678899999999999999 77777777788899999999999999999999999999999999999999999985

>KOG3140 consensus Predicted membrane protein [Function unknown]

Probab=98.43  E-value=1.7e-07  Score=84.03  Aligned_cols=74  Identities=30%  Similarity=0.435  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028702          132 LTQFSGFIEGYGPAGYALFVAVYAGLEILAIP-AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS  205 (205)
Q Consensus       132 l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP-~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~lgRs  205 (205)
                      -..+.+|.+.+.....+.|++.|+..+.+.+| ..++++.+|++||+|.|++++++++++||++||+++++++|.
T Consensus        82 ~~vl~~y~~~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~  156 (275)
T KOG3140|consen   82 GAVLRKYKATYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRP  156 (275)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHH
Confidence            34567778888888899999999999999999 899999999999999999999999999999999999999883

>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins

Probab=98.33  E-value=9e-07  Score=67.14  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702          162 IPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFR  204 (205)
Q Consensus       162 iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~lgR  204 (205)
                      +|+.++.+++|++||++.|++++++|+++|+.++|+++|++++
T Consensus         1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~   43 (123)
T PF09335_consen    1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGR   43 (123)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6999999999999999999999999999999999999999984

The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].

>PRK10847 hypothetical protein; Provisional

Probab=98.08  E-value=1.6e-05  Score=68.22  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             HHHHHHHhhCChHHHH-HHHHHHHH---HHhcCChHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702          134 QFSGFIEGYGPAGYAL-FVAVYAGL---EILAIPAIPLTMSAGLLFG-------SVTGTIIVSISGTVSGSKCCIFDCPI  202 (205)
Q Consensus       134 ~L~~~i~~~G~~gpl~-filiy~l~---~vl~iP~~~LtlaaG~LFG-------~~~Gtlls~iGatlGA~laFlLgR~l  202 (205)
                      .+.++++++|.|++.+ |++++.=.   ...++|+..+.+++|++.+       ++..++++++|+++|+.++|++||++
T Consensus        17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~   96 (219)
T PRK10847         17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF   96 (219)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567788899888653 33333322   1235898889999998865       45778899999999999999999998


Q ss_pred             cc
Q 028702          203 FR  204 (205)
Q Consensus       203 gR  204 (205)
                      ||
T Consensus        97 G~   98 (219)
T PRK10847         97 GE   98 (219)
T ss_pred             CH
Confidence            86

>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]

Probab=97.27  E-value=0.0011  Score=56.78  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=40.1

Q ss_pred             hcCChHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702          160 LAIPAIPLTMSAGLL-----FGSVTGTIIVSISGTVSGSKCCIFDCPIFR  204 (205)
Q Consensus       160 l~iP~~~LtlaaG~L-----FG~~~Gtlls~iGatlGA~laFlLgR~lgR  204 (205)
                      .++|+.++.+++|++     +.++.-.+.+.+|+++|+.+.|++||++|+
T Consensus        34 ~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~   83 (208)
T COG0586          34 PPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGR   83 (208)
T ss_pred             CCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Confidence            468899999999987     567788889999999999999999999986

>COG1238 Predicted membrane protein [Function unknown]

Probab=95.84  E-value=0.042  Score=46.08  Aligned_cols=57  Identities=14%  Similarity=0.243  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702          148 ALFVAVYAGLEILAIPAIPLTMSAGLL-FGSVTGTIIVSISGTVSGSKCCIFDCPIFR  204 (205)
Q Consensus       148 l~filiy~l~~vl~iP~~~LtlaaG~L-FG~~~Gtlls~iGatlGA~laFlLgR~lgR  204 (205)
                      .+|+..++-++++++|..++-+.--.. +-++.=.+++.+|+++|++++|++||++.+
T Consensus        21 ~Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~   78 (161)
T COG1238          21 GLFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPE   78 (161)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchH
Confidence            377778888888889954443332222 778888999999999999999999998764

>COG4852 Predicted membrane protein [Function unknown]

Probab=94.24  E-value=0.75  Score=37.40  Aligned_cols=68  Identities=18%  Similarity=0.257  Sum_probs=47.0

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHHHhc--CCh-----HHHHHHHHhhhhhH--------------------------H
Q 028702          133 TQFSGFIEGYGPAGYALFVAVYAGLEILA--IPA-----IPLTMSAGLLFGSV--------------------------T  179 (205)
Q Consensus       133 ~~L~~~i~~~G~~gpl~filiy~l~~vl~--iP~-----~~LtlaaG~LFG~~--------------------------~  179 (205)
                      ..+-+.+.++.+.-.++|-++|++...++  .|+     .-.++.+|.+||.+                          |
T Consensus        32 ~~iGdlm~Dfr~~PAiiFYlIYv~gltff~l~P~~~kgs~t~alL~GAl~G~~~YaTYDLTN~Atik~W~~~~Ti~Di~W  111 (134)
T COG4852          32 PYIGDLMGDFRLAPAIIFYLIYVVGLTFFVLSPGLEKGSWTYALLNGALYGLVCYATYDLTNLATIKDWPTTITIIDICW  111 (134)
T ss_pred             HHHhhhhhhcccchHHHHHHHHHhhhheeEeccccccCccHHHHHhhhHhhhhheeeeccccchhhcCCceeeehHHHHH
Confidence            33444455666777788889999976543  673     56788899999753                          5


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccc
Q 028702          180 GTIIVSISGTVSGSKCCIFDCPIFR  204 (205)
Q Consensus       180 Gtlls~iGatlGA~laFlLgR~lgR  204 (205)
                      |++++    +++|+++|++-|++.|
T Consensus       112 Gt~vs----avaa~i~flV~~~~~~  132 (134)
T COG4852         112 GTFVS----AVAAVIGFLVTRYFLR  132 (134)
T ss_pred             HHHHH----HHHHHHHHhheeeecc
Confidence            55554    4556677999888765

>PLN02953 phosphatidate cytidylyltransferase

Probab=92.00  E-value=3.1  Score=39.78  Aligned_cols=19  Identities=5%  Similarity=-0.115  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHhhhcccC
Q 028702          187 SGTVSGSKCCIFDCPIFRS  205 (205)
Q Consensus       187 GatlGA~laFlLgR~lgRs  205 (205)
                      ....+=+.+|+.||.+||.
T Consensus       277 ~vw~~Di~AY~~G~~fGk~  295 (403)
T PLN02953        277 GVIATDTFAFLGGKAFGRT  295 (403)
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            3444556778888888873

>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins

Probab=86.81  E-value=2.3  Score=34.35  Aligned_cols=32  Identities=31%  Similarity=0.379  Sum_probs=27.3

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 028702          164 AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKC  195 (205)
Q Consensus       164 ~~~LtlaaG~LFG~~~Gtlls~iGatlGA~la  195 (205)
                      +....+.+|++||+..|.+...+|..++..+.
T Consensus        38 ~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~   69 (169)
T PF07155_consen   38 GSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS   69 (169)
T ss_pred             hhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence            46788999999999999999988888887643

The function of this family is unknown.; GO: 0016020 membrane

>TIGR02359 thiW thiW protein

Probab=85.74  E-value=2.7  Score=35.24  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=25.4

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028702          164 AIPLTMSAGLLFGSVTGTIIVSISGTVSGSK  194 (205)
Q Consensus       164 ~~~LtlaaG~LFG~~~Gtlls~iGatlGA~l  194 (205)
                      ..+.++.+|++||||+|.+...++..++..+
T Consensus        34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~   64 (160)
T TIGR02359        34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTL   64 (160)
T ss_pred             hHHHHHHHHHHHchHHHHHHHHHHHHHHHHh
Confidence            5788999999999999988887777666543

Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

>COG0398 Uncharacterized conserved protein [Function unknown]

Probab=84.79  E-value=21  Score=31.07  Aligned_cols=55  Identities=18%  Similarity=0.062  Sum_probs=34.2

Q ss_pred             HHHHhhhhcHHHHH------HHHHHHHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhh
Q 028702          116 GFGTMGYVYKDQIN------AFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFG  176 (205)
Q Consensus       116 ~~~l~~~l~~~~i~------~~l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG  176 (205)
                      .|.+.++...+..+      +..+.+.++++++|.+.      +..+..+-.+|..+++.++|.---
T Consensus        99 ~Fll~R~~gr~~~~~~~~~~~~~~~~~~~~~~~g~~~------i~~lrl~P~~P~~lvn~aaglt~i  159 (223)
T COG0398          99 AFLLARYLGRDWVLKFVGGKEKVQRIDAGLERNGFWA------ILLLRLIPIFPFDLVNYAAGLTGI  159 (223)
T ss_pred             HHHHHHHHhHHHHHHHhcccHHHHHHHHHHHhCChHH------HHHHHHhhcCCHHHHHHHHhccCC
Confidence            34566666666554      35567888888888332      222333345888888888885543

>PRK01844 hypothetical protein; Provisional

Probab=84.64  E-value=1  Score=33.45  Aligned_cols=28  Identities=4%  Similarity=-0.078  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702          177 SVTGTIIVSISGTVSGSKCCIFDCPIFR  204 (205)
Q Consensus       177 ~~~Gtlls~iGatlGA~laFlLgR~lgR  204 (205)
                      .|...++.+++..+|++++|+++|+..+
T Consensus         3 ~~~~I~l~I~~li~G~~~Gff~ark~~~   30 (72)
T PRK01844          3 IWLGILVGVVALVAGVALGFFIARKYMM   30 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677888999999999999998653

>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins

Probab=81.10  E-value=3.3  Score=32.94  Aligned_cols=17  Identities=18%  Similarity=-0.048  Sum_probs=10.4

Q ss_pred             HHHHHHHhcCChHHHHH
Q 028702          153 VYAGLEILAIPAIPLTM  169 (205)
Q Consensus       153 iy~l~~vl~iP~~~Ltl  169 (205)
                      +.++..++++|+.--+.
T Consensus        79 llilG~L~fIPG~Y~~~   95 (115)
T PF05915_consen   79 LLILGILCFIPGFYHTR   95 (115)
T ss_pred             HHHHHHHHHhccHHHHH
Confidence            44556677799654444

The function of this currently unknown.

>PRK09609 hypothetical protein; Provisional

Probab=80.36  E-value=4.3  Score=37.61  Aligned_cols=29  Identities=21%  Similarity=0.216  Sum_probs=23.6

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028702          166 PLTMSAGLLFGSVTGTIIVSISGTVSGSK  194 (205)
Q Consensus       166 ~LtlaaG~LFG~~~Gtlls~iGatlGA~l  194 (205)
                      +.+..+|++|||++|.+...+...+|..+
T Consensus        45 IPviI~G~LFGPv~G~ivG~lsDLLs~li   73 (312)
T PRK09609         45 LPIKITGFIFGPIVGFFTGLLSDLISFLF   73 (312)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHHh
Confidence            66889999999999988888777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00