Citrus Sinensis ID: 028732

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
MGSVTCNPLAPPSTHLLLNPSKIPKFCHSRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVRS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccEEcHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEccccccccccccccccc
cccccccccccccccccccHHHHHHHccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcEcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEcccccccccccccc
mgsvtcnplappsthlllnpskipkfchsrrqlhgsqRASKIIAYyglktppykldalepymskrtlEVHWGELHRGYVEGLNKHlakddvlygyTLDELVKVSynsgnplpvfnnavqvwnhdffwesmqpgggdipkygVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKtsnainplvwndivrs
mgsvtcnplappsthlllnPSKIPKFCHSRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLavvktsnainplvwndivrs
MGSVTCNPLAPPSTHLLLNPSKIPKFCHSRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVRS
**********************IPKFCH********QRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIV**
********************************************YYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGG**IPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWN*****
MGSVTCNPLAPPSTHLLLNPSKIPKFCHSRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVRS
*****C****PPSTHLLLNPSKIPKFCHSRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVW******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGSVTCNPLAPPSTHLLLNPSKIPKFCHSRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query204 2.2.26 [Sep-21-2011]
Q9FMX0263 Superoxide dismutase [Fe] yes no 0.789 0.612 0.807 2e-75
Q5VSB7255 Superoxide dismutase [Fe] yes no 0.887 0.709 0.641 1e-65
Q9LU64305 Superoxide dismutase [Fe] no no 0.769 0.514 0.520 5e-45
P22302202 Superoxide dismutase [Fe] N/A no 0.740 0.747 0.559 1e-44
P28759248 Superoxide dismutase [Fe] no no 0.789 0.649 0.485 4e-38
P21276212 Superoxide dismutase [Fe] no no 0.764 0.735 0.522 1e-37
Q5VRL3391 Superoxide dismutase [Fe] no no 0.715 0.373 0.439 2e-30
Q8YSZ1200 Superoxide dismutase [Fe] yes no 0.700 0.715 0.442 9e-29
P31108192 Superoxide dismutase [Fe] yes no 0.710 0.755 0.453 1e-28
P77968199 Superoxide dismutase [Fe] N/A no 0.730 0.748 0.427 3e-28
>sp|Q9FMX0|SODF3_ARATH Superoxide dismutase [Fe] 3, chloroplastic OS=Arabidopsis thaliana GN=FSD3 PE=1 SV=1 Back     alignment and function desciption
 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 145/161 (90%)

Query: 41  KIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDEL 100
           K+ AYYGLKTPPY LDALEPYMS+RTLEVHWG+ HRGYV+ LNK L KDD LYGYT++EL
Sbjct: 45  KVEAYYGLKTPPYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEEL 104

Query: 101 VKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKF 160
           +K +YN+GNPLP FNNA QV+NHDFFWESMQPGGGD P+ GVLEQI+KDFGSFTNF+EKF
Sbjct: 105 IKATYNNGNPLPEFNNAAQVYNHDFFWESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKF 164

Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDI 201
             AALT FGSG+VWLVLKREERRL VVKTSNAINPLVW+DI
Sbjct: 165 TNAALTQFGSGWVWLVLKREERRLEVVKTSNAINPLVWDDI 205
Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems (By similarity). Plays important role in chloroplast development, particularly in the maintenance of thylakoids membranes. Seems to act as a heterodimer with FSD2.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 5EC: .EC: 1EC: .EC: 1
>sp|Q5VSB7|SODF2_ORYSJ Superoxide dismutase [Fe] 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0143000 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU64|SODF2_ARATH Superoxide dismutase [Fe] 2, chloroplastic OS=Arabidopsis thaliana GN=FSD2 PE=1 SV=1 Back     alignment and function description
>sp|P22302|SODF_NICPL Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1 Back     alignment and function description
>sp|P28759|SODF_SOYBN Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1 Back     alignment and function description
>sp|P21276|SODF1_ARATH Superoxide dismutase [Fe] 1, chloroplastic OS=Arabidopsis thaliana GN=FSD1 PE=1 SV=4 Back     alignment and function description
>sp|Q5VRL3|SODF1_ORYSJ Superoxide dismutase [Fe] 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0115400 PE=2 SV=1 Back     alignment and function description
>sp|Q8YSZ1|SODF_NOSS1 Superoxide dismutase [Fe] OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=sodB PE=3 SV=3 Back     alignment and function description
>sp|P31108|SODF_LEGPH Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1 Back     alignment and function description
>sp|P77968|SODF_SYNY3 Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sodB PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
296085263 321 unnamed protein product [Vitis vinifera] 0.965 0.613 0.743 2e-83
225462551264 PREDICTED: superoxide dismutase [Fe], ch 0.965 0.746 0.743 3e-83
356575066262 PREDICTED: superoxide dismutase [Fe], ch 0.980 0.763 0.712 4e-83
345106297242 chloroplast iron superoxide dismutase va 0.926 0.780 0.740 6e-80
301322830250 chloroplast iron superoxide dismutase, p 0.926 0.756 0.740 8e-80
345018990250 chloroplast iron superoxide dismutase [D 0.926 0.756 0.740 9e-80
345106293215 chloroplast iron superoxide dismutase va 0.926 0.879 0.740 1e-79
255559792265 superoxide dismutase [fe], putative [Ric 0.946 0.728 0.690 2e-79
345106295212 chloroplast iron superoxide dismutase va 0.926 0.891 0.740 2e-79
345018996218 chloroplast iron superoxide dismutase [D 0.784 0.733 0.825 1e-76
>gi|296085263|emb|CBI28995.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 151/203 (74%), Positives = 173/203 (85%), Gaps = 6/203 (2%)

Query: 5   TCNPLAPPSTHLLLNPS----KIPKFCHSRR--QLHGSQRASKIIAYYGLKTPPYKLDAL 58
            CN   P S+H+LL       K PK  + R   Q HGSQ+ASK++A+YGLK PPYKLDAL
Sbjct: 61  CCNNSFPASSHVLLTDLSQRWKCPKLQNLRHKGQFHGSQKASKVLAFYGLKAPPYKLDAL 120

Query: 59  EPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAV 118
           EP+MS+RTLE+HWG+ HRGYVEGLNK L KDD+LYG+TLDELVKV+YN+GNPLP FNNA 
Sbjct: 121 EPHMSRRTLEMHWGDHHRGYVEGLNKQLEKDDILYGHTLDELVKVTYNNGNPLPEFNNAA 180

Query: 119 QVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLK 178
           QVWNHDFFWESMQPGGGD+P+ G+LEQIEKDFGSFTNFKEKF+ AALTLFGSG+VWLVLK
Sbjct: 181 QVWNHDFFWESMQPGGGDMPRLGLLEQIEKDFGSFTNFKEKFLEAALTLFGSGWVWLVLK 240

Query: 179 REERRLAVVKTSNAINPLVWNDI 201
           R ER LAVVKTSNAINP+VW+DI
Sbjct: 241 RNERCLAVVKTSNAINPIVWDDI 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225462551|ref|XP_002267399.1| PREDICTED: superoxide dismutase [Fe], chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575066|ref|XP_003555663.1| PREDICTED: superoxide dismutase [Fe], chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|345106297|gb|AEN71834.1| chloroplast iron superoxide dismutase variant 3 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|301322830|gb|ADK70231.1| chloroplast iron superoxide dismutase, partial [Dimocarpus longan] Back     alignment and taxonomy information
>gi|345018990|gb|ADK70232.2| chloroplast iron superoxide dismutase [Dimocarpus longan] gi|345018992|gb|ADK70233.2| chloroplast iron superoxide dismutase [Dimocarpus longan] gi|345018994|gb|ADK70234.2| chloroplast iron superoxide dismutase [Dimocarpus longan] gi|345018998|gb|ADK70236.2| chloroplast iron superoxide dismutase [Dimocarpus longan] Back     alignment and taxonomy information
>gi|345106293|gb|AEN71832.1| chloroplast iron superoxide dismutase variant 1 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|255559792|ref|XP_002520915.1| superoxide dismutase [fe], putative [Ricinus communis] gi|223539881|gb|EEF41460.1| superoxide dismutase [fe], putative [Ricinus communis] Back     alignment and taxonomy information
>gi|345106295|gb|AEN71833.1| chloroplast iron superoxide dismutase variant 2 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|345018996|gb|ADK70235.2| chloroplast iron superoxide dismutase [Dimocarpus longan] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
TAIR|locus:2166953263 FSD3 "Fe superoxide dismutase 0.975 0.756 0.688 5.3e-72
UNIPROTKB|Q5VSB7255 LOC_Os06g05110 "Superoxide dis 0.887 0.709 0.641 3e-62
TAIR|locus:2176167305 FSD2 "AT5G51100" [Arabidopsis 0.921 0.616 0.469 1e-43
TAIR|locus:2117273212 FSD1 "Fe superoxide dismutase 0.764 0.735 0.522 3.6e-41
TIGR_CMR|NSE_0843205 NSE_0843 "superoxide dismutase 0.730 0.726 0.426 4.4e-29
UNIPROTKB|P0AGD3193 sodB [Escherichia coli K-12 (t 0.705 0.746 0.450 1.9e-28
UNIPROTKB|Q0C4B8220 sodB "Superoxide dismutase" [H 0.696 0.645 0.427 3.5e-27
TIGR_CMR|APH_0371206 APH_0371 "Fe superoxide dismut 0.735 0.728 0.412 3.5e-27
TIGR_CMR|VC_2045194 VC_2045 "superoxide dismutase, 0.705 0.742 0.437 5.7e-27
TIGR_CMR|CPS_3476194 CPS_3476 "superoxide dismutase 0.676 0.711 0.434 7.3e-27
TAIR|locus:2166953 FSD3 "Fe superoxide dismutase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 137/199 (68%), Positives = 159/199 (79%)

Query:     3 SVTCNPLAPPSTHLLLNPSKIPKFCHSRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYM 62
             + +C      S+  L +P  +      RR+   S+   K+ AYYGLKTPPY LDALEPYM
Sbjct:     7 TTSCFYTISDSSIRLKSPKLLNLSNQQRRRSLRSRGGLKVEAYYGLKTPPYPLDALEPYM 66

Query:    63 SKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWN 122
             S+RTLEVHWG+ HRGYV+ LNK L KDD LYGYT++EL+K +YN+GNPLP FNNA QV+N
Sbjct:    67 SRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEELIKATYNNGNPLPEFNNAAQVYN 126

Query:   123 HDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREER 182
             HDFFWESMQPGGGD P+ GVLEQI+KDFGSFTNF+EKF  AALT FGSG+VWLVLKREER
Sbjct:   127 HDFFWESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKFTNAALTQFGSGWVWLVLKREER 186

Query:   183 RLAVVKTSNAINPLVWNDI 201
             RL VVKTSNAINPLVW+DI
Sbjct:   187 RLEVVKTSNAINPLVWDDI 205
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009295 "nucleoid" evidence=IDA
GO:0004784 "superoxide dismutase activity" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009579 "thylakoid" evidence=IDA
GO:0042644 "chloroplast nucleoid" evidence=IDA
GO:0042646 "plastid nucleoid" evidence=IDA
GO:0055114 "oxidation-reduction process" evidence=IDA
GO:0019430 "removal of superoxide radicals" evidence=IC
UNIPROTKB|Q5VSB7 LOC_Os06g05110 "Superoxide dismutase [Fe] 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2176167 FSD2 "AT5G51100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117273 FSD1 "Fe superoxide dismutase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0843 NSE_0843 "superoxide dismutase, Fe" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
UNIPROTKB|P0AGD3 sodB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C4B8 sodB "Superoxide dismutase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0371 APH_0371 "Fe superoxide dismutase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2045 VC_2045 "superoxide dismutase, Fe" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3476 CPS_3476 "superoxide dismutase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5VSB7SODF2_ORYSJ1, ., 1, 5, ., 1, ., 10.64130.88720.7098yesno
Q9FMX0SODF3_ARATH1, ., 1, 5, ., 1, ., 10.80740.78920.6121yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.15.1.10.824
3rd Layer1.15.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
PLN02622261 PLN02622, PLN02622, iron superoxide dismutase 1e-118
PLN02685299 PLN02685, PLN02685, iron superoxide dismutase 1e-66
PLN02184212 PLN02184, PLN02184, superoxide dismutase [Fe] 4e-53
COG0605204 COG0605, SodA, Superoxide dismutase [Inorganic ion 1e-49
PRK10543193 PRK10543, PRK10543, superoxide dismutase; Provisio 5e-42
PTZ00078193 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Pro 1e-40
PRK10925206 PRK10925, PRK10925, superoxide dismutase; Provisio 9e-29
pfam0008182 pfam00081, Sod_Fe_N, Iron/manganese superoxide dis 8e-23
pfam02777106 pfam02777, Sod_Fe_C, Iron/manganese superoxide dis 4e-18
PLN02471231 PLN02471, PLN02471, superoxide dismutase [Mn] 3e-16
>gnl|CDD|166263 PLN02622, PLN02622, iron superoxide dismutase Back     alignment and domain information 
 Score =  336 bits (862), Expect = e-118
 Identities = 152/203 (74%), Positives = 170/203 (83%), Gaps = 7/203 (3%)

Query: 6   CNPLAPPSTHLLLNPS-----KIPKFCHSR--RQLHGSQRASKIIAYYGLKTPPYKLDAL 58
           CN   P S+  + +       K PK  + R  ++    QRASK++AYYGLKTPPY LDAL
Sbjct: 1   CNSSVPTSSCFVTDSDLSIRLKSPKLLNLRNKQRRRSLQRASKVVAYYGLKTPPYPLDAL 60

Query: 59  EPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAV 118
           EPYMS+RTLEVHWGE HRGYVEGLNK LAKDD+LYGYT+DELVKV+YN+GNPLP FNNA 
Sbjct: 61  EPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTYNNGNPLPEFNNAA 120

Query: 119 QVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLK 178
           QVWNHDFFWESMQPGGGD+P+ GVLEQIEKDFGSFTNF+EKF  AALTLFGSG+VWLVLK
Sbjct: 121 QVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLK 180

Query: 179 REERRLAVVKTSNAINPLVWNDI 201
           REERRL VVKTSNAINPLVW+DI
Sbjct: 181 REERRLEVVKTSNAINPLVWDDI 203

Length = 261
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase Back     alignment and domain information
>gnl|CDD|177838 PLN02184, PLN02184, superoxide dismutase [Fe] Back     alignment and domain information
>gnl|CDD|223678 COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|182534 PRK10543, PRK10543, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|185432 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Provisional Back     alignment and domain information
>gnl|CDD|182843 PRK10925, PRK10925, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|200985 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin domain Back     alignment and domain information
>gnl|CDD|202388 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal domain Back     alignment and domain information
>gnl|CDD|215262 PLN02471, PLN02471, superoxide dismutase [Mn] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 204
COG0605204 SodA Superoxide dismutase [Inorganic ion transport 100.0
PLN02622261 iron superoxide dismutase 100.0
PLN02184212 superoxide dismutase [Fe] 100.0
PRK10543193 superoxide dismutase; Provisional 100.0
PLN02685299 iron superoxide dismutase 100.0
PRK10925206 superoxide dismutase; Provisional 100.0
PTZ00078193 Superoxide dismutase [Fe]; Provisional 100.0
PLN02471231 superoxide dismutase [Mn] 100.0
KOG0876234 consensus Manganese superoxide dismutase [Inorgani 100.0
PF0008182 Sod_Fe_N: Iron/manganese superoxide dismutases, al 99.98
PF02777106 Sod_Fe_C: Iron/manganese superoxide dismutases, C- 99.88
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-58  Score=384.77  Aligned_cols=157  Identities=41%  Similarity=0.740  Sum_probs=146.5

Q ss_pred             cccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChh-hhcCCHHHHHHHHhcCCCCCcceechhhhhh
Q 028732           44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDV-LYGYTLDELVKVSYNSGNPLPVFNNAVQVWN  122 (204)
Q Consensus        44 ~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~-~~~~~l~~ii~~~~~~~~~~~ifnnag~~~N  122 (204)
                      +.|+||+|||+|++|||+||++||++||+||||+||++||+++++.++ +++.+++++++.......  .++||+|||+|
T Consensus         2 ~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~nn~~gh~N   79 (204)
T COG0605           2 MAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPA--ALFNNAGGHWN   79 (204)
T ss_pred             CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccH--HHHhcchhhhh
Confidence            679999999999999999999999999999999999999999999663 889999999876533221  59999999999


Q ss_pred             hHHHHhhcCCC-CCCCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCCCCc
Q 028732          123 HDFFWESMQPG-GGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDI  201 (204)
Q Consensus       123 H~~fw~~L~P~-~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~g~~  201 (204)
                      |+|||++|+|+ ++++|+|+|+++|+++|||||+||++|+++|.++|||||+|||+|+ .++|.|++|+|||+|++++.+
T Consensus        80 H~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~-~~kL~i~~t~n~~~p~~~~~~  158 (204)
T COG0605          80 HSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDP-DGKLEIVSTYNQDTPLMWGSV  158 (204)
T ss_pred             HHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECC-CCcEEEEeccCCCCcccCCCC
Confidence            99999999996 8889999999999999999999999999999999999999999998 679999999999999999999


Q ss_pred             cC
Q 028732          202 VR  203 (204)
Q Consensus       202 Pl  203 (204)
                      ||
T Consensus       159 Pi  160 (204)
T COG0605         159 PL  160 (204)
T ss_pred             ce
Confidence            97

>PLN02622 iron superoxide dismutase Back     alignment and domain information
>PLN02184 superoxide dismutase [Fe] Back     alignment and domain information
>PRK10543 superoxide dismutase; Provisional Back     alignment and domain information
>PLN02685 iron superoxide dismutase Back     alignment and domain information
>PRK10925 superoxide dismutase; Provisional Back     alignment and domain information
>PTZ00078 Superoxide dismutase [Fe]; Provisional Back     alignment and domain information
>PLN02471 superoxide dismutase [Mn] Back     alignment and domain information
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately Back     alignment and domain information
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
1unf_X238 The Crystal Structure Of The Eukaryotic Fesod From 9e-40
1my6_A199 The 1.6 A Structure Of Fe-superoxide Dismutase From 1e-34
1isa_A192 Structure-Function In E. Coli Iron Superoxide Dismu 3e-29
2nyb_A192 Crystal Structure Of E.Coli Iron Superoxide Dismuta 9e-29
1za5_A192 Q69h-Fesod Length = 192 1e-28
3js4_A227 Crystal Structure Of Iron Superoxide Dismutase From 7e-27
2a03_A206 Superoxide Dismutase Protein From Plasmodium Berghe 2e-26
2cw2_A226 Crystal Structure Of Superoxide Dismutase From P. M 7e-26
2awp_A198 Crystal Structure Of Plasmodium Knowlesi Structure 8e-26
2goj_A197 The Crystal Structure Of The Enzyme Fe-Superoxide D 9e-26
2bpi_A206 Stucture Of Iron Dependent Superoxide Dismutase Fro 1e-25
3tqj_A210 Structure Of The Superoxide Dismutase (Fe) (Sodb) F 1e-25
3lio_A192 X-Ray Structure Of The Iron Superoxide Dismutase Fr 3e-25
1dt0_A197 Cloning, Sequence, And Crystallographic Structure O 6e-25
3sdp_A195 The 2.1 Angstroms Resolution Structure Of Iron Supe 7e-25
2w7w_A194 The Crystal Structure Of Iron Superoxide Dismutase 1e-24
3h1s_A195 Crystal Structure Of Superoxide Dismutase From Fran 2e-24
3esf_A197 Crystal Structure Of The Enzyme Fe-Superoxide Dismu 2e-23
3tjt_A208 Crystal Structure Analysis Of The Superoxide Dismut 5e-23
2gpc_A194 The Crystal Structure Of The Enzyme Fe-Superoxide D 1e-22
1qnn_A191 Cambialistic Superoxide Dismutase From Porphyromona 2e-21
1y67_A229 Crystal Structure Of Manganese Superoxide Dismutase 2e-21
1ues_A191 Crystal Structure Of Porphyromonas Gingivalis Sod L 2e-21
3kky_A211 Structure Of Manganese Superoxide Dismutase From De 7e-21
2cdy_A231 Manganese Superoxide Dismutase (Mn-Sod) From Deinoc 7e-21
3cei_A213 Crystal Structure Of Superoxide Dismutase From Heli 2e-20
4f2n_A230 Crystal Structure Of Iron Superoxide Dismutase From 3e-20
1xuq_A212 Crystal Structure Of Soda-1 (Ba4499) From Bacillus 6e-20
1i08_A205 Crystal Structure Analysis Of The H30a Mutant Of Ma 9e-20
1vew_A205 Manganese Superoxide Dismutase From Escherichia Col 1e-19
1i0h_A205 Crystal Structure Of The E. Coli Manganese Superoxi 1e-19
1en4_A205 Crystal Structure Analysis Of The E. Coli Manganese 2e-19
1en6_A205 Crystal Structure Analysis Of The E. Coli Manganese 2e-19
1en5_A205 Crystal Structure Analysis Of The E. Coli Manganese 4e-19
2rcv_A202 Crystal Structure Of The Bacillus Subtilis Superoxi 4e-19
1gv3_A248 The 2.0 Angstrom Resolution Structure Of The Cataly 5e-19
1xre_A217 Crystal Structure Of Soda-2 (Ba5696) From Bacillus 9e-19
2cw3_A280 X-Ray Structure Of Pmsod2, Superoxide Dismutase Fro 2e-18
1em1_A198 X-Ray Crystal Structure For Human Manganese Superox 3e-18
1n0n_A199 Catalytic And Structural Effects Of Amino-Acid Subs 4e-18
1luw_A198 Catalytic And Structural Effects Of Amino-Acid Subs 8e-18
1ja8_A198 Kinetic Analysis Of Product Inhibition In Human Man 9e-18
3c3s_A198 Role Of A Glutamate Bridge Spanning The Dimeric Int 9e-18
1pl4_A198 Crystal Structure Of Human Mnsod Y166f Mutant Lengt 1e-17
1n0j_A199 The Structure Of Human Mitochondrial Mn3+ Superoxid 1e-17
3c3t_A198 Role Of A Glutamate Bridge Spanning The Dimeric Int 1e-17
1var_A198 Mitochondrial Manganese Superoxide Dismutase Varian 1e-17
1msd_A198 Comparison Of The Crystal Structures Of Genetically 1e-17
1qnm_A198 Human Manganese Superoxide Dismutase Mutant Q143n L 1e-17
1pm9_A198 Crystal Structure Of Human Mnsod H30n, Y166f Mutant 1e-17
2gds_A198 Interrupting The Hydrogen Bonding Network At The Ac 1e-17
2qkc_A196 Structural And Kinetic Study Of The Differences Bet 1e-17
2qka_A196 Structural And Kinetic Study Of The Differences Bet 1e-17
1szx_A198 Role Of Hydrogen Bonding In The Active Site Of Huma 2e-17
1ap5_A198 Tyr34->phe Mutant Of Human Mitochondrial Manganese 2e-17
1zte_A198 Contribution To Structure And Catalysis Of Tyrosine 3e-17
3mds_A203 Maganese Superoxide Dismutase From Thermus Thermoph 4e-17
1xil_A198 Hydrogen Bonding In Human Manganese Superoxide Dism 6e-17
2adp_A198 Nitrated Human Manganese Superoxide Dismutase Lengt 7e-17
1zuq_A198 Contribution To Structure And Catalysis Of Tyrosine 7e-17
1zsp_A198 Contribution To Structure And Catalysis Of Tyrosine 7e-17
2p4k_A198 Contribution To Structure And Catalysis Of Tyrosine 9e-17
1jr9_A202 Crystal Structure Of Manganese Superoxide Dismutase 1e-16
1xdc_A198 Hydrogen Bonding In Human Manganese Superoxide Dism 2e-16
4h3e_A241 Crystal Structure Of A Putative Iron Superoxide Dis 3e-16
1kkc_A221 Crystal Structure Of Aspergillus Fumigatus Mnsod Le 5e-15
1ma1_A205 Structure And Properties Of The Atypical Iron Super 7e-14
1ar4_A201 X-Ray Structure Analysis Of The Cambialistic Supero 4e-13
1wb8_A210 Iron Superoxide Dismutase (Fe-Sod) From The Hyperth 6e-12
1wb7_A210 Iron Superoxide Dismutase (Fe-Sod) From The Hyperth 2e-11
1gn6_A207 G152a Mutant Of Mycobacterium Tuberculosis Iron-Sup 5e-11
1ids_A207 X-Ray Structure Analysis Of The Iron-Dependent Supe 5e-11
1gn4_A207 H145e Mutant Of Mycobacterium Tuberculosis Iron-Sup 6e-11
1gn3_A207 H145q Mutant Of Mycobacterium Tuberculosis Iron-Sup 6e-11
1gn2_A207 S123c Mutant Of The Iron-Superoxide Dismutase From 1e-10
1b06_A210 Superoxide Dismutase From Sulfolobus Acidocaldarius 2e-10
3dc5_A195 Crystal Structure Of A Manganese Superoxide Dismuta 5e-10
3dc6_A198 Crystal Structure Of A Manganese Superoxide Dismuta 3e-09
3evk_A222 Crystal Structure Of The Metal-Bound Superoxide Dis 9e-08
3qvn_A206 Crystal Structure Of Cytosolic Mnsod3 From Candida 3e-07
3ak1_A214 Superoxide Dismutase From Aeropyrum Pernix K1, Apo- 4e-07
4ffk_A223 X-Ray Structure Of Iron Superoxide Dismutase From A 6e-07
3rn4_A215 Crystal Structure Of Iron-Substituted Sod2 From Sac 9e-06
3bfr_A215 The Crystal Structure Of Sod2 From Saccharomyces Ce 1e-05
3lsu_A207 Crystal Structure Of Sod2 From Saccharomyces Cerevi 3e-05
4e4e_A207 Crystal Structure Of The Y34f Mutant Of Saccharomyc 8e-05
1p7g_A222 Crystal Structure Of Superoxide Dismutase From Pyro 5e-04
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna Unguiculata Suggests A New Enzymatic Mechanism Length = 238 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (402), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 113/177 (63%), Gaps = 16/177 (9%)
Query: 37  QRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYT 96
           +   K+ A + LK PPY L+ LEP MS++TLE HWG+ HR YVE L K +   + L G +
Sbjct: 10  KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTE-LDGKS 68
Query: 97  LDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNF 156
           L+E++  +YN G+ LP FNNA QVWNHDFFWE M+PGGG  P   +LE IE+DFGSF  F
Sbjct: 69  LEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKF 128
Query: 157 KEKFIGAALTLFGSGYVWLVLKR---------------EERRLAVVKTSNAINPLVW 198
            ++F  AA T FGSG+ WL  K                E+ +L V+K+ NA+NPLVW
Sbjct: 129 LDEFKAAAATQFGSGWAWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVW 185
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation Of Epr And Structural Characteristics Length = 199 Back     alignment and structure
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase: Comparisons With The Manganese Enzyme From T. Thermophilus Length = 192 Back     alignment and structure
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e At 1.1 Angstrom Resolution Length = 192 Back     alignment and structure
>pdb|1ZA5|A Chain A, Q69h-Fesod Length = 192 Back     alignment and structure
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From Anaplasma Phagocytophilum Length = 227 Back     alignment and structure
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei Length = 206 Back     alignment and structure
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus Length = 226 Back     alignment and structure
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron Super-Oxide Dismutase Length = 198 Back     alignment and structure
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide Dismutase From Plasmodium Falciparum Length = 197 Back     alignment and structure
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P. Falciparum. Length = 206 Back     alignment and structure
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From Coxiella Burnetii Length = 210 Back     alignment and structure
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From Pseudoalteromonas Haloplanktis (Crystal Form I) Length = 192 Back     alignment and structure
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis Length = 197 Back     alignment and structure
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide Dismutase From Pseudomonas Ovalis Length = 195 Back     alignment and structure
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From Aliivibrio Salmonicida. Length = 194 Back     alignment and structure
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 195 Back     alignment and structure
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase Tbsodb2 From Trypanosoma Brucei Length = 197 Back     alignment and structure
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase From Clostridium Difficile Length = 208 Back     alignment and structure
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide Dismutase From Trypanosoma Cruzi Length = 194 Back     alignment and structure
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas Gingivalis Length = 191 Back     alignment and structure
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From Deinococcus Radiodurans Length = 229 Back     alignment and structure
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod Length = 191 Back     alignment and structure
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From Deinococcus Radiodurans In The Orthorhombic Space Group P212121: A Case Study Of Mistaken Identity Length = 211 Back     alignment and structure
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus Radiodurans Length = 231 Back     alignment and structure
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From Helicobacter Pylori Length = 213 Back     alignment and structure
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From Leishmania Major Length = 230 Back     alignment and structure
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus Anthracis At 1.8a Resolution. Length = 212 Back     alignment and structure
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese Superoxide Dismutase From E. Coli Length = 205 Back     alignment and structure
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli Length = 205 Back     alignment and structure
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide Dismutase Mutant Y174f At 1.35 Angstroms Resolution. Length = 205 Back     alignment and structure
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Q146h Mutant Length = 205 Back     alignment and structure
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Q146l Mutant Length = 205 Back     alignment and structure
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Y34f Mutant Length = 205 Back     alignment and structure
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide Dismutase Length = 202 Back     alignment and structure
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic Portion Of A Cyanobacterial Membrane-Bound Manganese Superoxide Dismutase Length = 248 Back     alignment and structure
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus Anthracis At 1.8a Resolution. Length = 217 Back     alignment and structure
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From Perkinsus Marinus Length = 280 Back     alignment and structure
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide Dismutase, Q143a Length = 198 Back     alignment and structure
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid Substitution At His30 In Human Manganese Superoxide Dismutase Length = 199 Back     alignment and structure
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid Substitution At His 30 In Human Manganese Superoxide Dismutase: Insertion Of Val Cgamma Into The Substrate Access Channel Length = 198 Back     alignment and structure
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant Length = 198 Back     alignment and structure
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide Dismutase Reveals A Novel Tetrameric Interface Of Two 4-Helix Bundles Length = 199 Back     alignment and structure
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With Ile 58 Replaced By Thr Length = 198 Back     alignment and structure
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically Engineered Human Manganese Superoxide Dismutase And Manganese Superoxide Dismutase From Thermus Thermophilus. Differences In Dimer-Dimer Interactions. Length = 198 Back     alignment and structure
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n Length = 198 Back     alignment and structure
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant Length = 198 Back     alignment and structure
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active Site Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between Human And E.Coli Manganese Superoxide Dismutases Length = 196 Back     alignment and structure
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between Human And E.Coli Manganese Superoxide Dismutases Length = 196 Back     alignment and structure
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Suerpoxide Dismutase Length = 198 Back     alignment and structure
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus Length = 203 Back     alignment and structure
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase Containing 3- Fluorotyrosine Length = 198 Back     alignment and structure
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From Bacillus Halodenitrificans Length = 202 Back     alignment and structure
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase Containing 3- Fluorotyrosine Length = 198 Back     alignment and structure
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase From Trypanosoma Cruzi Bound To Iron Length = 241 Back     alignment and structure
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod Length = 221 Back     alignment and structure
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide Dismutase From Methanobacterium Thermoautotrophicum Length = 205 Back     alignment and structure
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide Dismutase From Propionibacterium Shermanii Active With Fe Or Mn Length = 201 Back     alignment and structure
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The Hyperthermophile Sulfolobus Solfataricus. 2.3 A Resolution Structure Of Recombinant Protein With A Covalently Modified Tyrosin In The Active Site. Length = 210 Back     alignment and structure
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The Hyperthermophile Sulfolobus Solfataricus. Crystal Structure Of The Y41f Mutant. Length = 210 Back     alignment and structure
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis At 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions Length = 207 Back     alignment and structure
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From Mycobacterium Tuberculosis. Length = 207 Back     alignment and structure
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius Length = 210 Back     alignment and structure
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases From Caenorhabditis Elegans Length = 195 Back     alignment and structure
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases From Caenorhabditis Elegans Length = 198 Back     alignment and structure
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase From Pyrobaculum Aerophilum Length = 222 Back     alignment and structure
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida Albicans Length = 206 Back     alignment and structure
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form Length = 214 Back     alignment and structure
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From Acidilobus Saccharovorans Length = 223 Back     alignment and structure
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From Saccharomyces Cerevisiae Length = 215 Back     alignment and structure
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces Cerevisiae Length = 215 Back     alignment and structure
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae Length = 207 Back     alignment and structure
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces Cerevisiae Manganese Superoxide Dismutase Length = 207 Back     alignment and structure
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum Aerophilum Length = 222 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
1unf_X238 Iron superoxide dismutase; oxidoreductase, eukaryo 7e-76
3js4_A227 Superoxide dismutase; niaid, ssgcid, seattle struc 6e-70
1my6_A199 Iron (III) superoxide dismutase; iron speroxide di 3e-67
2cw3_A280 Pmsod2, iron superoxide dismutase; oxidoreductase; 3e-62
2cw2_A226 Superoxide dismutase 1; SOD, oxidoreductase; 1.86A 4e-62
2nyb_A192 Superoxide dismutase [FE]; iron superoxide dismuta 5e-62
3cei_A213 Superoxide dismutase; oxidoreductase; 2.40A {Helic 5e-62
3lio_A192 Iron superoxide dismutase; cold adaptation, flexib 9e-62
4f2n_A230 Superoxide dismutase; ssgcid, NIH, niaid, SBRI, em 1e-61
1dt0_A197 Superoxide dismutase; pseudomonas ovalis, oxidored 3e-61
2awp_A198 Iron super-oxide dismutase; structural genomics, s 8e-61
3tqj_A210 Superoxide dismutase [FE]; oxidoreductase; 2.00A { 1e-60
2gpc_A194 Iron superoxide dismutase; alpha+beta structure, o 1e-60
1uer_A191 SOD, superoxide dismutase; metal-specific, cambial 5e-60
3h1s_A195 Superoxide dismutase; SOBD, csgid, oxidoreductase, 9e-60
2rcv_A202 Superoxide dismutase [MN]; bacillus subtilis,super 7e-58
1gv3_A248 Manganese superoxide dismutase; anabaena PCC 7120, 1e-56
1xre_A217 SODA-2, superoxide dismutase; spine, oxidoreductas 2e-55
3kky_A211 Mnsod, superoxide dismutase [MN]; manganese, ME bi 1e-54
1mng_A203 Manganese superoxide dismutase; oxidoreductase(sup 9e-53
1ix9_A205 Mnsod, superoxide dismutase; manganese superoxide 1e-52
4ffk_A223 Superoxide dismutase; oxidoreductase, superoxide a 9e-48
1b06_A210 Protein (superoxide dismutase); oxidoreductase; 2. 1e-47
1ma1_A205 Superoxide dismutase; metal specificity, azide inh 5e-47
1ids_A207 Iron superoxide dismutase; 2.00A {Mycobacterium tu 1e-45
1bsm_A201 Superoxide dismutase; oxidoreductase; 1.35A {Propi 7e-45
3rn4_A215 Superoxide dismutase [MN], mitochondrial; mitochon 1e-44
1pl4_A198 Superoxide dismutase [MN], mitochondrial; oxidored 2e-44
1coj_A212 Protein (superoxide dismutase); oxidoreductase; 1. 4e-44
3ak2_A214 Superoxide dismutase [MN/FE]; cambialistic, oxidor 1e-43
3dc5_A195 Superoxide dismutase [MN] 2; alpha hairpin N domai 3e-43
1kkc_A221 Mnsod, manganese superoxide dismutase; homotetrame 1e-40
3qvn_A206 Manganese-containing superoxide dismutase; Mn supe 2e-39
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic, metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1 d.44.1.1 Length = 238 Back     alignment and structure
 Score =  227 bits (580), Expect = 7e-76
 Identities = 87/179 (48%), Positives = 113/179 (63%), Gaps = 16/179 (8%)

Query: 37  QRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYT 96
           +   K+ A + LK PPY L+ LEP MS++TLE HWG+ HR YVE L K +   + L G +
Sbjct: 10  KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTE-LDGKS 68

Query: 97  LDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNF 156
           L+E++  +YN G+ LP FNNA QVWNHDFFWE M+PGGG  P   +LE IE+DFGSF  F
Sbjct: 69  LEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKF 128

Query: 157 KEKFIGAALTLFGSGYVWLVLKR---------------EERRLAVVKTSNAINPLVWND 200
            ++F  AA T FGSG+ WL  K                E+ +L V+K+ NA+NPLVW  
Sbjct: 129 LDEFKAAAATQFGSGWAWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVWGG 187
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum} Length = 227 Back     alignment and structure
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1 Length = 199 Back     alignment and structure
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus} Length = 280 Back     alignment and structure
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} Length = 226 Back     alignment and structure
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A Length = 192 Back     alignment and structure
>3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori} Length = 213 Back     alignment and structure
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A Length = 192 Back     alignment and structure
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald biostructures, structural national institute of allergy and infectious diseases; 1.85A {Leishmania major} Length = 230 Back     alignment and structure
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1 Length = 197 Back     alignment and structure
>2awp_A Iron super-oxide dismutase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.00A {Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A Length = 198 Back     alignment and structure
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii} Length = 210 Back     alignment and structure
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A Length = 194 Back     alignment and structure
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A Length = 191 Back     alignment and structure
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp} Length = 195 Back     alignment and structure
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A Length = 202 Back     alignment and structure
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena SP} SCOP: a.2.11.1 d.44.1.1 Length = 248 Back     alignment and structure
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} Length = 217 Back     alignment and structure
>3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding, oxidoreductase, metal binding protein; 1.80A {Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A 2aw9_A Length = 211 Back     alignment and structure
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A Length = 203 Back     alignment and structure
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F mutant, hydrogen bond, reactivity, ultra-high resolution, oxidoreductase; 0.90A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A 1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A Length = 205 Back     alignment and structure
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A {Acidilobus saccharovorans} Length = 223 Back     alignment and structure
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A Length = 210 Back     alignment and structure
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide inactivation, oxidoreductase; 2.60A {Methanothermobacterthermautotrophicus} SCOP: a.2.11.1 d.44.1.1 Length = 205 Back     alignment and structure
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A Length = 207 Back     alignment and structure
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium freudenreichii subspshermanii} SCOP: a.2.11.1 d.44.1.1 PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A Length = 201 Back     alignment and structure
>3rn4_A Superoxide dismutase [MN], mitochondrial; mitochondrial manganese superoxide dismutase, iron-binding, mitochondrion, oxidoreductase; 1.79A {Saccharomyces cerevisiae} PDB: 3bfr_A 3lsu_A* Length = 215 Back     alignment and structure
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ... Length = 198 Back     alignment and structure
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} SCOP: a.2.11.1 d.44.1.1 Length = 212 Back     alignment and structure
>3ak2_A Superoxide dismutase [MN/FE]; cambialistic, oxidoreductase; 1.35A {Aeropyrum pernix} PDB: 3ak1_A 3ak3_A 1p7g_A 3evk_A Length = 214 Back     alignment and structure
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A Length = 195 Back     alignment and structure
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer, oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP: a.2.11.1 d.44.1.1 Length = 221 Back     alignment and structure
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase, oxidoreductase; 2.60A {Candida albicans} Length = 206 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 204
d1unfx191 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD 6e-28
d1gv3a1102 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD 6e-25
d1mnga192 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) 7e-25
d1jr9a190 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) 7e-25
d1uera184 a.2.11.1 (A:1-84) Cambialistic superoxide dismutas 9e-25
d1my6a188 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) 1e-24
d1ix9a190 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) 6e-24
d2nyba182 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) 2e-23
d1ma1a188 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) 3e-21
d1bsma186 a.2.11.1 (A:1-86) Cambialistic superoxide dismutas 4e-21
d1wb8a189 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) 5e-21
d1kkca184 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) 2e-20
d1p7ga192 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD 3e-20
d1coja189 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) 5e-20
d1idsa184 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) 4e-19
d2p4ka183 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) 3e-18
d1unfx2134 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSO 5e-13
d1wb8a2116 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD 9e-12
d1my6a2110 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD 9e-12
d1bsma2115 d.44.1.1 (A:87-201) Cambialistic superoxide dismut 1e-11
d1idsa2114 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD 4e-11
d1coja2122 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD 2e-10
d1ma1a2113 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD 3e-10
d1gv3a2111 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSO 7e-10
d1kkca2116 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD 7e-10
d1y67a2116 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD 7e-10
d2p4ka2115 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD 9e-10
d1mnga2111 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD 1e-09
d1p7ga2119 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSO 2e-09
d1ix9a2115 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD 5e-09
d2nyba2110 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD 6e-09
d1jr9a2111 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD 9e-09
d1dt0a2114 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD 4e-08
d1uera2107 d.44.1.1 (A:85-191) Cambialistic superoxide dismut 6e-07
>d1unfx1 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Length = 91 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Fe,Mn superoxide dismutase (SOD), N-terminal domain
family: Fe,Mn superoxide dismutase (SOD), N-terminal domain
domain: Fe superoxide dismutase (FeSOD)
species: Cowpea (Vigna unguiculata) [TaxId: 3917]

 Score = 99.0 bits (246), Expect = 6e-28
 Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 1/92 (1%)

Query: 41  KIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDEL 100
           K+ A + LK PPY L+ LEP MS++TLE HWG+ HR YVE L K +     L G +L+E+
Sbjct: 1   KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQV-VGTELDGKSLEEI 59

Query: 101 VKVSYNSGNPLPVFNNAVQVWNHDFFWESMQP 132
           +  +YN G+ LP FNNA QVWNHDFFWE M+P
Sbjct: 60  IVTAYNKGDILPAFNNAAQVWNHDFFWECMKP 91
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Length = 102 Back     information, alignment and structure
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Length = 92 Back     information, alignment and structure
>d1jr9a1 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Length = 90 Back     information, alignment and structure
>d1uera1 a.2.11.1 (A:1-84) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Length = 84 Back     information, alignment and structure
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Length = 88 Back     information, alignment and structure
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Length = 90 Back     information, alignment and structure
>d2nyba1 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Length = 82 Back     information, alignment and structure
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 88 Back     information, alignment and structure
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Length = 86 Back     information, alignment and structure
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 89 Back     information, alignment and structure
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Length = 84 Back     information, alignment and structure
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 92 Back     information, alignment and structure
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Length = 89 Back     information, alignment and structure
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 84 Back     information, alignment and structure
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1unfx2 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Length = 134 Back     information, alignment and structure
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 116 Back     information, alignment and structure
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Length = 110 Back     information, alignment and structure
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Length = 115 Back     information, alignment and structure
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 114 Back     information, alignment and structure
>d1coja2 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Length = 122 Back     information, alignment and structure
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 113 Back     information, alignment and structure
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Length = 111 Back     information, alignment and structure
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Length = 116 Back     information, alignment and structure
>d1y67a2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Deinococcus radiodurans [TaxId: 1299]} Length = 116 Back     information, alignment and structure
>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 119 Back     information, alignment and structure
>d1ix9a2 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d2nyba2 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Length = 111 Back     information, alignment and structure
>d1dt0a2 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD) {Pseudomonas ovalis [TaxId: 303]} Length = 114 Back     information, alignment and structure
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query204
d1gv3a1102 Mn superoxide dismutase (MnSOD) {Anabaena sp. [Tax 99.96
d1unfx191 Fe superoxide dismutase (FeSOD) {Cowpea (Vigna ung 99.96
d1my6a188 Fe superoxide dismutase (FeSOD) {Thermosynechococc 99.96
d1mnga192 Mn superoxide dismutase (MnSOD) {Thermus thermophi 99.95
d1uera184 Cambialistic superoxide dismutase {Porphyromonas g 99.95
d1jr9a190 Mn superoxide dismutase (MnSOD) {Bacillus halodeni 99.95
d2nyba182 Fe superoxide dismutase (FeSOD) {Escherichia coli 99.95
d1ix9a190 Mn superoxide dismutase (MnSOD) {Escherichia coli 99.94
d1p7ga192 Fe superoxide dismutase (FeSOD) {Archaeon Pyrobacu 99.94
d1bsma186 Cambialistic superoxide dismutase {Propionibacteri 99.94
d1idsa184 Fe superoxide dismutase (FeSOD) {Mycobacterium tub 99.93
d1ma1a188 Fe superoxide dismutase (FeSOD) {Archaeon Methanob 99.93
d1kkca184 Mn superoxide dismutase (MnSOD) {Aspergillus fumig 99.92
d2p4ka183 Mn superoxide dismutase (MnSOD) {Human (Homo sapie 99.92
d1wb8a189 Fe superoxide dismutase (FeSOD) {Archaeon Sulfolob 99.92
d1wb8a2116 Fe superoxide dismutase (FeSOD) {Archaeon Sulfolob 99.86
d1ma1a2113 Fe superoxide dismutase (FeSOD) {Archaeon Methanob 99.84
d1gv3a2111 Mn superoxide dismutase (MnSOD) {Anabaena sp. [Tax 99.84
d1mnga2111 Mn superoxide dismutase (MnSOD) {Thermus thermophi 99.84
d1idsa2114 Fe superoxide dismutase (FeSOD) {Mycobacterium tub 99.82
d2nyba2110 Fe superoxide dismutase (FeSOD) {Escherichia coli 99.82
d1my6a2110 Fe superoxide dismutase (FeSOD) {Thermosynechococc 99.81
d1p7ga2119 Fe superoxide dismutase (FeSOD) {Archaeon Pyrobacu 99.81
d1uera2107 Cambialistic superoxide dismutase {Porphyromonas g 99.8
d1bsma2115 Cambialistic superoxide dismutase {Propionibacteri 99.8
d1dt0a2114 Fe superoxide dismutase (FeSOD) {Pseudomonas ovali 99.8
d1unfx2134 Fe superoxide dismutase (FeSOD) {Cowpea (Vigna ung 99.8
d2p4ka2115 Mn superoxide dismutase (MnSOD) {Human (Homo sapie 99.79
d1jr9a2111 Mn superoxide dismutase (MnSOD) {Bacillus halodeni 99.79
d1ix9a2115 Mn superoxide dismutase (MnSOD) {Escherichia coli 99.77
d1coja189 Fe superoxide dismutase (FeSOD) {Aquifex pyrophilu 99.77
d1y67a2116 Mn superoxide dismutase (MnSOD) {Deinococcus radio 99.75
d1kkca2116 Mn superoxide dismutase (MnSOD) {Aspergillus fumig 99.74
d1coja2122 Fe superoxide dismutase (FeSOD) {Aquifex pyrophilu 99.73
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Fe,Mn superoxide dismutase (SOD), N-terminal domain
family: Fe,Mn superoxide dismutase (SOD), N-terminal domain
domain: Mn superoxide dismutase (MnSOD)
species: Anabaena sp. [TaxId: 1167]

Probab=99.96  E-value=4e-30  Score=193.21  Aligned_cols=91  Identities=30%  Similarity=0.415  Sum_probs=81.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHC--CCCCCCCEECHHH
Q ss_conf             01021027999997875897799899999999999999999998637923316999999998703--9999860202124
Q 028732           42 IIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYN--SGNPLPVFNNAVQ  119 (204)
Q Consensus        42 ~~~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~--~~~~~~ifn~a~~  119 (204)
                      ....|+||+|||+|++|||+||++||++||+|||++||++||+++++.++++++++++|++....  +..+..+||||||
T Consensus        10 ~~~pf~Lp~LPY~ydaLeP~Is~~Tm~~Hh~KHH~~YV~~lN~~l~~~~~~~~~~le~ii~~~~~~~~~~~~~v~nNagg   89 (102)
T d1gv3a1          10 GTNPAELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTVRNNGGG   89 (102)
T ss_dssp             CCTTCCCCCCSSCTTTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHTCGGGGGSCHHHHHHTGGGSCTTTHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78997599999984524111599999988988879999999999986188870679999985764147777999874425


Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             3455988863289
Q 028732          120 VWNHDFFWESMQP  132 (204)
Q Consensus       120 ~~NH~ffw~~L~p  132 (204)
                      +|||+|||+||+|
T Consensus        90 ~~NH~~fW~~l~P  102 (102)
T d1gv3a1          90 HLNHTIFWQIMSP  102 (102)
T ss_dssp             HHHHHHHHHTBCT
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9889999705494
>d1unfx1 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Back     information, alignment and structure
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1uera1 a.2.11.1 (A:1-84) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1jr9a1 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d2nyba1 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Back     information, alignment and structure
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2nyba2 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1dt0a2 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD) {Pseudomonas ovalis [TaxId: 303]} Back     information, alignment and structure
>d1unfx2 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Back     information, alignment and structure
>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d1ix9a2 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Back     information, alignment and structure
>d1y67a2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1coja2 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Back     information, alignment and structure