Citrus Sinensis ID: 028785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKARMSQQK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEEcccccEEEccccEEEEEEcccccccccccccccEEEEEEEEccccccccccccccccccccccccEEEEcccccccccEEEEEEcccccccEEEEEEEEEcccccEEEEccccccccccccEEEEEEcccccEEEEEEEEEEEEccEEEEEEEEEEHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccEEEccccEEEEEEEEEccccccccccccEEEEEEEEccccccccccccccccccccccccEEEEEcccccccccEEEEEcccccccEEEEEEEEEEccccEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTttkrgqvlkagedkVTITWGLnqslaagtdSAYKTMKLQLCfapvsqkdrawrktedhlnkdktcsfkivekpynkslqtLDWIIesdvptatYFVRAYALNAErhevaygqstndqkttnlfDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKARMSQQK
Flexible Loop (DISEMBL)
MAARGLLLASIYLSLLVHECYGVTLFSSLQKtlqvttttkrgqvlkagedkvtitWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRktedhlnkdktcsfkivekpynkslqtldWIIESDVPTATYFVRAYALNAERHEVAygqstndqkttNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKARMSQQK
Low Complexity Region (SEG)
MAARGlllasiylsllVHECYGVTLFsslqktlqvttttkRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKARMSQQK
Disordered region (IsUnstruct)
****GLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFH***********
Disordered Region (DISOPRED)
****GLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHE***A******
Disordered Region (DISEMBL)
MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEK*********
Disordered Region (DISPRO)
*AARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKAR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKARMSQQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9FGS5	210	High-affinity nitrate tra	yes	no	0.995	0.966	0.554	1e-60
Q9SB67	209	High-affinity nitrate tra	no	no	1.0	0.976	0.511	6e-56

>sp|Q9FGS5|NRT31_ARATH High-affinity nitrate transporter 3.1 OS=Arabidopsis thaliana GN=NRT3.1 PE=1 SV=1

 Score =  232 bits (591), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/211 (55%), Positives = 151/211 (71%), Gaps = 8/211 (3%)

Query: 1   MAARGLLLASIYLSLLVHECYG---VTLFSSLQK-TLQVTTTTKR---GQVLKAGEDKVT 53
           MA + +L AS+ +  L+   +G   V LF  L K  L VTT   R   G VL AG+D + 
Sbjct: 1   MAIQKILFASLLICSLIQSIHGAEKVRLFKELDKGALDVTTKPSREGPGVVLDAGKDTLN 60

Query: 54  ITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK 113
           ITW L+ S+ +  ++ +K +K++LC+AP SQ DR WRKT D L KDKTC  KI+ KPY+K
Sbjct: 61  ITWTLS-SIGSKREAEFKIIKVKLCYAPPSQVDRPWRKTHDELFKDKTCPHKIIAKPYDK 119

Query: 114 SLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLD 173
           +LQ+  W +E D+PT TYFVRAYA++A  HEVAYGQST+D K TNLF +QAI+GRHASLD
Sbjct: 120 TLQSTTWTLERDIPTGTYFVRAYAVDAIGHEVAYGQSTDDAKKTNLFSVQAISGRHASLD 179

Query: 174 IASVCFSVFSIVALFGFFFHEKRKARMSQQK 204
           IAS+CFSVFS+VAL  FF +EKRKA++ Q K
Sbjct: 180 IASICFSVFSVVALVVFFVNEKRKAKIEQSK 210

Acts as a dual component transporter with NTR2.1. Required for high-affinity nitrate transport. Acts as a repressor of lateral root initiation. May be involved in targeting NRT2 proteins to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SB67|NRT32_ARATH High-affinity nitrate transporter 3.2 OS=Arabidopsis thaliana GN=NRT3.2 PE=2 SV=1

 Score =  216 bits (551), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 147/209 (70%), Gaps = 5/209 (2%)

Query: 1   MAARGLLLASIYLSLLVHECYGVT---LFSSLQKTLQVTT-TTKRGQVLKAGEDKVTITW 56
           MA   LL  S+ +  L+    G     LF+ LQ +++VT    K   VL+AG+D VTITW
Sbjct: 1   MAIHTLLFVSLLIFSLIESSSGGKKDRLFTDLQNSIEVTAKPVKDSGVLEAGKDMVTITW 60

Query: 57  GLNQSLA-AGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSL 115
            L  S A   TD+A+KT++++LC+AP+SQ DR WRKT++ L KD++C  +IV K Y+K+ 
Sbjct: 61  KLKSSSAKVDTDTAFKTIQVKLCYAPISQVDRPWRKTDNKLFKDRSCPHEIVSKAYDKTP 120

Query: 116 QTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIA 175
           Q+LDW I  D+PT TYFVRAY ++ + HEVAYGQST++ +TTNLF + AI+G H  LDIA
Sbjct: 121 QSLDWTIGLDIPTGTYFVRAYGIDGDGHEVAYGQSTDEGRTTNLFSVHAISGHHVGLDIA 180

Query: 176 SVCFSVFSIVALFGFFFHEKRKARMSQQK 204
           S  FSVFS+V+LF FF  EKRKA++ Q++
Sbjct: 181 STFFSVFSVVSLFVFFVMEKRKAKLEQRE 209

Acts as a dual component transporter with NTR2.1. Required for high-affinity nitrate transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
255540481	207	conserved hypothetical protein [Ricinus	0.990	0.975	0.647	2e-73
224119494	205	predicted protein [Populus trichocarpa]	0.990	0.985	0.624	9e-73
356563139	208	PREDICTED: high-affinity nitrate transpo	1.0	0.980	0.605	1e-70
225456868	201	PREDICTED: high-affinity nitrate transpo	0.985	1.0	0.658	8e-70
147825149	201	hypothetical protein VITISV_021663 [Viti	0.985	1.0	0.653	1e-69
224133704	206	predicted protein [Populus trichocarpa]	0.921	0.912	0.623	6e-69
224147073	205	predicted protein [Populus trichocarpa]	0.901	0.897	0.625	1e-67
388513457	206	unknown [Medicago truncatula]	0.995	0.985	0.587	6e-67
283132357	202	component of high affinity nitrate trans	0.965	0.975	0.6	3e-66
449469574	211	PREDICTED: high-affinity nitrate transpo	0.960	0.928	0.592	8e-66

>gi|255540481|ref|XP_002511305.1| conserved hypothetical protein [Ricinus communis] gi|223550420|gb|EEF51907.1| conserved hypothetical protein [Ricinus communis]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/204 (64%), Positives = 161/204 (78%), Gaps = 2/204 (0%)

Query: 3   ARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSL 62
           A G LLAS+ +S L    YG   FSSL+ TL VT T    QVLK G D +T+TWG+NQSL
Sbjct: 4   ASGFLLASVLISCLFGSSYGFIFFSSLKNTLVVTATPSSKQVLKGGVDNITVTWGVNQSL 63

Query: 63  AAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKS--LQTLDW 120
            +GTDSA+KT+ ++LC+APVSQ DRAWRKTED L KDKTC FKIV +PY+ +   ++L W
Sbjct: 64  PSGTDSAFKTIDVKLCYAPVSQTDRAWRKTEDELEKDKTCQFKIVSRPYSSANKKESLTW 123

Query: 121 IIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFS 180
            IE DVP+ATYFVRAYA ++  HEVAYGQST+  KTTNLF++QAITGRH SLDIASVCFS
Sbjct: 124 TIERDVPSATYFVRAYAHDSHGHEVAYGQSTDTHKTTNLFEVQAITGRHVSLDIASVCFS 183

Query: 181 VFSIVALFGFFFHEKRKARMSQQK 204
           VFS+V+LFGFF++EKRKA+ +Q K
Sbjct: 184 VFSVVSLFGFFYNEKRKAKKTQAK 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119494|ref|XP_002318088.1| predicted protein [Populus trichocarpa] gi|222858761|gb|EEE96308.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/205 (62%), Positives = 163/205 (79%), Gaps = 3/205 (1%)

Query: 1   MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQ 60
           MAAR LLLAS+ LS  +  CY   LFSSLQKTL VT +   GQVLK G DK+T+TWGLNQ
Sbjct: 1   MAARRLLLASLVLSCSLLPCYQAVLFSSLQKTLAVTASPTSGQVLKGGVDKITVTWGLNQ 60

Query: 61  SLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPY---NKSLQT 117
           +LAAGTDS YKT+K++LC+AP+SQ DRAWRKT D + KD+TC  KIV +PY   NK+ Q+
Sbjct: 61  TLAAGTDSTYKTIKVKLCYAPLSQVDRAWRKTVDRIKKDRTCQHKIVARPYNSANKTFQS 120

Query: 118 LDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASV 177
           L+W ++ DVPTATYF+RAYA NA+  EVAYGQ+T+  KTTNLF +++ITGRH ++D+ S+
Sbjct: 121 LEWTVQRDVPTATYFIRAYAYNADESEVAYGQTTDAHKTTNLFQVESITGRHMAMDVCSI 180

Query: 178 CFSVFSIVALFGFFFHEKRKARMSQ 202
           CFSVFS+V+L  FF+ EKRK++ SQ
Sbjct: 181 CFSVFSVVSLLVFFYIEKRKSKRSQ 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563139|ref|XP_003549822.1| PREDICTED: high-affinity nitrate transporter 3.1-like [Glycine max]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 165/208 (79%), Gaps = 4/208 (1%)

Query: 1   MAARG-LLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLN 59
           MAA+G +++AS+ +  L   CYG   FSSL++TL VT + K+ QVL+AG DK+T+TW LN
Sbjct: 1   MAAQGPVVVASLLIFCLAGSCYGKVHFSSLKRTLDVTASPKQEQVLEAGLDKITVTWALN 60

Query: 60  QSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPY---NKSLQ 116
           ++L AGTDSAYKT+KL+LC+AP+SQKDRAWRKTED L +DKTC  KIV KPY   NK++Q
Sbjct: 61  KTLPAGTDSAYKTIKLKLCYAPISQKDRAWRKTEDELKRDKTCQHKIVAKPYDASNKTVQ 120

Query: 117 TLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIAS 176
             +W++E DVP ATYFVRAYA ++   EVAYGQ+T+ +K+TNLF+I A++GRHASLDI S
Sbjct: 121 RFEWLVERDVPKATYFVRAYAFDSNDEEVAYGQTTDAKKSTNLFEINAVSGRHASLDICS 180

Query: 177 VCFSVFSIVALFGFFFHEKRKARMSQQK 204
           +CFS FS+V+LF FF+ EKRK + S  K
Sbjct: 181 ICFSAFSVVSLFVFFYIEKRKGKASSSK 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456868|ref|XP_002279861.1| PREDICTED: high-affinity nitrate transporter 3.2 [Vitis vinifera] gi|297733682|emb|CBI14929.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 163/202 (80%), Gaps = 1/202 (0%)

Query: 1   MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQ 60
           MA R  LL S+ LS L+  C G   FSSLQ+TL VT + K G+VLK+GEDK+T+TWGLNQ
Sbjct: 1   MATRAFLLTSLLLSCLLQICSGA-YFSSLQRTLIVTASPKAGEVLKSGEDKITVTWGLNQ 59

Query: 61  SLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDW 120
           S  AGTDSAYKT+K++LC+AP+SQ DRAWRKT DHL KDKTC  KIV +PY  S  +++W
Sbjct: 60  SYPAGTDSAYKTVKVKLCYAPISQVDRAWRKTVDHLTKDKTCQHKIVSQPYKASNNSVEW 119

Query: 121 IIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFS 180
            IE DVPTATYF+RAYA +AE  EVAYGQ+T+  KTTNLF I+AITGRHASLDIA+VCFS
Sbjct: 120 TIEKDVPTATYFIRAYAYDAEDQEVAYGQTTDAHKTTNLFGIEAITGRHASLDIAAVCFS 179

Query: 181 VFSIVALFGFFFHEKRKARMSQ 202
            FS+V+L GFF+ EKRK+R+++
Sbjct: 180 AFSVVSLCGFFWVEKRKSRVAK 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825149|emb|CAN71077.1| hypothetical protein VITISV_021663 [Vitis vinifera]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/202 (65%), Positives = 163/202 (80%), Gaps = 1/202 (0%)

Query: 1   MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQ 60
           MA R  LL S+ LS L+  C G   FSSLQ+TL VT + K G+VLK+GEDK+T+TWGLNQ
Sbjct: 1   MATRAFLLTSLLLSCLLQICSGA-YFSSLQRTLIVTASPKAGEVLKSGEDKITVTWGLNQ 59

Query: 61  SLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDW 120
           S  AGTDSAYKT+K++LC+AP+SQ DRAWRKT DHL KDKTC  KIV +PY  S  +++W
Sbjct: 60  SYPAGTDSAYKTVKVKLCYAPISQVDRAWRKTVDHLTKDKTCQHKIVSQPYKASNNSVEW 119

Query: 121 IIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFS 180
            IE DVPTATYF+RAYA +AE  EVAYGQ+T+  KTTNLF I+AITGRHASLDIA+VCFS
Sbjct: 120 TIEKDVPTATYFIRAYAYDAEDQEVAYGQTTDAHKTTNLFGIEAITGRHASLDIAAVCFS 179

Query: 181 VFSIVALFGFFFHEKRKARMSQ 202
            FS+++L GFF+ EKRK+R+++
Sbjct: 180 AFSVISLCGFFWVEKRKSRVAK 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133704|ref|XP_002321640.1| predicted protein [Populus trichocarpa] gi|222868636|gb|EEF05767.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 119/191 (62%), Positives = 154/191 (80%), Gaps = 3/191 (1%)

Query: 15  LLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMK 74
            L+  CYG  LFSSLQ+TL+VT +   GQVLK G DK+T+TWGLNQ++AAGTDS YKT+K
Sbjct: 16  FLLPACYGTVLFSSLQRTLEVTASPTSGQVLKGGVDKITVTWGLNQTVAAGTDSTYKTIK 75

Query: 75  LQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK---SLQTLDWIIESDVPTATY 131
           ++LC+AP+SQ DR WRKT D+L KD+TC  KIV +PYN    + Q+ +W +E DVPTATY
Sbjct: 76  VKLCYAPISQVDRGWRKTVDNLKKDRTCQHKIVARPYNPANSTAQSHEWTVERDVPTATY 135

Query: 132 FVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFF 191
           FVRAYA +A+   VAYGQ+T+ +KTTNLF +QAI+GRH ++D  S+CFSVFS+V+LFGFF
Sbjct: 136 FVRAYAYDADEKVVAYGQTTDARKTTNLFQVQAISGRHVTMDTCSICFSVFSVVSLFGFF 195

Query: 192 FHEKRKARMSQ 202
           ++EKRKA+ SQ
Sbjct: 196 YNEKRKAKRSQ 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224147073|ref|XP_002336401.1| predicted protein [Populus trichocarpa] gi|222834907|gb|EEE73356.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 117/187 (62%), Positives = 150/187 (80%), Gaps = 3/187 (1%)

Query: 19  ECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLC 78
            CYG+ LFSSL +TL VT +   GQVLK G DK+T+TWGLNQ++AAGTDS YKT+K++LC
Sbjct: 19  PCYGIVLFSSLHRTLVVTASPTSGQVLKGGVDKITVTWGLNQTVAAGTDSTYKTIKVKLC 78

Query: 79  FAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK---SLQTLDWIIESDVPTATYFVRA 135
           +AP+SQ DR WRKT D+L KD+TC  KIV +PYN    + Q+ +W +E DVPTATYFVRA
Sbjct: 79  YAPISQVDRGWRKTVDNLKKDRTCQHKIVARPYNPANSTAQSHEWTVERDVPTATYFVRA 138

Query: 136 YALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEK 195
           YA +A+   VAYGQ+T+  KTTNLF +QAI+GRH ++D  S+CFSVFS+V+LFGFF++EK
Sbjct: 139 YAYDADEKVVAYGQTTDAHKTTNLFQVQAISGRHVTMDTCSICFSVFSVVSLFGFFYNEK 198

Query: 196 RKARMSQ 202
           RKA+ SQ
Sbjct: 199 RKAKRSQ 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513457|gb|AFK44790.1| unknown [Medicago truncatula]

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 121/206 (58%), Positives = 160/206 (77%), Gaps = 3/206 (1%)

Query: 1   MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQ 60
           MAA  L++AS+ L  L   CYG  LFSSL++T+ VT + K+GQVL +G DK++ TW LN+
Sbjct: 1   MAAHKLVVASLLLCCLAEICYGKDLFSSLKRTIDVTASPKQGQVLLSGVDKISGTWALNK 60

Query: 61  SLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPY---NKSLQT 117
           +  AGTDS+YKT+KL+LC+AP+SQKDRAWRKTED L++DKTC  K++  PY   NK++QT
Sbjct: 61  TFPAGTDSSYKTIKLKLCYAPISQKDRAWRKTEDELSRDKTCQHKMLAMPYNASNKTVQT 120

Query: 118 LDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASV 177
            +W+I+ DVP ATYFVRAYA ++   EVAYGQ+TN  K+TNLF+I AI+GRHA+LDI SV
Sbjct: 121 FEWLIQRDVPQATYFVRAYAFDSNDKEVAYGQTTNAGKSTNLFEINAISGRHATLDICSV 180

Query: 178 CFSVFSIVALFGFFFHEKRKARMSQQ 203
            FS FS+V+L  FF+ EKRK +  +Q
Sbjct: 181 VFSAFSVVSLGVFFYIEKRKGKSPKQ 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283132357|dbj|BAI63584.1| component of high affinity nitrate transporter [Lotus japonicus]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 156/200 (78%), Gaps = 3/200 (1%)

Query: 1   MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQ 60
           MAA  +++ +  L  L   CYG  LFSSL+KTL VT + K GQV++AG D +T+TW LN+
Sbjct: 1   MAAHRVIIIASLLFCLAGTCYGKVLFSSLKKTLDVTASPKHGQVVEAGLDTITVTWALNK 60

Query: 61  SLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPY---NKSLQT 117
           +L AGTDS+YKT+K++LC+AP+SQ+DRAWRKTED L++DKTC  KIV KPY   NK++ T
Sbjct: 61  TLPAGTDSSYKTIKVKLCYAPISQQDRAWRKTEDELSRDKTCQHKIVAKPYDASNKTVHT 120

Query: 118 LDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASV 177
            +W+IE DVP ATYFVRAYAL++   +V YGQ+++ +KT+NLF IQAITGRH SLDI S 
Sbjct: 121 FEWLIERDVPEATYFVRAYALDSNDVQVGYGQTSDAKKTSNLFKIQAITGRHLSLDICSA 180

Query: 178 CFSVFSIVALFGFFFHEKRK 197
           CFS FS+V+L  FF+ EKRK
Sbjct: 181 CFSAFSVVSLIFFFYIEKRK 200

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469574|ref|XP_004152494.1| PREDICTED: high-affinity nitrate transporter 3.1-like [Cucumis sativus] gi|449487738|ref|XP_004157776.1| PREDICTED: high-affinity nitrate transporter 3.1-like [Cucumis sativus] gi|283788583|gb|ACV33078.2| high-affinity nitrate transport system component [Cucumis sativus]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 155/199 (77%), Gaps = 3/199 (1%)

Query: 1   MAARGLLLASIYLSLLVHECYGVTLFSSLQKTLQVTTTTKRGQVLKAGEDKVTITWGLNQ 60
           MA+   LLA+++LS  +   +G   FSSL +TL+VT + K GQVLKAG DK+++TW LN+
Sbjct: 1   MASNAFLLAALFLSCFLGFSHGNIHFSSLPRTLEVTASPKPGQVLKAGVDKISVTWVLNE 60

Query: 61  SLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEK---PYNKSLQT 117
           ++ AG+DS+YK +K +LC+APVSQ DRAWRKTED L KDKTC F IVEK   P NK++Q+
Sbjct: 61  TVKAGSDSSYKNIKAKLCYAPVSQVDRAWRKTEDDLKKDKTCQFSIVEKQYNPANKTVQS 120

Query: 118 LDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIASV 177
            +W ++ D+PT T+FVRAY LN+   EVAYGQ+T+ +K TNLF I++ITGRH SLDIAS 
Sbjct: 121 FEWTVKRDIPTGTFFVRAYVLNSAGEEVAYGQTTDAKKGTNLFQIESITGRHISLDIASA 180

Query: 178 CFSVFSIVALFGFFFHEKR 196
           CFS FS+V+LFGFFF +KR
Sbjct: 181 CFSAFSVVSLFGFFFIDKR 199

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2157737	210	WR3 "WOUND-RESPONSIVE 3" [Arab	0.794	0.771	0.613	3.1e-51
TAIR|locus:2121969	209	AT4G24730 "AT4G24730" [Arabido	0.789	0.770	0.574	7.7e-48

TAIR|locus:2157737 WR3 "WOUND-RESPONSIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 100/163 (61%), Positives = 128/163 (78%)

Query:    42 GQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKT 101
             G VL AG+D + ITW L+ S+ +  ++ +K +K++LC+AP SQ DR WRKT D L KDKT
Sbjct:    49 GVVLDAGKDTLNITWTLS-SIGSKREAEFKIIKVKLCYAPPSQVDRPWRKTHDELFKDKT 107

Query:   102 CSFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFD 161
             C  KI+ KPY+K+LQ+  W +E D+PT TYFVRAYA++A  HEVAYGQST+D K TNLF 
Sbjct:   108 CPHKIIAKPYDKTLQSTTWTLERDIPTGTYFVRAYAVDAIGHEVAYGQSTDDAKKTNLFS 167

Query:   162 IQAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKARMSQQK 204
             +QAI+GRHASLDIAS+CFSVFS+VAL  FF +EKRKA++ Q K
Sbjct:   168 VQAISGRHASLDIASICFSVFSVVALVVFFVNEKRKAKIEQSK 210

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0010167 "response to nitrate" evidence=IEP;RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2121969 AT4G24730 "AT4G24730" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/162 (57%), Positives = 126/162 (77%)

Query:    44 VLKAGEDKVTITWGLNQSLA-AGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTC 102
             VL+AG+D VTITW L  S A   TD+A+KT++++LC+AP+SQ DR WRKT++ L KD++C
Sbjct:    48 VLEAGKDMVTITWKLKSSSAKVDTDTAFKTIQVKLCYAPISQVDRPWRKTDNKLFKDRSC 107

Query:   103 SFKIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDI 162
               +IV K Y+K+ Q+LDW I  D+PT TYFVRAY ++ + HEVAYGQST++ +TTNLF +
Sbjct:   108 PHEIVSKAYDKTPQSLDWTIGLDIPTGTYFVRAYGIDGDGHEVAYGQSTDEGRTTNLFSV 167

Query:   163 QAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKARMSQQK 204
              AI+G H  LDIAS  FSVFS+V+LF FF  EKRKA++ Q++
Sbjct:   168 HAISGHHVGLDIASTFFSVFSVVSLFVFFVMEKRKAKLEQRE 209


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      204       179   0.00089  109 3  11 22  0.38    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.20u 0.12s 15.32t   Elapsed:  00:00:01
  Total cpu time:  15.20u 0.12s 15.32t   Elapsed:  00:00:01
  Start:  Mon May 20 18:37:58 2013   End:  Mon May 20 18:37:59 2013

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FGS5	NRT31_ARATH	No assigned EC number	0.5545	0.9950	0.9666	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120819 hypothetical protein (205 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
PF10342	93	GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-i	98.33
PRK10301	124	hypothetical protein; Provisional	96.76
PF04234	97	CopC: CopC domain; InterPro: IPR007348 CopC is a b	96.09
PF15418	132	DUF4625: Domain of unknown function (DUF4625)	95.34
PF09608	236	Alph_Pro_TM: Putative transmembrane protein (Alph_	91.53
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	90.94
TIGR02186	261	alph_Pro_TM conserved hypothetical protein. This f	87.71
PF04734	674	Ceramidase_alk: Neutral/alkaline non-lysosomal cer	87.03
COG2372	127	CopC Uncharacterized protein, homolog of Cu resist	85.69
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	80.46

>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly

Probab=98.33  E-value=9e-06  Score=58.59  Aligned_cols=88  Identities=25%  Similarity=0.452  Sum_probs=64.0

Q ss_pred             EecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeeccccccCCC
Q 028785           37 TTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQ  116 (204)
Q Consensus        37 as~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~~~g  116 (204)
                      .+|..|.++++| +.++|+|.-..+.|       ..++|.||-.+.+.               ..+...| ....+.+.|
T Consensus         1 TsP~~~~~~~~g-~~~~I~W~~~~~~~-------~~~~I~L~~g~~~~---------------~~~~~~i-a~~v~~~~g   56 (93)
T PF10342_consen    1 TSPTAGTVWTAG-QPITITWTSDGTDP-------GNVTIYLCNGNNTN---------------LNFVQTI-ASNVSNSDG   56 (93)
T ss_pred             CcCCCCCEEECC-CcEEEEEeCCCCCC-------cEEEEEEEcCCCCC---------------cceeEEE-EecccCCCC
Confidence            378999999999 77999999986554       58999999766521               2332333 334455569


Q ss_pred             eEEEEecCCCCC-ceeEEEEEEEeCCCceEeecccC
Q 028785          117 TLDWIIESDVPT-ATYFVRAYALNAERHEVAYGQST  151 (204)
Q Consensus       117 s~~~tl~~dvp~-atYfvraya~da~g~~vaYGqs~  151 (204)
                      +++|+++.|+|. ..||||... .+++  -.|.+|.
T Consensus        57 s~~~~~p~~l~~~~~Y~i~~~~-~~~~--~~~~~S~   89 (93)
T PF10342_consen   57 SYTWTIPSDLPSGGDYFIQIVN-SSNN--TIYAYSP   89 (93)
T ss_pred             EEEEEcCCCCCCCCcEEEEEEE-CCCC--ceEEECc
Confidence            999999999996 789999993 3444  4566665

In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].

>PRK10301 hypothetical protein; Provisional

Probab=96.76  E-value=0.024  Score=45.17  Aligned_cols=86  Identities=10%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             EEEEecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeecccccc
Q 028785           34 QVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK  113 (204)
Q Consensus        34 ~Vtas~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~  113 (204)
                      .+..+|.+|++|..-.+.|++++.-    |  .+..+..|+|.   .+.   .+.|.-......              ..
T Consensus        30 l~~s~Pa~ga~v~~~P~~V~L~F~e----~--v~~~~s~i~v~---~~~---g~~v~~~~~~~~--------------~~   83 (124)
T PRK10301         30 LTHQYPAANAQVTAAPQALTLNFSE----G--IEPGFSGATIT---GPK---QENIKTLPAKRN--------------EQ   83 (124)
T ss_pred             ccccCCCCCCccccCCCEEEEEcCC----C--ccccccEEEEE---cCC---CCEeccCCcccc--------------CC
Confidence            4678899999999999999999532    2  34445667663   111   111111100000              11


Q ss_pred             CCCeEEEEecCCCCCceeEEEEEEEeCCCceE
Q 028785          114 SLQTLDWIIESDVPTATYFVRAYALNAERHEV  145 (204)
Q Consensus       114 ~~gs~~~tl~~dvp~atYfvraya~da~g~~v  145 (204)
                      .+..+...++.+.++|+|.|+==.+-+|||.+
T Consensus        84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~~  115 (124)
T PRK10301         84 DQKQLIVPLADSLKPGTYTVDWHVVSVDGHKT  115 (124)
T ss_pred             CCcEEEEECCCCCCCccEEEEEEEEecCCCcc
Confidence            12346666667799999999999999999955

>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule

Probab=96.09  E-value=0.072  Score=40.05  Aligned_cols=85  Identities=20%  Similarity=0.304  Sum_probs=50.9

Q ss_pred             EEEEecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeecccccc
Q 028785           34 QVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK  113 (204)
Q Consensus        34 ~Vtas~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~  113 (204)
                      .+..+|.+|++|....+.|+++++-+      .+..+.+|+|.   .+..   +.|...         +      ...+.
T Consensus         4 L~~s~Pa~ga~l~~~P~~v~L~F~e~------v~~~~s~v~v~---~~~g---~~v~~~---------~------~~~~~   56 (97)
T PF04234_consen    4 LVSSSPADGATLAAAPEEVTLTFSEP------VEPGFSSVTVT---DPDG---KRVDLG---------E------PTVDG   56 (97)
T ss_dssp             EEEEES-TTBEE-S--SSEEEEESS---------CCC-EEEEE---EEEE---TTSCTC---------E------EEEEE
T ss_pred             ccccCCCCCCEeecCCCEEEEEeCCC------CccCccEEEEE---cCCC---ceeecC---------c------ceecC
Confidence            46789999999999999999996544      23344577665   1111   111111         1      12222


Q ss_pred             CCCeEEEEecCCCCCceeEEEEEEEeCCCceE
Q 028785          114 SLQTLDWIIESDVPTATYFVRAYALNAERHEV  145 (204)
Q Consensus       114 ~~gs~~~tl~~dvp~atYfvraya~da~g~~v  145 (204)
                      ....+...++...|+|+|.|+=-++-+|||.+
T Consensus        57 ~~~~~~~~l~~~l~~G~YtV~wrvvs~DGH~~   88 (97)
T PF04234_consen   57 DGKTLTVPLPPPLPPGTYTVSWRVVSADGHPV   88 (97)
T ss_dssp             STTEEEEEESS---SEEEEEEEEEEETTSCEE
T ss_pred             CceEEEEECCCCCCCceEEEEEEEEecCCCCc
Confidence            34689999999999999999999999999965

Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.

>PF15418 DUF4625: Domain of unknown function (DUF4625)

Probab=95.34  E-value=0.17  Score=41.04  Aligned_cols=93  Identities=16%  Similarity=0.287  Sum_probs=63.3

Q ss_pred             eeEEEEecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEE-----eecccccc---CccccccccCcCcCCCcc
Q 028785           32 TLQVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQL-----CFAPVSQK---DRAWRKTEDHLNKDKTCS  103 (204)
Q Consensus        32 tL~Vtas~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkL-----CYap~SQv---dR~WRK~~d~l~kdK~Cq  103 (204)
                      .+.++..|..++++..|.| |++.-.+..      +.+-+.++|.+     +.+-..+.   ..+|.             
T Consensus        19 ~~~~~~~p~~~~~~~~G~~-ihfe~~i~d------~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~-------------   78 (132)
T PF15418_consen   19 LNEIGAFPENCKVATRGDD-IHFEADISD------NSAIKSIKVEIHNNFDHHTHSTEAGECEKPWV-------------   78 (132)
T ss_pred             eeecccCCCCCeEEecCCc-EEEEEEEEc------ccceeEEEEEEecCcCcccccccccccccCcE-------------
Confidence            4456678899999999999 777755542      33346888888     44433333   23332             


Q ss_pred             eeeeccccccC------CCeEEEEecCCCCCceeEEEEEEEeCCCceEee
Q 028785          104 FKIVEKPYNKS------LQTLDWIIESDVPTATYFVRAYALNAERHEVAY  147 (204)
Q Consensus       104 ~ki~~k~y~~~------~gs~~~tl~~dvp~atYfvraya~da~g~~vaY  147 (204)
                         ..+.|+..      .-...++||.|+|+|.|.+-....|+.|.+..+
T Consensus        79 ---~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~YH~~i~VtD~~Gn~~~~  125 (132)
T PF15418_consen   79 ---FEQDYDIYGGKKNYDFHEHIDIPADAPAGDYHFMITVTDAAGNQTEE  125 (132)
T ss_pred             ---EEEEEcccCCcccEeEEEeeeCCCCCCCcceEEEEEEEECCCCEEEE
Confidence               12222211      236778999999999999999999999987654

>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids

Probab=91.53  E-value=0.18  Score=44.55  Aligned_cols=40  Identities=20%  Similarity=0.410  Sum_probs=34.3

Q ss_pred             eEEEEecCCCCCceeEEEEEEEeCCCceEeecccCCCCcccceEEEEee
Q 028785          117 TLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAI  165 (204)
Q Consensus       117 s~~~tl~~dvp~atYfvraya~da~g~~vaYGqs~~~~~ttn~F~V~~i  165 (204)
                      +.+..+|-|+|+|.|.+|+|.+ .+|..++...+.        ++|+.+
T Consensus       158 ra~i~LPanvp~G~Y~v~v~l~-rdG~vv~~~~~~--------l~V~Kv  197 (236)
T PF09608_consen  158 RARIPLPANVPPGDYTVRVYLF-RDGQVVASQETP--------LRVRKV  197 (236)
T ss_pred             EEEeEcCCCCCcceEEEEEEEE-ECCEEEEEEeeE--------EEEEEc
Confidence            5788999999999999999997 899888776666        888873

They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=90.94  E-value=2.4  Score=28.51  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=43.5

Q ss_pred             eeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeeccccccCCCeEEEEecCC
Q 028785           46 KAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESD  125 (204)
Q Consensus        46 ~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~~~gs~~~tl~~d  125 (204)
                      ..+.++|.|+|.... ..-+ +    -...+|.|.+..... .|+.                 .....  ....+++..=
T Consensus        10 ~~~~~sv~v~W~~~~-~~~~-~----~~~y~v~~~~~~~~~-~~~~-----------------~~~~~--~~~~~~i~~L   63 (85)
T PF00041_consen   10 NISPTSVTVSWKPPS-SGNG-P----ITGYRVEYRSVNSTS-DWQE-----------------VTVPG--NETSYTITGL   63 (85)
T ss_dssp             EECSSEEEEEEEESS-STSS-S----ESEEEEEEEETTSSS-EEEE-----------------EEEET--TSSEEEEESC
T ss_pred             ECCCCEEEEEEECCC-CCCC-C----eeEEEEEEEecccce-eeee-----------------eeeee--eeeeeeeccC
Confidence            348899999999986 2212 2    335566664433322 1111                 11111  2336677766


Q ss_pred             CCCceeEEEEEEEeCCC
Q 028785          126 VPTATYFVRAYALNAER  142 (204)
Q Consensus       126 vp~atYfvraya~da~g  142 (204)
                      .|.-+|.+|++++++.|
T Consensus        64 ~p~t~Y~~~v~a~~~~g   80 (85)
T PF00041_consen   64 QPGTTYEFRVRAVNSDG   80 (85)
T ss_dssp             CTTSEEEEEEEEEETTE
T ss_pred             CCCCEEEEEEEEEeCCc
Confidence            89999999999998877

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>TIGR02186 alph_Pro_TM conserved hypothetical protein

Probab=87.71  E-value=1.1  Score=40.48  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=36.5

Q ss_pred             eEEEEecCCCCCceeEEEEEEEeCCCceEeecccCCCCcccceEEEEeeccccc
Q 028785          117 TLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHA  170 (204)
Q Consensus       117 s~~~tl~~dvp~atYfvraya~da~g~~vaYGqs~~~~~ttn~F~V~~itg~~~  170 (204)
                      +.+..+|-|+|+|+|.+|+|.+ .+|..++-..+.        ++|+.+ |...
T Consensus       183 ra~i~LPAnvp~G~Y~v~v~L~-r~G~vv~~~~t~--------l~V~Kv-G~E~  226 (261)
T TIGR02186       183 RATLRLPANVPNGTHEVRAYLF-RGGVFIARTELA--------LEIVKT-GLEQ  226 (261)
T ss_pred             EEeeecCCCCCCceEEEEEEEE-eCCEEEEEEEeE--------EEEEEe-cHHH
Confidence            5678899999999999999997 999999877776        888883 4433

This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.

>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]

Probab=87.03  E-value=4  Score=41.20  Aligned_cols=101  Identities=18%  Similarity=0.290  Sum_probs=47.1

Q ss_pred             ceEEEEee-ccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeeccccccCCCeEEEEecCCCCC
Q 028785           50 DKVTITWG-LNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQTLDWIIESDVPT  128 (204)
Q Consensus        50 D~itvtw~-ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~~~gs~~~tl~~dvp~  128 (204)
                      |.+++++. .|+.-.--.+..|-+|.=+-       -+-.|.---||=+-+-.=.|+-..-....+.=.++|++|.|+|+
T Consensus       571 ~~v~~~F~~a~Prn~l~~~~tfl~Ver~~-------~~~~W~~v~~D~dw~t~f~W~r~~~~~~~S~~ti~W~ip~~~~~  643 (674)
T PF04734_consen  571 DTVSATFVGANPRNNLRLEGTFLTVERLE-------SGGSWQTVADDADWSTRFRWKRTGSLLGTSEVTIEWEIPPDTPP  643 (674)
T ss_dssp             -EEEEEEEE--GGG---TTS-SEEEEEEE-------S-S--EEEEETTSTTEEEEEEEETTT--EEEEEEEEE--TT--S
T ss_pred             CeEEEEEeeeCCCCccCCCCCeEEEEEec-------CCCCeEEEEeCCCccEEEEEEecCCccccEEEEEEEECCCCCCC
Confidence            66777754 33322222445555554332       35678776666333322334332222112234899999999999


Q ss_pred             ceeEEEEEEE--eCCCceEeecccCCCCcccceEEEE
Q 028785          129 ATYFVRAYAL--NAERHEVAYGQSTNDQKTTNLFDIQ  163 (204)
Q Consensus       129 atYfvraya~--da~g~~vaYGqs~~~~~ttn~F~V~  163 (204)
                      ++|-||.+.-  ...|....|--++      +.|+|+
T Consensus       644 G~YRi~~~G~~k~~~g~i~~f~G~S------~~F~V~  674 (674)
T PF04734_consen  644 GTYRIRHFGDAKSLFGGITPFEGTS------REFTVT  674 (674)
T ss_dssp             EEEEEEEEEEEE-TTT-EEEEEEE---------EEE-
T ss_pred             CCEEEEEEeeccCCCCCeEeEEEEC------CceEeC
Confidence            9999999984  5567677774444      238774

They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.

>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]

Probab=85.69  E-value=15  Score=30.39  Aligned_cols=90  Identities=17%  Similarity=0.281  Sum_probs=56.3

Q ss_pred             EEEEecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeecccccc
Q 028785           34 QVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK  113 (204)
Q Consensus        34 ~Vtas~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~  113 (204)
                      .|.-.|.+|.++.+=++.|+..++-.      ....|-.++|.   .|             +...-++-..+.     +.
T Consensus        31 l~~s~Pad~s~v~aaP~~i~L~Fse~------ve~~fs~~~l~---~~-------------d~~~v~t~~~~~-----~~   83 (127)
T COG2372          31 LVSSNPADNSVVTAAPAAITLEFSEG------VEPGFSGAKLT---GP-------------DGEEVATAGTKL-----DE   83 (127)
T ss_pred             eecCCCCCcchhhcCceeEEEecCCc------cCCCcceeEEE---CC-------------CCCccccCcccc-----cc
Confidence            45566788999999999999774432      34455666664   11             111111111101     11


Q ss_pred             CC-CeEEEEecCCCCCceeEEEEEEEeCCCceEeecccC
Q 028785          114 SL-QTLDWIIESDVPTATYFVRAYALNAERHEVAYGQST  151 (204)
Q Consensus       114 ~~-gs~~~tl~~dvp~atYfvraya~da~g~~vaYGqs~  151 (204)
                      .+ ...+..++.+.+.++|.+.=-.+.+||| +-=|+.+
T Consensus        84 ~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH-~v~G~~s  121 (127)
T COG2372          84 QNHTQLEVPLPQPLKAGVYTVDWRVVSSDGH-VVKGSIS  121 (127)
T ss_pred             cCCcEEEecCcccCCCCcEEEEEEEEecCCc-EeccEEE
Confidence            11 2478888899999999998888889999 5556665

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=80.46  E-value=4.1  Score=27.69  Aligned_cols=33  Identities=21%  Similarity=0.165  Sum_probs=29.1

Q ss_pred             ccccCCCeEEEEecCCCCCceeEEEEEEEeCCC
Q 028785          110 PYNKSLQTLDWIIESDVPTATYFVRAYALNAER  142 (204)
Q Consensus       110 ~y~~~~gs~~~tl~~dvp~atYfvraya~da~g  142 (204)
                      -++...|.+.|++..++.++.|-+.+-+-|++|
T Consensus        17 s~d~~tG~isGtp~~~~~~G~y~~~vtatd~~G   49 (49)
T PF05345_consen   17 SLDPSTGTISGTPTSSVQPGTYTFTVTATDGSG   49 (49)
T ss_pred             EEeCCCCEEEeecCCCccccEEEEEEEEEcCCC
Confidence            357778999999999999999999999988876

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
3eja_A	208	Protein GH61E; beta sandwich, fibronectin type III	93.94
2c9r_A	102	COPC, copper resistance protein C; copper transpor	93.65
1lyq_A	104	PCOC copper resistance protein; beta barrel, IG do	93.56
2vtc_A	249	CEL61B, cellulase; hydrolase, glycoside; HET: NAG;	90.95
3pe9_A	98	Fibronectin(III)-like module; CBHA, beta-sandwich,	87.79
2zws_A	646	Neutral ceramidase; prism fold and beta-sandwich f	87.45
4eis_A	225	Polysaccharide monooxygenase-3; GH61, PMO, cellula	86.23
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	80.87

>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A*

Probab=93.94  E-value=0.36  Score=40.78  Aligned_cols=80  Identities=18%  Similarity=0.208  Sum_probs=45.6

Q ss_pred             eeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeecccccc---------C
Q 028785           44 VLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK---------S  114 (204)
Q Consensus        44 vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~---------~  114 (204)
                      .+.|| |+|++.|....+-+ |      -|.+=|=-.|..+--..|.++.+.       =|||.+..+..         .
T Consensus        51 ~V~AG-~~v~~~~~~~~~H~-G------Pv~~Ylak~~~~~~~~~~dgsg~~-------WFKI~e~g~~~~~~~~W~~~~  115 (208)
T 3eja_A           51 NTTAG-STVTYWANPDVYHP-G------PVQFYMARVPDGEDINSWNGDGAV-------WFKVYEDHPTFGAQLTWPSTG  115 (208)
T ss_dssp             EEETT-CEEEEEEESCCCSS-S------CEEEEEEECCTTSCTTTCCCCSSC-------BEEEEECCCBCSSSCBCTTTT
T ss_pred             EECCC-CEEEEEEecCCCCC-C------ceEEEEeeCCCCccccccCCCCCc-------EEEEeeeccCCCCcceeeccC
Confidence            35566 88999997542222 2      455555444442222222222221       14444433321         1


Q ss_pred             CCeEEEEecCCCCCceeEEEEEEE
Q 028785          115 LQTLDWIIESDVPTATYFVRAYAL  138 (204)
Q Consensus       115 ~gs~~~tl~~dvp~atYfvraya~  138 (204)
                      .++++++||.++|++.|.+|.=.+
T Consensus       116 ~~~~~~~iP~~l~~G~YllR~E~i  139 (208)
T 3eja_A          116 KSSFAVPIPPCIKSGYYLLRAEQI  139 (208)
T ss_dssp             CCEEEEECCSSBCSEEEEEEEEEE
T ss_pred             CCceEEeccCCCCCcceEEEeeee
Confidence            378999999999999999997544

>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A

Probab=93.65  E-value=0.46  Score=35.42  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=54.9

Q ss_pred             EEEEecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeecccc-c
Q 028785           34 QVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPY-N  112 (204)
Q Consensus        34 ~Vtas~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y-~  112 (204)
                      .+..+|.+|++| +..+.|+++++-.      .+..|..|+|.   .+.   .+.|..-.         . ++..++- +
T Consensus         4 L~~s~Pa~ga~v-~aP~~v~L~Fse~------v~~~~s~v~v~---~~~---g~~v~~~~---------~-~~~~~~~~~   60 (102)
T 2c9r_A            4 LVSSTPAEGSEG-AAPAKIELHFSEN------LVTQFSGAKLV---MTA---MPGMEHSP---------M-AVKAAVSGG   60 (102)
T ss_dssp             EEEEESCTTCEE-SCCSCEEEEESSC------CCGGGCEEEEE---EEE---CC-----C---------E-EECEEEEEC
T ss_pred             ccccCCCCcCEE-CCCCEEEEEeCCC------CccCccEEEEE---CCC---CCeeeecc---------c-cccccceec
Confidence            467889999999 9999999996543      34455677773   221   23332210         0 1112222 2


Q ss_pred             cC-CCeEEEEecCCCCCceeEEEEEEEeCCCceEe
Q 028785          113 KS-LQTLDWIIESDVPTATYFVRAYALNAERHEVA  146 (204)
Q Consensus       113 ~~-~gs~~~tl~~dvp~atYfvraya~da~g~~va  146 (204)
                      .. ...+...++ ..|+|+|.|+=-++.+|||.+.
T Consensus        61 ~~~~~~~~~~l~-~L~~G~YtV~WrvvS~DGH~~~   94 (102)
T 2c9r_A           61 GDPKTMVITPAS-PLTAGTYKVDWRAVSSDTFPIT   94 (102)
T ss_dssp             SSTTEEEEEESS-CCCSEEEEEEEEECCTTCCCEE
T ss_pred             CCCCcEEEEECC-CCCCceEEEEEEEEecCCCccC
Confidence            12 234566664 8999999999999999999653

>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A

Probab=93.56  E-value=0.43  Score=35.79  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             EEEEecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeecccc-c
Q 028785           34 QVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPY-N  112 (204)
Q Consensus        34 ~Vtas~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y-~  112 (204)
                      .+..+|.+|++| +..+.|+++++-.      .+..+.+|+|.   .+.   .+.|..   ++..      ++..++- +
T Consensus         5 L~~s~Pa~ga~v-~aP~~V~L~Fse~------v~~~~s~v~v~---~~~---g~~v~~---~~~~------~~~~~~~~~   62 (104)
T 1lyq_A            5 LKSSVPQADSAV-AAPEKIQLNFSEN------LTVKFSGAKLT---MTG---MKGMSS---HSPM------PVAAKVAPG   62 (104)
T ss_dssp             EEEEESCTTCEE-SCCCCEEEEESSC------CCGGGCEEEEE---EEE---EC---C---CCCE------ECCEEEEEC
T ss_pred             ccccCCCCcCEE-CCCCEEEEEeCCC------CcccccEEEEE---CCC---CCeeee---cccc------ccccceeec
Confidence            467889999999 9999999996433      34445677773   221   222321   0000      0001221 1


Q ss_pred             cC-CCeEEEEecCCCCCceeEEEEEEEeCCCceEe
Q 028785          113 KS-LQTLDWIIESDVPTATYFVRAYALNAERHEVA  146 (204)
Q Consensus       113 ~~-~gs~~~tl~~dvp~atYfvraya~da~g~~va  146 (204)
                      .. ...+...++ ..|+|+|.|+=-++.+|||.+.
T Consensus        63 ~~~~~~~~~~l~-~L~~G~YtV~WrvvS~DGH~~~   96 (104)
T 1lyq_A           63 ADPKSMVIIPRE-PLPAGTYRVDWRAVSSDTHPIT   96 (104)
T ss_dssp             SSTTEEEEEESS-CCCSEEEEEEEEECCTTSCCEE
T ss_pred             CCCCcEEEEECC-CCCCceEEEEEEEEecCCCccC
Confidence            11 234566665 8999999999999999999653

>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina}

Probab=90.95  E-value=1.1  Score=38.45  Aligned_cols=85  Identities=14%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             eeeeCCceEEEEeecc--ccCcCCCccccceeEEEEeeccc--cccCc---cccccccCcCcCCCcceeeeccccccCCC
Q 028785           44 VLKAGEDKVTITWGLN--QSLAAGTDSAYKTMKLQLCFAPV--SQKDR---AWRKTEDHLNKDKTCSFKIVEKPYNKSLQ  116 (204)
Q Consensus        44 vl~aG~D~itvtw~ln--~t~~ag~d~~~ktvkvkLCYap~--SQvdR---~WRK~~d~l~kdK~Cq~ki~~k~y~~~~g  116 (204)
                      .+.+| |+|++.|...  ... -      -.+.+-|=..|.  ...|.   .|-|=...=-.+..=+|  ........++
T Consensus        90 ~v~AG-~~v~~~~~~~~~~~~-~------GP~~~Ylak~~~~~~~~d~~g~~WFKI~e~G~~~~~g~W--~~~~li~~~~  159 (249)
T 2vtc_A           90 TAAAG-SNIVFQWGPGVWPHP-Y------GPIVTYVVECSGSCTTVNKNNLRWVKIQEAGINYNTQVW--AQQDLINQGN  159 (249)
T ss_dssp             EEETT-CEEEEEEESSCCCCC-S------SCEEEEEEECSSCGGGCCGGGCEEEEEEEECEETTTTEE--HHHHHHHTTS
T ss_pred             EECCC-CEEEEEEeccccccC-C------CcHHHhhhcCCccccccCCCCCCEEEEEeecCCCCCCcc--cchhhhccCC
Confidence            56777 8899999873  111 2      366677755552  23332   35443322000000001  0111112357


Q ss_pred             eEEEEecCCCCCceeEEEEEEE
Q 028785          117 TLDWIIESDVPTATYFVRAYAL  138 (204)
Q Consensus       117 s~~~tl~~dvp~atYfvraya~  138 (204)
                      +++++||.|+|++.|-+|.=.+
T Consensus       160 ~~~~tIP~~l~~G~YLlR~E~i  181 (249)
T 2vtc_A          160 KWTVKIPSSLRPGNYVFRHELL  181 (249)
T ss_dssp             EEEEECCTTBCSEEEEEEEEEE
T ss_pred             eeEEEcCCCCCCcceEEEEEee
Confidence            8999999999999999998765

>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}

Probab=87.79  E-value=2.2  Score=31.72  Aligned_cols=71  Identities=18%  Similarity=0.232  Sum_probs=44.1

Q ss_pred             EecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeeccccccCCC
Q 028785           37 TTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSLQ  116 (204)
Q Consensus        37 as~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~~~g  116 (204)
                      .+|.+|+++.+| +.|+|+  .+++-+-|.-   ..|.+.+.-   .+           +..|       ...||     
T Consensus         5 tsP~~ga~v~~g-~~v~i~--a~A~D~dg~V---~kVef~vdg---~~-----------vg~d-------t~apy-----   52 (98)
T 3pe9_A            5 TAPKSNVVAYGN-EFLKIT--ATASDSDGKI---SRVDFLVDG---EV-----------IGSD-------REAPY-----   52 (98)
T ss_dssp             EECCTTCCEETT-SEEEEE--EEECCSSSCE---EEEEEEETT---EE-----------EEEE-------CSSSE-----
T ss_pred             eeCCCcCEEcCC-CEEEEE--EEEEeCCCCE---EEEEEEECC---EE-----------eccc-------ccCCE-----
Confidence            489999999999 567776  6655433311   244443321   10           1111       11333     


Q ss_pred             eEEEEecCCCCCceeEEEEEEEeCCCc
Q 028785          117 TLDWIIESDVPTATYFVRAYALNAERH  143 (204)
Q Consensus       117 s~~~tl~~dvp~atYfvraya~da~g~  143 (204)
                      +++|+..    .|.|.++|-+.|.+|.
T Consensus        53 ~~~w~~~----~G~htl~a~AtD~~G~   75 (98)
T 3pe9_A           53 EYEWKAV----EGNHEISVIAYDDDDA   75 (98)
T ss_dssp             EEEEECC----SEEEEEEEEEEETTCC
T ss_pred             EEEEEcC----CccEEEEEEEEECCCC
Confidence            6778865    6999999999999996

>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*

Probab=87.45  E-value=4.5  Score=38.87  Aligned_cols=105  Identities=21%  Similarity=0.315  Sum_probs=63.6

Q ss_pred             eeCCceEEEEeec-cccCcCCCccccceeEEEEeeccccccCcccc--ccccCcCcCCCcceeeeccccccCCCeEEEEe
Q 028785           46 KAGEDKVTITWGL-NQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWR--KTEDHLNKDKTCSFKIVEKPYNKSLQTLDWII  122 (204)
Q Consensus        46 ~aG~D~itvtw~l-n~t~~ag~d~~~ktvkvkLCYap~SQvdR~WR--K~~d~l~kdK~Cq~ki~~k~y~~~~gs~~~tl  122 (204)
                      +.| |+++++|.. |+.-.--.+..|-+|.- |      +.+-.|.  ---||=+-+-.=+|+-...++.  .=.++|++
T Consensus       535 ~~g-~~v~~~f~~~~p~n~~~~~~t~~~ve~-~------~~~~~w~~~~v~~D~d~~t~~~w~r~~~~~s--~~~~~W~i  604 (646)
T 2zws_A          535 RIG-DKVTVAFVTGHPKNDLRTEKTFLEVVN-I------GKDGKQTPVTVATDNDWDTQYRWERVGISAS--KATISWSI  604 (646)
T ss_dssp             ETT-CEEEEEEECCCGGGCCCTTSCSEEEEE-E------ESSSCCCCEEEEETTSTTEEEEEEEETTTEE--EEEEEEEC
T ss_pred             cCC-CEEEEEEEccCCCcccccCCceEEEEE-e------cCCCceEEEEEecCCCccEEEEEEeCCCCce--EEEEEEEC
Confidence            345 788888654 33222236677777763 2      3344587  5544333232234433322222  23789999


Q ss_pred             cCCCCCceeEEEEEEE--e-CCCceEeecccCCCCcccceEEEEeec
Q 028785          123 ESDVPTATYFVRAYAL--N-AERHEVAYGQSTNDQKTTNLFDIQAIT  166 (204)
Q Consensus       123 ~~dvp~atYfvraya~--d-a~g~~vaYGqs~~~~~ttn~F~V~~it  166 (204)
                      +.|.|+++|-||-+.-  . ..|.-..|--++      +.|+|...|
T Consensus       605 ~~~~~~g~yRi~~~g~~k~~~~g~~~~~~g~s------~~f~v~~~~  645 (646)
T 2zws_A          605 PPGTEPGHYYIRHYGNAKNFWTQKISEIGGST------RSFEVLGTT  645 (646)
T ss_dssp             CTTCCSEEEEEEEEEEEECTTTCCEEEEEEEC------CCEEEECCC
T ss_pred             CCCCCCcceEEEEEcccccccCCCceeeEEec------ccEEEeccC
Confidence            9999999999999995  3 457777774444      239987544

>4eis_A Polysaccharide monooxygenase-3; GH61, PMO, cellulase, biofuels, CBM33, copper monooxygenase, peroxide, superoxide, CBP21, beta-sandwich fold; HET: HIC DAH NAG; 1.37A {Neurospora crassa} PDB: 4eis_B*

Probab=86.23  E-value=4.1  Score=34.76  Aligned_cols=85  Identities=18%  Similarity=0.326  Sum_probs=46.5

Q ss_pred             eeeeCCceEEEEeeccccCcCCCccccceeEEEEeecc---ccccC-----ccccccccC-cCcCCCcceeeeccccccC
Q 028785           44 VLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAP---VSQKD-----RAWRKTEDH-LNKDKTCSFKIVEKPYNKS  114 (204)
Q Consensus        44 vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap---~SQvd-----R~WRK~~d~-l~kdK~Cq~ki~~k~y~~~  114 (204)
                      .+.|| |+|++.|..-...-.|      -|.+=|=-.|   .+..|     -.|=|=.++ +..+ .=+|  ....+...
T Consensus        64 ~V~AG-~~v~~~w~~w~~sH~G------Pv~~Ylak~~~~~~~~~d~~~sg~~WFKI~e~G~~~~-~~~W--~~~~l~~n  133 (225)
T 4eis_A           64 SAAAG-STVTLRWTIWPDSHVG------PVITYMARCPDTGCQDWTPSASDKVWFKIKEGGREGT-SNVW--AATPLMTA  133 (225)
T ss_dssp             EEETT-CEEEEEESCCCTTCCC------CEEEEEEECCTTCGGGCCCCTTCCCBEEEEEECBCTT-SSCB--TTGGGGSS
T ss_pred             EECCC-CEEEEEEEcCCCCCCC------cceeeeeeCCCCCcccccCCCCCccEEEEeeccccCC-CCcc--cchhhhcc
Confidence            45667 8999999863221113      3445454444   23333     236554432 1100 0011  11112223


Q ss_pred             CCeEEEEecCCCCCceeEEEEEEE
Q 028785          115 LQTLDWIIESDVPTATYFVRAYAL  138 (204)
Q Consensus       115 ~gs~~~tl~~dvp~atYfvraya~  138 (204)
                      +++++++||.++|++.|-+|.=.+
T Consensus       134 ~~~~~~~IP~~l~~G~YllR~E~I  157 (225)
T 4eis_A          134 PANYEYAIPSCLKPGYYLVRHEII  157 (225)
T ss_dssp             SCEEEEECCTTBCSEEEEEEEEEE
T ss_pred             cCceeEeccCCCCCcceEEEEeec
Confidence            578999999999999999997443

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=80.87  E-value=1.9  Score=33.10  Aligned_cols=33  Identities=9%  Similarity=0.141  Sum_probs=26.5

Q ss_pred             cCCCeEEEEecCC----CCCceeEEEEEEEeCCCceE
Q 028785          113 KSLQTLDWIIESD----VPTATYFVRAYALNAERHEV  145 (204)
Q Consensus       113 ~~~gs~~~tl~~d----vp~atYfvraya~da~g~~v  145 (204)
                      ++..+|+|+--.+    +|++.|.+++-+.|.+|..+
T Consensus        63 aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~d~~g~~~   99 (138)
T 3c12_A           63 AGEVSFAWDGTDANGNRMAAGKYGITATQTDTAGAKS   99 (138)
T ss_dssp             SEEEEEEECSBCTTSCBCCSEEEEEEEEEEETTCCEE
T ss_pred             CceEEEEECCcCCCCCCCCCceEEEEEEEEECCCCEE
Confidence            3346888887654    99999999999999888755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1ix2a_	102	Copper resistance protein C (CopC, PcoC) {Escheric	96.19
d2c9qa1	102	Copper resistance protein C (CopC, PcoC) {Pseudomo	95.77
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	87.38
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	81.14

>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Copper resistance protein C (CopC, PcoC)
domain: Copper resistance protein C (CopC, PcoC)
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.048  Score=38.32  Aligned_cols=91  Identities=13%  Similarity=0.235  Sum_probs=56.5

Q ss_pred             EEEecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeeccccccC
Q 028785           35 VTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKS  114 (204)
Q Consensus        35 Vtas~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~~  114 (204)
                      +..+|.+|.+|.+ .+.|++++.-.      .+..+.+++|..   +..+          .+...+.+... ...-....
T Consensus         4 ~ss~Pa~gatl~a-P~~I~L~F~e~------v~~~~s~i~v~~---~~g~----------~~~~~~~~~~~-~~~~~~~~   62 (102)
T d1ix2a_           4 KSSVPQADSAVAA-PEKIQLNFSEN------LTVKFSGAKLTM---TGMK----------GMSSHSPMPVA-AKVAPGAD   62 (102)
T ss_dssp             EEEESCTTCEESC-CSCEEEEESSC------CCGGGCEEEEEE---EECT----------TSCTTCCEEEC-EEEEECSS
T ss_pred             eecCCCCCCEEcC-CCEEEEEeCCc------cccccceEEEEe---CCCc----------ccccCCcceec-ceeeecCC
Confidence            5688999999975 89999985432      344456677754   1111          11112222110 11111222


Q ss_pred             CCeEEEEecCCCCCceeEEEEEEEeCCCceEe
Q 028785          115 LQTLDWIIESDVPTATYFVRAYALNAERHEVA  146 (204)
Q Consensus       115 ~gs~~~tl~~dvp~atYfvraya~da~g~~va  146 (204)
                      +....+.+..+.++|+|.|+=-++.+|||.+.
T Consensus        63 ~~~~~~~~~~~l~~G~Y~V~wrv~s~DGH~~~   94 (102)
T d1ix2a_          63 PKSMVIIPREPLPAGTYRVDWRAVSSDTHPIT   94 (102)
T ss_dssp             TTEEEEEESSCCCSEEEEEEEEECCTTCCCEE
T ss_pred             CCEEEEeccCCCCCceEEEEEEEEcCCCCeec
Confidence            34566777789999999999999999999764

>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Copper resistance protein C (CopC, PcoC)
domain: Copper resistance protein C (CopC, PcoC)
species: Pseudomonas syringae [TaxId: 317]

Probab=95.77  E-value=0.038  Score=38.79  Aligned_cols=90  Identities=14%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             EEEEecCCCceeeeCCceEEEEeeccccCcCCCccccceeEEEEeeccccccCccccccccCcCcCCCcceeeecccccc
Q 028785           34 QVTTTTKRGQVLKAGEDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK  113 (204)
Q Consensus        34 ~Vtas~~~g~vl~aG~D~itvtw~ln~t~~ag~d~~~ktvkvkLCYap~SQvdR~WRK~~d~l~kdK~Cq~ki~~k~y~~  113 (204)
                      .+..+|.+|+++. ..+.|++++.-    |  .+..+..++|.-             ..-+.......+   +...+...
T Consensus         4 L~~s~Pa~ga~~~-aP~~v~L~F~e----~--v~~~~s~~~l~~-------------~~~~~~~~~~~~---~~~~~~~~   60 (102)
T d2c9qa1           4 LVSSTPAEGSEGA-APAKIELHFSE----N--LVTQFSGAKLVM-------------TAMPGMEHSPMA---VKAAVSGG   60 (102)
T ss_dssp             EEEEESCTTCEES-CCSSEEEEESS----C--CCTTTCEEEEEE-------------EEETTEEEEEEE---ECEEEEEC
T ss_pred             ccccCCCCCCeeC-CCcEEEEEECC----c--cccccceEEEEe-------------cCCCcccCCcee---eecccccC
Confidence            4678899999986 58889998642    2  344456666640             010111111111   33333333


Q ss_pred             CC-CeEEEEecCCCCCceeEEEEEEEeCCCceEe
Q 028785          114 SL-QTLDWIIESDVPTATYFVRAYALNAERHEVA  146 (204)
Q Consensus       114 ~~-gs~~~tl~~dvp~atYfvraya~da~g~~va  146 (204)
                      .+ ....+.+..+.++|+|.|+--++.+|||.+.
T Consensus        61 ~~~~~~~~~~~~~l~~G~Y~V~wrvvs~DGH~~~   94 (102)
T d2c9qa1          61 GDPKTMVITPASPLTAGTYKVDWRAVSSDTHPIT   94 (102)
T ss_dssp             SSTTEEEEEESSCCCSEEEEEEEEECCTTCCCEE
T ss_pred             CCccEEEEecCCCCCCceEEEEEEEEecCCCeec
Confidence            32 4677888899999999999999999999654

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=0.7  Score=30.93  Aligned_cols=26  Identities=12%  Similarity=0.152  Sum_probs=20.5

Q ss_pred             eEEEEecCCCCCceeEEEEEEEeCCC
Q 028785          117 TLDWIIESDVPTATYFVRAYALNAER  142 (204)
Q Consensus       117 s~~~tl~~dvp~atYfvraya~da~g  142 (204)
                      ...+++..=.|..+|++|+.+++..|
T Consensus        62 ~~~~~i~~L~p~t~Y~~rV~A~n~~g   87 (108)
T d1v5ja_          62 ETELLVPGLIKDVLYEFRLVAFAGSF   87 (108)
T ss_dssp             CCEEECCCCCTTSCEECCBEEEETTE
T ss_pred             eeeEEEEeccCCcEEEEEEEEEeCCC
Confidence            34666766678889999999997666

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.14  E-value=3.9  Score=26.09  Aligned_cols=29  Identities=10%  Similarity=0.106  Sum_probs=24.3

Q ss_pred             CCeEEEEecCCCCCceeEEEEEEEeCCCc
Q 028785          115 LQTLDWIIESDVPTATYFVRAYALNAERH  143 (204)
Q Consensus       115 ~gs~~~tl~~dvp~atYfvraya~da~g~  143 (204)
                      ++...|+|..=.|.-+|.||+++++..|.
T Consensus        62 ~~~~~~~v~~L~p~t~Y~~~V~a~~~~g~   90 (101)
T d2cuia1          62 GTRHSAVLRDLRSGTLYSLTLYGLRGPHK   90 (101)
T ss_dssp             TTCCEEEECSCCTTCEEEEEEEEECSSSE
T ss_pred             cceeEEEeCCCCcCCEEEEEEEEEeCCcE
Confidence            35678888877899999999999988774